HEADER NUCLEAR PROTEIN 07-NOV-25 9T6N TITLE CRYO-EM STRUCTURE OF THE HUMAN GANP-PCID2-DSS1 COMPLEX BOUND TO UAP56 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPLICEOSOME RNA HELICASE DDX39B; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: 56 KDA U2AF65-ASSOCIATED PROTEIN,ATP-DEPENDENT RNA HELICASE COMPND 5 P47,DEAD BOX PROTEIN UAP56,HLA-B-ASSOCIATED TRANSCRIPT 1 PROTEIN; COMPND 6 EC: 3.6.4.13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GERMINAL-CENTER ASSOCIATED NUCLEAR PROTEIN; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: GANP,80 KDA MCM3-ASSOCIATED PROTEIN,MCM3 ACETYLATING COMPND 12 PROTEIN,MCM3AP,MCM3 ACETYLTRANSFERASE; COMPND 13 EC: 2.3.1.48,2.3.1.-; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: PCI DOMAIN-CONTAINING PROTEIN 2; COMPND 17 CHAIN: D; COMPND 18 SYNONYM: CSN12-LIKE PROTEIN; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: 26S PROTEASOME COMPLEX SUBUNIT SEM1; COMPND 22 CHAIN: E; COMPND 23 SYNONYM: 26S PROTEASOME COMPLEX SUBUNIT DSS1,DELETED IN SPLIT COMPND 24 HAND/SPLIT FOOT PROTEIN 1,SPLIT HAND/FOOT DELETED PROTEIN 1,SPLIT COMPND 25 HAND/FOOT MALFORMATION TYPE 1 PROTEIN; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX39B, BAT1, UAP56; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MCM3AP, GANP, KIAA0572, MAP80; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: PCID2, HT004; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: SEM1, C7ORF76, DSS1, SHFDG1, SHFM1; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA METABOLISM, RNA EXPORT, NUCLEAR PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR D.K.ABBAS,F.BONNEAU,J.BASQUIN,E.CONTI,S.SCHUSSLER,M.E.WILKINSON REVDAT 1 27-MAY-26 9T6N 0 JRNL AUTH D.K.ABBAS,F.BONNEAU,M.E.WILKINSON,S.SCHUSSLER,J.BASQUIN, JRNL AUTH 2 E.CONTI JRNL TITL EVOLUTIONARILY CONSERVED SPLICEOSOME-EXOSOME PATHWAY IN JRNL TITL 2 NUCLEAR MRNA SURVEILLANCE. JRNL REF GENES DEV. 2026 JRNL REFN ISSN 0890-9369 JRNL PMID 42140674 JRNL DOI 10.1101/GAD.353594.125 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, TOPAZ, CRYOSPARC, COOT, UCSF REMARK 3 CHIMERAX, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 661235 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9T6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292151655. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF THE HUMAN REMARK 245 GANP-PID2-DSS1 COMPLEX BOUND TO REMARK 245 UAP56 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 28229 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6180.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 ASP B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 ASP B 5 REMARK 465 VAL B 6 REMARK 465 ASP B 7 REMARK 465 ASN B 8 REMARK 465 GLU B 9 REMARK 465 ASP B 16 REMARK 465 GLU B 17 REMARK 465 VAL B 18 REMARK 465 GLU B 19 REMARK 465 THR B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 GLY B 23 REMARK 465 GLY B 24 REMARK 465 ASP B 25 REMARK 465 GLY B 26 REMARK 465 ALA B 27 REMARK 465 GLU B 28 REMARK 465 ALA B 29 REMARK 465 PRO B 30 REMARK 465 ALA B 31 REMARK 465 LYS B 32 REMARK 465 LYS B 33 REMARK 465 ASP B 34 REMARK 465 VAL B 35 REMARK 465 LYS B 36 REMARK 465 GLY B 37 REMARK 465 SER B 38 REMARK 465 TYR B 39 REMARK 465 VAL B 40 REMARK 465 SER B 41 REMARK 465 ILE B 42 REMARK 465 GLY B 151 REMARK 465 LEU B 152 REMARK 465 SER B 153 REMARK 465 ASP B 253 REMARK 465 GLU B 254 REMARK 465 THR B 255 REMARK 465 LYS B 256 REMARK 465 LEU B 257 REMARK 465 THR B 258 REMARK 465 LEU B 259 REMARK 465 HIS B 260 REMARK 465 GLY B 261 REMARK 465 LEU B 262 REMARK 465 GLN B 263 REMARK 465 GLN B 264 REMARK 465 TYR B 265 REMARK 465 TYR B 266 REMARK 465 VAL B 267 REMARK 465 LYS B 268 REMARK 465 LEU B 269 REMARK 465 LYS B 270 REMARK 465 ASP B 271 REMARK 465 ASN B 272 REMARK 465 GLU B 273 REMARK 465 LYS B 274 REMARK 465 ASN B 275 REMARK 465 ARG B 276 REMARK 465 LYS B 277 REMARK 465 LEU B 278 REMARK 465 PHE B 279 REMARK 465 ASP B 280 REMARK 465 LEU B 281 REMARK 465 LEU B 282 REMARK 465 ASP B 283 REMARK 465 VAL B 284 REMARK 465 LEU B 285 REMARK 465 GLU B 286 REMARK 465 PHE B 287 REMARK 465 ASN B 288 REMARK 465 GLN B 289 REMARK 465 VAL B 290 REMARK 465 VAL B 291 REMARK 465 ILE B 292 REMARK 465 PHE B 293 REMARK 465 VAL B 294 REMARK 465 LYS B 295 REMARK 465 SER B 296 REMARK 465 VAL B 297 REMARK 465 GLN B 298 REMARK 465 ARG B 299 REMARK 465 CYS B 300 REMARK 465 ILE B 301 REMARK 465 ALA B 302 REMARK 465 LEU B 303 REMARK 465 ALA B 304 REMARK 465 GLN B 305 REMARK 465 LEU B 306 REMARK 465 LEU B 307 REMARK 465 VAL B 308 REMARK 465 GLU B 309 REMARK 465 GLN B 310 REMARK 465 ASN B 311 REMARK 465 PHE B 312 REMARK 465 PRO B 313 REMARK 465 ALA B 314 REMARK 465 ILE B 315 REMARK 465 ALA B 316 REMARK 465 ILE B 317 REMARK 465 HIS B 318 REMARK 465 ARG B 319 REMARK 465 GLY B 320 REMARK 465 MET B 321 REMARK 465 PRO B 322 REMARK 465 GLN B 323 REMARK 465 GLU B 324 REMARK 465 GLU B 325 REMARK 465 ARG B 326 REMARK 465 LEU B 327 REMARK 465 SER B 328 REMARK 465 ARG B 329 REMARK 465 TYR B 330 REMARK 465 GLN B 331 REMARK 465 GLN B 332 REMARK 465 PHE B 333 REMARK 465 LYS B 334 REMARK 465 ASP B 335 REMARK 465 PHE B 336 REMARK 465 GLN B 337 REMARK 465 ARG B 338 REMARK 465 ARG B 339 REMARK 465 ILE B 340 REMARK 465 LEU B 341 REMARK 465 VAL B 342 REMARK 465 ALA B 343 REMARK 465 THR B 344 REMARK 465 ASN B 345 REMARK 465 LEU B 346 REMARK 465 PHE B 347 REMARK 465 GLY B 348 REMARK 465 ARG B 349 REMARK 465 GLY B 350 REMARK 465 MET B 351 REMARK 465 ASP B 352 REMARK 465 ILE B 353 REMARK 465 GLU B 354 REMARK 465 ARG B 355 REMARK 465 VAL B 356 REMARK 465 ASN B 357 REMARK 465 ILE B 358 REMARK 465 ALA B 359 REMARK 465 PHE B 360 REMARK 465 ASN B 361 REMARK 465 TYR B 362 REMARK 465 ASP B 363 REMARK 465 MET B 364 REMARK 465 PRO B 365 REMARK 465 GLU B 366 REMARK 465 ASP B 367 REMARK 465 SER B 368 REMARK 465 ASP B 369 REMARK 465 THR B 370 REMARK 465 TYR B 371 REMARK 465 LEU B 372 REMARK 465 HIS B 373 REMARK 465 ARG B 374 REMARK 465 VAL B 375 REMARK 465 ALA B 376 REMARK 465 ARG B 377 REMARK 465 ALA B 378 REMARK 465 GLY B 379 REMARK 465 ARG B 380 REMARK 465 PHE B 381 REMARK 465 GLY B 382 REMARK 465 THR B 383 REMARK 465 LYS B 384 REMARK 465 GLY B 385 REMARK 465 LEU B 386 REMARK 465 ALA B 387 REMARK 465 ILE B 388 REMARK 465 THR B 389 REMARK 465 PHE B 390 REMARK 465 VAL B 391 REMARK 465 SER B 392 REMARK 465 ASP B 393 REMARK 465 GLU B 394 REMARK 465 ASN B 395 REMARK 465 ASP B 396 REMARK 465 ALA B 397 REMARK 465 LYS B 398 REMARK 465 ILE B 399 REMARK 465 LEU B 400 REMARK 465 ASN B 401 REMARK 465 ASP B 402 REMARK 465 VAL B 403 REMARK 465 GLN B 404 REMARK 465 ASP B 405 REMARK 465 ARG B 406 REMARK 465 PHE B 407 REMARK 465 GLU B 408 REMARK 465 VAL B 409 REMARK 465 ASN B 410 REMARK 465 ILE B 411 REMARK 465 SER B 412 REMARK 465 GLU B 413 REMARK 465 LEU B 414 REMARK 465 PRO B 415 REMARK 465 ASP B 416 REMARK 465 GLU B 417 REMARK 465 ILE B 418 REMARK 465 ASP B 419 REMARK 465 ILE B 420 REMARK 465 SER B 421 REMARK 465 SER B 422 REMARK 465 TYR B 423 REMARK 465 ILE B 424 REMARK 465 GLU B 425 REMARK 465 GLN B 426 REMARK 465 THR B 427 REMARK 465 ARG B 428 REMARK 465 GLY C 95 REMARK 465 PRO C 96 REMARK 465 ASP C 97 REMARK 465 MET C 98 REMARK 465 THR C 99 REMARK 465 ARG C 122 REMARK 465 VAL C 123 REMARK 465 LYS C 124 REMARK 465 SER C 180 REMARK 465 SER C 181 REMARK 465 ALA C 182 REMARK 465 ASP C 183 REMARK 465 GLN C 184 REMARK 465 GLU C 444 REMARK 465 GLY C 445 REMARK 465 LEU C 446 REMARK 465 SER C 447 REMARK 465 GLU C 493 REMARK 465 SER C 494 REMARK 465 LEU C 495 REMARK 465 ALA C 496 REMARK 465 ALA C 497 REMARK 465 GLU C 498 REMARK 465 LEU C 499 REMARK 465 MET D -3 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 HIS D 3 REMARK 465 ALA D 37 REMARK 465 ASN D 38 REMARK 465 PRO D 39 REMARK 465 ARG D 40 REMARK 465 LEU D 41 REMARK 465 GLN D 42 REMARK 465 MET D 43 REMARK 465 ALA D 44 REMARK 465 SER D 45 REMARK 465 PRO D 46 REMARK 465 LYS D 129 REMARK 465 GLY D 130 REMARK 465 LYS D 131 REMARK 465 SER D 132 REMARK 465 LYS D 133 REMARK 465 VAL D 134 REMARK 465 GLY D 135 REMARK 465 CYS D 399 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 GLU E 3 REMARK 465 LYS E 4 REMARK 465 LYS E 5 REMARK 465 GLN E 6 REMARK 465 PRO E 7 REMARK 465 VAL E 8 REMARK 465 ASP E 9 REMARK 465 LEU E 10 REMARK 465 GLY E 11 REMARK 465 LEU E 12 REMARK 465 LEU E 13 REMARK 465 GLU E 14 REMARK 465 GLU E 15 REMARK 465 ASP E 16 REMARK 465 THR E 69 REMARK 465 SER E 70 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 ASP B 252 CG OD1 OD2 REMARK 470 ILE D 4 CG1 CG2 CD1 REMARK 470 VAL D 36 CG1 CG2 REMARK 470 GLU D 47 CG CD OE1 OE2 REMARK 470 GLU D 48 CG CD OE1 OE2 REMARK 470 LYS D 49 CG CD CE NZ REMARK 470 CYS D 50 SG REMARK 470 GLN D 51 CG CD OE1 NE2 REMARK 470 GLN D 52 CG CD OE1 NE2 REMARK 470 GLU D 55 CG CD OE1 OE2 REMARK 470 ASP D 59 CG OD1 OD2 REMARK 470 GLU D 60 CG CD OE1 OE2 REMARK 470 CYS D 68 SG REMARK 470 TYR D 70 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 128 CG CD CE NZ REMARK 470 GLU D 353 CG CD OE1 OE2 REMARK 470 ASP D 354 CG OD1 OD2 REMARK 470 ASP E 33 CG OD1 OD2 REMARK 470 GLU E 34 CG CD OE1 OE2 REMARK 470 ASP E 35 CG OD1 OD2 REMARK 470 ASP E 41 CG OD1 OD2 REMARK 470 ASP E 45 CG OD1 OD2 REMARK 470 ASP E 46 CG OD1 OD2 REMARK 470 ASN E 47 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 245 70.65 52.26 REMARK 500 PRO C 243 9.62 -69.52 REMARK 500 ASN C 296 45.96 -82.40 REMARK 500 LYS C 297 -14.61 -141.23 REMARK 500 ASN C 334 55.88 -92.17 REMARK 500 VAL C 392 -60.99 -90.22 REMARK 500 PRO D 57 -2.44 -59.23 REMARK 500 ASN D 102 54.23 -92.41 REMARK 500 HIS D 301 41.18 -109.30 REMARK 500 ASN E 42 50.83 -92.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 96 OG1 REMARK 620 2 ADP B 501 O1B 84.8 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-55619 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE HUMAN GANP-PCID2-DSS1 COMPLEX BOUND TO REMARK 900 UAP56 DBREF 9T6N B 1 428 UNP Q13838 DX39B_HUMAN 1 428 DBREF 9T6N C 99 499 UNP O60318 GANP_HUMAN 598 998 DBREF 9T6N D 1 399 UNP Q5JVF3 PCID2_HUMAN 1 399 DBREF 9T6N E 1 70 UNP P60896 SEM1_HUMAN 1 70 SEQADV 9T6N GLY B -3 UNP Q13838 EXPRESSION TAG SEQADV 9T6N PRO B -2 UNP Q13838 EXPRESSION TAG SEQADV 9T6N ASP B -1 UNP Q13838 EXPRESSION TAG SEQADV 9T6N SER B 0 UNP Q13838 EXPRESSION TAG SEQADV 9T6N GLY C 95 UNP O60318 EXPRESSION TAG SEQADV 9T6N PRO C 96 UNP O60318 EXPRESSION TAG SEQADV 9T6N ASP C 97 UNP O60318 EXPRESSION TAG SEQADV 9T6N MET C 98 UNP O60318 EXPRESSION TAG SEQADV 9T6N MET D -3 UNP Q5JVF3 INITIATING METHIONINE SEQADV 9T6N GLY D -2 UNP Q5JVF3 EXPRESSION TAG SEQADV 9T6N SER D -1 UNP Q5JVF3 EXPRESSION TAG SEQADV 9T6N SER D 0 UNP Q5JVF3 EXPRESSION TAG SEQRES 1 B 432 GLY PRO ASP SER MET ALA GLU ASN ASP VAL ASP ASN GLU SEQRES 2 B 432 LEU LEU ASP TYR GLU ASP ASP GLU VAL GLU THR ALA ALA SEQRES 3 B 432 GLY GLY ASP GLY ALA GLU ALA PRO ALA LYS LYS ASP VAL SEQRES 4 B 432 LYS GLY SER TYR VAL SER ILE HIS SER SER GLY PHE ARG SEQRES 5 B 432 ASP PHE LEU LEU LYS PRO GLU LEU LEU ARG ALA ILE VAL SEQRES 6 B 432 ASP CYS GLY PHE GLU HIS PRO SER GLU VAL GLN HIS GLU SEQRES 7 B 432 CYS ILE PRO GLN ALA ILE LEU GLY MET ASP VAL LEU CYS SEQRES 8 B 432 GLN ALA LYS SER GLY MET GLY LYS THR ALA VAL PHE VAL SEQRES 9 B 432 LEU ALA THR LEU GLN GLN LEU GLU PRO VAL THR GLY GLN SEQRES 10 B 432 VAL SER VAL LEU VAL MET CYS HIS THR ARG GLU LEU ALA SEQRES 11 B 432 PHE GLN ILE SER LYS GLU TYR GLU ARG PHE SER LYS TYR SEQRES 12 B 432 MET PRO ASN VAL LYS VAL ALA VAL PHE PHE GLY GLY LEU SEQRES 13 B 432 SER ILE LYS LYS ASP GLU GLU VAL LEU LYS LYS ASN CYS SEQRES 14 B 432 PRO HIS ILE VAL VAL GLY THR PRO GLY ARG ILE LEU ALA SEQRES 15 B 432 LEU ALA ARG ASN LYS SER LEU ASN LEU LYS HIS ILE LYS SEQRES 16 B 432 HIS PHE ILE LEU ASP GLU CYS ASP LYS MET LEU GLU GLN SEQRES 17 B 432 LEU ASP MET ARG ARG ASP VAL GLN GLU ILE PHE ARG MET SEQRES 18 B 432 THR PRO HIS GLU LYS GLN VAL MET MET PHE SER ALA THR SEQRES 19 B 432 LEU SER LYS GLU ILE ARG PRO VAL CYS ARG LYS PHE MET SEQRES 20 B 432 GLN ASP PRO MET GLU ILE PHE VAL ASP ASP GLU THR LYS SEQRES 21 B 432 LEU THR LEU HIS GLY LEU GLN GLN TYR TYR VAL LYS LEU SEQRES 22 B 432 LYS ASP ASN GLU LYS ASN ARG LYS LEU PHE ASP LEU LEU SEQRES 23 B 432 ASP VAL LEU GLU PHE ASN GLN VAL VAL ILE PHE VAL LYS SEQRES 24 B 432 SER VAL GLN ARG CYS ILE ALA LEU ALA GLN LEU LEU VAL SEQRES 25 B 432 GLU GLN ASN PHE PRO ALA ILE ALA ILE HIS ARG GLY MET SEQRES 26 B 432 PRO GLN GLU GLU ARG LEU SER ARG TYR GLN GLN PHE LYS SEQRES 27 B 432 ASP PHE GLN ARG ARG ILE LEU VAL ALA THR ASN LEU PHE SEQRES 28 B 432 GLY ARG GLY MET ASP ILE GLU ARG VAL ASN ILE ALA PHE SEQRES 29 B 432 ASN TYR ASP MET PRO GLU ASP SER ASP THR TYR LEU HIS SEQRES 30 B 432 ARG VAL ALA ARG ALA GLY ARG PHE GLY THR LYS GLY LEU SEQRES 31 B 432 ALA ILE THR PHE VAL SER ASP GLU ASN ASP ALA LYS ILE SEQRES 32 B 432 LEU ASN ASP VAL GLN ASP ARG PHE GLU VAL ASN ILE SER SEQRES 33 B 432 GLU LEU PRO ASP GLU ILE ASP ILE SER SER TYR ILE GLU SEQRES 34 B 432 GLN THR ARG SEQRES 1 C 405 GLY PRO ASP MET THR VAL ALA GLU THR SER LYS GLU LYS SEQRES 2 C 405 TYR ARG LEU LEU ASP GLN ARG ASP ARG ILE MET ARG GLN SEQRES 3 C 405 ALA ARG VAL LYS ARG THR ASP LEU ASP LYS ALA ARG THR SEQRES 4 C 405 PHE VAL GLY THR CYS LEU ASP MET CYS PRO GLU LYS GLU SEQRES 5 C 405 ARG TYR MET ARG GLU THR ARG SER GLN LEU SER VAL PHE SEQRES 6 C 405 GLU VAL VAL PRO GLY THR ASP GLN VAL ASP HIS ALA ALA SEQRES 7 C 405 ALA VAL LYS GLU TYR SER ARG SER SER ALA ASP GLN GLU SEQRES 8 C 405 GLU PRO LEU PRO HIS GLU LEU ARG PRO LEU PRO VAL LEU SEQRES 9 C 405 SER ARG THR MET ASP TYR LEU VAL THR GLN ILE MET ASP SEQRES 10 C 405 GLN LYS GLU GLY SER LEU ARG ASP TRP TYR ASP PHE VAL SEQRES 11 C 405 TRP ASN ARG THR ARG GLY ILE ARG LYS ASP ILE THR GLN SEQRES 12 C 405 GLN HIS LEU CYS ASP PRO LEU THR VAL SER LEU ILE GLU SEQRES 13 C 405 LYS CYS THR ARG PHE HIS ILE HIS CYS ALA HIS PHE MET SEQRES 14 C 405 CYS GLU GLU PRO MET SER SER PHE ASP ALA LYS ILE ASN SEQRES 15 C 405 ASN GLU ASN MET THR LYS CYS LEU GLN SER LEU LYS GLU SEQRES 16 C 405 MET TYR GLN ASP LEU ARG ASN LYS GLY VAL PHE CYS ALA SEQRES 17 C 405 SER GLU ALA GLU PHE GLN GLY TYR ASN VAL LEU LEU SER SEQRES 18 C 405 LEU ASN LYS GLY ASP ILE LEU ARG GLU VAL GLN GLN PHE SEQRES 19 C 405 HIS PRO ALA VAL ARG ASN SER SER GLU VAL LYS PHE ALA SEQRES 20 C 405 VAL GLN ALA PHE ALA ALA LEU ASN SER ASN ASN PHE VAL SEQRES 21 C 405 ARG PHE PHE LYS LEU VAL GLN SER ALA SER TYR LEU ASN SEQRES 22 C 405 ALA CYS LEU LEU HIS CYS TYR PHE SER GLN ILE ARG LYS SEQRES 23 C 405 ASP ALA LEU ARG ALA LEU ASN PHE ALA TYR THR VAL SER SEQRES 24 C 405 THR GLN ARG SER THR ILE PHE PRO LEU ASP GLY VAL VAL SEQRES 25 C 405 ARG MET LEU LEU PHE ARG ASP CYS GLU GLU ALA THR ASP SEQRES 26 C 405 PHE LEU THR CYS HIS GLY LEU THR VAL SER ASP GLY CYS SEQRES 27 C 405 VAL GLU LEU ASN ARG SER ALA PHE LEU GLU PRO GLU GLY SEQRES 28 C 405 LEU SER LYS THR ARG LYS SER VAL PHE ILE THR ARG LYS SEQRES 29 C 405 LEU THR VAL SER VAL GLY GLU ILE VAL ASN GLY GLY PRO SEQRES 30 C 405 LEU PRO PRO VAL PRO ARG HIS THR PRO VAL CYS SER PHE SEQRES 31 C 405 ASN SER GLN ASN LYS TYR ILE GLY GLU SER LEU ALA ALA SEQRES 32 C 405 GLU LEU SEQRES 1 D 403 MET GLY SER SER MET ALA HIS ILE THR ILE ASN GLN TYR SEQRES 2 D 403 LEU GLN GLN VAL TYR GLU ALA ILE ASP SER ARG ASP GLY SEQRES 3 D 403 ALA SER CYS ALA GLU LEU VAL SER PHE LYS HIS PRO HIS SEQRES 4 D 403 VAL ALA ASN PRO ARG LEU GLN MET ALA SER PRO GLU GLU SEQRES 5 D 403 LYS CYS GLN GLN VAL LEU GLU PRO PRO TYR ASP GLU MET SEQRES 6 D 403 PHE ALA ALA HIS LEU ARG CYS THR TYR ALA VAL GLY ASN SEQRES 7 D 403 HIS ASP PHE ILE GLU ALA TYR LYS CYS GLN THR VAL ILE SEQRES 8 D 403 VAL GLN SER PHE LEU ARG ALA PHE GLN ALA HIS LYS GLU SEQRES 9 D 403 GLU ASN TRP ALA LEU PRO VAL MET TYR ALA VAL ALA LEU SEQRES 10 D 403 ASP LEU ARG VAL PHE ALA ASN ASN ALA ASP GLN GLN LEU SEQRES 11 D 403 VAL LYS LYS GLY LYS SER LYS VAL GLY ASP MET LEU GLU SEQRES 12 D 403 LYS ALA ALA GLU LEU LEU MET SER CYS PHE ARG VAL CYS SEQRES 13 D 403 ALA SER ASP THR ARG ALA GLY ILE GLU ASP SER LYS LYS SEQRES 14 D 403 TRP GLY MET LEU PHE LEU VAL ASN GLN LEU PHE LYS ILE SEQRES 15 D 403 TYR PHE LYS ILE ASN LYS LEU HIS LEU CYS LYS PRO LEU SEQRES 16 D 403 ILE ARG ALA ILE ASP SER SER ASN LEU LYS ASP ASP TYR SEQRES 17 D 403 SER THR ALA GLN ARG VAL THR TYR LYS TYR TYR VAL GLY SEQRES 18 D 403 ARG LYS ALA MET PHE ASP SER ASP PHE LYS GLN ALA GLU SEQRES 19 D 403 GLU TYR LEU SER PHE ALA PHE GLU HIS CYS HIS ARG SER SEQRES 20 D 403 SER GLN LYS ASN LYS ARG MET ILE LEU ILE TYR LEU LEU SEQRES 21 D 403 PRO VAL LYS MET LEU LEU GLY HIS MET PRO THR VAL GLU SEQRES 22 D 403 LEU LEU LYS LYS TYR HIS LEU MET GLN PHE ALA GLU VAL SEQRES 23 D 403 THR ARG ALA VAL SER GLU GLY ASN LEU LEU LEU LEU HIS SEQRES 24 D 403 GLU ALA LEU ALA LYS HIS GLU ALA PHE PHE ILE ARG CYS SEQRES 25 D 403 GLY ILE PHE LEU ILE LEU GLU LYS LEU LYS ILE ILE THR SEQRES 26 D 403 TYR ARG ASN LEU PHE LYS LYS VAL TYR LEU LEU LEU LYS SEQRES 27 D 403 THR HIS GLN LEU SER LEU ASP ALA PHE LEU VAL ALA LEU SEQRES 28 D 403 LYS PHE MET GLN VAL GLU ASP VAL ASP ILE ASP GLU VAL SEQRES 29 D 403 GLN CYS ILE LEU ALA ASN LEU ILE TYR MET GLY HIS VAL SEQRES 30 D 403 LYS GLY TYR ILE SER HIS GLN HIS GLN LYS LEU VAL VAL SEQRES 31 D 403 SER LYS GLN ASN PRO PHE PRO PRO LEU SER THR VAL CYS SEQRES 1 E 70 MET SER GLU LYS LYS GLN PRO VAL ASP LEU GLY LEU LEU SEQRES 2 E 70 GLU GLU ASP ASP GLU PHE GLU GLU PHE PRO ALA GLU ASP SEQRES 3 E 70 TRP ALA GLY LEU ASP GLU ASP GLU ASP ALA HIS VAL TRP SEQRES 4 E 70 GLU ASP ASN TRP ASP ASP ASP ASN VAL GLU ASP ASP PHE SEQRES 5 E 70 SER ASN GLN LEU ARG ALA GLU LEU GLU LYS HIS GLY TYR SEQRES 6 E 70 LYS MET GLU THR SER HET ADP B 501 27 HET MG B 502 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 MG MG 2+ HELIX 1 AA1 GLY B 46 LEU B 51 5 6 HELIX 2 AA2 LYS B 53 CYS B 63 1 11 HELIX 3 AA3 SER B 69 GLY B 82 1 14 HELIX 4 AA4 GLY B 94 LEU B 107 1 14 HELIX 5 AA5 THR B 122 SER B 137 1 16 HELIX 6 AA6 LYS B 155 ASN B 164 1 10 HELIX 7 AA7 THR B 172 ASN B 182 1 11 HELIX 8 AA8 CYS B 198 GLU B 203 1 6 HELIX 9 AA9 ASP B 206 MET B 217 1 12 HELIX 10 AB1 ILE B 235 ARG B 240 1 6 HELIX 11 AB2 LYS B 241 MET B 243 5 3 HELIX 12 AB3 THR C 103 ALA C 121 1 19 HELIX 13 AB4 ASP C 127 ALA C 131 5 5 HELIX 14 AB5 PRO C 143 SER C 154 1 12 HELIX 15 AB6 ASP C 169 ALA C 173 5 5 HELIX 16 AB7 LEU C 188 LEU C 192 5 5 HELIX 17 AB8 PRO C 194 ILE C 209 1 16 HELIX 18 AB9 SER C 216 GLN C 238 1 23 HELIX 19 AC1 LEU C 244 MET C 263 1 20 HELIX 20 AC2 ASP C 272 ASN C 296 1 25 HELIX 21 AC3 GLU C 304 LEU C 314 1 11 HELIX 22 AC4 ASP C 320 GLN C 326 1 7 HELIX 23 AC5 HIS C 329 ASN C 334 1 6 HELIX 24 AC6 SER C 335 SER C 350 1 16 HELIX 25 AC7 ASN C 352 GLN C 361 1 10 HELIX 26 AC8 SER C 364 HIS C 372 1 9 HELIX 27 AC9 TYR C 374 TYR C 390 1 17 HELIX 28 AD1 LEU C 402 LEU C 410 1 9 HELIX 29 AD2 ASP C 413 CYS C 423 1 11 HELIX 30 AD3 SER C 452 ARG C 457 1 6 HELIX 31 AD4 SER C 462 GLY C 469 1 8 HELIX 32 AD5 THR D 5 SER D 19 1 15 HELIX 33 AD6 ASP D 21 LEU D 28 1 8 HELIX 34 AD7 GLU D 48 VAL D 53 5 6 HELIX 35 AD8 PRO D 57 GLY D 73 1 17 HELIX 36 AD9 ASP D 76 GLN D 96 1 21 HELIX 37 AE1 ALA D 104 LEU D 126 1 23 HELIX 38 AE2 MET D 137 SER D 154 1 18 HELIX 39 AE3 SER D 163 TRP D 166 5 4 HELIX 40 AE4 GLY D 167 ASN D 183 1 17 HELIX 41 AE5 LEU D 187 SER D 198 1 12 HELIX 42 AE6 SER D 205 ASP D 223 1 19 HELIX 43 AE7 ASP D 225 HIS D 239 1 15 HELIX 44 AE8 SER D 244 LEU D 261 1 18 HELIX 45 AE9 THR D 267 TYR D 274 1 8 HELIX 46 AF1 HIS D 275 GLN D 278 5 4 HELIX 47 AF2 PHE D 279 GLU D 288 1 10 HELIX 48 AF3 ASN D 290 HIS D 301 1 12 HELIX 49 AF4 HIS D 301 GLY D 309 1 9 HELIX 50 AF5 ILE D 313 LYS D 316 5 4 HELIX 51 AF6 LEU D 317 LYS D 334 1 18 HELIX 52 AF7 LEU D 340 MET D 350 1 11 HELIX 53 AF8 ASP D 356 GLY D 371 1 16 HELIX 54 AF9 PRO D 394 VAL D 398 5 5 HELIX 55 AG1 ALA E 28 GLU E 32 5 5 HELIX 56 AG2 ASP E 50 HIS E 63 1 14 SHEET 1 AA1 7 VAL B 145 PHE B 148 0 SHEET 2 AA1 7 ILE B 168 GLY B 171 1 O VAL B 170 N PHE B 148 SHEET 3 AA1 7 VAL B 116 MET B 119 1 N VAL B 118 O VAL B 169 SHEET 4 AA1 7 HIS B 192 ASP B 196 1 O ILE B 194 N LEU B 117 SHEET 5 AA1 7 GLN B 223 SER B 228 1 O GLN B 223 N PHE B 193 SHEET 6 AA1 7 VAL B 85 GLN B 88 1 N CYS B 87 O MET B 226 SHEET 7 AA1 7 MET B 247 PHE B 250 1 O MET B 247 N LEU B 86 SHEET 1 AA2 3 THR C 398 PRO C 401 0 SHEET 2 AA2 3 CYS C 432 LEU C 435 -1 O LEU C 435 N THR C 398 SHEET 3 AA2 3 THR C 427 SER C 429 -1 N THR C 427 O GLU C 434 SHEET 1 AA3 2 MET D 265 PRO D 266 0 SHEET 2 AA3 2 TRP E 39 GLU E 40 -1 O GLU E 40 N MET D 265 SHEET 1 AA4 3 GLN D 337 SER D 339 0 SHEET 2 AA4 3 LYS D 383 VAL D 386 -1 O LEU D 384 N LEU D 338 SHEET 3 AA4 3 GLY D 375 SER D 378 -1 N SER D 378 O LYS D 383 LINK OG1 THR B 96 MG MG B 502 1555 1555 2.23 LINK O1B ADP B 501 MG MG B 502 1555 1555 2.10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 465 8258 CONECT 8231 8232 8233 8234 8238 CONECT 8232 8231 8258 CONECT 8233 8231 CONECT 8234 8231 CONECT 8235 8236 8237 8238 8239 CONECT 8236 8235 CONECT 8237 8235 CONECT 8238 8231 8235 CONECT 8239 8235 8240 CONECT 8240 8239 8241 CONECT 8241 8240 8242 8243 CONECT 8242 8241 8247 CONECT 8243 8241 8244 8245 CONECT 8244 8243 CONECT 8245 8243 8246 8247 CONECT 8246 8245 CONECT 8247 8242 8245 8248 CONECT 8248 8247 8249 8257 CONECT 8249 8248 8250 CONECT 8250 8249 8251 CONECT 8251 8250 8252 8257 CONECT 8252 8251 8253 8254 CONECT 8253 8252 CONECT 8254 8252 8255 CONECT 8255 8254 8256 CONECT 8256 8255 8257 CONECT 8257 8248 8251 8256 CONECT 8258 465 8232 MASTER 466 0 2 56 15 0 0 6 8254 4 29 103 END