HEADER UNKNOWN FUNCTION 16-OCT-25 9T02 TITLE NMR STUDY OF THE LASSO PEPTIDE SYANODIN I (1-16) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYANODIN I (1-16); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: LASSO PEPTIDE: ISOPEPTIDIC BOND BETWEEN N-TERMINUS AND COMPND 6 SIDE CHAIN OF D9 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM YANOIKUYAE; SOURCE 3 ORGANISM_TAXID: 13690; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET41A KEYWDS LASSO PEPTIDE, SYANODIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR M.SANTOS-FERNANDEZ,K.JEANNE DIT FOUQUE,U.KARKI,A.BLOND,R.IDIR, AUTHOR 2 N.ASGHARIHOSSEINPOUR,S.ZIRAH,P.CHAPAGAIN,J.HEGEMANN,F.FERNANDEZ-LIMA REVDAT 1 26-AUG-26 9T02 0 JRNL AUTH M.SANTOS-FERNANDEZ,K.JEANNE DIT FOUQUE,U.KARKI,A.BLOND, JRNL AUTH 2 R.IDIR,N.ASGHARIHOSSEINPOUR,S.ZIRAH,P.CHAPAGAIN,J.HEGEMANN, JRNL AUTH 3 F.FERNANDEZ-LIMA JRNL TITL INTRAMOLECULAR MOTIFS DRIVE SYANODIN I LASSO PEPTIDE JRNL TITL 2 STRUCTURES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, CHARMM REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), KARPLUS (CHARMM) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9T02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1292151469. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM NA- SYANODIN, METHANOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D 1H-1H TOCSY; 2D 1H REMARK 210 -1H COSY; 2D DQF-COSY; 2D 1H-13C REMARK 210 HSQC; 2D 1H-13C HMBC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, AURELIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-15 REMARK 470 RES CSSEQI ATOMS REMARK 470 ASP A 8 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY A 1 CG ASP A 8 1.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 11 113.34 -172.58 REMARK 500 2 ALA A 11 114.87 -172.55 REMARK 500 3 ALA A 11 114.43 -171.32 REMARK 500 4 ALA A 11 116.08 -172.62 REMARK 500 5 ALA A 11 116.10 -171.93 REMARK 500 6 ALA A 11 115.28 -169.30 REMARK 500 7 ALA A 11 113.88 -169.06 REMARK 500 8 THR A 6 -14.97 -141.18 REMARK 500 8 ALA A 11 116.88 -171.77 REMARK 500 9 ALA A 11 113.14 -171.25 REMARK 500 10 ALA A 11 116.79 -171.76 REMARK 500 11 ALA A 11 114.13 -169.51 REMARK 500 12 SER A 3 11.10 -145.66 REMARK 500 12 ALA A 11 112.19 -168.91 REMARK 500 13 ALA A 11 114.74 -170.33 REMARK 500 14 ALA A 11 113.35 -170.72 REMARK 500 15 THR A 6 10.37 -152.20 REMARK 500 15 ALA A 11 117.70 -171.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 35024 RELATED DB: BMRB REMARK 900 NMR STUDY OF THE LASSO PEPTIDE SYANODIN I (1-16) DBREF 9T02 A 1 16 PDB 9T02 9T02 1 16 SEQRES 1 A 16 GLY ILE SER GLY GLY THR VAL ASP ALA PRO ALA GLY GLN SEQRES 2 A 16 GLY LEU ALA SHEET 1 AA1 2 ILE A 2 GLY A 4 0 SHEET 2 AA1 2 ALA A 11 GLY A 12 1 O ALA A 11 N GLY A 4 CISPEP 1 ALA A 9 PRO A 10 1 -4.27 CISPEP 2 ALA A 9 PRO A 10 2 -4.04 CISPEP 3 ALA A 9 PRO A 10 3 -3.45 CISPEP 4 ALA A 9 PRO A 10 4 -3.69 CISPEP 5 ALA A 9 PRO A 10 5 -3.68 CISPEP 6 ALA A 9 PRO A 10 6 -3.85 CISPEP 7 ALA A 9 PRO A 10 7 -3.77 CISPEP 8 ALA A 9 PRO A 10 8 -3.50 CISPEP 9 ALA A 9 PRO A 10 9 -4.45 CISPEP 10 ALA A 9 PRO A 10 10 -2.65 CISPEP 11 ALA A 9 PRO A 10 11 -4.32 CISPEP 12 ALA A 9 PRO A 10 12 -4.27 CISPEP 13 ALA A 9 PRO A 10 13 -3.43 CISPEP 14 ALA A 9 PRO A 10 14 -4.09 CISPEP 15 ALA A 9 PRO A 10 15 -4.58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MASTER 125 0 0 0 2 0 0 6 95 1 0 2 END