HEADER OXIDOREDUCTASE 15-OCT-25 9SZQ TITLE CRYSTAL STRUCTURE OF THE E336K MUTANT OF HUMAN APOPTOSIS INDUCING TITLE 2 FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROGRAMMED CELL DEATH PROTEIN 8; COMPND 5 EC: 1.6.99.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AIFM1, AIF, PDCD8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NADH-OXIDASE, APOPTOSIS, NUCLEAR CHROMATINOLYSIS, DNA BINDING, KEYWDS 2 FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MARTINEZ-JULVEZ,P.FERREIRA,M.FERRER REVDAT 1 22-APR-26 9SZQ 0 JRNL AUTH M.FERRER,M.PEDRON,O.SORIANO,M.MARTINEZ-JULVEZ, JRNL AUTH 2 M.MARIN-BAQUERO,R.GARCIA-VILLANUEVA,A.VELAZQUEZ-CAMPOY, JRNL AUTH 3 J.MARCO-BRUALLA,C.RIPOLLES-YUBA,P.FERNANDEZ-SILVA,M.MEDINA, JRNL AUTH 4 M.D.MIRAMAR,M.BESTUE,R.MORENO-LOSHUERTOS,P.FERREIRA JRNL TITL CLINICAL AND MOLECULAR CHARACTERIZATION OF A NOVEL JRNL TITL 2 PATHOGENIC AIFM1 E336K MUTATION CONNECTING MITOCHONDRIAL JRNL TITL 3 DYSFUNCTION AND NEURODEGENERATION. JRNL REF CELL COMMUN SIGNAL 2026 JRNL REFN ISSN 1478-811X JRNL PMID 41957773 JRNL DOI 10.1186/S12964-026-02862-8 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 44616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2370 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3279 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3627 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.669 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3786 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3661 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5128 ; 1.796 ; 1.832 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8437 ; 0.597 ; 1.770 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 6.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ; 7.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 656 ;13.469 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4476 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 851 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1891 ; 2.410 ; 2.591 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1891 ; 2.400 ; 2.591 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2363 ; 3.313 ; 4.640 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2364 ; 3.316 ; 4.641 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1895 ; 3.670 ; 3.033 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1896 ; 3.670 ; 3.034 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2764 ; 5.579 ; 5.356 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4201 ; 6.883 ;28.160 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4160 ; 6.823 ;27.510 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9SZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1292149348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 89.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, TRISHCL PH 8.5, LITHIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.54950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 SER A 82 REMARK 465 HIS A 83 REMARK 465 HIS A 84 REMARK 465 HIS A 85 REMARK 465 HIS A 86 REMARK 465 HIS A 87 REMARK 465 HIS A 88 REMARK 465 GLY A 89 REMARK 465 SER A 90 REMARK 465 SER A 91 REMARK 465 LEU A 92 REMARK 465 VAL A 93 REMARK 465 PRO A 94 REMARK 465 ARG A 95 REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 465 GLY A 98 REMARK 465 SER A 99 REMARK 465 SER A 100 REMARK 465 LYS A 101 REMARK 465 LEU A 102 REMARK 465 GLY A 103 REMARK 465 LEU A 104 REMARK 465 THR A 105 REMARK 465 PRO A 106 REMARK 465 GLU A 107 REMARK 465 GLN A 108 REMARK 465 LYS A 109 REMARK 465 GLN A 110 REMARK 465 LYS A 111 REMARK 465 LYS A 112 REMARK 465 ALA A 113 REMARK 465 ALA A 114 REMARK 465 LEU A 115 REMARK 465 SER A 116 REMARK 465 ALA A 117 REMARK 465 SER A 118 REMARK 465 GLU A 119 REMARK 465 GLY A 120 REMARK 465 GLU A 121 REMARK 465 GLU A 122 REMARK 465 VAL A 123 REMARK 465 PRO A 124 REMARK 465 GLN A 125 REMARK 465 ASP A 126 REMARK 465 SER A 546 REMARK 465 THR A 547 REMARK 465 PRO A 548 REMARK 465 ALA A 549 REMARK 465 VAL A 550 REMARK 465 PRO A 551 REMARK 465 GLN A 552 REMARK 465 ALA A 553 REMARK 465 PRO A 554 REMARK 465 VAL A 555 REMARK 465 GLN A 556 REMARK 465 GLY A 557 REMARK 465 GLU A 558 REMARK 465 HIS A 611 REMARK 465 GLU A 612 REMARK 465 ASP A 613 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 215 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 164 O HOH A 801 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 199 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 324 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 449 CB - CA - C ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 177 -107.13 -134.40 REMARK 500 PHE A 181 61.69 -103.09 REMARK 500 HIS A 219 -2.39 -141.53 REMARK 500 ARG A 285 -35.83 -152.02 REMARK 500 ILE A 343 -50.56 -120.80 REMARK 500 SER A 376 55.88 36.29 REMARK 500 LEU A 486 76.83 -104.84 REMARK 500 THR A 534 160.85 70.14 REMARK 500 LYS A 571 1.49 80.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 172 0.12 SIDE CHAIN REMARK 500 ARG A 192 0.09 SIDE CHAIN REMARK 500 ARG A 358 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9SZQ A 102 613 UNP O95831 AIFM1_HUMAN 102 613 SEQADV 9SZQ MET A 79 UNP O95831 INITIATING METHIONINE SEQADV 9SZQ GLY A 80 UNP O95831 EXPRESSION TAG SEQADV 9SZQ SER A 81 UNP O95831 EXPRESSION TAG SEQADV 9SZQ SER A 82 UNP O95831 EXPRESSION TAG SEQADV 9SZQ HIS A 83 UNP O95831 EXPRESSION TAG SEQADV 9SZQ HIS A 84 UNP O95831 EXPRESSION TAG SEQADV 9SZQ HIS A 85 UNP O95831 EXPRESSION TAG SEQADV 9SZQ HIS A 86 UNP O95831 EXPRESSION TAG SEQADV 9SZQ HIS A 87 UNP O95831 EXPRESSION TAG SEQADV 9SZQ HIS A 88 UNP O95831 EXPRESSION TAG SEQADV 9SZQ GLY A 89 UNP O95831 EXPRESSION TAG SEQADV 9SZQ SER A 90 UNP O95831 EXPRESSION TAG SEQADV 9SZQ SER A 91 UNP O95831 EXPRESSION TAG SEQADV 9SZQ LEU A 92 UNP O95831 EXPRESSION TAG SEQADV 9SZQ VAL A 93 UNP O95831 EXPRESSION TAG SEQADV 9SZQ PRO A 94 UNP O95831 EXPRESSION TAG SEQADV 9SZQ ARG A 95 UNP O95831 EXPRESSION TAG SEQADV 9SZQ GLY A 96 UNP O95831 EXPRESSION TAG SEQADV 9SZQ SER A 97 UNP O95831 EXPRESSION TAG SEQADV 9SZQ GLY A 98 UNP O95831 EXPRESSION TAG SEQADV 9SZQ SER A 99 UNP O95831 EXPRESSION TAG SEQADV 9SZQ SER A 100 UNP O95831 EXPRESSION TAG SEQADV 9SZQ LYS A 101 UNP O95831 EXPRESSION TAG SEQADV 9SZQ LYS A 336 UNP O95831 GLU 336 ENGINEERED MUTATION SEQRES 1 A 535 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 A 535 LEU VAL PRO ARG GLY SER GLY SER SER LYS LEU GLY LEU SEQRES 3 A 535 THR PRO GLU GLN LYS GLN LYS LYS ALA ALA LEU SER ALA SEQRES 4 A 535 SER GLU GLY GLU GLU VAL PRO GLN ASP LYS ALA PRO SER SEQRES 5 A 535 HIS VAL PRO PHE LEU LEU ILE GLY GLY GLY THR ALA ALA SEQRES 6 A 535 PHE ALA ALA ALA ARG SER ILE ARG ALA ARG ASP PRO GLY SEQRES 7 A 535 ALA ARG VAL LEU ILE VAL SER GLU ASP PRO GLU LEU PRO SEQRES 8 A 535 TYR MET ARG PRO PRO LEU SER LYS GLU LEU TRP PHE SER SEQRES 9 A 535 ASP ASP PRO ASN VAL THR LYS THR LEU ARG PHE LYS GLN SEQRES 10 A 535 TRP ASN GLY LYS GLU ARG SER ILE TYR PHE GLN PRO PRO SEQRES 11 A 535 SER PHE TYR VAL SER ALA GLN ASP LEU PRO HIS ILE GLU SEQRES 12 A 535 ASN GLY GLY VAL ALA VAL LEU THR GLY LYS LYS VAL VAL SEQRES 13 A 535 GLN LEU ASP VAL ARG ASP ASN MET VAL LYS LEU ASN ASP SEQRES 14 A 535 GLY SER GLN ILE THR TYR GLU LYS CYS LEU ILE ALA THR SEQRES 15 A 535 GLY GLY THR PRO ARG SER LEU SER ALA ILE ASP ARG ALA SEQRES 16 A 535 GLY ALA GLU VAL LYS SER ARG THR THR LEU PHE ARG LYS SEQRES 17 A 535 ILE GLY ASP PHE ARG SER LEU GLU LYS ILE SER ARG GLU SEQRES 18 A 535 VAL LYS SER ILE THR ILE ILE GLY GLY GLY PHE LEU GLY SEQRES 19 A 535 SER GLU LEU ALA CYS ALA LEU GLY ARG LYS ALA ARG ALA SEQRES 20 A 535 LEU GLY THR GLU VAL ILE GLN LEU PHE PRO LYS LYS GLY SEQRES 21 A 535 ASN MET GLY LYS ILE LEU PRO GLU TYR LEU SER ASN TRP SEQRES 22 A 535 THR MET GLU LYS VAL ARG ARG GLU GLY VAL LYS VAL MET SEQRES 23 A 535 PRO ASN ALA ILE VAL GLN SER VAL GLY VAL SER SER GLY SEQRES 24 A 535 LYS LEU LEU ILE LYS LEU LYS ASP GLY ARG LYS VAL GLU SEQRES 25 A 535 THR ASP HIS ILE VAL ALA ALA VAL GLY LEU GLU PRO ASN SEQRES 26 A 535 VAL GLU LEU ALA LYS THR GLY GLY LEU GLU ILE ASP SER SEQRES 27 A 535 ASP PHE GLY GLY PHE ARG VAL ASN ALA GLU LEU GLN ALA SEQRES 28 A 535 ARG SER ASN ILE TRP VAL ALA GLY ASP ALA ALA CYS PHE SEQRES 29 A 535 TYR ASP ILE LYS LEU GLY ARG ARG ARG VAL GLU HIS HIS SEQRES 30 A 535 ASP HIS ALA VAL VAL SER GLY ARG LEU ALA GLY GLU ASN SEQRES 31 A 535 MET THR GLY ALA ALA LYS PRO TYR TRP HIS GLN SER MET SEQRES 32 A 535 PHE TRP SER ASP LEU GLY PRO ASP VAL GLY TYR GLU ALA SEQRES 33 A 535 ILE GLY LEU VAL ASP SER SER LEU PRO THR VAL GLY VAL SEQRES 34 A 535 PHE ALA LYS ALA THR ALA GLN ASP ASN PRO LYS SER ALA SEQRES 35 A 535 THR GLU GLN SER GLY THR GLY ILE ARG SER GLU SER GLU SEQRES 36 A 535 THR GLU SER GLU ALA SER GLU ILE THR ILE PRO PRO SER SEQRES 37 A 535 THR PRO ALA VAL PRO GLN ALA PRO VAL GLN GLY GLU ASP SEQRES 38 A 535 TYR GLY LYS GLY VAL ILE PHE TYR LEU ARG ASP LYS VAL SEQRES 39 A 535 VAL VAL GLY ILE VAL LEU TRP ASN ILE PHE ASN ARG MET SEQRES 40 A 535 PRO ILE ALA ARG LYS ILE ILE LYS ASP GLY GLU GLN HIS SEQRES 41 A 535 GLU ASP LEU ASN GLU VAL ALA LYS LEU PHE ASN ILE HIS SEQRES 42 A 535 GLU ASP HET FAD A 701 53 HET GOL A 702 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *239(H2 O) HELIX 1 AA1 GLY A 140 ASP A 154 1 15 HELIX 2 AA2 ARG A 172 PHE A 181 5 10 HELIX 3 AA3 ASN A 186 LEU A 191 1 6 HELIX 4 AA4 PRO A 207 TYR A 211 5 5 HELIX 5 AA5 LEU A 267 ARG A 272 1 6 HELIX 6 AA6 GLY A 274 ARG A 280 1 7 HELIX 7 AA7 LYS A 286 VAL A 300 1 15 HELIX 8 AA8 GLY A 309 GLY A 327 1 19 HELIX 9 AA9 PRO A 345 GLU A 359 1 15 HELIX 10 AB1 LEU A 406 GLY A 411 1 6 HELIX 11 AB2 HIS A 454 THR A 470 1 17 HELIX 12 AB3 ASN A 516 GLY A 525 1 10 HELIX 13 AB4 ILE A 528 THR A 534 1 7 HELIX 14 AB5 ARG A 584 GLY A 595 1 12 HELIX 15 AB6 ASP A 600 LYS A 606 1 7 HELIX 16 AB7 LEU A 607 ASN A 609 5 3 SHEET 1 AA1 6 GLY A 224 THR A 229 0 SHEET 2 AA1 6 ARG A 158 SER A 163 1 N ILE A 161 O ALA A 226 SHEET 3 AA1 6 HIS A 131 ILE A 137 1 N LEU A 136 O LEU A 160 SHEET 4 AA1 6 GLN A 250 ILE A 258 1 O LEU A 257 N ILE A 137 SHEET 5 AA1 6 MET A 242 LEU A 245 -1 N VAL A 243 O ILE A 251 SHEET 6 AA1 6 VAL A 233 ASP A 237 -1 N ASP A 237 O MET A 242 SHEET 1 AA2 6 GLY A 224 THR A 229 0 SHEET 2 AA2 6 ARG A 158 SER A 163 1 N ILE A 161 O ALA A 226 SHEET 3 AA2 6 HIS A 131 ILE A 137 1 N LEU A 136 O LEU A 160 SHEET 4 AA2 6 GLN A 250 ILE A 258 1 O LEU A 257 N ILE A 137 SHEET 5 AA2 6 ILE A 433 VAL A 435 1 O TRP A 434 N ILE A 258 SHEET 6 AA2 6 GLN A 428 ARG A 430 -1 N ALA A 429 O ILE A 433 SHEET 1 AA3 2 ARG A 192 LYS A 194 0 SHEET 2 AA3 2 GLU A 200 SER A 202 -1 O ARG A 201 N PHE A 193 SHEET 1 AA4 2 GLY A 262 PRO A 264 0 SHEET 2 AA4 2 LEU A 400 PRO A 402 -1 O GLU A 401 N THR A 263 SHEET 1 AA5 5 THR A 281 LEU A 283 0 SHEET 2 AA5 5 HIS A 393 ALA A 396 1 O ILE A 394 N THR A 282 SHEET 3 AA5 5 SER A 302 ILE A 306 1 N ILE A 306 O VAL A 395 SHEET 4 AA5 5 GLU A 329 LEU A 333 1 O ILE A 331 N ILE A 305 SHEET 5 AA5 5 LYS A 362 MET A 364 1 O MET A 364 N GLN A 332 SHEET 1 AA6 3 VAL A 369 SER A 375 0 SHEET 2 AA6 3 LYS A 378 LEU A 383 -1 O LYS A 378 N SER A 375 SHEET 3 AA6 3 LYS A 388 THR A 391 -1 O VAL A 389 N ILE A 381 SHEET 1 AA7 3 PHE A 421 ARG A 422 0 SHEET 2 AA7 3 ALA A 440 ASP A 444 1 O CYS A 441 N PHE A 421 SHEET 3 AA7 3 GLY A 448 ARG A 450 -1 O GLY A 448 N ASP A 444 SHEET 1 AA8 5 MET A 481 ASP A 485 0 SHEET 2 AA8 5 GLY A 491 GLY A 496 -1 O TYR A 492 N SER A 484 SHEET 3 AA8 5 VAL A 572 TRP A 579 -1 O LEU A 578 N GLU A 493 SHEET 4 AA8 5 LYS A 562 ARG A 569 -1 N GLY A 563 O TRP A 579 SHEET 5 AA8 5 THR A 504 ALA A 509 -1 N VAL A 505 O PHE A 566 CRYST1 50.283 89.099 60.110 90.00 94.69 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019887 0.000000 0.001633 0.00000 SCALE2 0.000000 0.011223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016692 0.00000 CONECT 3651 3652 3653 3654 3703 CONECT 3652 3651 CONECT 3653 3651 CONECT 3654 3651 3655 CONECT 3655 3654 3656 CONECT 3656 3655 3657 3658 CONECT 3657 3656 3662 CONECT 3658 3656 3659 3660 CONECT 3659 3658 CONECT 3660 3658 3661 3662 CONECT 3661 3660 CONECT 3662 3657 3660 3663 CONECT 3663 3662 3664 3672 CONECT 3664 3663 3665 CONECT 3665 3664 3666 CONECT 3666 3665 3667 3672 CONECT 3667 3666 3668 3669 CONECT 3668 3667 CONECT 3669 3667 3670 CONECT 3670 3669 3671 CONECT 3671 3670 3672 CONECT 3672 3663 3666 3671 CONECT 3673 3674 3690 CONECT 3674 3673 3675 3676 CONECT 3675 3674 CONECT 3676 3674 3677 CONECT 3677 3676 3678 3679 CONECT 3678 3677 CONECT 3679 3677 3680 3690 CONECT 3680 3679 3681 CONECT 3681 3680 3682 3688 CONECT 3682 3681 3683 CONECT 3683 3682 3684 3685 CONECT 3684 3683 CONECT 3685 3683 3686 3687 CONECT 3686 3685 CONECT 3687 3685 3688 CONECT 3688 3681 3687 3689 CONECT 3689 3688 3690 3691 CONECT 3690 3673 3679 3689 CONECT 3691 3689 3692 CONECT 3692 3691 3693 3694 CONECT 3693 3692 CONECT 3694 3692 3695 3696 CONECT 3695 3694 CONECT 3696 3694 3697 3698 CONECT 3697 3696 CONECT 3698 3696 3699 CONECT 3699 3698 3700 CONECT 3700 3699 3701 3702 3703 CONECT 3701 3700 CONECT 3702 3700 CONECT 3703 3651 3700 CONECT 3704 3705 3706 CONECT 3705 3704 CONECT 3706 3704 3707 3708 CONECT 3707 3706 CONECT 3708 3706 3709 CONECT 3709 3708 MASTER 385 0 2 16 32 0 0 6 3925 1 59 42 END