data_9S7Q # _entry.id 9S7Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9S7Q pdb_00009s7q 10.2210/pdb9s7q/pdb WWPDB D_1292147876 ? ? EMDB EMD-54647 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-08-26 ? 2 'EM metadata' 1 0 2026-08-26 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9S7Q _pdbx_database_status.recvd_initial_deposition_date 2025-08-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 2 in PBS pH 6.5' _pdbx_database_related.db_id EMD-54647 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email meytal.landau@cssb-hamburg.de _pdbx_contact_author.name_first Meytal _pdbx_contact_author.name_last Landau _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1743-3430 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ragonis-Bachar, P.' 1 ? 'Strati, F.' 2 ? 'Gustavsson, E.' 3 ? 'Khokhlov, A.' 4 ? 'Barnea, E.' 5 ? 'Rayan, B.' 6 ? 'Upchr, A.' 7 ? 'Landau, M.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Amyloidogenic Nature and Structural Polymorphism of Antimicrobial, Virulent and Defense Peptides' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ragonis-Bachar, P.' 1 ? primary 'Strati, F.' 2 ? primary 'Gustavsson, E.' 3 ? primary 'Khokhlov, A.' 4 ? primary 'Barnea, E.' 5 ? primary 'Rayan, B.' 6 ? primary 'Upchr, A.' 7 ? primary 'Landau, M.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Brevinin-1OKc _entity.formula_weight 2274.832 _entity.pdbx_number_of_molecules 18 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'FFGSIIGALAKGLPSLISLIKK(NH2)' _entity_poly.pdbx_seq_one_letter_code_can FFGSIIGALAKGLPSLISLIKKX _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 ILE n 1 6 ILE n 1 7 GLY n 1 8 ALA n 1 9 LEU n 1 10 ALA n 1 11 LYS n 1 12 GLY n 1 13 LEU n 1 14 PRO n 1 15 SER n 1 16 LEU n 1 17 ILE n 1 18 SER n 1 19 LEU n 1 20 ILE n 1 21 LYS n 1 22 LYS n 1 23 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 23 _pdbx_entity_src_syn.organism_scientific 'Nidirana okinavana' _pdbx_entity_src_syn.organism_common_name 'Kampira Falls frog' _pdbx_entity_src_syn.ncbi_taxonomy_id 156870 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 1 1 PHE PHE A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 LYS 22 34 34 LYS LYS A . n A 1 23 NH2 23 35 35 NH2 NH2 A . n B 1 1 PHE 1 1 1 PHE PHE B . n B 1 2 PHE 2 2 2 PHE PHE B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 SER 4 4 4 SER SER B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 ALA 8 8 8 ALA ALA B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 PRO 14 14 14 PRO PRO B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 ILE 17 17 17 ILE ILE B . n B 1 18 SER 18 18 18 SER SER B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 ILE 20 20 20 ILE ILE B . n B 1 21 LYS 21 21 21 LYS LYS B . n B 1 22 LYS 22 34 34 LYS LYS B . n B 1 23 NH2 23 35 35 NH2 NH2 B . n C 1 1 PHE 1 1 1 PHE PHE C . n C 1 2 PHE 2 2 2 PHE PHE C . n C 1 3 GLY 3 3 3 GLY GLY C . n C 1 4 SER 4 4 4 SER SER C . n C 1 5 ILE 5 5 5 ILE ILE C . n C 1 6 ILE 6 6 6 ILE ILE C . n C 1 7 GLY 7 7 7 GLY GLY C . n C 1 8 ALA 8 8 8 ALA ALA C . n C 1 9 LEU 9 9 9 LEU LEU C . n C 1 10 ALA 10 10 10 ALA ALA C . n C 1 11 LYS 11 11 11 LYS LYS C . n C 1 12 GLY 12 12 12 GLY GLY C . n C 1 13 LEU 13 13 13 LEU LEU C . n C 1 14 PRO 14 14 14 PRO PRO C . n C 1 15 SER 15 15 15 SER SER C . n C 1 16 LEU 16 16 16 LEU LEU C . n C 1 17 ILE 17 17 17 ILE ILE C . n C 1 18 SER 18 18 18 SER SER C . n C 1 19 LEU 19 19 19 LEU LEU C . n C 1 20 ILE 20 20 20 ILE ILE C . n C 1 21 LYS 21 21 21 LYS LYS C . n C 1 22 LYS 22 34 34 LYS LYS C . n C 1 23 NH2 23 35 35 NH2 NH2 C . n D 1 1 PHE 1 1 1 PHE PHE D . n D 1 2 PHE 2 2 2 PHE PHE D . n D 1 3 GLY 3 3 3 GLY GLY D . n D 1 4 SER 4 4 4 SER SER D . n D 1 5 ILE 5 5 5 ILE ILE D . n D 1 6 ILE 6 6 6 ILE ILE D . n D 1 7 GLY 7 7 7 GLY GLY D . n D 1 8 ALA 8 8 8 ALA ALA D . n D 1 9 LEU 9 9 9 LEU LEU D . n D 1 10 ALA 10 10 10 ALA ALA D . n D 1 11 LYS 11 11 11 LYS LYS D . n D 1 12 GLY 12 12 12 GLY GLY D . n D 1 13 LEU 13 13 13 LEU LEU D . n D 1 14 PRO 14 14 14 PRO PRO D . n D 1 15 SER 15 15 15 SER SER D . n D 1 16 LEU 16 16 16 LEU LEU D . n D 1 17 ILE 17 17 17 ILE ILE D . n D 1 18 SER 18 18 18 SER SER D . n D 1 19 LEU 19 19 19 LEU LEU D . n D 1 20 ILE 20 20 20 ILE ILE D . n D 1 21 LYS 21 21 21 LYS LYS D . n D 1 22 LYS 22 34 34 LYS LYS D . n D 1 23 NH2 23 35 35 NH2 NH2 D . n E 1 1 PHE 1 1 1 PHE PHE E . n E 1 2 PHE 2 2 2 PHE PHE E . n E 1 3 GLY 3 3 3 GLY GLY E . n E 1 4 SER 4 4 4 SER SER E . n E 1 5 ILE 5 5 5 ILE ILE E . n E 1 6 ILE 6 6 6 ILE ILE E . n E 1 7 GLY 7 7 7 GLY GLY E . n E 1 8 ALA 8 8 8 ALA ALA E . n E 1 9 LEU 9 9 9 LEU LEU E . n E 1 10 ALA 10 10 10 ALA ALA E . n E 1 11 LYS 11 11 11 LYS LYS E . n E 1 12 GLY 12 12 12 GLY GLY E . n E 1 13 LEU 13 13 13 LEU LEU E . n E 1 14 PRO 14 14 14 PRO PRO E . n E 1 15 SER 15 15 15 SER SER E . n E 1 16 LEU 16 16 16 LEU LEU E . n E 1 17 ILE 17 17 17 ILE ILE E . n E 1 18 SER 18 18 18 SER SER E . n E 1 19 LEU 19 19 19 LEU LEU E . n E 1 20 ILE 20 20 20 ILE ILE E . n E 1 21 LYS 21 21 21 LYS LYS E . n E 1 22 LYS 22 34 34 LYS LYS E . n E 1 23 NH2 23 35 35 NH2 NH2 E . n F 1 1 PHE 1 1 1 PHE PHE F . n F 1 2 PHE 2 2 2 PHE PHE F . n F 1 3 GLY 3 3 3 GLY GLY F . n F 1 4 SER 4 4 4 SER SER F . n F 1 5 ILE 5 5 5 ILE ILE F . n F 1 6 ILE 6 6 6 ILE ILE F . n F 1 7 GLY 7 7 7 GLY GLY F . n F 1 8 ALA 8 8 8 ALA ALA F . n F 1 9 LEU 9 9 9 LEU LEU F . n F 1 10 ALA 10 10 10 ALA ALA F . n F 1 11 LYS 11 11 11 LYS LYS F . n F 1 12 GLY 12 12 12 GLY GLY F . n F 1 13 LEU 13 13 13 LEU LEU F . n F 1 14 PRO 14 14 14 PRO PRO F . n F 1 15 SER 15 15 15 SER SER F . n F 1 16 LEU 16 16 16 LEU LEU F . n F 1 17 ILE 17 17 17 ILE ILE F . n F 1 18 SER 18 18 18 SER SER F . n F 1 19 LEU 19 19 19 LEU LEU F . n F 1 20 ILE 20 20 20 ILE ILE F . n F 1 21 LYS 21 21 21 LYS LYS F . n F 1 22 LYS 22 34 34 LYS LYS F . n F 1 23 NH2 23 35 35 NH2 NH2 F . n G 1 1 PHE 1 1 1 PHE PHE G . n G 1 2 PHE 2 2 2 PHE PHE G . n G 1 3 GLY 3 3 3 GLY GLY G . n G 1 4 SER 4 4 4 SER SER G . n G 1 5 ILE 5 5 5 ILE ILE G . n G 1 6 ILE 6 6 6 ILE ILE G . n G 1 7 GLY 7 7 7 GLY GLY G . n G 1 8 ALA 8 8 8 ALA ALA G . n G 1 9 LEU 9 9 9 LEU LEU G . n G 1 10 ALA 10 10 10 ALA ALA G . n G 1 11 LYS 11 11 11 LYS LYS G . n G 1 12 GLY 12 12 12 GLY GLY G . n G 1 13 LEU 13 13 13 LEU LEU G . n G 1 14 PRO 14 14 14 PRO PRO G . n G 1 15 SER 15 15 15 SER SER G . n G 1 16 LEU 16 16 16 LEU LEU G . n G 1 17 ILE 17 17 17 ILE ILE G . n G 1 18 SER 18 18 18 SER SER G . n G 1 19 LEU 19 19 19 LEU LEU G . n G 1 20 ILE 20 20 20 ILE ILE G . n G 1 21 LYS 21 21 21 LYS LYS G . n G 1 22 LYS 22 34 34 LYS LYS G . n G 1 23 NH2 23 35 35 NH2 NH2 G . n H 1 1 PHE 1 1 1 PHE PHE H . n H 1 2 PHE 2 2 2 PHE PHE H . n H 1 3 GLY 3 3 3 GLY GLY H . n H 1 4 SER 4 4 4 SER SER H . n H 1 5 ILE 5 5 5 ILE ILE H . n H 1 6 ILE 6 6 6 ILE ILE H . n H 1 7 GLY 7 7 7 GLY GLY H . n H 1 8 ALA 8 8 8 ALA ALA H . n H 1 9 LEU 9 9 9 LEU LEU H . n H 1 10 ALA 10 10 10 ALA ALA H . n H 1 11 LYS 11 11 11 LYS LYS H . n H 1 12 GLY 12 12 12 GLY GLY H . n H 1 13 LEU 13 13 13 LEU LEU H . n H 1 14 PRO 14 14 14 PRO PRO H . n H 1 15 SER 15 15 15 SER SER H . n H 1 16 LEU 16 16 16 LEU LEU H . n H 1 17 ILE 17 17 17 ILE ILE H . n H 1 18 SER 18 18 18 SER SER H . n H 1 19 LEU 19 19 19 LEU LEU H . n H 1 20 ILE 20 20 20 ILE ILE H . n H 1 21 LYS 21 21 21 LYS LYS H . n H 1 22 LYS 22 34 34 LYS LYS H . n H 1 23 NH2 23 35 35 NH2 NH2 H . n I 1 1 PHE 1 1 1 PHE PHE I . n I 1 2 PHE 2 2 2 PHE PHE I . n I 1 3 GLY 3 3 3 GLY GLY I . n I 1 4 SER 4 4 4 SER SER I . n I 1 5 ILE 5 5 5 ILE ILE I . n I 1 6 ILE 6 6 6 ILE ILE I . n I 1 7 GLY 7 7 7 GLY GLY I . n I 1 8 ALA 8 8 8 ALA ALA I . n I 1 9 LEU 9 9 9 LEU LEU I . n I 1 10 ALA 10 10 10 ALA ALA I . n I 1 11 LYS 11 11 11 LYS LYS I . n I 1 12 GLY 12 12 12 GLY GLY I . n I 1 13 LEU 13 13 13 LEU LEU I . n I 1 14 PRO 14 14 14 PRO PRO I . n I 1 15 SER 15 15 15 SER SER I . n I 1 16 LEU 16 16 16 LEU LEU I . n I 1 17 ILE 17 17 17 ILE ILE I . n I 1 18 SER 18 18 18 SER SER I . n I 1 19 LEU 19 19 19 LEU LEU I . n I 1 20 ILE 20 20 20 ILE ILE I . n I 1 21 LYS 21 21 21 LYS LYS I . n I 1 22 LYS 22 34 34 LYS LYS I . n I 1 23 NH2 23 35 35 NH2 NH2 I . n J 1 1 PHE 1 1 1 PHE PHE J . n J 1 2 PHE 2 2 2 PHE PHE J . n J 1 3 GLY 3 3 3 GLY GLY J . n J 1 4 SER 4 4 4 SER SER J . n J 1 5 ILE 5 5 5 ILE ILE J . n J 1 6 ILE 6 6 6 ILE ILE J . n J 1 7 GLY 7 7 7 GLY GLY J . n J 1 8 ALA 8 8 8 ALA ALA J . n J 1 9 LEU 9 9 9 LEU LEU J . n J 1 10 ALA 10 10 10 ALA ALA J . n J 1 11 LYS 11 11 11 LYS LYS J . n J 1 12 GLY 12 12 12 GLY GLY J . n J 1 13 LEU 13 13 13 LEU LEU J . n J 1 14 PRO 14 14 14 PRO PRO J . n J 1 15 SER 15 15 15 SER SER J . n J 1 16 LEU 16 16 16 LEU LEU J . n J 1 17 ILE 17 17 17 ILE ILE J . n J 1 18 SER 18 18 18 SER SER J . n J 1 19 LEU 19 19 19 LEU LEU J . n J 1 20 ILE 20 20 20 ILE ILE J . n J 1 21 LYS 21 21 21 LYS LYS J . n J 1 22 LYS 22 34 34 LYS LYS J . n J 1 23 NH2 23 35 35 NH2 NH2 J . n K 1 1 PHE 1 1 1 PHE PHE K . n K 1 2 PHE 2 2 2 PHE PHE K . n K 1 3 GLY 3 3 3 GLY GLY K . n K 1 4 SER 4 4 4 SER SER K . n K 1 5 ILE 5 5 5 ILE ILE K . n K 1 6 ILE 6 6 6 ILE ILE K . n K 1 7 GLY 7 7 7 GLY GLY K . n K 1 8 ALA 8 8 8 ALA ALA K . n K 1 9 LEU 9 9 9 LEU LEU K . n K 1 10 ALA 10 10 10 ALA ALA K . n K 1 11 LYS 11 11 11 LYS LYS K . n K 1 12 GLY 12 12 12 GLY GLY K . n K 1 13 LEU 13 13 13 LEU LEU K . n K 1 14 PRO 14 14 14 PRO PRO K . n K 1 15 SER 15 15 15 SER SER K . n K 1 16 LEU 16 16 16 LEU LEU K . n K 1 17 ILE 17 17 17 ILE ILE K . n K 1 18 SER 18 18 18 SER SER K . n K 1 19 LEU 19 19 19 LEU LEU K . n K 1 20 ILE 20 20 20 ILE ILE K . n K 1 21 LYS 21 21 21 LYS LYS K . n K 1 22 LYS 22 34 34 LYS LYS K . n K 1 23 NH2 23 35 35 NH2 NH2 K . n L 1 1 PHE 1 1 1 PHE PHE L . n L 1 2 PHE 2 2 2 PHE PHE L . n L 1 3 GLY 3 3 3 GLY GLY L . n L 1 4 SER 4 4 4 SER SER L . n L 1 5 ILE 5 5 5 ILE ILE L . n L 1 6 ILE 6 6 6 ILE ILE L . n L 1 7 GLY 7 7 7 GLY GLY L . n L 1 8 ALA 8 8 8 ALA ALA L . n L 1 9 LEU 9 9 9 LEU LEU L . n L 1 10 ALA 10 10 10 ALA ALA L . n L 1 11 LYS 11 11 11 LYS LYS L . n L 1 12 GLY 12 12 12 GLY GLY L . n L 1 13 LEU 13 13 13 LEU LEU L . n L 1 14 PRO 14 14 14 PRO PRO L . n L 1 15 SER 15 15 15 SER SER L . n L 1 16 LEU 16 16 16 LEU LEU L . n L 1 17 ILE 17 17 17 ILE ILE L . n L 1 18 SER 18 18 18 SER SER L . n L 1 19 LEU 19 19 19 LEU LEU L . n L 1 20 ILE 20 20 20 ILE ILE L . n L 1 21 LYS 21 21 21 LYS LYS L . n L 1 22 LYS 22 34 34 LYS LYS L . n L 1 23 NH2 23 35 35 NH2 NH2 L . n M 1 1 PHE 1 1 1 PHE PHE M . n M 1 2 PHE 2 2 2 PHE PHE M . n M 1 3 GLY 3 3 3 GLY GLY M . n M 1 4 SER 4 4 4 SER SER M . n M 1 5 ILE 5 5 5 ILE ILE M . n M 1 6 ILE 6 6 6 ILE ILE M . n M 1 7 GLY 7 7 7 GLY GLY M . n M 1 8 ALA 8 8 8 ALA ALA M . n M 1 9 LEU 9 9 9 LEU LEU M . n M 1 10 ALA 10 10 10 ALA ALA M . n M 1 11 LYS 11 11 11 LYS LYS M . n M 1 12 GLY 12 12 12 GLY GLY M . n M 1 13 LEU 13 13 13 LEU LEU M . n M 1 14 PRO 14 14 14 PRO PRO M . n M 1 15 SER 15 15 15 SER SER M . n M 1 16 LEU 16 16 16 LEU LEU M . n M 1 17 ILE 17 17 17 ILE ILE M . n M 1 18 SER 18 18 18 SER SER M . n M 1 19 LEU 19 19 19 LEU LEU M . n M 1 20 ILE 20 20 20 ILE ILE M . n M 1 21 LYS 21 21 21 LYS LYS M . n M 1 22 LYS 22 34 34 LYS LYS M . n M 1 23 NH2 23 35 35 NH2 NH2 M . n N 1 1 PHE 1 1 1 PHE PHE N . n N 1 2 PHE 2 2 2 PHE PHE N . n N 1 3 GLY 3 3 3 GLY GLY N . n N 1 4 SER 4 4 4 SER SER N . n N 1 5 ILE 5 5 5 ILE ILE N . n N 1 6 ILE 6 6 6 ILE ILE N . n N 1 7 GLY 7 7 7 GLY GLY N . n N 1 8 ALA 8 8 8 ALA ALA N . n N 1 9 LEU 9 9 9 LEU LEU N . n N 1 10 ALA 10 10 10 ALA ALA N . n N 1 11 LYS 11 11 11 LYS LYS N . n N 1 12 GLY 12 12 12 GLY GLY N . n N 1 13 LEU 13 13 13 LEU LEU N . n N 1 14 PRO 14 14 14 PRO PRO N . n N 1 15 SER 15 15 15 SER SER N . n N 1 16 LEU 16 16 16 LEU LEU N . n N 1 17 ILE 17 17 17 ILE ILE N . n N 1 18 SER 18 18 18 SER SER N . n N 1 19 LEU 19 19 19 LEU LEU N . n N 1 20 ILE 20 20 20 ILE ILE N . n N 1 21 LYS 21 21 21 LYS LYS N . n N 1 22 LYS 22 34 34 LYS LYS N . n N 1 23 NH2 23 35 35 NH2 NH2 N . n O 1 1 PHE 1 1 1 PHE PHE O . n O 1 2 PHE 2 2 2 PHE PHE O . n O 1 3 GLY 3 3 3 GLY GLY O . n O 1 4 SER 4 4 4 SER SER O . n O 1 5 ILE 5 5 5 ILE ILE O . n O 1 6 ILE 6 6 6 ILE ILE O . n O 1 7 GLY 7 7 7 GLY GLY O . n O 1 8 ALA 8 8 8 ALA ALA O . n O 1 9 LEU 9 9 9 LEU LEU O . n O 1 10 ALA 10 10 10 ALA ALA O . n O 1 11 LYS 11 11 11 LYS LYS O . n O 1 12 GLY 12 12 12 GLY GLY O . n O 1 13 LEU 13 13 13 LEU LEU O . n O 1 14 PRO 14 14 14 PRO PRO O . n O 1 15 SER 15 15 15 SER SER O . n O 1 16 LEU 16 16 16 LEU LEU O . n O 1 17 ILE 17 17 17 ILE ILE O . n O 1 18 SER 18 18 18 SER SER O . n O 1 19 LEU 19 19 19 LEU LEU O . n O 1 20 ILE 20 20 20 ILE ILE O . n O 1 21 LYS 21 21 21 LYS LYS O . n O 1 22 LYS 22 34 34 LYS LYS O . n O 1 23 NH2 23 35 35 NH2 NH2 O . n P 1 1 PHE 1 1 1 PHE PHE P . n P 1 2 PHE 2 2 2 PHE PHE P . n P 1 3 GLY 3 3 3 GLY GLY P . n P 1 4 SER 4 4 4 SER SER P . n P 1 5 ILE 5 5 5 ILE ILE P . n P 1 6 ILE 6 6 6 ILE ILE P . n P 1 7 GLY 7 7 7 GLY GLY P . n P 1 8 ALA 8 8 8 ALA ALA P . n P 1 9 LEU 9 9 9 LEU LEU P . n P 1 10 ALA 10 10 10 ALA ALA P . n P 1 11 LYS 11 11 11 LYS LYS P . n P 1 12 GLY 12 12 12 GLY GLY P . n P 1 13 LEU 13 13 13 LEU LEU P . n P 1 14 PRO 14 14 14 PRO PRO P . n P 1 15 SER 15 15 15 SER SER P . n P 1 16 LEU 16 16 16 LEU LEU P . n P 1 17 ILE 17 17 17 ILE ILE P . n P 1 18 SER 18 18 18 SER SER P . n P 1 19 LEU 19 19 19 LEU LEU P . n P 1 20 ILE 20 20 20 ILE ILE P . n P 1 21 LYS 21 21 21 LYS LYS P . n P 1 22 LYS 22 34 34 LYS LYS P . n P 1 23 NH2 23 35 35 NH2 NH2 P . n Q 1 1 PHE 1 1 1 PHE PHE Q . n Q 1 2 PHE 2 2 2 PHE PHE Q . n Q 1 3 GLY 3 3 3 GLY GLY Q . n Q 1 4 SER 4 4 4 SER SER Q . n Q 1 5 ILE 5 5 5 ILE ILE Q . n Q 1 6 ILE 6 6 6 ILE ILE Q . n Q 1 7 GLY 7 7 7 GLY GLY Q . n Q 1 8 ALA 8 8 8 ALA ALA Q . n Q 1 9 LEU 9 9 9 LEU LEU Q . n Q 1 10 ALA 10 10 10 ALA ALA Q . n Q 1 11 LYS 11 11 11 LYS LYS Q . n Q 1 12 GLY 12 12 12 GLY GLY Q . n Q 1 13 LEU 13 13 13 LEU LEU Q . n Q 1 14 PRO 14 14 14 PRO PRO Q . n Q 1 15 SER 15 15 15 SER SER Q . n Q 1 16 LEU 16 16 16 LEU LEU Q . n Q 1 17 ILE 17 17 17 ILE ILE Q . n Q 1 18 SER 18 18 18 SER SER Q . n Q 1 19 LEU 19 19 19 LEU LEU Q . n Q 1 20 ILE 20 20 20 ILE ILE Q . n Q 1 21 LYS 21 21 21 LYS LYS Q . n Q 1 22 LYS 22 34 34 LYS LYS Q . n Q 1 23 NH2 23 35 35 NH2 NH2 Q . n R 1 1 PHE 1 1 1 PHE PHE R . n R 1 2 PHE 2 2 2 PHE PHE R . n R 1 3 GLY 3 3 3 GLY GLY R . n R 1 4 SER 4 4 4 SER SER R . n R 1 5 ILE 5 5 5 ILE ILE R . n R 1 6 ILE 6 6 6 ILE ILE R . n R 1 7 GLY 7 7 7 GLY GLY R . n R 1 8 ALA 8 8 8 ALA ALA R . n R 1 9 LEU 9 9 9 LEU LEU R . n R 1 10 ALA 10 10 10 ALA ALA R . n R 1 11 LYS 11 11 11 LYS LYS R . n R 1 12 GLY 12 12 12 GLY GLY R . n R 1 13 LEU 13 13 13 LEU LEU R . n R 1 14 PRO 14 14 14 PRO PRO R . n R 1 15 SER 15 15 15 SER SER R . n R 1 16 LEU 16 16 16 LEU LEU R . n R 1 17 ILE 17 17 17 ILE ILE R . n R 1 18 SER 18 18 18 SER SER R . n R 1 19 LEU 19 19 19 LEU LEU R . n R 1 20 ILE 20 20 20 ILE ILE R . n R 1 21 LYS 21 21 21 LYS LYS R . n R 1 22 LYS 22 34 34 LYS LYS R . n R 1 23 NH2 23 35 35 NH2 NH2 R . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NH2 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NH2 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9S7Q _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9S7Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9S7Q _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9S7Q _struct.title 'Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 2 in PBS pH 6.5' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9S7Q _struct_keywords.text 'Amyloid, Antimicrobial, ANTIMICROBIAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 1 ? N N N 1 ? O N N 1 ? P N N 1 ? Q N N 1 ? R N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BR1C_NIDOK _struct_ref.pdbx_db_accession C0HL10 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code FFGSIIGALAKGLPSLISLIKK _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9S7Q A 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 2 1 9S7Q B 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 3 1 9S7Q C 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 4 1 9S7Q D 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 5 1 9S7Q E 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 6 1 9S7Q F 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 7 1 9S7Q G 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 8 1 9S7Q H 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 9 1 9S7Q I 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 10 1 9S7Q J 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 11 1 9S7Q K 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 12 1 9S7Q L 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 13 1 9S7Q M 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 14 1 9S7Q N 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 15 1 9S7Q O 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 16 1 9S7Q P 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 17 1 9S7Q Q 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 18 1 9S7Q R 1 ? 22 ? C0HL10 1 ? 22 ? 1 34 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9S7Q NH2 A 23 ? UNP C0HL10 ? ? amidation 35 1 2 9S7Q NH2 B 23 ? UNP C0HL10 ? ? amidation 35 2 3 9S7Q NH2 C 23 ? UNP C0HL10 ? ? amidation 35 3 4 9S7Q NH2 D 23 ? UNP C0HL10 ? ? amidation 35 4 5 9S7Q NH2 E 23 ? UNP C0HL10 ? ? amidation 35 5 6 9S7Q NH2 F 23 ? UNP C0HL10 ? ? amidation 35 6 7 9S7Q NH2 G 23 ? UNP C0HL10 ? ? amidation 35 7 8 9S7Q NH2 H 23 ? UNP C0HL10 ? ? amidation 35 8 9 9S7Q NH2 I 23 ? UNP C0HL10 ? ? amidation 35 9 10 9S7Q NH2 J 23 ? UNP C0HL10 ? ? amidation 35 10 11 9S7Q NH2 K 23 ? UNP C0HL10 ? ? amidation 35 11 12 9S7Q NH2 L 23 ? UNP C0HL10 ? ? amidation 35 12 13 9S7Q NH2 M 23 ? UNP C0HL10 ? ? amidation 35 13 14 9S7Q NH2 N 23 ? UNP C0HL10 ? ? amidation 35 14 15 9S7Q NH2 O 23 ? UNP C0HL10 ? ? amidation 35 15 16 9S7Q NH2 P 23 ? UNP C0HL10 ? ? amidation 35 16 17 9S7Q NH2 Q 23 ? UNP C0HL10 ? ? amidation 35 17 18 9S7Q NH2 R 23 ? UNP C0HL10 ? ? amidation 35 18 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 18-meric _pdbx_struct_assembly.oligomeric_count 18 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 22 C ? ? ? 1_555 A NH2 23 N ? ? A LYS 34 A NH2 35 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? B LYS 22 C ? ? ? 1_555 B NH2 23 N ? ? B LYS 34 B NH2 35 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? C LYS 22 C ? ? ? 1_555 C NH2 23 N ? ? C LYS 34 C NH2 35 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? D LYS 22 C ? ? ? 1_555 D NH2 23 N ? ? D LYS 34 D NH2 35 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale5 covale both ? E LYS 22 C ? ? ? 1_555 E NH2 23 N ? ? E LYS 34 E NH2 35 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? F LYS 22 C ? ? ? 1_555 F NH2 23 N ? ? F LYS 34 F NH2 35 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? G LYS 22 C ? ? ? 1_555 G NH2 23 N ? ? G LYS 34 G NH2 35 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? H LYS 22 C ? ? ? 1_555 H NH2 23 N ? ? H LYS 34 H NH2 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale9 covale both ? I LYS 22 C ? ? ? 1_555 I NH2 23 N ? ? I LYS 34 I NH2 35 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale10 covale both ? J LYS 22 C ? ? ? 1_555 J NH2 23 N ? ? J LYS 34 J NH2 35 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale11 covale both ? K LYS 22 C ? ? ? 1_555 K NH2 23 N ? ? K LYS 34 K NH2 35 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? L LYS 22 C ? ? ? 1_555 L NH2 23 N ? ? L LYS 34 L NH2 35 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale13 covale both ? M LYS 22 C ? ? ? 1_555 M NH2 23 N ? ? M LYS 34 M NH2 35 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale14 covale both ? N LYS 22 C ? ? ? 1_555 N NH2 23 N ? ? N LYS 34 N NH2 35 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale15 covale both ? O LYS 22 C ? ? ? 1_555 O NH2 23 N ? ? O LYS 34 O NH2 35 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale16 covale both ? P LYS 22 C ? ? ? 1_555 P NH2 23 N ? ? P LYS 34 P NH2 35 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale17 covale both ? Q LYS 22 C ? ? ? 1_555 Q NH2 23 N ? ? Q LYS 34 Q NH2 35 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale18 covale both ? R LYS 22 C ? ? ? 1_555 R NH2 23 N ? ? R LYS 34 R NH2 35 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 23 ? LYS A 22 ? NH2 A 35 ? 1_555 LYS A 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 2 NH2 B 23 ? LYS B 22 ? NH2 B 35 ? 1_555 LYS B 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 3 NH2 C 23 ? LYS C 22 ? NH2 C 35 ? 1_555 LYS C 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 4 NH2 D 23 ? LYS D 22 ? NH2 D 35 ? 1_555 LYS D 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 5 NH2 E 23 ? LYS E 22 ? NH2 E 35 ? 1_555 LYS E 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 6 NH2 F 23 ? LYS F 22 ? NH2 F 35 ? 1_555 LYS F 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 7 NH2 G 23 ? LYS G 22 ? NH2 G 35 ? 1_555 LYS G 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 8 NH2 H 23 ? LYS H 22 ? NH2 H 35 ? 1_555 LYS H 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 9 NH2 I 23 ? LYS I 22 ? NH2 I 35 ? 1_555 LYS I 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 10 NH2 J 23 ? LYS J 22 ? NH2 J 35 ? 1_555 LYS J 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 11 NH2 K 23 ? LYS K 22 ? NH2 K 35 ? 1_555 LYS K 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 12 NH2 L 23 ? LYS L 22 ? NH2 L 35 ? 1_555 LYS L 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 13 NH2 M 23 ? LYS M 22 ? NH2 M 35 ? 1_555 LYS M 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 14 NH2 N 23 ? LYS N 22 ? NH2 N 35 ? 1_555 LYS N 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 15 NH2 O 23 ? LYS O 22 ? NH2 O 35 ? 1_555 LYS O 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 16 NH2 P 23 ? LYS P 22 ? NH2 P 35 ? 1_555 LYS P 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 17 NH2 Q 23 ? LYS Q 22 ? NH2 Q 35 ? 1_555 LYS Q 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' 18 NH2 R 23 ? LYS R 22 ? NH2 R 35 ? 1_555 LYS R 34 ? 1_555 . . LYS 20 NH2 None 'Terminal amidation' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 3 ? AB5 ? 3 ? AB6 ? 3 ? AB7 ? 3 ? AB8 ? 3 ? AB9 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB5 1 2 ? parallel AB5 2 3 ? parallel AB6 1 2 ? parallel AB6 2 3 ? parallel AB7 1 2 ? parallel AB7 2 3 ? parallel AB8 1 2 ? parallel AB8 2 3 ? parallel AB9 1 2 ? parallel AB9 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 5 ? ILE A 6 ? ILE A 5 ILE A 6 AA1 2 ILE M 5 ? ILE M 6 ? ILE M 5 ILE M 6 AA1 3 ILE G 5 ? ILE G 6 ? ILE G 5 ILE G 6 AA2 1 LYS A 11 ? GLY A 12 ? LYS A 11 GLY A 12 AA2 2 LYS M 11 ? GLY M 12 ? LYS M 11 GLY M 12 AA2 3 LYS G 11 ? GLY G 12 ? LYS G 11 GLY G 12 AA3 1 ILE A 17 ? LYS A 21 ? ILE A 17 LYS A 21 AA3 2 ILE M 17 ? LYS M 21 ? ILE M 17 LYS M 21 AA3 3 ILE G 17 ? LYS G 21 ? ILE G 17 LYS G 21 AA4 1 ILE B 5 ? ILE B 6 ? ILE B 5 ILE B 6 AA4 2 ILE N 5 ? ILE N 6 ? ILE N 5 ILE N 6 AA4 3 ILE H 5 ? ILE H 6 ? ILE H 5 ILE H 6 AA5 1 LYS B 11 ? GLY B 12 ? LYS B 11 GLY B 12 AA5 2 LYS N 11 ? GLY N 12 ? LYS N 11 GLY N 12 AA5 3 LYS H 11 ? GLY H 12 ? LYS H 11 GLY H 12 AA6 1 ILE B 17 ? LYS B 21 ? ILE B 17 LYS B 21 AA6 2 ILE N 17 ? LYS N 21 ? ILE N 17 LYS N 21 AA6 3 ILE H 17 ? LYS H 21 ? ILE H 17 LYS H 21 AA7 1 ILE C 5 ? ILE C 6 ? ILE C 5 ILE C 6 AA7 2 ILE O 5 ? ILE O 6 ? ILE O 5 ILE O 6 AA7 3 ILE I 5 ? ILE I 6 ? ILE I 5 ILE I 6 AA8 1 LYS C 11 ? GLY C 12 ? LYS C 11 GLY C 12 AA8 2 LYS O 11 ? GLY O 12 ? LYS O 11 GLY O 12 AA8 3 LYS I 11 ? GLY I 12 ? LYS I 11 GLY I 12 AA9 1 ILE C 17 ? LYS C 21 ? ILE C 17 LYS C 21 AA9 2 ILE O 17 ? LYS O 21 ? ILE O 17 LYS O 21 AA9 3 ILE I 17 ? LYS I 21 ? ILE I 17 LYS I 21 AB1 1 ILE D 5 ? ILE D 6 ? ILE D 5 ILE D 6 AB1 2 ILE P 5 ? ILE P 6 ? ILE P 5 ILE P 6 AB1 3 ILE J 5 ? ILE J 6 ? ILE J 5 ILE J 6 AB2 1 LYS D 11 ? GLY D 12 ? LYS D 11 GLY D 12 AB2 2 LYS P 11 ? GLY P 12 ? LYS P 11 GLY P 12 AB2 3 LYS J 11 ? GLY J 12 ? LYS J 11 GLY J 12 AB3 1 ILE D 17 ? LYS D 21 ? ILE D 17 LYS D 21 AB3 2 ILE P 17 ? LYS P 21 ? ILE P 17 LYS P 21 AB3 3 ILE J 17 ? LYS J 21 ? ILE J 17 LYS J 21 AB4 1 ILE E 5 ? ILE E 6 ? ILE E 5 ILE E 6 AB4 2 ILE Q 5 ? ILE Q 6 ? ILE Q 5 ILE Q 6 AB4 3 ILE K 5 ? ILE K 6 ? ILE K 5 ILE K 6 AB5 1 LYS E 11 ? GLY E 12 ? LYS E 11 GLY E 12 AB5 2 LYS Q 11 ? GLY Q 12 ? LYS Q 11 GLY Q 12 AB5 3 LYS K 11 ? GLY K 12 ? LYS K 11 GLY K 12 AB6 1 ILE E 17 ? LYS E 21 ? ILE E 17 LYS E 21 AB6 2 ILE Q 17 ? LYS Q 21 ? ILE Q 17 LYS Q 21 AB6 3 ILE K 17 ? LYS K 21 ? ILE K 17 LYS K 21 AB7 1 ILE F 5 ? ILE F 6 ? ILE F 5 ILE F 6 AB7 2 ILE R 5 ? ILE R 6 ? ILE R 5 ILE R 6 AB7 3 ILE L 5 ? ILE L 6 ? ILE L 5 ILE L 6 AB8 1 LYS F 11 ? GLY F 12 ? LYS F 11 GLY F 12 AB8 2 LYS R 11 ? GLY R 12 ? LYS R 11 GLY R 12 AB8 3 LYS L 11 ? GLY L 12 ? LYS L 11 GLY L 12 AB9 1 ILE F 17 ? LYS F 21 ? ILE F 17 LYS F 21 AB9 2 ILE R 17 ? LYS R 21 ? ILE R 17 LYS R 21 AB9 3 ILE L 17 ? LYS L 21 ? ILE L 17 LYS L 21 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 5 ? N ILE A 5 O ILE M 6 ? O ILE M 6 AA1 2 3 O ILE M 5 ? O ILE M 5 N ILE G 6 ? N ILE G 6 AA2 1 2 N LYS A 11 ? N LYS A 11 O GLY M 12 ? O GLY M 12 AA2 2 3 O LYS M 11 ? O LYS M 11 N GLY G 12 ? N GLY G 12 AA3 1 2 N SER A 18 ? N SER A 18 O ILE M 17 ? O ILE M 17 AA3 2 3 O SER M 18 ? O SER M 18 N ILE G 17 ? N ILE G 17 AA4 1 2 N ILE B 5 ? N ILE B 5 O ILE N 6 ? O ILE N 6 AA4 2 3 O ILE N 5 ? O ILE N 5 N ILE H 6 ? N ILE H 6 AA5 1 2 N LYS B 11 ? N LYS B 11 O GLY N 12 ? O GLY N 12 AA5 2 3 O LYS N 11 ? O LYS N 11 N GLY H 12 ? N GLY H 12 AA6 1 2 N SER B 18 ? N SER B 18 O ILE N 17 ? O ILE N 17 AA6 2 3 O SER N 18 ? O SER N 18 N ILE H 17 ? N ILE H 17 AA7 1 2 N ILE C 5 ? N ILE C 5 O ILE O 6 ? O ILE O 6 AA7 2 3 O ILE O 5 ? O ILE O 5 N ILE I 6 ? N ILE I 6 AA8 1 2 N LYS C 11 ? N LYS C 11 O GLY O 12 ? O GLY O 12 AA8 2 3 O LYS O 11 ? O LYS O 11 N GLY I 12 ? N GLY I 12 AA9 1 2 N SER C 18 ? N SER C 18 O ILE O 17 ? O ILE O 17 AA9 2 3 O SER O 18 ? O SER O 18 N ILE I 17 ? N ILE I 17 AB1 1 2 N ILE D 5 ? N ILE D 5 O ILE P 6 ? O ILE P 6 AB1 2 3 O ILE P 5 ? O ILE P 5 N ILE J 6 ? N ILE J 6 AB2 1 2 N LYS D 11 ? N LYS D 11 O GLY P 12 ? O GLY P 12 AB2 2 3 O LYS P 11 ? O LYS P 11 N GLY J 12 ? N GLY J 12 AB3 1 2 N SER D 18 ? N SER D 18 O ILE P 17 ? O ILE P 17 AB3 2 3 O SER P 18 ? O SER P 18 N ILE J 17 ? N ILE J 17 AB4 1 2 N ILE E 5 ? N ILE E 5 O ILE Q 6 ? O ILE Q 6 AB4 2 3 O ILE Q 5 ? O ILE Q 5 N ILE K 6 ? N ILE K 6 AB5 1 2 N LYS E 11 ? N LYS E 11 O GLY Q 12 ? O GLY Q 12 AB5 2 3 O LYS Q 11 ? O LYS Q 11 N GLY K 12 ? N GLY K 12 AB6 1 2 N SER E 18 ? N SER E 18 O ILE Q 17 ? O ILE Q 17 AB6 2 3 O SER Q 18 ? O SER Q 18 N ILE K 17 ? N ILE K 17 AB7 1 2 N ILE F 5 ? N ILE F 5 O ILE R 6 ? O ILE R 6 AB7 2 3 O ILE R 5 ? O ILE R 5 N ILE L 6 ? N ILE L 6 AB8 1 2 N LYS F 11 ? N LYS F 11 O GLY R 12 ? O GLY R 12 AB8 2 3 O LYS R 11 ? O LYS R 11 N GLY L 12 ? N GLY L 12 AB9 1 2 N SER F 18 ? N SER F 18 O ILE R 17 ? O ILE R 17 AB9 2 3 O SER R 18 ? O SER R 18 N ILE L 17 ? N ILE L 17 # _pdbx_entry_details.entry_id 9S7Q _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 13 ? ? -118.52 54.08 2 1 LEU B 13 ? ? -119.03 55.16 3 1 LEU C 13 ? ? -118.55 54.73 4 1 LEU D 13 ? ? -118.56 54.65 5 1 LEU E 13 ? ? -118.91 54.90 6 1 LEU F 13 ? ? -118.57 54.78 7 1 LEU G 13 ? ? -118.46 54.02 8 1 LEU H 13 ? ? -119.05 55.09 9 1 LEU I 13 ? ? -118.48 54.79 10 1 LEU J 13 ? ? -118.50 54.65 11 1 LEU K 13 ? ? -118.96 54.80 12 1 LEU L 13 ? ? -118.55 54.79 13 1 LEU M 13 ? ? -118.49 54.06 14 1 LEU N 13 ? ? -118.96 55.13 15 1 LEU O 13 ? ? -118.55 54.78 16 1 LEU P 13 ? ? -118.54 54.65 17 1 LEU Q 13 ? ? -118.91 54.84 18 1 LEU R 13 ? ? -118.58 54.78 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9S7Q _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details 'De novo generated in Coot' _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name Other _em_3d_fitting_list.type other _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 9S7Q _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.28 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 312286 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '1xPBS pH 6.5 from Sigma Aldrich' _em_buffer.pH 6.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name Brevinin-1OKc _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9S7Q _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9S7Q _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9S7Q _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 GLY N N N N 14 GLY CA C N N 15 GLY C C N N 16 GLY O O N N 17 GLY OXT O N N 18 GLY H H N N 19 GLY H2 H N N 20 GLY HA2 H N N 21 GLY HA3 H N N 22 GLY HXT H N N 23 ILE N N N N 24 ILE CA C N S 25 ILE C C N N 26 ILE O O N N 27 ILE CB C N S 28 ILE CG1 C N N 29 ILE CG2 C N N 30 ILE CD1 C N N 31 ILE OXT O N N 32 ILE H H N N 33 ILE H2 H N N 34 ILE HA H N N 35 ILE HB H N N 36 ILE HG12 H N N 37 ILE HG13 H N N 38 ILE HG21 H N N 39 ILE HG22 H N N 40 ILE HG23 H N N 41 ILE HD11 H N N 42 ILE HD12 H N N 43 ILE HD13 H N N 44 ILE HXT H N N 45 LEU N N N N 46 LEU CA C N S 47 LEU C C N N 48 LEU O O N N 49 LEU CB C N N 50 LEU CG C N N 51 LEU CD1 C N N 52 LEU CD2 C N N 53 LEU OXT O N N 54 LEU H H N N 55 LEU H2 H N N 56 LEU HA H N N 57 LEU HB2 H N N 58 LEU HB3 H N N 59 LEU HG H N N 60 LEU HD11 H N N 61 LEU HD12 H N N 62 LEU HD13 H N N 63 LEU HD21 H N N 64 LEU HD22 H N N 65 LEU HD23 H N N 66 LEU HXT H N N 67 LYS N N N N 68 LYS CA C N S 69 LYS C C N N 70 LYS O O N N 71 LYS CB C N N 72 LYS CG C N N 73 LYS CD C N N 74 LYS CE C N N 75 LYS NZ N N N 76 LYS OXT O N N 77 LYS H H N N 78 LYS H2 H N N 79 LYS HA H N N 80 LYS HB2 H N N 81 LYS HB3 H N N 82 LYS HG2 H N N 83 LYS HG3 H N N 84 LYS HD2 H N N 85 LYS HD3 H N N 86 LYS HE2 H N N 87 LYS HE3 H N N 88 LYS HZ1 H N N 89 LYS HZ2 H N N 90 LYS HZ3 H N N 91 LYS HXT H N N 92 NH2 N N N N 93 NH2 HN1 H N N 94 NH2 HN2 H N N 95 PHE N N N N 96 PHE CA C N S 97 PHE C C N N 98 PHE O O N N 99 PHE CB C N N 100 PHE CG C Y N 101 PHE CD1 C Y N 102 PHE CD2 C Y N 103 PHE CE1 C Y N 104 PHE CE2 C Y N 105 PHE CZ C Y N 106 PHE OXT O N N 107 PHE H H N N 108 PHE H2 H N N 109 PHE HA H N N 110 PHE HB2 H N N 111 PHE HB3 H N N 112 PHE HD1 H N N 113 PHE HD2 H N N 114 PHE HE1 H N N 115 PHE HE2 H N N 116 PHE HZ H N N 117 PHE HXT H N N 118 PRO N N N N 119 PRO CA C N S 120 PRO C C N N 121 PRO O O N N 122 PRO CB C N N 123 PRO CG C N N 124 PRO CD C N N 125 PRO OXT O N N 126 PRO H H N N 127 PRO HA H N N 128 PRO HB2 H N N 129 PRO HB3 H N N 130 PRO HG2 H N N 131 PRO HG3 H N N 132 PRO HD2 H N N 133 PRO HD3 H N N 134 PRO HXT H N N 135 SER N N N N 136 SER CA C N S 137 SER C C N N 138 SER O O N N 139 SER CB C N N 140 SER OG O N N 141 SER OXT O N N 142 SER H H N N 143 SER H2 H N N 144 SER HA H N N 145 SER HB2 H N N 146 SER HB3 H N N 147 SER HG H N N 148 SER HXT H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 GLY N CA sing N N 13 GLY N H sing N N 14 GLY N H2 sing N N 15 GLY CA C sing N N 16 GLY CA HA2 sing N N 17 GLY CA HA3 sing N N 18 GLY C O doub N N 19 GLY C OXT sing N N 20 GLY OXT HXT sing N N 21 ILE N CA sing N N 22 ILE N H sing N N 23 ILE N H2 sing N N 24 ILE CA C sing N N 25 ILE CA CB sing N N 26 ILE CA HA sing N N 27 ILE C O doub N N 28 ILE C OXT sing N N 29 ILE CB CG1 sing N N 30 ILE CB CG2 sing N N 31 ILE CB HB sing N N 32 ILE CG1 CD1 sing N N 33 ILE CG1 HG12 sing N N 34 ILE CG1 HG13 sing N N 35 ILE CG2 HG21 sing N N 36 ILE CG2 HG22 sing N N 37 ILE CG2 HG23 sing N N 38 ILE CD1 HD11 sing N N 39 ILE CD1 HD12 sing N N 40 ILE CD1 HD13 sing N N 41 ILE OXT HXT sing N N 42 LEU N CA sing N N 43 LEU N H sing N N 44 LEU N H2 sing N N 45 LEU CA C sing N N 46 LEU CA CB sing N N 47 LEU CA HA sing N N 48 LEU C O doub N N 49 LEU C OXT sing N N 50 LEU CB CG sing N N 51 LEU CB HB2 sing N N 52 LEU CB HB3 sing N N 53 LEU CG CD1 sing N N 54 LEU CG CD2 sing N N 55 LEU CG HG sing N N 56 LEU CD1 HD11 sing N N 57 LEU CD1 HD12 sing N N 58 LEU CD1 HD13 sing N N 59 LEU CD2 HD21 sing N N 60 LEU CD2 HD22 sing N N 61 LEU CD2 HD23 sing N N 62 LEU OXT HXT sing N N 63 LYS N CA sing N N 64 LYS N H sing N N 65 LYS N H2 sing N N 66 LYS CA C sing N N 67 LYS CA CB sing N N 68 LYS CA HA sing N N 69 LYS C O doub N N 70 LYS C OXT sing N N 71 LYS CB CG sing N N 72 LYS CB HB2 sing N N 73 LYS CB HB3 sing N N 74 LYS CG CD sing N N 75 LYS CG HG2 sing N N 76 LYS CG HG3 sing N N 77 LYS CD CE sing N N 78 LYS CD HD2 sing N N 79 LYS CD HD3 sing N N 80 LYS CE NZ sing N N 81 LYS CE HE2 sing N N 82 LYS CE HE3 sing N N 83 LYS NZ HZ1 sing N N 84 LYS NZ HZ2 sing N N 85 LYS NZ HZ3 sing N N 86 LYS OXT HXT sing N N 87 NH2 N HN1 sing N N 88 NH2 N HN2 sing N N 89 PHE N CA sing N N 90 PHE N H sing N N 91 PHE N H2 sing N N 92 PHE CA C sing N N 93 PHE CA CB sing N N 94 PHE CA HA sing N N 95 PHE C O doub N N 96 PHE C OXT sing N N 97 PHE CB CG sing N N 98 PHE CB HB2 sing N N 99 PHE CB HB3 sing N N 100 PHE CG CD1 doub Y N 101 PHE CG CD2 sing Y N 102 PHE CD1 CE1 sing Y N 103 PHE CD1 HD1 sing N N 104 PHE CD2 CE2 doub Y N 105 PHE CD2 HD2 sing N N 106 PHE CE1 CZ doub Y N 107 PHE CE1 HE1 sing N N 108 PHE CE2 CZ sing Y N 109 PHE CE2 HE2 sing N N 110 PHE CZ HZ sing N N 111 PHE OXT HXT sing N N 112 PRO N CA sing N N 113 PRO N CD sing N N 114 PRO N H sing N N 115 PRO CA C sing N N 116 PRO CA CB sing N N 117 PRO CA HA sing N N 118 PRO C O doub N N 119 PRO C OXT sing N N 120 PRO CB CG sing N N 121 PRO CB HB2 sing N N 122 PRO CB HB3 sing N N 123 PRO CG CD sing N N 124 PRO CG HG2 sing N N 125 PRO CG HG3 sing N N 126 PRO CD HD2 sing N N 127 PRO CD HD3 sing N N 128 PRO OXT HXT sing N N 129 SER N CA sing N N 130 SER N H sing N N 131 SER N H2 sing N N 132 SER CA C sing N N 133 SER CA CB sing N N 134 SER CA HA sing N N 135 SER C O doub N N 136 SER C OXT sing N N 137 SER CB OG sing N N 138 SER CB HB2 sing N N 139 SER CB HB3 sing N N 140 SER OG HG sing N N 141 SER OXT HXT sing N N 142 # _em_admin.current_status REL _em_admin.deposition_date 2025-08-05 _em_admin.deposition_site PDBE _em_admin.entry_id 9S7Q _em_admin.last_update 2026-08-26 _em_admin.map_release_date 2026-08-26 _em_admin.title 'Cryo-EM structure of amyloidogenic antimicrobial peptide Brevinin-1OKc polymorph 2 in PBS pH 6.5' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 156870 _em_entity_assembly_naturalsource.organism 'Nidirana okinavana' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit 59.5 _em_helical_entity.axial_rise_per_subunit 1.6 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 328282 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? Topaz ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1 ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.9.8.92 ? OTHER ? 8 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? Servalcat ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 5 ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 5 ? CLASSIFICATION ? 12 1 ? ? RELION 5 ? RECONSTRUCTION ? 13 1 ? ? RELION 5 ? # _em_specimen.concentration ? _em_specimen.details 'This sample was fibrillated in PBS pH 6.5' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Research Council (ERC)' 'European Union' 101087140 1 'Israel Science Foundation' Israel 2111/20 2 'Volkswagen Foundation' Germany '76251-4659/2022 (ZN 4042)' 3 'German Research Foundation (DFG)' Germany 152/772-1 4 'German Research Foundation (DFG)' Germany 152/774-1 5 'German Research Foundation (DFG)' Germany 152/775-1 6 'German Research Foundation (DFG)' Germany 152/776-1 7 'German Research Foundation (DFG)' Germany '152/777-1 FUGG' 8 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9S7Q _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #