HEADER HYDROLASE 16-OCT-25 9T09 TITLE X-RAY STRUCTURE OF THE CATALYTIC DOMAIN OF CDC25B C473S AT 1.34 TITLE 2 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: M-PHASE INDUCER PHOSPHATASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DUAL SPECIFICITY PHOSPHATASE CDC25B; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDC25B, CDC25HU2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CDC25B, CATALYTIC DOMAIN, PHOSPHATASE, CELL DIVISION CYCLE 25B, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.TROISI,F.SICA REVDAT 1 11-MAR-26 9T09 0 JRNL AUTH R.TROISI,F.SICA JRNL TITL X-RAY STRUCTURE OF THE CATALYTIC DOMAIN OF CDC25B C473S AT JRNL TITL 2 1.34 ANGSTROM RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 54633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2855 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.34 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4244 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1486 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.713 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1716 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2342 ; 2.261 ; 1.841 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 217 ; 6.327 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ; 6.618 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;12.474 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 246 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1327 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 781 ; 1.282 ; 0.965 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 994 ; 1.915 ; 1.737 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 935 ; 3.097 ; 1.297 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2797 ; 5.856 ;15.130 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 371 A 970 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3288 -11.3048 10.3330 REMARK 3 T TENSOR REMARK 3 T11: 0.0232 T22: 0.0029 REMARK 3 T33: 0.0601 T12: 0.0067 REMARK 3 T13: 0.0081 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.8684 L22: 0.9014 REMARK 3 L33: 1.6330 L12: -0.0518 REMARK 3 L13: 0.3993 L23: 0.0724 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: -0.0099 S13: 0.0036 REMARK 3 S21: 0.0269 S22: 0.0159 S23: 0.0103 REMARK 3 S31: -0.0283 S32: -0.0443 S33: -0.0048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9T09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1292151502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57489 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 42.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, 0.5 M NACL, REMARK 280 0.1 M TRIS-HCL PH 7.5, AND 0.5 MM TCEP, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.06500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.06500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 354 REMARK 465 GLY A 355 REMARK 465 SER A 356 REMARK 465 SER A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 SER A 364 REMARK 465 SER A 365 REMARK 465 GLY A 366 REMARK 465 LEU A 367 REMARK 465 VAL A 368 REMARK 465 PRO A 369 REMARK 465 ARG A 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 406 CG - SD - CE ANGL. DEV. = -22.2 DEGREES REMARK 500 ARG A 427 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 479 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 479 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 482 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 482 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 482 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 485 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 485 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 492 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 529 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 529 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 544 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 544 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 439 -6.92 83.56 REMARK 500 SER A 473 -147.14 -134.79 REMARK 500 GLU A 478 -64.69 -123.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 967 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 968 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 969 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 970 DISTANCE = 6.60 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 606 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 373 NE2 REMARK 620 2 ASP A 392 OD1 99.3 REMARK 620 3 ASP A 392 OD2 152.7 53.7 REMARK 620 4 ASP A 419 OD1 38.8 61.0 114.7 REMARK 620 5 ASP A 419 OD2 41.3 59.3 112.8 4.0 REMARK 620 6 CYS A 461 SG 41.6 59.3 112.7 5.1 1.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9T0A RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE COMPLEX BETWEEN THE CATALYTIC DOMAIN OF REMARK 900 CDC25B C473S AND 3-O-METHYLFLUORESCEIN PHOSPHATE (3-OMFP) DBREF 9T09 A 377 550 UNP P30305 MPIP2_HUMAN 391 564 SEQADV 9T09 MET A 354 UNP P30305 INITIATING METHIONINE SEQADV 9T09 GLY A 355 UNP P30305 EXPRESSION TAG SEQADV 9T09 SER A 356 UNP P30305 EXPRESSION TAG SEQADV 9T09 SER A 357 UNP P30305 EXPRESSION TAG SEQADV 9T09 HIS A 358 UNP P30305 EXPRESSION TAG SEQADV 9T09 HIS A 359 UNP P30305 EXPRESSION TAG SEQADV 9T09 HIS A 360 UNP P30305 EXPRESSION TAG SEQADV 9T09 HIS A 361 UNP P30305 EXPRESSION TAG SEQADV 9T09 HIS A 362 UNP P30305 EXPRESSION TAG SEQADV 9T09 HIS A 363 UNP P30305 EXPRESSION TAG SEQADV 9T09 SER A 364 UNP P30305 EXPRESSION TAG SEQADV 9T09 SER A 365 UNP P30305 EXPRESSION TAG SEQADV 9T09 GLY A 366 UNP P30305 EXPRESSION TAG SEQADV 9T09 LEU A 367 UNP P30305 EXPRESSION TAG SEQADV 9T09 VAL A 368 UNP P30305 EXPRESSION TAG SEQADV 9T09 PRO A 369 UNP P30305 EXPRESSION TAG SEQADV 9T09 ARG A 370 UNP P30305 EXPRESSION TAG SEQADV 9T09 GLY A 371 UNP P30305 EXPRESSION TAG SEQADV 9T09 SER A 372 UNP P30305 EXPRESSION TAG SEQADV 9T09 HIS A 373 UNP P30305 EXPRESSION TAG SEQADV 9T09 MET A 374 UNP P30305 EXPRESSION TAG SEQADV 9T09 ALA A 375 UNP P30305 EXPRESSION TAG SEQADV 9T09 SER A 376 UNP P30305 EXPRESSION TAG SEQADV 9T09 SER A 473 UNP P30305 CYS 487 ENGINEERED MUTATION SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLU LEU ILE SEQRES 3 A 197 GLY ASP TYR SER LYS ALA PHE LEU LEU GLN THR VAL ASP SEQRES 4 A 197 GLY LYS HIS GLN ASP LEU LYS TYR ILE SER PRO GLU THR SEQRES 5 A 197 MET VAL ALA LEU LEU THR GLY LYS PHE SER ASN ILE VAL SEQRES 6 A 197 ASP LYS PHE VAL ILE VAL ASP CYS ARG TYR PRO TYR GLU SEQRES 7 A 197 TYR GLU GLY GLY HIS ILE LYS THR ALA VAL ASN LEU PRO SEQRES 8 A 197 LEU GLU ARG ASP ALA GLU SER PHE LEU LEU LYS SER PRO SEQRES 9 A 197 ILE ALA PRO CYS SER LEU ASP LYS ARG VAL ILE LEU ILE SEQRES 10 A 197 PHE HIS SER GLU PHE SER SER GLU ARG GLY PRO ARG MET SEQRES 11 A 197 CYS ARG PHE ILE ARG GLU ARG ASP ARG ALA VAL ASN ASP SEQRES 12 A 197 TYR PRO SER LEU TYR TYR PRO GLU MET TYR ILE LEU LYS SEQRES 13 A 197 GLY GLY TYR LYS GLU PHE PHE PRO GLN HIS PRO ASN PHE SEQRES 14 A 197 CYS GLU PRO GLN ASP TYR ARG PRO MET ASN HIS GLU ALA SEQRES 15 A 197 PHE LYS ASP GLU LEU LYS THR PHE ARG LEU LYS THR ARG SEQRES 16 A 197 SER TRP HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET CL A 605 1 HET ZN A 606 1 HET GOL A 607 6 HET GOL A 608 12 HET GOL A 609 6 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 CL CL 1- FORMUL 7 ZN ZN 2+ FORMUL 8 GOL 3(C3 H8 O3) FORMUL 11 HOH *270(H2 O) HELIX 1 AA1 SER A 402 THR A 411 1 10 HELIX 2 AA2 TYR A 428 GLY A 434 1 7 HELIX 3 AA3 LEU A 445 LYS A 455 1 11 HELIX 4 AA4 GLU A 478 ASN A 495 1 18 HELIX 5 AA5 GLY A 510 PHE A 516 1 7 HELIX 6 AA6 HIS A 519 ASN A 521 5 3 HELIX 7 AA7 HIS A 533 ALA A 535 5 3 HELIX 8 AA8 PHE A 536 LEU A 545 1 10 SHEET 1 AA1 2 SER A 372 HIS A 373 0 SHEET 2 AA1 2 THR A 390 VAL A 391 -1 O THR A 390 N HIS A 373 SHEET 1 AA2 5 TYR A 400 ILE A 401 0 SHEET 2 AA2 5 MET A 505 LEU A 508 1 O ILE A 507 N ILE A 401 SHEET 3 AA2 5 ARG A 466 HIS A 472 1 N PHE A 471 O TYR A 506 SHEET 4 AA2 5 VAL A 418 ASP A 425 1 N VAL A 424 O ILE A 470 SHEET 5 AA2 5 VAL A 441 ASN A 442 1 O VAL A 441 N ASP A 425 SHEET 1 AA3 2 HIS A 436 ILE A 437 0 SHEET 2 AA3 2 CYS A 523 GLU A 524 -1 O GLU A 524 N HIS A 436 LINK NE2 HIS A 373 ZN ZN A 606 1555 4445 2.31 LINK OD1AASP A 392 ZN ZN A 606 1555 4445 2.24 LINK OD2AASP A 392 ZN ZN A 606 1555 4445 2.55 LINK OD1 ASP A 419 ZN ZN A 606 1555 1555 2.28 LINK OD2 ASP A 419 ZN ZN A 606 1555 1555 2.53 LINK SG CYS A 461 ZN ZN A 606 1555 1555 2.49 CISPEP 1 TYR A 497 PRO A 498 0 1.64 CISPEP 2 GLU A 524 PRO A 525 0 -17.26 CRYST1 52.130 71.200 72.900 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019183 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013717 0.00000 CONECT 414 1641 CONECT 415 1641 CONECT 764 1641 CONECT 1620 1621 1622 1623 1624 CONECT 1621 1620 CONECT 1622 1620 CONECT 1623 1620 CONECT 1624 1620 CONECT 1625 1626 1627 1628 1629 CONECT 1626 1625 CONECT 1627 1625 CONECT 1628 1625 CONECT 1629 1625 CONECT 1630 1631 1632 1633 1634 CONECT 1631 1630 CONECT 1632 1630 CONECT 1633 1630 CONECT 1634 1630 CONECT 1635 1636 1637 1638 1639 CONECT 1636 1635 CONECT 1637 1635 CONECT 1638 1635 CONECT 1639 1635 CONECT 1641 414 415 764 CONECT 1642 1643 1644 CONECT 1643 1642 CONECT 1644 1642 1645 1646 CONECT 1645 1644 CONECT 1646 1644 1647 CONECT 1647 1646 CONECT 1648 1650 1652 CONECT 1649 1651 1653 CONECT 1650 1648 CONECT 1651 1649 CONECT 1652 1648 1654 1656 CONECT 1653 1649 1655 1657 CONECT 1654 1652 CONECT 1655 1653 CONECT 1656 1652 1658 CONECT 1657 1653 1659 CONECT 1658 1656 CONECT 1659 1657 CONECT 1660 1661 1662 CONECT 1661 1660 CONECT 1662 1660 1663 1664 CONECT 1663 1662 CONECT 1664 1662 1665 CONECT 1665 1664 MASTER 365 0 9 8 9 0 0 6 1796 1 48 16 END