HEADER PLANT PROTEIN 15-JUL-25 9RZI TITLE CRYSTAL STRUCTURE OF AMBORELLA TRICHOPODA ACCO2 IN COMPLEX WITH FE AND TITLE 2 ACC COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOCYCLOPROPANECARBOXYLATE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.17.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMBORELLA TRICHOPODA; SOURCE 3 ORGANISM_TAXID: 13333; SOURCE 4 GENE: AMTR_S00112P00098670; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_ATCC_NUMBER: BAA-1025 KEYWDS AMINOCYCLOPROPANECARBOXYLATE ETHYLENE OXIDOREDUCTASE, PLANT HORMONE, KEYWDS 2 PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,C.J.SCHOFIELD REVDAT 1 29-JUL-26 9RZI 0 JRNL AUTH Z.ZHANG,C.J.SCHOFIELD JRNL TITL STRUCTURES AND MECHANISMS OF AMBORELLA ACC OXIDASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 51912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 2708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9000 - 3.8700 1.00 2851 146 0.1673 0.1885 REMARK 3 2 3.8700 - 3.0700 1.00 2695 145 0.1599 0.1823 REMARK 3 3 3.0700 - 2.6800 1.00 2672 145 0.1778 0.2301 REMARK 3 4 2.6800 - 2.4400 1.00 2634 153 0.1710 0.2189 REMARK 3 5 2.4400 - 2.2600 0.99 2624 151 0.1659 0.1971 REMARK 3 6 2.2600 - 2.1300 0.99 2627 136 0.1782 0.2431 REMARK 3 7 2.1300 - 2.0200 0.99 2578 169 0.1892 0.2086 REMARK 3 8 2.0200 - 1.9300 0.99 2626 128 0.1972 0.2253 REMARK 3 9 1.9300 - 1.8600 0.99 2561 141 0.2126 0.2671 REMARK 3 10 1.8600 - 1.8000 0.99 2610 117 0.2490 0.3176 REMARK 3 11 1.8000 - 1.7400 0.99 2565 140 0.2669 0.2952 REMARK 3 12 1.7400 - 1.6900 0.98 2544 167 0.2916 0.3296 REMARK 3 13 1.6900 - 1.6500 0.98 2578 133 0.3058 0.3344 REMARK 3 14 1.6500 - 1.6100 0.99 2552 140 0.3367 0.3498 REMARK 3 15 1.6100 - 1.5700 0.98 2513 146 0.3637 0.3856 REMARK 3 16 1.5700 - 1.5400 0.97 2537 147 0.3877 0.4144 REMARK 3 17 1.5400 - 1.5000 0.99 2556 124 0.4308 0.4514 REMARK 3 18 1.5000 - 1.4800 0.96 2494 135 0.4663 0.5187 REMARK 3 19 1.4800 - 1.4500 0.93 2387 145 0.5076 0.5122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.254 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.784 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2567 REMARK 3 ANGLE : 0.944 3468 REMARK 3 CHIRALITY : 0.085 369 REMARK 3 PLANARITY : 0.010 448 REMARK 3 DIHEDRAL : 14.238 987 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3791 4.0524 -1.4691 REMARK 3 T TENSOR REMARK 3 T11: 0.3334 T22: 0.3959 REMARK 3 T33: 0.1771 T12: 0.0445 REMARK 3 T13: 0.0183 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 1.4663 L22: 4.6760 REMARK 3 L33: 3.9293 L12: 0.6295 REMARK 3 L13: 0.0118 L23: 0.6478 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: 0.5166 S13: 0.1905 REMARK 3 S21: -0.6307 S22: -0.0002 S23: -0.1117 REMARK 3 S31: -0.4906 S32: -0.0301 S33: -0.0216 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5138 -21.8325 15.4312 REMARK 3 T TENSOR REMARK 3 T11: 0.2921 T22: 0.2787 REMARK 3 T33: 0.2798 T12: -0.0073 REMARK 3 T13: -0.0075 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 5.9546 L22: 3.6825 REMARK 3 L33: 2.1285 L12: 0.7743 REMARK 3 L13: -2.9280 L23: -1.2936 REMARK 3 S TENSOR REMARK 3 S11: 0.1188 S12: -0.4125 S13: -0.4492 REMARK 3 S21: 0.4048 S22: 0.0519 S23: 0.4226 REMARK 3 S31: 0.2879 S32: 0.0751 S33: -0.1107 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2167 -8.5876 13.1106 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.3158 REMARK 3 T33: 0.1534 T12: 0.0344 REMARK 3 T13: -0.0026 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 1.6487 L22: 2.9252 REMARK 3 L33: 1.6625 L12: 0.9122 REMARK 3 L13: -0.2815 L23: -0.5199 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: -0.0244 S13: -0.0685 REMARK 3 S21: -0.0944 S22: 0.0307 S23: -0.2001 REMARK 3 S31: 0.0460 S32: 0.1551 S33: -0.1108 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3284 -1.1860 13.5553 REMARK 3 T TENSOR REMARK 3 T11: 0.1949 T22: 0.2818 REMARK 3 T33: 0.1625 T12: 0.0240 REMARK 3 T13: 0.0015 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.7849 L22: 1.1364 REMARK 3 L33: 1.0877 L12: 0.4623 REMARK 3 L13: 0.0831 L23: 0.3102 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: -0.0409 S13: 0.0425 REMARK 3 S21: -0.0996 S22: -0.0751 S23: 0.0783 REMARK 3 S31: -0.0701 S32: -0.0798 S33: -0.0151 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8388 7.6097 23.8793 REMARK 3 T TENSOR REMARK 3 T11: 0.2491 T22: 0.4518 REMARK 3 T33: 0.2232 T12: 0.0083 REMARK 3 T13: 0.0316 T23: -0.0816 REMARK 3 L TENSOR REMARK 3 L11: 2.5430 L22: 6.8504 REMARK 3 L33: 4.3618 L12: 0.3044 REMARK 3 L13: 0.1880 L23: -2.2981 REMARK 3 S TENSOR REMARK 3 S11: 0.1094 S12: -0.1398 S13: 0.1150 REMARK 3 S21: 0.1330 S22: 0.0768 S23: 0.1635 REMARK 3 S31: -0.0515 S32: -0.0585 S33: -0.1894 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4615 11.7689 29.3028 REMARK 3 T TENSOR REMARK 3 T11: 0.2865 T22: 0.3229 REMARK 3 T33: 0.2026 T12: -0.0190 REMARK 3 T13: 0.0275 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 4.2931 L22: 6.5705 REMARK 3 L33: 9.4674 L12: 0.9307 REMARK 3 L13: 6.2518 L23: 2.8632 REMARK 3 S TENSOR REMARK 3 S11: -0.3241 S12: 0.2037 S13: 0.2243 REMARK 3 S21: -0.2008 S22: 0.1406 S23: -0.1994 REMARK 3 S31: -0.5627 S32: 0.1325 S33: 0.1663 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9RZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1292149241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94056 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52213 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 40.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.13100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 5.74500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: GOLD BAR SHAPED WITH VARIOUS SIZE UPTO 0.5 MILLIMETER IN REMARK 200 LENGTH. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: UNDER ANAEROBIC CONDITION. 25-28% REMARK 280 PEG3350, 0.1 M CHES PH 9.5, 3 MM AMMONIUM IRON (II) SULPHATE REMARK 280 HEXAHYDRATE, 30 MM ACC. MICROSEEDING WAS CARRIED OUT. THE REMARK 280 CRYSTAL WAS SOAKED WITH NITRIC OXIDE SATURATED WELL SOLUTION FOR REMARK 280 30 MIN., AND FLASH FROZEN IN LIQUID NITROGEN., EVAPORATION, REMARK 280 TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.79500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.79500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 77 REMARK 465 GLU A 78 REMARK 465 GLU A 79 REMARK 465 GLU A 80 REMARK 465 ILE A 312 REMARK 465 ALA A 313 REMARK 465 THR A 314 REMARK 465 ALA A 315 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 178 FE FE2 A 401 1.34 REMARK 500 O HOH A 711 O HOH A 712 1.70 REMARK 500 OE1 GLU A 116 O HOH A 501 1.81 REMARK 500 O HOH A 598 O HOH A 685 1.89 REMARK 500 O HOH A 648 O HOH A 681 2.01 REMARK 500 O HOH A 632 O HOH A 707 2.01 REMARK 500 O HOH A 638 O HOH A 699 2.05 REMARK 500 O HOH A 664 O HOH A 699 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 501 O HOH A 619 4545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 82 -146.73 65.19 REMARK 500 ASP A 105 -3.78 73.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 59 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 712 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 178 NE2 REMARK 620 2 ASP A 180 OD1 95.3 REMARK 620 3 HIS A 235 NE2 88.1 91.2 REMARK 620 4 1AC A 402 O 88.7 174.1 93.2 REMARK 620 5 1AC A 402 N 168.9 95.6 89.5 80.6 REMARK 620 6 NO A 404 N 90.2 76.8 167.7 98.9 94.4 REMARK 620 7 NO A 404 O 89.4 107.7 161.0 67.9 89.4 31.0 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9QIF RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE REMARK 900 RELATED ID: 9RSZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE REMARK 900 RELATED ID: 9RT1 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE REMARK 900 RELATED ID: 9RT0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE REMARK 900 RELATED ID: 9RSY RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE REMARK 900 RELATED ID: 9RT5 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH DIFFERENT SUBSTRATE DBREF 9RZI A 22 315 UNP W1NXW4 W1NXW4_AMBTC 1 294 SEQADV 9RZI GLY A 2 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI PHE A 3 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI SER A 4 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI PHE A 5 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI PRO A 6 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI VAL A 7 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI VAL A 8 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI ASP A 9 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI LEU A 10 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI GLN A 11 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI GLU A 12 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI LEU A 13 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI GLU A 14 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI GLY A 15 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI GLY A 16 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI GLU A 17 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI ARG A 18 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI LYS A 19 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI SER A 20 UNP W1NXW4 EXPRESSION TAG SEQADV 9RZI ALA A 21 UNP W1NXW4 EXPRESSION TAG SEQRES 1 A 314 GLY PHE SER PHE PRO VAL VAL ASP LEU GLN GLU LEU GLU SEQRES 2 A 314 GLY GLY GLU ARG LYS SER ALA MET GLU LEU ILE ASN ASP SEQRES 3 A 314 ALA CYS GLU ASN TRP GLY PHE PHE GLU VAL VAL ASN HIS SEQRES 4 A 314 GLY LEU SER GLN GLU PHE MET ASP GLN VAL GLU SER LEU SEQRES 5 A 314 THR LYS GLU HIS TYR ARG LYS TYR MET GLU LYS ARG PHE SEQRES 6 A 314 LYS ASP GLU VAL ALA GLU ARG VAL LEU LYS LYS GLU GLU SEQRES 7 A 314 GLU VAL LYS ASP LEU ASP TRP GLU SER THR PHE TYR LEU SEQRES 8 A 314 ARG HIS LEU PRO SER SER ASN ILE SER GLU ILE PRO ASP SEQRES 9 A 314 LEU ASP HIS GLU TYR ARG ARG VAL MET LYS GLU PHE ALA SEQRES 10 A 314 GLY VAL ILE GLU LYS LEU ALA GLU LYS LEU LEU ASP VAL SEQRES 11 A 314 LEU CYS GLU ASN LEU GLY LEU GLU LYS GLY TYR LEU LYS SEQRES 12 A 314 LYS ALA PHE GLN GLY LYS ASN GLY TYR PRO THR PHE GLY SEQRES 13 A 314 THR LYS VAL SER SER TYR PRO PRO CYS PRO ARG PRO GLU SEQRES 14 A 314 LEU VAL LYS GLY LEU ARG ALA HIS THR ASP ALA GLY GLY SEQRES 15 A 314 LEU VAL LEU LEU PHE GLN ASP PRO GLN VAL SER GLY LEU SEQRES 16 A 314 GLN LEU LEU LYS ASP GLY GLU TRP VAL ASP VAL PRO PRO SEQRES 17 A 314 LEU ARG HIS SER ILE VAL ILE ASN ILE GLY ASP GLN LEU SEQRES 18 A 314 GLU VAL ILE THR ASN GLY ARG TYR LYS SER VAL MET HIS SEQRES 19 A 314 ARG VAL VAL ALA GLN THR ASN GLY ASN ARG MET SER ILE SEQRES 20 A 314 ALA SER PHE TYR ASN PRO GLY SER ASP ALA VAL ILE PHE SEQRES 21 A 314 PRO ALA PRO THR LEU LEU LYS LYS GLU THR ALA GLU TYR SEQRES 22 A 314 PRO LYS PHE VAL PHE GLU ASP TYR MET LYS LEU TYR VAL SEQRES 23 A 314 GLY GLN LYS PHE GLN ALA LYS GLU PRO ARG PHE GLU THR SEQRES 24 A 314 MET LYS ALA MET GLU THR VAL SER LEU GLY PRO ILE ALA SEQRES 25 A 314 THR ALA HET FE2 A 401 1 HET 1AC A 402 13 HET NHE A 403 30 HET NO A 404 2 HETNAM FE2 FE (II) ION HETNAM 1AC 1-AMINOCYCLOPROPANECARBOXYLIC ACID HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM NO NITRIC OXIDE HETSYN NHE N-CYCLOHEXYLTAURINE; CHES HETSYN NO NITROGEN MONOXIDE FORMUL 2 FE2 FE 2+ FORMUL 3 1AC C4 H7 N O2 FORMUL 4 NHE C8 H17 N O3 S FORMUL 5 NO N O FORMUL 6 HOH *212(H2 O) HELIX 1 AA1 GLN A 11 GLY A 15 5 5 HELIX 2 AA2 GLU A 17 TRP A 32 1 16 HELIX 3 AA3 SER A 43 LYS A 76 1 34 HELIX 4 AA4 ASP A 107 GLY A 137 1 31 HELIX 5 AA5 GLY A 141 PHE A 147 1 7 HELIX 6 AA6 GLY A 219 THR A 226 1 8 HELIX 7 AA7 ALA A 263 LYS A 268 5 6 HELIX 8 AA8 PHE A 279 LYS A 290 1 12 HELIX 9 AA9 ALA A 293 GLU A 305 1 13 HELIX 10 AB1 THR A 306 SER A 308 5 3 SHEET 1 AA1 7 VAL A 7 ASP A 9 0 SHEET 2 AA1 7 PHE A 34 VAL A 38 1 O GLU A 36 N VAL A 8 SHEET 3 AA1 7 ILE A 214 ILE A 218 -1 O ILE A 216 N PHE A 35 SHEET 4 AA1 7 LEU A 184 GLN A 189 -1 N LEU A 187 O VAL A 215 SHEET 5 AA1 7 ARG A 245 ASN A 253 -1 O SER A 250 N LEU A 186 SHEET 6 AA1 7 THR A 155 TYR A 163 -1 N THR A 155 O ASN A 253 SHEET 7 AA1 7 SER A 88 LEU A 95 -1 N HIS A 94 O PHE A 156 SHEET 1 AA2 4 LEU A 175 HIS A 178 0 SHEET 2 AA2 4 HIS A 235 VAL A 237 -1 O VAL A 237 N LEU A 175 SHEET 3 AA2 4 LEU A 196 LYS A 200 -1 N GLN A 197 O ARG A 236 SHEET 4 AA2 4 GLU A 203 ASP A 206 -1 O VAL A 205 N LEU A 198 SHEET 1 AA3 2 VAL A 259 ILE A 260 0 SHEET 2 AA3 2 PHE A 277 VAL A 278 -1 O PHE A 277 N ILE A 260 LINK NE2 HIS A 178 FE FE2 A 401 1555 1555 2.15 LINK OD1 ASP A 180 FE FE2 A 401 1555 1555 2.03 LINK NE2 HIS A 235 FE FE2 A 401 1555 1555 2.19 LINK FE FE2 A 401 O 1AC A 402 1555 1555 1.93 LINK FE FE2 A 401 N 1AC A 402 1555 1555 2.29 LINK FE FE2 A 401 N NO A 404 1555 1555 2.11 LINK FE FE2 A 401 O NO A 404 1555 1555 2.77 CISPEP 1 LEU A 95 PRO A 96 0 6.93 CRYST1 43.590 58.380 114.620 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017129 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008724 0.00000 CONECT 2828 4957 CONECT 2856 4957 CONECT 3723 4957 CONECT 4957 2828 2856 3723 4963 CONECT 4957 4964 5001 5002 CONECT 4958 4959 4960 4966 4967 CONECT 4959 4958 4960 4968 4969 CONECT 4960 4958 4959 4961 4964 CONECT 4961 4960 4962 4963 CONECT 4962 4961 CONECT 4963 4957 4961 CONECT 4964 4957 4960 4965 4970 CONECT 4965 4964 CONECT 4966 4958 CONECT 4967 4958 CONECT 4968 4959 CONECT 4969 4959 CONECT 4970 4964 CONECT 4971 4972 4983 4984 4985 CONECT 4972 4971 4973 4986 4987 CONECT 4973 4972 4974 4975 4988 CONECT 4974 4973 4982 4989 4990 CONECT 4975 4973 4976 4991 CONECT 4976 4975 4977 4992 4993 CONECT 4977 4976 4978 4994 4995 CONECT 4978 4977 4979 4980 4981 CONECT 4979 4978 CONECT 4980 4978 CONECT 4981 4978 4996 CONECT 4982 4974 4983 4997 4998 CONECT 4983 4971 4982 4999 5000 CONECT 4984 4971 CONECT 4985 4971 CONECT 4986 4972 CONECT 4987 4972 CONECT 4988 4973 CONECT 4989 4974 CONECT 4990 4974 CONECT 4991 4975 CONECT 4992 4976 CONECT 4993 4976 CONECT 4994 4977 CONECT 4995 4977 CONECT 4996 4981 CONECT 4997 4982 CONECT 4998 4982 CONECT 4999 4983 CONECT 5000 4983 CONECT 5001 4957 5002 CONECT 5002 4957 5001 MASTER 434 0 4 10 13 0 0 6 2694 1 50 25 END