HEADER PLANT PROTEIN 27-NOV-25 9TFR TITLE COMPLEX OF BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PBY2 WITH THE TITLE 2 ENGINEERED INTEGRATED HMA DOMAIN OF RMO2 FROM BARLEY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENGINEERED INTEGRATED DOMAIN OF RMO2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PBY2 EFFECTOR; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE; SOURCE 3 ORGANISM_TAXID: 4513; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: PYRICULARIA ORYZAE; SOURCE 8 ORGANISM_TAXID: 318829; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, HMA DOMAIN, EFFECTOR, TANDEM KINASE PROTEIN, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.S.YU,M.J.BANFIELD REVDAT 1 19-AUG-26 9TFR 0 JRNL AUTH D.S.YU,M.J.BANFIELD JRNL TITL STRUCTURE OF THE INTEGRATED HMA DOMAIN FROM TKPS IN COMPLEX JRNL TITL 2 WITH MAGNAPORTHE ORYZAE EFFECTORS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.700 REMARK 3 FREE R VALUE TEST SET COUNT : 723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.92000 REMARK 3 B22 (A**2) : 1.92000 REMARK 3 B33 (A**2) : -6.23000 REMARK 3 B12 (A**2) : 0.96000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.373 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.250 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.605 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2080 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2121 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2800 ; 2.772 ; 1.834 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4905 ; 0.853 ; 1.796 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 8.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ;14.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;18.744 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 332 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2358 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 406 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1068 ; 7.080 ; 5.881 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1068 ; 7.084 ; 5.882 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1328 ; 9.338 ;10.529 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1329 ; 9.341 ;10.529 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1012 ; 8.285 ; 6.305 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1011 ; 8.254 ; 6.304 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1473 ;11.130 ;11.393 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2229 ;12.315 ;53.450 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2230 ;12.314 ;53.460 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4583 -0.0788 8.1503 REMARK 3 T TENSOR REMARK 3 T11: 0.3472 T22: 0.3300 REMARK 3 T33: 0.3151 T12: 0.1022 REMARK 3 T13: -0.1203 T23: 0.0843 REMARK 3 L TENSOR REMARK 3 L11: 7.2822 L22: 7.3306 REMARK 3 L33: 6.9610 L12: -1.0300 REMARK 3 L13: -0.1394 L23: -0.2808 REMARK 3 S TENSOR REMARK 3 S11: -0.2487 S12: -0.0277 S13: 0.2303 REMARK 3 S21: -0.0349 S22: 0.1200 S23: 0.9096 REMARK 3 S31: -0.1186 S32: -1.2029 S33: 0.1286 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): 37.1384 -9.5389 -10.0796 REMARK 3 T TENSOR REMARK 3 T11: 0.3760 T22: 0.2097 REMARK 3 T33: 0.1496 T12: -0.1291 REMARK 3 T13: -0.1213 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 6.9102 L22: 6.5650 REMARK 3 L33: 5.9774 L12: 0.1324 REMARK 3 L13: -1.3695 L23: 2.5348 REMARK 3 S TENSOR REMARK 3 S11: -0.1671 S12: 1.1174 S13: -0.3681 REMARK 3 S21: -0.3803 S22: 0.1200 S23: 0.7077 REMARK 3 S31: -0.3522 S32: -0.1851 S33: 0.0471 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 24 C 84 REMARK 3 ORIGIN FOR THE GROUP (A): 48.5452 -0.1895 -0.3294 REMARK 3 T TENSOR REMARK 3 T11: 0.3934 T22: 0.1233 REMARK 3 T33: 0.1046 T12: -0.1428 REMARK 3 T13: -0.0920 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 7.9889 L22: 3.0903 REMARK 3 L33: 4.9021 L12: 1.1183 REMARK 3 L13: -1.6855 L23: -2.3496 REMARK 3 S TENSOR REMARK 3 S11: -0.1771 S12: 0.6115 S13: 0.5840 REMARK 3 S21: -0.0748 S22: 0.1778 S23: -0.1886 REMARK 3 S31: -0.5200 S32: 0.2590 S33: -0.0007 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 24 D 84 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3762 -8.6545 16.5857 REMARK 3 T TENSOR REMARK 3 T11: 0.2438 T22: 0.1201 REMARK 3 T33: 0.0942 T12: 0.0245 REMARK 3 T13: -0.0673 T23: 0.0553 REMARK 3 L TENSOR REMARK 3 L11: 6.2611 L22: 4.4501 REMARK 3 L33: 8.7628 L12: -0.5608 REMARK 3 L13: -0.0863 L23: 4.2908 REMARK 3 S TENSOR REMARK 3 S11: -0.1613 S12: -0.5720 S13: -0.3924 REMARK 3 S21: 0.0810 S22: 0.0186 S23: 0.2758 REMARK 3 S31: 0.1182 S32: -0.5389 S33: 0.1427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9TFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292152602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953709 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 88.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 41.50 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 42.90 REMARK 200 R MERGE FOR SHELL (I) : 2.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4, 20% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.40933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.81867 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 58.81867 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.40933 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 74 REMARK 465 LYS A 75 REMARK 465 TYR A 76 REMARK 465 SER A 77 REMARK 465 SER A 78 REMARK 465 LYS B 75 REMARK 465 TYR B 76 REMARK 465 SER B 77 REMARK 465 SER B 78 REMARK 465 GLY C 18 REMARK 465 PRO C 19 REMARK 465 MET C 20 REMARK 465 LYS C 21 REMARK 465 LYS C 22 REMARK 465 PRO C 23 REMARK 465 GLN C 85 REMARK 465 GLY D 18 REMARK 465 PRO D 19 REMARK 465 MET D 20 REMARK 465 LYS D 21 REMARK 465 LYS D 22 REMARK 465 PRO D 23 REMARK 465 GLN D 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 28 N - CA - CB ANGL. DEV. = -14.7 DEGREES REMARK 500 LYS A 41 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 LEU A 61 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 GLU A 72 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 MET B 1 CG - SD - CE ANGL. DEV. = 20.0 DEGREES REMARK 500 MET B 5 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 THR C 29 CA - CB - OG1 ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG C 32 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 CYS C 68 CB - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG D 32 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 ARG D 37 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 THR D 54 CA - CB - OG1 ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG D 74 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 28 -99.05 12.24 REMARK 500 ALA C 62 139.19 -33.85 REMARK 500 SER C 80 119.62 -162.66 REMARK 500 VAL D 83 -52.14 -141.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 57 0.18 SIDE CHAIN REMARK 500 ARG D 37 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9TFR A 1 78 PDB 9TFR 9TFR 1 78 DBREF 9TFR B 1 78 PDB 9TFR 9TFR 1 78 DBREF 9TFR C 18 85 PDB 9TFR 9TFR 18 85 DBREF 9TFR D 18 85 PDB 9TFR 9TFR 18 85 SEQRES 1 A 78 MET LYS GLN LYS MET VAL LEU LYS ALA GLU LEU LYS ASP SEQRES 2 A 78 ASP LYS GLN LYS VAL LYS ALA VAL LYS ALA LEU SER VAL SEQRES 3 A 78 LEU PRO GLY ILE ASP GLN ILE SER VAL ASP MET LYS HIS SEQRES 4 A 78 GLY LYS ILE THR VAL VAL GLY ASP GLY VAL ASP PRO VAL SEQRES 5 A 78 ASP VAL VAL ALA ARG MET ARG LYS LEU PHE PRO ASN ALA SEQRES 6 A 78 GLN ILE LEU ALA VAL GLY GLU ALA SER LYS TYR SER SER SEQRES 1 B 78 MET LYS GLN LYS MET VAL LEU LYS ALA GLU LEU LYS ASP SEQRES 2 B 78 ASP LYS GLN LYS VAL LYS ALA VAL LYS ALA LEU SER VAL SEQRES 3 B 78 LEU PRO GLY ILE ASP GLN ILE SER VAL ASP MET LYS HIS SEQRES 4 B 78 GLY LYS ILE THR VAL VAL GLY ASP GLY VAL ASP PRO VAL SEQRES 5 B 78 ASP VAL VAL ALA ARG MET ARG LYS LEU PHE PRO ASN ALA SEQRES 6 B 78 GLN ILE LEU ALA VAL GLY GLU ALA SER LYS TYR SER SER SEQRES 1 C 68 GLY PRO MET LYS LYS PRO GLU GLU TRP CYS TYR THR THR SEQRES 2 C 68 ILE ARG ASN PRO SER GLY ARG LEU ILE TYR ASP GLU LYS SEQRES 3 C 68 ALA GLN PRO LYS SER ILE ILE SER HIS ILE THR ASN LEU SEQRES 4 C 68 LYS VAL ILE VAL LYS ALA ASN CYS ALA VAL SER CYS SER SEQRES 5 C 68 PRO ARG ASP CYS ARG GLY TYR GLU VAL GLY SER THR GLN SEQRES 6 C 68 VAL GLU GLN SEQRES 1 D 68 GLY PRO MET LYS LYS PRO GLU GLU TRP CYS TYR THR THR SEQRES 2 D 68 ILE ARG ASN PRO SER GLY ARG LEU ILE TYR ASP GLU LYS SEQRES 3 D 68 ALA GLN PRO LYS SER ILE ILE SER HIS ILE THR ASN LEU SEQRES 4 D 68 LYS VAL ILE VAL LYS ALA ASN CYS ALA VAL SER CYS SER SEQRES 5 D 68 PRO ARG ASP CYS ARG GLY TYR GLU VAL GLY SER THR GLN SEQRES 6 D 68 VAL GLU GLN FORMUL 5 HOH *26(H2 O) HELIX 1 AA1 ASP A 13 VAL A 26 1 14 HELIX 2 AA2 ASP A 50 PHE A 62 1 13 HELIX 3 AA3 ASP B 13 VAL B 26 1 14 HELIX 4 AA4 ASP B 50 LYS B 60 1 11 HELIX 5 AA5 ALA C 62 CYS C 64 5 3 HELIX 6 AA6 ASP C 72 TYR C 76 5 5 HELIX 7 AA7 ALA D 62 CYS D 64 5 3 HELIX 8 AA8 ASP D 72 TYR D 76 5 5 SHEET 1 AA1 7 GLN A 66 GLY A 71 0 SHEET 2 AA1 7 GLN A 3 LYS A 8 -1 N VAL A 6 O LEU A 68 SHEET 3 AA1 7 LYS A 41 GLY A 46 -1 O ILE A 42 N LEU A 7 SHEET 4 AA1 7 ILE A 30 ASP A 36 -1 N ASP A 31 O VAL A 45 SHEET 5 AA1 7 LEU D 38 ALA D 44 1 O ASP D 41 N VAL A 35 SHEET 6 AA1 7 CYS D 27 ARG D 32 -1 N CYS D 27 O ALA D 44 SHEET 7 AA1 7 GLU D 77 GLN D 82 -1 O GLU D 77 N ARG D 32 SHEET 1 AA2 7 GLN B 66 GLU B 72 0 SHEET 2 AA2 7 GLN B 3 LYS B 8 -1 N VAL B 6 O LEU B 68 SHEET 3 AA2 7 LYS B 41 GLY B 46 -1 O ILE B 42 N LEU B 7 SHEET 4 AA2 7 ILE B 30 ASP B 36 -1 N SER B 34 O THR B 43 SHEET 5 AA2 7 LEU C 38 ALA C 44 1 O LYS C 43 N VAL B 35 SHEET 6 AA2 7 CYS C 27 ARG C 32 -1 N CYS C 27 O ALA C 44 SHEET 7 AA2 7 GLU C 77 GLN C 82 -1 O GLU C 77 N ARG C 32 SHEET 1 AA3 3 SER C 48 ILE C 50 0 SHEET 2 AA3 3 LYS C 57 LYS C 61 -1 O VAL C 60 N SER C 48 SHEET 3 AA3 3 ALA C 65 SER C 69 -1 O ALA C 65 N LYS C 61 SHEET 1 AA4 3 SER D 48 ILE D 50 0 SHEET 2 AA4 3 LYS D 57 LYS D 61 -1 O VAL D 60 N SER D 48 SHEET 3 AA4 3 ALA D 65 SER D 69 -1 O ALA D 65 N LYS D 61 SSBOND 1 CYS C 27 CYS C 64 1555 1555 2.29 SSBOND 2 CYS C 68 CYS C 73 1555 1555 2.35 SSBOND 3 CYS D 27 CYS D 64 1555 1555 2.08 SSBOND 4 CYS D 68 CYS D 73 1555 1555 2.45 CISPEP 1 PRO C 46 LYS C 47 0 14.76 CISPEP 2 SER C 69 PRO C 70 0 -0.37 CISPEP 3 PRO D 46 LYS D 47 0 12.40 CISPEP 4 SER D 69 PRO D 70 0 0.54 CRYST1 90.075 90.075 88.228 90.00 90.00 120.00 P 31 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011102 0.006410 0.000000 0.00000 SCALE2 0.000000 0.012819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011334 0.00000 CONECT 1140 1433 CONECT 1433 1140 CONECT 1457 1495 CONECT 1495 1457 CONECT 1619 1912 CONECT 1912 1619 CONECT 1936 1974 CONECT 1974 1936 MASTER 422 0 0 8 20 0 0 6 2082 4 8 24 END