HEADER ISOMERASE 12-AUG-25 9SCY TITLE THE R90H CLINICAL VARIANT OF HUMAN BISPHOSPHOGLYCERATE MUTASE (HBPGM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BISPHOSPHOGLYCERATE MUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: BPGM,2,3-BISPHOSPHOGLYCERATE MUTASE,ERYTHROCYTE,3- COMPND 5 BISPHOSPHOGLYCERATE SYNTHASE,3-DIPHOSPHOGLYCERATE MUTASE,DPGM,BPG- COMPND 6 DEPENDENT PGAM; COMPND 7 EC: 5.4.2.4,5.4.2.11; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: R90H MUTANT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BPGM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HUMAN BISPHOSPHOGLYCERATE MUTASE (HBPGM), ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,S.MARTINEZ-RODRIGUEZ REVDAT 1 18-MAR-26 9SCY 0 JRNL AUTH S.MARTINEZ-RODRIGUEZ,J.M.TORRES,P.SANCHEZ,E.ORTEGA, JRNL AUTH 2 J.A.GAVIRA JRNL TITL NEW HUMAN BISPHOSPHOGLYCERATE MUTASE STRUCTURES PROVIDE JRNL TITL 2 INSIGHTS INTO THE STRUCTURAL BASIS OF BPGM DEFICIENCY AND JRNL TITL 3 CITRATE INHIBITION. JRNL REF INT.J.BIOL.MACROMOL. V. 338 49491 2026 JRNL REFN ISSN 0141-8130 JRNL PMID 41354380 JRNL DOI 10.1016/J.IJBIOMAC.2025.149491 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 58029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.0100 - 5.5200 0.92 2869 154 0.1609 0.1605 REMARK 3 2 5.5200 - 4.3800 0.94 2946 152 0.1461 0.1856 REMARK 3 3 4.3800 - 3.8300 0.87 2696 158 0.1510 0.1671 REMARK 3 4 3.8300 - 3.4800 0.85 2635 149 0.1764 0.2259 REMARK 3 5 3.4800 - 3.2300 0.85 2644 133 0.2052 0.2459 REMARK 3 6 3.2300 - 3.0400 0.96 3021 172 0.2166 0.2505 REMARK 3 7 3.0400 - 2.8800 0.95 2949 178 0.2374 0.2773 REMARK 3 8 2.8800 - 2.7600 0.94 2896 147 0.2347 0.2729 REMARK 3 9 2.7600 - 2.7000 0.94 1701 80 0.2213 0.2590 REMARK 3 10 2.6500 - 2.5600 0.91 2789 146 0.2282 0.2546 REMARK 3 11 2.5600 - 2.4800 0.94 2972 159 0.2268 0.2640 REMARK 3 12 2.4800 - 2.4100 0.95 2900 166 0.2220 0.2624 REMARK 3 13 2.4100 - 2.3500 0.95 3019 170 0.2196 0.3020 REMARK 3 14 2.3500 - 2.2900 0.94 2914 143 0.2324 0.2337 REMARK 3 15 2.2900 - 2.2400 0.49 1522 78 0.2308 0.3104 REMARK 3 16 2.2400 - 2.1900 0.94 2945 144 0.2431 0.2675 REMARK 3 17 2.1900 - 2.1500 0.93 2877 144 0.2454 0.3192 REMARK 3 18 2.1500 - 2.1100 0.93 2993 114 0.2586 0.3046 REMARK 3 19 2.1100 - 2.0900 0.90 1388 66 0.2615 0.3116 REMARK 3 20 2.0500 - 2.0300 0.84 1541 82 0.2924 0.3703 REMARK 3 21 2.0300 - 2.0000 0.94 2931 146 0.2976 0.3567 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8762 REMARK 3 ANGLE : 0.498 11938 REMARK 3 CHIRALITY : 0.039 1258 REMARK 3 PLANARITY : 0.005 1584 REMARK 3 DIHEDRAL : 15.610 3418 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 2 THROUGH 251) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4353 1.7396 41.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.3027 T22: 0.4076 REMARK 3 T33: 0.4014 T12: -0.0746 REMARK 3 T13: -0.0321 T23: 0.1550 REMARK 3 L TENSOR REMARK 3 L11: 1.7851 L22: 2.3008 REMARK 3 L33: 3.9040 L12: 0.0071 REMARK 3 L13: -0.6994 L23: -0.0249 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: 0.5543 S13: 0.4721 REMARK 3 S21: -0.3538 S22: 0.1544 S23: -0.0596 REMARK 3 S31: -0.0406 S32: 0.1217 S33: -0.0679 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 2 THROUGH 248) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3973 -12.4462 -30.0453 REMARK 3 T TENSOR REMARK 3 T11: 0.2848 T22: 0.3764 REMARK 3 T33: 0.2861 T12: 0.0386 REMARK 3 T13: 0.0003 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 2.3185 L22: 2.2551 REMARK 3 L33: 3.5781 L12: -0.2777 REMARK 3 L13: -1.0198 L23: 0.2981 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: 0.5123 S13: -0.1604 REMARK 3 S21: -0.3788 S22: -0.2267 S23: 0.1293 REMARK 3 S31: -0.0533 S32: -0.0908 S33: 0.1972 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 252) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5955 0.3291 -0.0047 REMARK 3 T TENSOR REMARK 3 T11: 0.3123 T22: 0.3387 REMARK 3 T33: 0.3857 T12: 0.0141 REMARK 3 T13: -0.0429 T23: -0.1189 REMARK 3 L TENSOR REMARK 3 L11: 1.7822 L22: 2.0657 REMARK 3 L33: 3.0700 L12: -0.0122 REMARK 3 L13: -0.8825 L23: -0.1878 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: -0.1886 S13: 0.2980 REMARK 3 S21: 0.1935 S22: 0.0180 S23: 0.1657 REMARK 3 S31: 0.0571 S32: -0.1981 S33: -0.0452 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 249) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3321 -9.6517 71.8656 REMARK 3 T TENSOR REMARK 3 T11: 0.2346 T22: 0.2046 REMARK 3 T33: 0.2354 T12: -0.0080 REMARK 3 T13: -0.0207 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.4102 L22: 2.0707 REMARK 3 L33: 2.8108 L12: 0.0095 REMARK 3 L13: -0.8526 L23: 0.0400 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.3655 S13: -0.0144 REMARK 3 S21: 0.2992 S22: -0.0826 S23: -0.0681 REMARK 3 S31: -0.0350 S32: 0.0779 S33: 0.0825 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9SCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1292149890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 (BUILT REMARK 200 20220110) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 144.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : 0.02700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.9.02 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE PH 5.6, 30% W/V PEG 4K, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 253 REMARK 465 VAL A 254 REMARK 465 LYS A 255 REMARK 465 GLN A 256 REMARK 465 ALA A 257 REMARK 465 LYS A 258 REMARK 465 LYS A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 MET B 1 REMARK 465 ASP B 250 REMARK 465 GLN B 251 REMARK 465 GLY B 252 REMARK 465 LYS B 253 REMARK 465 VAL B 254 REMARK 465 LYS B 255 REMARK 465 GLN B 256 REMARK 465 ALA B 257 REMARK 465 LYS B 258 REMARK 465 LYS B 259 REMARK 465 LEU B 260 REMARK 465 GLU B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 MET C 1 REMARK 465 GLY C 252 REMARK 465 LYS C 253 REMARK 465 VAL C 254 REMARK 465 LYS C 255 REMARK 465 GLN C 256 REMARK 465 ALA C 257 REMARK 465 LYS C 258 REMARK 465 LYS C 259 REMARK 465 LEU C 260 REMARK 465 GLU C 261 REMARK 465 HIS C 262 REMARK 465 HIS C 263 REMARK 465 HIS C 264 REMARK 465 HIS C 265 REMARK 465 HIS C 266 REMARK 465 HIS C 267 REMARK 465 MET D 1 REMARK 465 GLU D 249 REMARK 465 ASP D 250 REMARK 465 GLN D 251 REMARK 465 GLY D 252 REMARK 465 LYS D 253 REMARK 465 VAL D 254 REMARK 465 LYS D 255 REMARK 465 GLN D 256 REMARK 465 ALA D 257 REMARK 465 LYS D 258 REMARK 465 LYS D 259 REMARK 465 LEU D 260 REMARK 465 GLU D 261 REMARK 465 HIS D 262 REMARK 465 HIS D 263 REMARK 465 HIS D 264 REMARK 465 HIS D 265 REMARK 465 HIS D 266 REMARK 465 HIS D 267 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 23 -62.40 -96.19 REMARK 500 SER A 24 -124.51 58.37 REMARK 500 HIS A 90 124.20 -33.23 REMARK 500 ILE A 136 -60.63 -91.08 REMARK 500 ALA A 187 -144.07 -131.15 REMARK 500 CYS B 23 -64.41 -96.90 REMARK 500 SER B 24 -124.01 59.74 REMARK 500 HIS B 90 121.39 -27.73 REMARK 500 ILE B 136 -60.57 -90.49 REMARK 500 ALA B 187 -146.33 -130.68 REMARK 500 CYS C 23 -65.48 -97.65 REMARK 500 SER C 24 -123.25 59.86 REMARK 500 HIS C 90 120.89 -37.48 REMARK 500 ALA C 187 -144.01 -127.77 REMARK 500 ASP C 223 -157.99 -93.71 REMARK 500 ASP C 223 -157.84 -93.71 REMARK 500 TRP D 16 -7.87 -59.47 REMARK 500 ASN D 20 67.05 28.17 REMARK 500 ASN D 20 69.55 24.92 REMARK 500 CYS D 23 -64.10 -90.55 REMARK 500 SER D 24 -122.72 60.88 REMARK 500 HIS D 90 121.27 -29.44 REMARK 500 ALA D 187 -148.15 -127.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9SCV RELATED DB: PDB REMARK 900 RELATED ID: 9SCX RELATED DB: PDB REMARK 900 RELATED ID: 9SD0 RELATED DB: PDB REMARK 900 RELATED ID: 9SD1 RELATED DB: PDB DBREF 9SCY A 1 259 UNP P07738 PMGE_HUMAN 1 259 DBREF 9SCY B 1 259 UNP P07738 PMGE_HUMAN 1 259 DBREF 9SCY C 1 259 UNP P07738 PMGE_HUMAN 1 259 DBREF 9SCY D 1 259 UNP P07738 PMGE_HUMAN 1 259 SEQADV 9SCY HIS A 90 UNP P07738 ARG 90 ENGINEERED MUTATION SEQADV 9SCY LEU A 260 UNP P07738 EXPRESSION TAG SEQADV 9SCY GLU A 261 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS A 262 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS A 263 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS A 264 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS A 265 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS A 266 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS A 267 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS B 90 UNP P07738 ARG 90 ENGINEERED MUTATION SEQADV 9SCY LEU B 260 UNP P07738 EXPRESSION TAG SEQADV 9SCY GLU B 261 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS B 262 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS B 263 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS B 264 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS B 265 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS B 266 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS B 267 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS C 90 UNP P07738 ARG 90 ENGINEERED MUTATION SEQADV 9SCY LEU C 260 UNP P07738 EXPRESSION TAG SEQADV 9SCY GLU C 261 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS C 262 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS C 263 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS C 264 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS C 265 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS C 266 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS C 267 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS D 90 UNP P07738 ARG 90 ENGINEERED MUTATION SEQADV 9SCY LEU D 260 UNP P07738 EXPRESSION TAG SEQADV 9SCY GLU D 261 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS D 262 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS D 263 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS D 264 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS D 265 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS D 266 UNP P07738 EXPRESSION TAG SEQADV 9SCY HIS D 267 UNP P07738 EXPRESSION TAG SEQRES 1 A 267 MET SER LYS TYR LYS LEU ILE MET LEU ARG HIS GLY GLU SEQRES 2 A 267 GLY ALA TRP ASN LYS GLU ASN ARG PHE CYS SER TRP VAL SEQRES 3 A 267 ASP GLN LYS LEU ASN SER GLU GLY MET GLU GLU ALA ARG SEQRES 4 A 267 ASN CYS GLY LYS GLN LEU LYS ALA LEU ASN PHE GLU PHE SEQRES 5 A 267 ASP LEU VAL PHE THR SER VAL LEU ASN ARG SER ILE HIS SEQRES 6 A 267 THR ALA TRP LEU ILE LEU GLU GLU LEU GLY GLN GLU TRP SEQRES 7 A 267 VAL PRO VAL GLU SER SER TRP ARG LEU ASN GLU HIS HIS SEQRES 8 A 267 TYR GLY ALA LEU ILE GLY LEU ASN ARG GLU GLN MET ALA SEQRES 9 A 267 LEU ASN HIS GLY GLU GLU GLN VAL ARG LEU TRP ARG ARG SEQRES 10 A 267 SER TYR ASN VAL THR PRO PRO PRO ILE GLU GLU SER HIS SEQRES 11 A 267 PRO TYR TYR GLN GLU ILE TYR ASN ASP ARG ARG TYR LYS SEQRES 12 A 267 VAL CYS ASP VAL PRO LEU ASP GLN LEU PRO ARG SER GLU SEQRES 13 A 267 SER LEU LYS ASP VAL LEU GLU ARG LEU LEU PRO TYR TRP SEQRES 14 A 267 ASN GLU ARG ILE ALA PRO GLU VAL LEU ARG GLY LYS THR SEQRES 15 A 267 ILE LEU ILE SER ALA HIS GLY ASN SER SER ARG ALA LEU SEQRES 16 A 267 LEU LYS HIS LEU GLU GLY ILE SER ASP GLU ASP ILE ILE SEQRES 17 A 267 ASN ILE THR LEU PRO THR GLY VAL PRO ILE LEU LEU GLU SEQRES 18 A 267 LEU ASP GLU ASN LEU ARG ALA VAL GLY PRO HIS GLN PHE SEQRES 19 A 267 LEU GLY ASP GLN GLU ALA ILE GLN ALA ALA ILE LYS LYS SEQRES 20 A 267 VAL GLU ASP GLN GLY LYS VAL LYS GLN ALA LYS LYS LEU SEQRES 21 A 267 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 267 MET SER LYS TYR LYS LEU ILE MET LEU ARG HIS GLY GLU SEQRES 2 B 267 GLY ALA TRP ASN LYS GLU ASN ARG PHE CYS SER TRP VAL SEQRES 3 B 267 ASP GLN LYS LEU ASN SER GLU GLY MET GLU GLU ALA ARG SEQRES 4 B 267 ASN CYS GLY LYS GLN LEU LYS ALA LEU ASN PHE GLU PHE SEQRES 5 B 267 ASP LEU VAL PHE THR SER VAL LEU ASN ARG SER ILE HIS SEQRES 6 B 267 THR ALA TRP LEU ILE LEU GLU GLU LEU GLY GLN GLU TRP SEQRES 7 B 267 VAL PRO VAL GLU SER SER TRP ARG LEU ASN GLU HIS HIS SEQRES 8 B 267 TYR GLY ALA LEU ILE GLY LEU ASN ARG GLU GLN MET ALA SEQRES 9 B 267 LEU ASN HIS GLY GLU GLU GLN VAL ARG LEU TRP ARG ARG SEQRES 10 B 267 SER TYR ASN VAL THR PRO PRO PRO ILE GLU GLU SER HIS SEQRES 11 B 267 PRO TYR TYR GLN GLU ILE TYR ASN ASP ARG ARG TYR LYS SEQRES 12 B 267 VAL CYS ASP VAL PRO LEU ASP GLN LEU PRO ARG SER GLU SEQRES 13 B 267 SER LEU LYS ASP VAL LEU GLU ARG LEU LEU PRO TYR TRP SEQRES 14 B 267 ASN GLU ARG ILE ALA PRO GLU VAL LEU ARG GLY LYS THR SEQRES 15 B 267 ILE LEU ILE SER ALA HIS GLY ASN SER SER ARG ALA LEU SEQRES 16 B 267 LEU LYS HIS LEU GLU GLY ILE SER ASP GLU ASP ILE ILE SEQRES 17 B 267 ASN ILE THR LEU PRO THR GLY VAL PRO ILE LEU LEU GLU SEQRES 18 B 267 LEU ASP GLU ASN LEU ARG ALA VAL GLY PRO HIS GLN PHE SEQRES 19 B 267 LEU GLY ASP GLN GLU ALA ILE GLN ALA ALA ILE LYS LYS SEQRES 20 B 267 VAL GLU ASP GLN GLY LYS VAL LYS GLN ALA LYS LYS LEU SEQRES 21 B 267 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 267 MET SER LYS TYR LYS LEU ILE MET LEU ARG HIS GLY GLU SEQRES 2 C 267 GLY ALA TRP ASN LYS GLU ASN ARG PHE CYS SER TRP VAL SEQRES 3 C 267 ASP GLN LYS LEU ASN SER GLU GLY MET GLU GLU ALA ARG SEQRES 4 C 267 ASN CYS GLY LYS GLN LEU LYS ALA LEU ASN PHE GLU PHE SEQRES 5 C 267 ASP LEU VAL PHE THR SER VAL LEU ASN ARG SER ILE HIS SEQRES 6 C 267 THR ALA TRP LEU ILE LEU GLU GLU LEU GLY GLN GLU TRP SEQRES 7 C 267 VAL PRO VAL GLU SER SER TRP ARG LEU ASN GLU HIS HIS SEQRES 8 C 267 TYR GLY ALA LEU ILE GLY LEU ASN ARG GLU GLN MET ALA SEQRES 9 C 267 LEU ASN HIS GLY GLU GLU GLN VAL ARG LEU TRP ARG ARG SEQRES 10 C 267 SER TYR ASN VAL THR PRO PRO PRO ILE GLU GLU SER HIS SEQRES 11 C 267 PRO TYR TYR GLN GLU ILE TYR ASN ASP ARG ARG TYR LYS SEQRES 12 C 267 VAL CYS ASP VAL PRO LEU ASP GLN LEU PRO ARG SER GLU SEQRES 13 C 267 SER LEU LYS ASP VAL LEU GLU ARG LEU LEU PRO TYR TRP SEQRES 14 C 267 ASN GLU ARG ILE ALA PRO GLU VAL LEU ARG GLY LYS THR SEQRES 15 C 267 ILE LEU ILE SER ALA HIS GLY ASN SER SER ARG ALA LEU SEQRES 16 C 267 LEU LYS HIS LEU GLU GLY ILE SER ASP GLU ASP ILE ILE SEQRES 17 C 267 ASN ILE THR LEU PRO THR GLY VAL PRO ILE LEU LEU GLU SEQRES 18 C 267 LEU ASP GLU ASN LEU ARG ALA VAL GLY PRO HIS GLN PHE SEQRES 19 C 267 LEU GLY ASP GLN GLU ALA ILE GLN ALA ALA ILE LYS LYS SEQRES 20 C 267 VAL GLU ASP GLN GLY LYS VAL LYS GLN ALA LYS LYS LEU SEQRES 21 C 267 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 267 MET SER LYS TYR LYS LEU ILE MET LEU ARG HIS GLY GLU SEQRES 2 D 267 GLY ALA TRP ASN LYS GLU ASN ARG PHE CYS SER TRP VAL SEQRES 3 D 267 ASP GLN LYS LEU ASN SER GLU GLY MET GLU GLU ALA ARG SEQRES 4 D 267 ASN CYS GLY LYS GLN LEU LYS ALA LEU ASN PHE GLU PHE SEQRES 5 D 267 ASP LEU VAL PHE THR SER VAL LEU ASN ARG SER ILE HIS SEQRES 6 D 267 THR ALA TRP LEU ILE LEU GLU GLU LEU GLY GLN GLU TRP SEQRES 7 D 267 VAL PRO VAL GLU SER SER TRP ARG LEU ASN GLU HIS HIS SEQRES 8 D 267 TYR GLY ALA LEU ILE GLY LEU ASN ARG GLU GLN MET ALA SEQRES 9 D 267 LEU ASN HIS GLY GLU GLU GLN VAL ARG LEU TRP ARG ARG SEQRES 10 D 267 SER TYR ASN VAL THR PRO PRO PRO ILE GLU GLU SER HIS SEQRES 11 D 267 PRO TYR TYR GLN GLU ILE TYR ASN ASP ARG ARG TYR LYS SEQRES 12 D 267 VAL CYS ASP VAL PRO LEU ASP GLN LEU PRO ARG SER GLU SEQRES 13 D 267 SER LEU LYS ASP VAL LEU GLU ARG LEU LEU PRO TYR TRP SEQRES 14 D 267 ASN GLU ARG ILE ALA PRO GLU VAL LEU ARG GLY LYS THR SEQRES 15 D 267 ILE LEU ILE SER ALA HIS GLY ASN SER SER ARG ALA LEU SEQRES 16 D 267 LEU LYS HIS LEU GLU GLY ILE SER ASP GLU ASP ILE ILE SEQRES 17 D 267 ASN ILE THR LEU PRO THR GLY VAL PRO ILE LEU LEU GLU SEQRES 18 D 267 LEU ASP GLU ASN LEU ARG ALA VAL GLY PRO HIS GLN PHE SEQRES 19 D 267 LEU GLY ASP GLN GLU ALA ILE GLN ALA ALA ILE LYS LYS SEQRES 20 D 267 VAL GLU ASP GLN GLY LYS VAL LYS GLN ALA LYS LYS LEU SEQRES 21 D 267 GLU HIS HIS HIS HIS HIS HIS HET CIT A 300 13 HET CIT B 300 26 HET CIT C 301 26 HET EDO C 302 4 HET EDO C 303 4 HET CIT D 300 26 HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 CIT 4(C6 H8 O7) FORMUL 8 EDO 2(C2 H6 O2) FORMUL 11 HOH *362(H2 O) HELIX 1 AA1 GLY A 14 GLU A 19 1 6 HELIX 2 AA2 ASN A 31 LEU A 48 1 18 HELIX 3 AA3 LEU A 60 GLY A 75 1 16 HELIX 4 AA4 TRP A 85 ASN A 88 5 4 HELIX 5 AA5 TYR A 92 ILE A 96 5 5 HELIX 6 AA6 ASN A 99 GLY A 108 1 10 HELIX 7 AA7 GLY A 108 SER A 118 1 11 HELIX 8 AA8 TYR A 132 ASN A 138 1 7 HELIX 9 AA9 ASP A 139 LYS A 143 5 5 HELIX 10 AB1 PRO A 148 LEU A 152 5 5 HELIX 11 AB2 SER A 157 ARG A 172 1 16 HELIX 12 AB3 ARG A 172 ARG A 179 1 8 HELIX 13 AB4 HIS A 188 GLU A 200 1 13 HELIX 14 AB5 ASP A 206 ILE A 210 5 5 HELIX 15 AB6 ASP A 237 VAL A 248 1 12 HELIX 16 AB7 GLY B 14 GLU B 19 1 6 HELIX 17 AB8 ASN B 31 LEU B 48 1 18 HELIX 18 AB9 LEU B 60 GLY B 75 1 16 HELIX 19 AC1 TRP B 85 ASN B 88 5 4 HELIX 20 AC2 TYR B 92 ILE B 96 5 5 HELIX 21 AC3 ASN B 99 GLY B 108 1 10 HELIX 22 AC4 GLY B 108 SER B 118 1 11 HELIX 23 AC5 TYR B 132 ASN B 138 1 7 HELIX 24 AC6 ASP B 139 LYS B 143 5 5 HELIX 25 AC7 PRO B 148 LEU B 152 5 5 HELIX 26 AC8 SER B 157 ARG B 172 1 16 HELIX 27 AC9 ARG B 172 ARG B 179 1 8 HELIX 28 AD1 HIS B 188 GLY B 201 1 14 HELIX 29 AD2 ASP B 206 ILE B 210 5 5 HELIX 30 AD3 ASP B 237 GLU B 249 1 13 HELIX 31 AD4 GLY C 14 GLU C 19 1 6 HELIX 32 AD5 ASN C 31 LEU C 48 1 18 HELIX 33 AD6 LEU C 60 GLY C 75 1 16 HELIX 34 AD7 TRP C 85 ASN C 88 5 4 HELIX 35 AD8 TYR C 92 ILE C 96 5 5 HELIX 36 AD9 ASN C 99 GLY C 108 1 10 HELIX 37 AE1 GLY C 108 SER C 118 1 11 HELIX 38 AE2 TYR C 132 ASN C 138 1 7 HELIX 39 AE3 ASP C 139 VAL C 144 5 6 HELIX 40 AE4 PRO C 148 LEU C 152 5 5 HELIX 41 AE5 SER C 157 ARG C 172 1 16 HELIX 42 AE6 ARG C 172 ARG C 179 1 8 HELIX 43 AE7 HIS C 188 GLY C 201 1 14 HELIX 44 AE8 GLU C 205 ILE C 210 5 6 HELIX 45 AE9 ASP C 237 GLU C 249 1 13 HELIX 46 AF1 ASN D 31 LEU D 48 1 18 HELIX 47 AF2 LEU D 60 GLY D 75 1 16 HELIX 48 AF3 TRP D 85 ASN D 88 5 4 HELIX 49 AF4 TYR D 92 ILE D 96 5 5 HELIX 50 AF5 ASN D 99 GLY D 108 1 10 HELIX 51 AF6 GLY D 108 SER D 118 1 11 HELIX 52 AF7 TYR D 132 ASN D 138 1 7 HELIX 53 AF8 ASP D 139 CYS D 145 5 7 HELIX 54 AF9 PRO D 148 LEU D 152 5 5 HELIX 55 AG1 SER D 157 ARG D 172 1 16 HELIX 56 AG2 ARG D 172 ARG D 179 1 8 HELIX 57 AG3 HIS D 188 GLY D 201 1 14 HELIX 58 AG4 GLU D 205 ILE D 210 5 6 HELIX 59 AG5 ASP D 237 VAL D 248 1 12 SHEET 1 AA1 6 VAL A 81 SER A 83 0 SHEET 2 AA1 6 LEU A 54 THR A 57 1 N VAL A 55 O GLU A 82 SHEET 3 AA1 6 ILE A 183 ALA A 187 1 O LEU A 184 N PHE A 56 SHEET 4 AA1 6 TYR A 4 ARG A 10 1 N LEU A 9 O ALA A 187 SHEET 5 AA1 6 ILE A 218 LEU A 222 -1 O ILE A 218 N MET A 8 SHEET 6 AA1 6 GLN A 233 PHE A 234 -1 O GLN A 233 N LEU A 219 SHEET 1 AA2 6 VAL B 81 SER B 83 0 SHEET 2 AA2 6 LEU B 54 THR B 57 1 N VAL B 55 O GLU B 82 SHEET 3 AA2 6 ILE B 183 ALA B 187 1 O LEU B 184 N PHE B 56 SHEET 4 AA2 6 TYR B 4 ARG B 10 1 N LEU B 9 O ALA B 187 SHEET 5 AA2 6 ILE B 218 LEU B 222 -1 O ILE B 218 N MET B 8 SHEET 6 AA2 6 GLN B 233 PHE B 234 -1 O GLN B 233 N LEU B 219 SHEET 1 AA3 6 VAL C 81 SER C 83 0 SHEET 2 AA3 6 LEU C 54 THR C 57 1 N VAL C 55 O GLU C 82 SHEET 3 AA3 6 ILE C 183 ALA C 187 1 O SER C 186 N PHE C 56 SHEET 4 AA3 6 TYR C 4 ARG C 10 1 N ILE C 7 O ILE C 185 SHEET 5 AA3 6 ILE C 218 LEU C 222 -1 O ILE C 218 N MET C 8 SHEET 6 AA3 6 GLN C 233 PHE C 234 -1 O GLN C 233 N LEU C 219 SHEET 1 AA4 6 VAL D 81 SER D 83 0 SHEET 2 AA4 6 LEU D 54 THR D 57 1 N VAL D 55 O GLU D 82 SHEET 3 AA4 6 ILE D 183 ALA D 187 1 O LEU D 184 N PHE D 56 SHEET 4 AA4 6 TYR D 4 ARG D 10 1 N LEU D 9 O ALA D 187 SHEET 5 AA4 6 ILE D 218 LEU D 222 -1 O ILE D 218 N MET D 8 SHEET 6 AA4 6 GLN D 233 PHE D 234 -1 O GLN D 233 N LEU D 219 CRYST1 38.537 47.654 145.110 87.87 83.15 84.70 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025949 -0.002409 -0.003055 0.00000 SCALE2 0.000000 0.021075 -0.000556 0.00000 SCALE3 0.000000 0.000000 0.006943 0.00000 CONECT 8443 8444 8445 8446 CONECT 8444 8443 CONECT 8445 8443 CONECT 8446 8443 8447 CONECT 8447 8446 8448 8449 8453 CONECT 8448 8447 CONECT 8449 8447 8450 CONECT 8450 8449 8451 8452 CONECT 8451 8450 CONECT 8452 8450 CONECT 8453 8447 8454 8455 CONECT 8454 8453 CONECT 8455 8453 CONECT 8456 8458 8460 8462 CONECT 8457 8459 8461 8463 CONECT 8458 8456 CONECT 8459 8457 CONECT 8460 8456 CONECT 8461 8457 CONECT 8462 8456 8464 CONECT 8463 8457 8465 CONECT 8464 8462 8466 8468 8476 CONECT 8465 8463 8467 8469 8477 CONECT 8466 8464 CONECT 8467 8465 CONECT 8468 8464 8470 CONECT 8469 8465 8471 CONECT 8470 8468 8472 8474 CONECT 8471 8469 8473 8475 CONECT 8472 8470 CONECT 8473 8471 CONECT 8474 8470 CONECT 8475 8471 CONECT 8476 8464 8478 8480 CONECT 8477 8465 8479 8481 CONECT 8478 8476 CONECT 8479 8477 CONECT 8480 8476 CONECT 8481 8477 CONECT 8482 8484 8486 8488 CONECT 8483 8485 8487 8489 CONECT 8484 8482 CONECT 8485 8483 CONECT 8486 8482 CONECT 8487 8483 CONECT 8488 8482 8490 CONECT 8489 8483 8491 CONECT 8490 8488 8492 8494 8502 CONECT 8491 8489 8493 8495 8503 CONECT 8492 8490 CONECT 8493 8491 CONECT 8494 8490 8496 CONECT 8495 8491 8497 CONECT 8496 8494 8498 8500 CONECT 8497 8495 8499 8501 CONECT 8498 8496 CONECT 8499 8497 CONECT 8500 8496 CONECT 8501 8497 CONECT 8502 8490 8504 8506 CONECT 8503 8491 8505 8507 CONECT 8504 8502 CONECT 8505 8503 CONECT 8506 8502 CONECT 8507 8503 CONECT 8508 8509 8510 CONECT 8509 8508 CONECT 8510 8508 8511 CONECT 8511 8510 CONECT 8512 8513 8514 CONECT 8513 8512 CONECT 8514 8512 8515 CONECT 8515 8514 CONECT 8516 8518 8520 8522 CONECT 8517 8519 8521 8523 CONECT 8518 8516 CONECT 8519 8517 CONECT 8520 8516 CONECT 8521 8517 CONECT 8522 8516 8524 CONECT 8523 8517 8525 CONECT 8524 8522 8526 8528 8536 CONECT 8525 8523 8527 8529 8537 CONECT 8526 8524 CONECT 8527 8525 CONECT 8528 8524 8530 CONECT 8529 8525 8531 CONECT 8530 8528 8532 8534 CONECT 8531 8529 8533 8535 CONECT 8532 8530 CONECT 8533 8531 CONECT 8534 8530 CONECT 8535 8531 CONECT 8536 8524 8538 8540 CONECT 8537 8525 8539 8541 CONECT 8538 8536 CONECT 8539 8537 CONECT 8540 8536 CONECT 8541 8537 MASTER 389 0 6 59 24 0 0 6 8563 4 99 84 END