data_9TKA # _entry.id 9TKA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9TKA pdb_00009tka 10.2210/pdb9tka/pdb WWPDB D_1292152870 ? ? EMDB EMD-56022 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-07-29 ? 2 'EM metadata' 1 0 2026-07-29 ? 3 FSC 1 0 2026-07-29 ? 4 'Half map' 1 0 2026-07-29 1 5 'Half map' 1 0 2026-07-29 2 6 Image 1 0 2026-07-29 ? 7 Mask 1 0 2026-07-29 1 8 'Primary map' 1 0 2026-07-29 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9TKA _pdbx_database_status.recvd_initial_deposition_date 2025-12-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of human CLN8 in the presence of oleate' _pdbx_database_related.db_id EMD-56022 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email kp416@cam.ac.uk _pdbx_contact_author.name_first Kasparas _pdbx_contact_author.name_last Petkevicius _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-2295-6065 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lacabanne, D.' 1 0000-0002-8911-3794 'Sheokand, P.K.' 2 0000-0002-0846-3398 'Ruprecht, J.J.' 3 0000-0002-1838-7245 'Petkevicius, K.' 4 0000-0003-2295-6065 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Stereospecific GPG acylation by CLN8 drives BMP biosynthesis and underpins Batten disease' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sheokand, P.K.' 1 ? primary 'Lacabanne, D.' 2 ? primary 'James, A.M.' 3 ? primary 'Ruprecht, J.J.' 4 ? primary 'van der Kleij, J.' 5 ? primary 'Muller-Niva, J.' 6 ? primary 'Salo, M.H.' 7 ? primary 'Juneja, N.' 8 ? primary 'Jenkins, J.' 9 ? primary 'Shun Yu, C.' 10 ? primary 'Pratt, M.A.' 11 ? primary 'King, M.S.' 12 ? primary 'Weimer, J.M.' 13 ? primary 'Koulman, A.' 14 ? primary 'Hinttala, R.' 15 ? primary 'Santorelli, F.M.' 16 ? primary 'Murphy, M.P.' 17 ? primary 'Kunji, E.R.S.' 18 ? primary 'Petkevicus, K.' 19 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein CLN8' 33532.996 1 ? ? ? ? 2 non-polymer syn 'COENZYME A' 767.534 1 ? ? ? ? 3 non-polymer syn 'OLEIC ACID' 282.461 1 ? ? ? ? 4 water nat water 18.015 11 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNPASDGGTSESIFDLDYASWGIRSTLMVAGFVFYLGVFVVCHQLSSSLNATYRSLVAREKVFWDLAATRAVFGVQSTAA GLWALLGDPVLHADKARGQQNWCWFHITTATGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLA MTTLLLEMSTPFTCVSWMLLKAGWSESLFWKLNQWLMIHMFHCRMVLTYHMWWVCFWHWDGLVSSLYLPHLTLFLVGLAL LTLIINPYWTHKKTQQLLNPVDWNFAQPEAKSRPEGNGQLLRKKRPDAAIEGR ; _entity_poly.pdbx_seq_one_letter_code_can ;MNPASDGGTSESIFDLDYASWGIRSTLMVAGFVFYLGVFVVCHQLSSSLNATYRSLVAREKVFWDLAATRAVFGVQSTAA GLWALLGDPVLHADKARGQQNWCWFHITTATGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLA MTTLLLEMSTPFTCVSWMLLKAGWSESLFWKLNQWLMIHMFHCRMVLTYHMWWVCFWHWDGLVSSLYLPHLTLFLVGLAL LTLIINPYWTHKKTQQLLNPVDWNFAQPEAKSRPEGNGQLLRKKRPDAAIEGR ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COENZYME A' COA 3 'OLEIC ACID' OLA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 PRO n 1 4 ALA n 1 5 SER n 1 6 ASP n 1 7 GLY n 1 8 GLY n 1 9 THR n 1 10 SER n 1 11 GLU n 1 12 SER n 1 13 ILE n 1 14 PHE n 1 15 ASP n 1 16 LEU n 1 17 ASP n 1 18 TYR n 1 19 ALA n 1 20 SER n 1 21 TRP n 1 22 GLY n 1 23 ILE n 1 24 ARG n 1 25 SER n 1 26 THR n 1 27 LEU n 1 28 MET n 1 29 VAL n 1 30 ALA n 1 31 GLY n 1 32 PHE n 1 33 VAL n 1 34 PHE n 1 35 TYR n 1 36 LEU n 1 37 GLY n 1 38 VAL n 1 39 PHE n 1 40 VAL n 1 41 VAL n 1 42 CYS n 1 43 HIS n 1 44 GLN n 1 45 LEU n 1 46 SER n 1 47 SER n 1 48 SER n 1 49 LEU n 1 50 ASN n 1 51 ALA n 1 52 THR n 1 53 TYR n 1 54 ARG n 1 55 SER n 1 56 LEU n 1 57 VAL n 1 58 ALA n 1 59 ARG n 1 60 GLU n 1 61 LYS n 1 62 VAL n 1 63 PHE n 1 64 TRP n 1 65 ASP n 1 66 LEU n 1 67 ALA n 1 68 ALA n 1 69 THR n 1 70 ARG n 1 71 ALA n 1 72 VAL n 1 73 PHE n 1 74 GLY n 1 75 VAL n 1 76 GLN n 1 77 SER n 1 78 THR n 1 79 ALA n 1 80 ALA n 1 81 GLY n 1 82 LEU n 1 83 TRP n 1 84 ALA n 1 85 LEU n 1 86 LEU n 1 87 GLY n 1 88 ASP n 1 89 PRO n 1 90 VAL n 1 91 LEU n 1 92 HIS n 1 93 ALA n 1 94 ASP n 1 95 LYS n 1 96 ALA n 1 97 ARG n 1 98 GLY n 1 99 GLN n 1 100 GLN n 1 101 ASN n 1 102 TRP n 1 103 CYS n 1 104 TRP n 1 105 PHE n 1 106 HIS n 1 107 ILE n 1 108 THR n 1 109 THR n 1 110 ALA n 1 111 THR n 1 112 GLY n 1 113 PHE n 1 114 PHE n 1 115 CYS n 1 116 PHE n 1 117 GLU n 1 118 ASN n 1 119 VAL n 1 120 ALA n 1 121 VAL n 1 122 HIS n 1 123 LEU n 1 124 SER n 1 125 ASN n 1 126 LEU n 1 127 ILE n 1 128 PHE n 1 129 ARG n 1 130 THR n 1 131 PHE n 1 132 ASP n 1 133 LEU n 1 134 PHE n 1 135 LEU n 1 136 VAL n 1 137 ILE n 1 138 HIS n 1 139 HIS n 1 140 LEU n 1 141 PHE n 1 142 ALA n 1 143 PHE n 1 144 LEU n 1 145 GLY n 1 146 PHE n 1 147 LEU n 1 148 GLY n 1 149 CYS n 1 150 LEU n 1 151 VAL n 1 152 ASN n 1 153 LEU n 1 154 GLN n 1 155 ALA n 1 156 GLY n 1 157 HIS n 1 158 TYR n 1 159 LEU n 1 160 ALA n 1 161 MET n 1 162 THR n 1 163 THR n 1 164 LEU n 1 165 LEU n 1 166 LEU n 1 167 GLU n 1 168 MET n 1 169 SER n 1 170 THR n 1 171 PRO n 1 172 PHE n 1 173 THR n 1 174 CYS n 1 175 VAL n 1 176 SER n 1 177 TRP n 1 178 MET n 1 179 LEU n 1 180 LEU n 1 181 LYS n 1 182 ALA n 1 183 GLY n 1 184 TRP n 1 185 SER n 1 186 GLU n 1 187 SER n 1 188 LEU n 1 189 PHE n 1 190 TRP n 1 191 LYS n 1 192 LEU n 1 193 ASN n 1 194 GLN n 1 195 TRP n 1 196 LEU n 1 197 MET n 1 198 ILE n 1 199 HIS n 1 200 MET n 1 201 PHE n 1 202 HIS n 1 203 CYS n 1 204 ARG n 1 205 MET n 1 206 VAL n 1 207 LEU n 1 208 THR n 1 209 TYR n 1 210 HIS n 1 211 MET n 1 212 TRP n 1 213 TRP n 1 214 VAL n 1 215 CYS n 1 216 PHE n 1 217 TRP n 1 218 HIS n 1 219 TRP n 1 220 ASP n 1 221 GLY n 1 222 LEU n 1 223 VAL n 1 224 SER n 1 225 SER n 1 226 LEU n 1 227 TYR n 1 228 LEU n 1 229 PRO n 1 230 HIS n 1 231 LEU n 1 232 THR n 1 233 LEU n 1 234 PHE n 1 235 LEU n 1 236 VAL n 1 237 GLY n 1 238 LEU n 1 239 ALA n 1 240 LEU n 1 241 LEU n 1 242 THR n 1 243 LEU n 1 244 ILE n 1 245 ILE n 1 246 ASN n 1 247 PRO n 1 248 TYR n 1 249 TRP n 1 250 THR n 1 251 HIS n 1 252 LYS n 1 253 LYS n 1 254 THR n 1 255 GLN n 1 256 GLN n 1 257 LEU n 1 258 LEU n 1 259 ASN n 1 260 PRO n 1 261 VAL n 1 262 ASP n 1 263 TRP n 1 264 ASN n 1 265 PHE n 1 266 ALA n 1 267 GLN n 1 268 PRO n 1 269 GLU n 1 270 ALA n 1 271 LYS n 1 272 SER n 1 273 ARG n 1 274 PRO n 1 275 GLU n 1 276 GLY n 1 277 ASN n 1 278 GLY n 1 279 GLN n 1 280 LEU n 1 281 LEU n 1 282 ARG n 1 283 LYS n 1 284 LYS n 1 285 ARG n 1 286 PRO n 1 287 ASP n 1 288 ALA n 1 289 ALA n 1 290 ILE n 1 291 GLU n 1 292 GLY n 1 293 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 293 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CLN8, C8orf61' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4932 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 COA non-polymer . 'COENZYME A' ? 'C21 H36 N7 O16 P3 S' 767.534 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OLA non-polymer . 'OLEIC ACID' ? 'C18 H34 O2' 282.461 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? B . n A 1 2 ASN 2 2 ? ? ? B . n A 1 3 PRO 3 3 ? ? ? B . n A 1 4 ALA 4 4 ? ? ? B . n A 1 5 SER 5 5 ? ? ? B . n A 1 6 ASP 6 6 ? ? ? B . n A 1 7 GLY 7 7 ? ? ? B . n A 1 8 GLY 8 8 ? ? ? B . n A 1 9 THR 9 9 ? ? ? B . n A 1 10 SER 10 10 ? ? ? B . n A 1 11 GLU 11 11 ? ? ? B . n A 1 12 SER 12 12 ? ? ? B . n A 1 13 ILE 13 13 ? ? ? B . n A 1 14 PHE 14 14 14 PHE PHE B . n A 1 15 ASP 15 15 15 ASP ASP B . n A 1 16 LEU 16 16 16 LEU LEU B . n A 1 17 ASP 17 17 17 ASP ASP B . n A 1 18 TYR 18 18 18 TYR TYR B . n A 1 19 ALA 19 19 19 ALA ALA B . n A 1 20 SER 20 20 20 SER SER B . n A 1 21 TRP 21 21 21 TRP TRP B . n A 1 22 GLY 22 22 22 GLY GLY B . n A 1 23 ILE 23 23 23 ILE ILE B . n A 1 24 ARG 24 24 24 ARG ARG B . n A 1 25 SER 25 25 25 SER SER B . n A 1 26 THR 26 26 26 THR THR B . n A 1 27 LEU 27 27 27 LEU LEU B . n A 1 28 MET 28 28 28 MET MET B . n A 1 29 VAL 29 29 29 VAL VAL B . n A 1 30 ALA 30 30 30 ALA ALA B . n A 1 31 GLY 31 31 31 GLY GLY B . n A 1 32 PHE 32 32 32 PHE PHE B . n A 1 33 VAL 33 33 33 VAL VAL B . n A 1 34 PHE 34 34 34 PHE PHE B . n A 1 35 TYR 35 35 35 TYR TYR B . n A 1 36 LEU 36 36 36 LEU LEU B . n A 1 37 GLY 37 37 37 GLY GLY B . n A 1 38 VAL 38 38 38 VAL VAL B . n A 1 39 PHE 39 39 39 PHE PHE B . n A 1 40 VAL 40 40 40 VAL VAL B . n A 1 41 VAL 41 41 41 VAL VAL B . n A 1 42 CYS 42 42 42 CYS CYS B . n A 1 43 HIS 43 43 43 HIS HIS B . n A 1 44 GLN 44 44 44 GLN GLN B . n A 1 45 LEU 45 45 45 LEU LEU B . n A 1 46 SER 46 46 46 SER SER B . n A 1 47 SER 47 47 47 SER SER B . n A 1 48 SER 48 48 48 SER SER B . n A 1 49 LEU 49 49 49 LEU LEU B . n A 1 50 ASN 50 50 50 ASN ASN B . n A 1 51 ALA 51 51 51 ALA ALA B . n A 1 52 THR 52 52 52 THR THR B . n A 1 53 TYR 53 53 53 TYR TYR B . n A 1 54 ARG 54 54 54 ARG ARG B . n A 1 55 SER 55 55 55 SER SER B . n A 1 56 LEU 56 56 56 LEU LEU B . n A 1 57 VAL 57 57 57 VAL VAL B . n A 1 58 ALA 58 58 58 ALA ALA B . n A 1 59 ARG 59 59 59 ARG ARG B . n A 1 60 GLU 60 60 60 GLU GLU B . n A 1 61 LYS 61 61 61 LYS LYS B . n A 1 62 VAL 62 62 62 VAL VAL B . n A 1 63 PHE 63 63 63 PHE PHE B . n A 1 64 TRP 64 64 64 TRP TRP B . n A 1 65 ASP 65 65 65 ASP ASP B . n A 1 66 LEU 66 66 66 LEU LEU B . n A 1 67 ALA 67 67 67 ALA ALA B . n A 1 68 ALA 68 68 68 ALA ALA B . n A 1 69 THR 69 69 69 THR THR B . n A 1 70 ARG 70 70 70 ARG ARG B . n A 1 71 ALA 71 71 71 ALA ALA B . n A 1 72 VAL 72 72 72 VAL VAL B . n A 1 73 PHE 73 73 73 PHE PHE B . n A 1 74 GLY 74 74 74 GLY GLY B . n A 1 75 VAL 75 75 75 VAL VAL B . n A 1 76 GLN 76 76 76 GLN GLN B . n A 1 77 SER 77 77 77 SER SER B . n A 1 78 THR 78 78 78 THR THR B . n A 1 79 ALA 79 79 79 ALA ALA B . n A 1 80 ALA 80 80 80 ALA ALA B . n A 1 81 GLY 81 81 81 GLY GLY B . n A 1 82 LEU 82 82 82 LEU LEU B . n A 1 83 TRP 83 83 83 TRP TRP B . n A 1 84 ALA 84 84 84 ALA ALA B . n A 1 85 LEU 85 85 85 LEU LEU B . n A 1 86 LEU 86 86 86 LEU LEU B . n A 1 87 GLY 87 87 87 GLY GLY B . n A 1 88 ASP 88 88 88 ASP ASP B . n A 1 89 PRO 89 89 89 PRO PRO B . n A 1 90 VAL 90 90 90 VAL VAL B . n A 1 91 LEU 91 91 91 LEU LEU B . n A 1 92 HIS 92 92 92 HIS HIS B . n A 1 93 ALA 93 93 93 ALA ALA B . n A 1 94 ASP 94 94 94 ASP ASP B . n A 1 95 LYS 95 95 95 LYS LYS B . n A 1 96 ALA 96 96 96 ALA ALA B . n A 1 97 ARG 97 97 97 ARG ARG B . n A 1 98 GLY 98 98 98 GLY GLY B . n A 1 99 GLN 99 99 99 GLN GLN B . n A 1 100 GLN 100 100 100 GLN GLN B . n A 1 101 ASN 101 101 101 ASN ASN B . n A 1 102 TRP 102 102 102 TRP TRP B . n A 1 103 CYS 103 103 103 CYS CYS B . n A 1 104 TRP 104 104 104 TRP TRP B . n A 1 105 PHE 105 105 105 PHE PHE B . n A 1 106 HIS 106 106 106 HIS HIS B . n A 1 107 ILE 107 107 107 ILE ILE B . n A 1 108 THR 108 108 108 THR THR B . n A 1 109 THR 109 109 109 THR THR B . n A 1 110 ALA 110 110 110 ALA ALA B . n A 1 111 THR 111 111 111 THR THR B . n A 1 112 GLY 112 112 112 GLY GLY B . n A 1 113 PHE 113 113 113 PHE PHE B . n A 1 114 PHE 114 114 114 PHE PHE B . n A 1 115 CYS 115 115 115 CYS CYS B . n A 1 116 PHE 116 116 116 PHE PHE B . n A 1 117 GLU 117 117 117 GLU GLU B . n A 1 118 ASN 118 118 118 ASN ASN B . n A 1 119 VAL 119 119 119 VAL VAL B . n A 1 120 ALA 120 120 120 ALA ALA B . n A 1 121 VAL 121 121 121 VAL VAL B . n A 1 122 HIS 122 122 122 HIS HIS B . n A 1 123 LEU 123 123 123 LEU LEU B . n A 1 124 SER 124 124 124 SER SER B . n A 1 125 ASN 125 125 125 ASN ASN B . n A 1 126 LEU 126 126 126 LEU LEU B . n A 1 127 ILE 127 127 127 ILE ILE B . n A 1 128 PHE 128 128 128 PHE PHE B . n A 1 129 ARG 129 129 129 ARG ARG B . n A 1 130 THR 130 130 130 THR THR B . n A 1 131 PHE 131 131 131 PHE PHE B . n A 1 132 ASP 132 132 132 ASP ASP B . n A 1 133 LEU 133 133 133 LEU LEU B . n A 1 134 PHE 134 134 134 PHE PHE B . n A 1 135 LEU 135 135 135 LEU LEU B . n A 1 136 VAL 136 136 136 VAL VAL B . n A 1 137 ILE 137 137 137 ILE ILE B . n A 1 138 HIS 138 138 138 HIS HIS B . n A 1 139 HIS 139 139 139 HIS HIS B . n A 1 140 LEU 140 140 140 LEU LEU B . n A 1 141 PHE 141 141 141 PHE PHE B . n A 1 142 ALA 142 142 142 ALA ALA B . n A 1 143 PHE 143 143 143 PHE PHE B . n A 1 144 LEU 144 144 144 LEU LEU B . n A 1 145 GLY 145 145 145 GLY GLY B . n A 1 146 PHE 146 146 146 PHE PHE B . n A 1 147 LEU 147 147 147 LEU LEU B . n A 1 148 GLY 148 148 148 GLY GLY B . n A 1 149 CYS 149 149 149 CYS CYS B . n A 1 150 LEU 150 150 150 LEU LEU B . n A 1 151 VAL 151 151 151 VAL VAL B . n A 1 152 ASN 152 152 152 ASN ASN B . n A 1 153 LEU 153 153 153 LEU LEU B . n A 1 154 GLN 154 154 154 GLN GLN B . n A 1 155 ALA 155 155 155 ALA ALA B . n A 1 156 GLY 156 156 156 GLY GLY B . n A 1 157 HIS 157 157 157 HIS HIS B . n A 1 158 TYR 158 158 158 TYR TYR B . n A 1 159 LEU 159 159 159 LEU LEU B . n A 1 160 ALA 160 160 160 ALA ALA B . n A 1 161 MET 161 161 161 MET MET B . n A 1 162 THR 162 162 162 THR THR B . n A 1 163 THR 163 163 163 THR THR B . n A 1 164 LEU 164 164 164 LEU LEU B . n A 1 165 LEU 165 165 165 LEU LEU B . n A 1 166 LEU 166 166 166 LEU LEU B . n A 1 167 GLU 167 167 167 GLU GLU B . n A 1 168 MET 168 168 168 MET MET B . n A 1 169 SER 169 169 169 SER SER B . n A 1 170 THR 170 170 170 THR THR B . n A 1 171 PRO 171 171 171 PRO PRO B . n A 1 172 PHE 172 172 172 PHE PHE B . n A 1 173 THR 173 173 173 THR THR B . n A 1 174 CYS 174 174 174 CYS CYS B . n A 1 175 VAL 175 175 175 VAL VAL B . n A 1 176 SER 176 176 176 SER SER B . n A 1 177 TRP 177 177 177 TRP TRP B . n A 1 178 MET 178 178 178 MET MET B . n A 1 179 LEU 179 179 179 LEU LEU B . n A 1 180 LEU 180 180 180 LEU LEU B . n A 1 181 LYS 181 181 181 LYS LYS B . n A 1 182 ALA 182 182 182 ALA ALA B . n A 1 183 GLY 183 183 183 GLY GLY B . n A 1 184 TRP 184 184 184 TRP TRP B . n A 1 185 SER 185 185 185 SER SER B . n A 1 186 GLU 186 186 186 GLU GLU B . n A 1 187 SER 187 187 187 SER SER B . n A 1 188 LEU 188 188 188 LEU LEU B . n A 1 189 PHE 189 189 189 PHE PHE B . n A 1 190 TRP 190 190 190 TRP TRP B . n A 1 191 LYS 191 191 191 LYS LYS B . n A 1 192 LEU 192 192 192 LEU LEU B . n A 1 193 ASN 193 193 193 ASN ASN B . n A 1 194 GLN 194 194 194 GLN GLN B . n A 1 195 TRP 195 195 195 TRP TRP B . n A 1 196 LEU 196 196 196 LEU LEU B . n A 1 197 MET 197 197 197 MET MET B . n A 1 198 ILE 198 198 198 ILE ILE B . n A 1 199 HIS 199 199 199 HIS HIS B . n A 1 200 MET 200 200 200 MET MET B . n A 1 201 PHE 201 201 201 PHE PHE B . n A 1 202 HIS 202 202 202 HIS HIS B . n A 1 203 CYS 203 203 203 CYS CYS B . n A 1 204 ARG 204 204 204 ARG ARG B . n A 1 205 MET 205 205 205 MET MET B . n A 1 206 VAL 206 206 206 VAL VAL B . n A 1 207 LEU 207 207 207 LEU LEU B . n A 1 208 THR 208 208 208 THR THR B . n A 1 209 TYR 209 209 209 TYR TYR B . n A 1 210 HIS 210 210 210 HIS HIS B . n A 1 211 MET 211 211 211 MET MET B . n A 1 212 TRP 212 212 212 TRP TRP B . n A 1 213 TRP 213 213 213 TRP TRP B . n A 1 214 VAL 214 214 214 VAL VAL B . n A 1 215 CYS 215 215 215 CYS CYS B . n A 1 216 PHE 216 216 216 PHE PHE B . n A 1 217 TRP 217 217 217 TRP TRP B . n A 1 218 HIS 218 218 218 HIS HIS B . n A 1 219 TRP 219 219 219 TRP TRP B . n A 1 220 ASP 220 220 220 ASP ASP B . n A 1 221 GLY 221 221 221 GLY GLY B . n A 1 222 LEU 222 222 222 LEU LEU B . n A 1 223 VAL 223 223 223 VAL VAL B . n A 1 224 SER 224 224 224 SER SER B . n A 1 225 SER 225 225 225 SER SER B . n A 1 226 LEU 226 226 226 LEU LEU B . n A 1 227 TYR 227 227 227 TYR TYR B . n A 1 228 LEU 228 228 228 LEU LEU B . n A 1 229 PRO 229 229 229 PRO PRO B . n A 1 230 HIS 230 230 230 HIS HIS B . n A 1 231 LEU 231 231 231 LEU LEU B . n A 1 232 THR 232 232 232 THR THR B . n A 1 233 LEU 233 233 233 LEU LEU B . n A 1 234 PHE 234 234 234 PHE PHE B . n A 1 235 LEU 235 235 235 LEU LEU B . n A 1 236 VAL 236 236 236 VAL VAL B . n A 1 237 GLY 237 237 237 GLY GLY B . n A 1 238 LEU 238 238 238 LEU LEU B . n A 1 239 ALA 239 239 239 ALA ALA B . n A 1 240 LEU 240 240 240 LEU LEU B . n A 1 241 LEU 241 241 241 LEU LEU B . n A 1 242 THR 242 242 242 THR THR B . n A 1 243 LEU 243 243 243 LEU LEU B . n A 1 244 ILE 244 244 244 ILE ILE B . n A 1 245 ILE 245 245 245 ILE ILE B . n A 1 246 ASN 246 246 246 ASN ASN B . n A 1 247 PRO 247 247 247 PRO PRO B . n A 1 248 TYR 248 248 248 TYR TYR B . n A 1 249 TRP 249 249 249 TRP TRP B . n A 1 250 THR 250 250 250 THR THR B . n A 1 251 HIS 251 251 251 HIS HIS B . n A 1 252 LYS 252 252 252 LYS LYS B . n A 1 253 LYS 253 253 253 LYS LYS B . n A 1 254 THR 254 254 254 THR THR B . n A 1 255 GLN 255 255 255 GLN GLN B . n A 1 256 GLN 256 256 256 GLN GLN B . n A 1 257 LEU 257 257 257 LEU LEU B . n A 1 258 LEU 258 258 258 LEU LEU B . n A 1 259 ASN 259 259 259 ASN ASN B . n A 1 260 PRO 260 260 260 PRO PRO B . n A 1 261 VAL 261 261 ? ? ? B . n A 1 262 ASP 262 262 ? ? ? B . n A 1 263 TRP 263 263 ? ? ? B . n A 1 264 ASN 264 264 ? ? ? B . n A 1 265 PHE 265 265 ? ? ? B . n A 1 266 ALA 266 266 ? ? ? B . n A 1 267 GLN 267 267 ? ? ? B . n A 1 268 PRO 268 268 ? ? ? B . n A 1 269 GLU 269 269 ? ? ? B . n A 1 270 ALA 270 270 ? ? ? B . n A 1 271 LYS 271 271 ? ? ? B . n A 1 272 SER 272 272 ? ? ? B . n A 1 273 ARG 273 273 ? ? ? B . n A 1 274 PRO 274 274 ? ? ? B . n A 1 275 GLU 275 275 ? ? ? B . n A 1 276 GLY 276 276 ? ? ? B . n A 1 277 ASN 277 277 ? ? ? B . n A 1 278 GLY 278 278 ? ? ? B . n A 1 279 GLN 279 279 ? ? ? B . n A 1 280 LEU 280 280 ? ? ? B . n A 1 281 LEU 281 281 ? ? ? B . n A 1 282 ARG 282 282 ? ? ? B . n A 1 283 LYS 283 283 ? ? ? B . n A 1 284 LYS 284 284 ? ? ? B . n A 1 285 ARG 285 285 ? ? ? B . n A 1 286 PRO 286 286 ? ? ? B . n A 1 287 ASP 287 287 ? ? ? B . n A 1 288 ALA 288 288 ? ? ? B . n A 1 289 ALA 289 289 ? ? ? B . n A 1 290 ILE 290 290 ? ? ? B . n A 1 291 GLU 291 291 ? ? ? B . n A 1 292 GLY 292 292 ? ? ? B . n A 1 293 ARG 293 293 ? ? ? B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 COA ? ? COA ? ? 'SUBJECT OF INVESTIGATION' ? 2 OLA ? ? OLA ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA 1 301 1 COA COA B . C 3 OLA 1 302 1 OLA OLA B . D 4 HOH 1 401 15 HOH HOH B . D 4 HOH 2 402 3 HOH HOH B . D 4 HOH 3 403 16 HOH HOH B . D 4 HOH 4 404 2 HOH HOH B . D 4 HOH 5 405 9 HOH HOH B . D 4 HOH 6 406 14 HOH HOH B . D 4 HOH 7 407 18 HOH HOH B . D 4 HOH 8 408 19 HOH HOH B . D 4 HOH 9 409 12 HOH HOH B . D 4 HOH 10 410 10 HOH HOH B . D 4 HOH 11 411 1 HOH HOH B . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9TKA _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9TKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9TKA _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 83.92 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9TKA _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.7 _refine.ls_d_res_low 262.44 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1923431 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work 0.7489 _refine.pdbx_average_fsc_free 0.7261 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0023 ? 2171 ? s_bond_nonh_d 0.0118 ? ? 'ELECTRON MICROSCOPY' ? 0.9602 ? 2966 ? s_angle_nonh_deg 1.7837 ? ? 'ELECTRON MICROSCOPY' ? 5.5085 ? 248 ? s_dihedral_angle_1_deg 5 ? ? 'ELECTRON MICROSCOPY' ? 1.9144 ? 11 ? s_dihedral_angle_2_deg 5 ? ? 'ELECTRON MICROSCOPY' ? 11.8424 ? 321 ? s_dihedral_angle_3_deg 10 ? ? 'ELECTRON MICROSCOPY' ? 13.9834 ? 90 ? s_dihedral_angle_6_deg 10 ? ? 'ELECTRON MICROSCOPY' ? 0.0736 ? 328 ? s_chiral_restr 0.1324 ? ? 'ELECTRON MICROSCOPY' ? 0.0034 ? 1676 ? s_planes 0.02 ? ? 'ELECTRON MICROSCOPY' ? 0.1792 ? 958 ? s_nbd 0.2 ? ? 'ELECTRON MICROSCOPY' ? 0.2694 ? 1358 ? s_nbtor 0.2 ? ? 'ELECTRON MICROSCOPY' ? 0.0841 ? 46 ? s_hbond_nbd 0.2 ? ? 'ELECTRON MICROSCOPY' ? 0.234 ? 29 ? s_symmetry_nbd 0.2 ? ? 'ELECTRON MICROSCOPY' ? 0.0134 ? 1 ? s_symmetry_hbond_nbd 0.2 ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'ELECTRON MICROSCOPY' 2.7 2.719 . 41563 . . . . . . . . . . . . . . . . . . . . . 0.3477 0.3606 . 'ELECTRON MICROSCOPY' 2.72 2.748 . 57945 . . . . . . . . . . . . . . . . . . . . . 0.3864 0.3875 . 'ELECTRON MICROSCOPY' 2.748 2.777 . 56161 . . . . . . . . . . . . . . . . . . . . . 0.435 0.4086 . 'ELECTRON MICROSCOPY' 2.777 2.807 . 55363 . . . . . . . . . . . . . . . . . . . . . 0.4758 0.4245 . 'ELECTRON MICROSCOPY' 2.807 2.837 . 54273 . . . . . . . . . . . . . . . . . . . . . 0.5071 0.4437 . 'ELECTRON MICROSCOPY' 2.837 2.868 . 53173 . . . . . . . . . . . . . . . . . . . . . 0.5305 0.4616 . 'ELECTRON MICROSCOPY' 2.868 2.9 . 51885 . . . . . . . . . . . . . . . . . . . . . 0.5554 0.4789 . 'ELECTRON MICROSCOPY' 2.9 2.932 . 51295 . . . . . . . . . . . . . . . . . . . . . 0.5779 0.5034 . 'ELECTRON MICROSCOPY' 2.932 2.965 . 49845 . . . . . . . . . . . . . . . . . . . . . 0.6027 0.5322 . 'ELECTRON MICROSCOPY' 2.965 2.999 . 48637 . . . . . . . . . . . . . . . . . . . . . 0.6322 0.5743 . 'ELECTRON MICROSCOPY' 2.999 3.034 . 47239 . . . . . . . . . . . . . . . . . . . . . 0.6639 0.6177 . 'ELECTRON MICROSCOPY' 3.034 3.069 . 46569 . . . . . . . . . . . . . . . . . . . . . 0.6861 0.6514 . 'ELECTRON MICROSCOPY' 3.07 3.106 . 45769 . . . . . . . . . . . . . . . . . . . . . 0.6991 0.6732 . 'ELECTRON MICROSCOPY' 3.106 3.143 . 44067 . . . . . . . . . . . . . . . . . . . . . 0.7086 0.6898 . 'ELECTRON MICROSCOPY' 3.143 3.181 . 43273 . . . . . . . . . . . . . . . . . . . . . 0.7177 0.7061 . 'ELECTRON MICROSCOPY' 3.181 3.22 . 42333 . . . . . . . . . . . . . . . . . . . . . 0.7316 0.7217 . 'ELECTRON MICROSCOPY' 3.22 3.26 . 41593 . . . . . . . . . . . . . . . . . . . . . 0.7477 0.7365 . 'ELECTRON MICROSCOPY' 3.26 3.301 . 40015 . . . . . . . . . . . . . . . . . . . . . 0.7673 0.7556 . 'ELECTRON MICROSCOPY' 3.301 3.343 . 39189 . . . . . . . . . . . . . . . . . . . . . 0.7883 0.7712 . 'ELECTRON MICROSCOPY' 3.343 3.386 . 37861 . . . . . . . . . . . . . . . . . . . . . 0.804 0.7846 . 'ELECTRON MICROSCOPY' 3.386 3.43 . 37455 . . . . . . . . . . . . . . . . . . . . . 0.8135 0.7936 . 'ELECTRON MICROSCOPY' 3.431 3.476 . 36373 . . . . . . . . . . . . . . . . . . . . . 0.8238 0.804 . 'ELECTRON MICROSCOPY' 3.476 3.522 . 35013 . . . . . . . . . . . . . . . . . . . . . 0.8322 0.8168 . 'ELECTRON MICROSCOPY' 3.523 3.57 . 34849 . . . . . . . . . . . . . . . . . . . . . 0.8456 0.8298 . 'ELECTRON MICROSCOPY' 3.571 3.62 . 33343 . . . . . . . . . . . . . . . . . . . . . 0.8577 0.8422 . 'ELECTRON MICROSCOPY' 3.62 3.67 . 32865 . . . . . . . . . . . . . . . . . . . . . 0.8709 0.8514 . 'ELECTRON MICROSCOPY' 3.671 3.722 . 31285 . . . . . . . . . . . . . . . . . . . . . 0.8806 0.8612 . 'ELECTRON MICROSCOPY' 3.723 3.775 . 30603 . . . . . . . . . . . . . . . . . . . . . 0.8888 0.8714 . 'ELECTRON MICROSCOPY' 3.776 3.831 . 30313 . . . . . . . . . . . . . . . . . . . . . 0.8929 0.8781 . 'ELECTRON MICROSCOPY' 3.831 3.888 . 28741 . . . . . . . . . . . . . . . . . . . . . 0.8949 0.8825 . 'ELECTRON MICROSCOPY' 3.888 3.946 . 28455 . . . . . . . . . . . . . . . . . . . . . 0.9 0.8858 . 'ELECTRON MICROSCOPY' 3.947 4.006 . 27157 . . . . . . . . . . . . . . . . . . . . . 0.9049 0.8905 . 'ELECTRON MICROSCOPY' 4.007 4.068 . 27045 . . . . . . . . . . . . . . . . . . . . . 0.9105 0.895 . 'ELECTRON MICROSCOPY' 4.069 4.133 . 25777 . . . . . . . . . . . . . . . . . . . . . 0.9084 0.8947 . 'ELECTRON MICROSCOPY' 4.134 4.199 . 24435 . . . . . . . . . . . . . . . . . . . . . 0.9079 0.896 . 'ELECTRON MICROSCOPY' 4.199 4.266 . 24277 . . . . . . . . . . . . . . . . . . . . . 0.9069 0.8961 . 'ELECTRON MICROSCOPY' 4.267 4.337 . 23317 . . . . . . . . . . . . . . . . . . . . . 0.9102 0.8995 . 'ELECTRON MICROSCOPY' 4.338 4.41 . 22851 . . . . . . . . . . . . . . . . . . . . . 0.9117 0.9007 . 'ELECTRON MICROSCOPY' 4.411 4.485 . 21745 . . . . . . . . . . . . . . . . . . . . . 0.9115 0.9005 . 'ELECTRON MICROSCOPY' 4.486 4.564 . 21033 . . . . . . . . . . . . . . . . . . . . . 0.9113 0.9028 . 'ELECTRON MICROSCOPY' 4.564 4.644 . 20713 . . . . . . . . . . . . . . . . . . . . . 0.9158 0.9077 . 'ELECTRON MICROSCOPY' 4.645 4.728 . 19647 . . . . . . . . . . . . . . . . . . . . . 0.9195 0.9118 . 'ELECTRON MICROSCOPY' 4.729 4.815 . 18841 . . . . . . . . . . . . . . . . . . . . . 0.9209 0.9138 . 'ELECTRON MICROSCOPY' 4.816 4.904 . 18217 . . . . . . . . . . . . . . . . . . . . . 0.9192 0.9133 . 'ELECTRON MICROSCOPY' 4.906 4.998 . 17727 . . . . . . . . . . . . . . . . . . . . . 0.9204 0.916 . 'ELECTRON MICROSCOPY' 4.999 5.095 . 17125 . . . . . . . . . . . . . . . . . . . . . 0.9222 0.9185 . 'ELECTRON MICROSCOPY' 5.097 5.195 . 16125 . . . . . . . . . . . . . . . . . . . . . 0.9214 0.9173 . 'ELECTRON MICROSCOPY' 5.197 5.301 . 15871 . . . . . . . . . . . . . . . . . . . . . 0.9174 0.9114 . 'ELECTRON MICROSCOPY' 5.302 5.41 . 15225 . . . . . . . . . . . . . . . . . . . . . 0.9068 0.8999 . 'ELECTRON MICROSCOPY' 5.411 5.524 . 14533 . . . . . . . . . . . . . . . . . . . . . 0.8894 0.8834 . 'ELECTRON MICROSCOPY' 5.525 5.643 . 13753 . . . . . . . . . . . . . . . . . . . . . 0.8735 0.8674 . 'ELECTRON MICROSCOPY' 5.644 5.765 . 13059 . . . . . . . . . . . . . . . . . . . . . 0.8657 0.8616 . 'ELECTRON MICROSCOPY' 5.768 5.896 . 12973 . . . . . . . . . . . . . . . . . . . . . 0.8622 0.8604 . 'ELECTRON MICROSCOPY' 5.899 6.032 . 12021 . . . . . . . . . . . . . . . . . . . . . 0.8641 0.8626 . 'ELECTRON MICROSCOPY' 6.034 6.172 . 11731 . . . . . . . . . . . . . . . . . . . . . 0.8608 0.8606 . 'ELECTRON MICROSCOPY' 6.175 6.322 . 10981 . . . . . . . . . . . . . . . . . . . . . 0.8571 0.8582 . 'ELECTRON MICROSCOPY' 6.324 6.479 . 10725 . . . . . . . . . . . . . . . . . . . . . 0.8515 0.8536 . 'ELECTRON MICROSCOPY' 6.48 6.642 . 10117 . . . . . . . . . . . . . . . . . . . . . 0.8472 0.8512 . 'ELECTRON MICROSCOPY' 6.645 6.815 . 9375 . . . . . . . . . . . . . . . . . . . . . 0.8545 0.8586 . 'ELECTRON MICROSCOPY' 6.817 6.994 . 9133 . . . . . . . . . . . . . . . . . . . . . 0.8738 0.8774 . 'ELECTRON MICROSCOPY' 6.999 7.188 . 8577 . . . . . . . . . . . . . . . . . . . . . 0.8953 0.897 . 'ELECTRON MICROSCOPY' 7.191 7.39 . 8227 . . . . . . . . . . . . . . . . . . . . . 0.9042 0.9041 . 'ELECTRON MICROSCOPY' 7.393 7.601 . 7597 . . . . . . . . . . . . . . . . . . . . . 0.9028 0.9021 . 'ELECTRON MICROSCOPY' 7.608 7.831 . 7377 . . . . . . . . . . . . . . . . . . . . . 0.896 0.8967 . 'ELECTRON MICROSCOPY' 7.835 8.072 . 6901 . . . . . . . . . . . . . . . . . . . . . 0.8884 0.8922 . 'ELECTRON MICROSCOPY' 8.076 8.328 . 6303 . . . . . . . . . . . . . . . . . . . . . 0.8889 0.8922 . 'ELECTRON MICROSCOPY' 8.332 8.601 . 6073 . . . . . . . . . . . . . . . . . . . . . 0.8894 0.8909 . 'ELECTRON MICROSCOPY' 8.606 8.887 . 5613 . . . . . . . . . . . . . . . . . . . . . 0.8959 0.8958 . 'ELECTRON MICROSCOPY' 8.898 9.204 . 5275 . . . . . . . . . . . . . . . . . . . . . 0.9094 0.9093 . 'ELECTRON MICROSCOPY' 9.21 9.539 . 4981 . . . . . . . . . . . . . . . . . . . . . 0.9175 0.9175 . 'ELECTRON MICROSCOPY' 9.545 9.891 . 4533 . . . . . . . . . . . . . . . . . . . . . 0.9242 0.9242 . 'ELECTRON MICROSCOPY' 9.905 10.286 . 4303 . . . . . . . . . . . . . . . . . . . . . 0.9225 0.9231 . 'ELECTRON MICROSCOPY' 10.294 10.705 . 4017 . . . . . . . . . . . . . . . . . . . . . 0.9265 0.9273 . 'ELECTRON MICROSCOPY' 10.714 11.16 . 3565 . . . . . . . . . . . . . . . . . . . . . 0.9376 0.9385 . 'ELECTRON MICROSCOPY' 11.17 11.655 . 3301 . . . . . . . . . . . . . . . . . . . . . 0.9495 0.95 . 'ELECTRON MICROSCOPY' 11.667 12.183 . 2991 . . . . . . . . . . . . . . . . . . . . . 0.9557 0.9563 . 'ELECTRON MICROSCOPY' 12.21 12.791 . 2857 . . . . . . . . . . . . . . . . . . . . . 0.9545 0.9555 . 'ELECTRON MICROSCOPY' 12.806 13.445 . 2517 . . . . . . . . . . . . . . . . . . . . . 0.953 0.9546 . 'ELECTRON MICROSCOPY' 13.481 14.15 . 2179 . . . . . . . . . . . . . . . . . . . . . 0.9521 0.9543 . 'ELECTRON MICROSCOPY' 14.191 14.978 . 2085 . . . . . . . . . . . . . . . . . . . . . 0.9496 0.9518 . 'ELECTRON MICROSCOPY' 15.003 15.884 . 1861 . . . . . . . . . . . . . . . . . . . . . 0.9526 0.9543 . 'ELECTRON MICROSCOPY' 15.913 16.905 . 1669 . . . . . . . . . . . . . . . . . . . . . 0.9601 0.9612 . 'ELECTRON MICROSCOPY' 17.011 18.067 . 1311 . . . . . . . . . . . . . . . . . . . . . 0.966 0.9666 . 'ELECTRON MICROSCOPY' 18.11 19.347 . 1249 . . . . . . . . . . . . . . . . . . . . . 0.9653 0.9651 . 'ELECTRON MICROSCOPY' 19.453 20.945 . 1089 . . . . . . . . . . . . . . . . . . . . . 0.9581 0.9567 . 'ELECTRON MICROSCOPY' 21.08 22.756 . 907 . . . . . . . . . . . . . . . . . . . . . 0.9405 0.9384 . 'ELECTRON MICROSCOPY' 22.842 24.688 . 729 . . . . . . . . . . . . . . . . . . . . . 0.9361 0.934 . 'ELECTRON MICROSCOPY' 25.023 27.511 . 625 . . . . . . . . . . . . . . . . . . . . . 0.9633 0.9622 . 'ELECTRON MICROSCOPY' 27.664 30.716 . 571 . . . . . . . . . . . . . . . . . . . . . 0.9701 0.9694 . 'ELECTRON MICROSCOPY' 30.929 34.761 . 381 . . . . . . . . . . . . . . . . . . . . . 0.9624 0.9619 . 'ELECTRON MICROSCOPY' 35.07 40.022 . 301 . . . . . . . . . . . . . . . . . . . . . 0.9585 0.9584 . 'ELECTRON MICROSCOPY' 40.495 46.393 . 225 . . . . . . . . . . . . . . . . . . . . . 0.9671 0.9673 . 'ELECTRON MICROSCOPY' 47.915 57.269 . 175 . . . . . . . . . . . . . . . . . . . . . 0.985 0.9853 . 'ELECTRON MICROSCOPY' 58.683 72.788 . 105 . . . . . . . . . . . . . . . . . . . . . 0.9965 0.9966 . 'ELECTRON MICROSCOPY' 75.76 92.787 . 49 . . . . . . . . . . . . . . . . . . . . . 0.9992 0.9992 . 'ELECTRON MICROSCOPY' 107.141 262.44 . 40 . . . . . . . . . . . . . . . . . . . . . 0.9744 0.9744 . # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.vector[2] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[3] _struct_ncs_oper.details 1 given 1 0 0 0 0 1 0 0 0 0 1 0 ? 2 generate -1 0 0 262.44 0 -1 0 262.44 0 0 1 0 ? # _struct.entry_id 9TKA _struct.title 'Structure of human CLN8 in the presence of oleate' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9TKA _struct_keywords.text ;Bis(monoacylglycero)phosphate, Batten disease, Glycerophosphoglycerol, Lysophosphatidylglycerol, Acyltransferase, Neurodegeneration, MEMBRANE PROTEIN ; _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CLN8_HUMAN _struct_ref.pdbx_db_accession Q9UBY8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNPASDGGTSESIFDLDYASWGIRSTLMVAGFVFYLGVFVVCHQLSSSLNATYRSLVAREKVFWDLAATRAVFGVQSTAA GLWALLGDPVLHADKARGQQNWCWFHITTATGFFCFENVAVHLSNLIFRTFDLFLVIHHLFAFLGFLGCLVNLQAGHYLA MTTLLLEMSTPFTCVSWMLLKAGWSESLFWKLNQWLMIHMFHCRMVLTYHMWWVCFWHWDGLVSSLYLPHLTLFLVGLAL LTLIINPYWTHKKTQQLLNPVDWNFAQPEAKSRPEGNGQLLRKKRP ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9TKA _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 286 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UBY8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 286 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 286 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9TKA ASP B 287 ? UNP Q9UBY8 ? ? 'expression tag' 287 1 1 9TKA ALA B 288 ? UNP Q9UBY8 ? ? 'expression tag' 288 2 1 9TKA ALA B 289 ? UNP Q9UBY8 ? ? 'expression tag' 289 3 1 9TKA ILE B 290 ? UNP Q9UBY8 ? ? 'expression tag' 290 4 1 9TKA GLU B 291 ? UNP Q9UBY8 ? ? 'expression tag' 291 5 1 9TKA GLY B 292 ? UNP Q9UBY8 ? ? 'expression tag' 292 6 1 9TKA ARG B 293 ? UNP Q9UBY8 ? ? 'expression tag' 293 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 2 'point symmetry operation' ? ? -1.0 0.0 0.0 262.44000 0.0 -1.0 0.0 262.44000 0.0 0.0 1.0 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 20 ? ASN A 50 ? SER B 20 ASN B 50 1 ? 31 HELX_P HELX_P2 AA2 ASN A 50 ? LEU A 56 ? ASN B 50 LEU B 56 1 ? 7 HELX_P HELX_P3 AA3 VAL A 57 ? LEU A 86 ? VAL B 57 LEU B 86 1 ? 30 HELX_P HELX_P4 AA4 ASP A 88 ? ASP A 94 ? ASP B 88 ASP B 94 1 ? 7 HELX_P HELX_P5 AA5 GLN A 100 ? ARG A 129 ? GLN B 100 ARG B 129 1 ? 30 HELX_P HELX_P6 AA6 ASP A 132 ? ASN A 152 ? ASP B 132 ASN B 152 1 ? 21 HELX_P HELX_P7 AA7 HIS A 157 ? LEU A 166 ? HIS B 157 LEU B 166 1 ? 10 HELX_P HELX_P8 AA8 MET A 168 ? GLY A 183 ? MET B 168 GLY B 183 1 ? 16 HELX_P HELX_P9 AA9 SER A 187 ? HIS A 218 ? SER B 187 HIS B 218 1 ? 32 HELX_P HELX_P10 AB1 HIS A 218 ? LEU A 226 ? HIS B 218 LEU B 226 1 ? 9 HELX_P HELX_P11 AB2 TYR A 227 ? ILE A 244 ? TYR B 227 ILE B 244 1 ? 18 HELX_P HELX_P12 AB3 ILE A 244 ? ASN A 259 ? ILE B 244 ASN B 259 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 9TKA _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9TKA _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9TKA _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 247856 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'CLN8 dimer' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9TKA _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9TKA _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9TKA _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 1 ? A MET 1 2 1 Y 1 B ASN 2 ? A ASN 2 3 1 Y 1 B PRO 3 ? A PRO 3 4 1 Y 1 B ALA 4 ? A ALA 4 5 1 Y 1 B SER 5 ? A SER 5 6 1 Y 1 B ASP 6 ? A ASP 6 7 1 Y 1 B GLY 7 ? A GLY 7 8 1 Y 1 B GLY 8 ? A GLY 8 9 1 Y 1 B THR 9 ? A THR 9 10 1 Y 1 B SER 10 ? A SER 10 11 1 Y 1 B GLU 11 ? A GLU 11 12 1 Y 1 B SER 12 ? A SER 12 13 1 Y 1 B ILE 13 ? A ILE 13 14 1 Y 1 B VAL 261 ? A VAL 261 15 1 Y 1 B ASP 262 ? A ASP 262 16 1 Y 1 B TRP 263 ? A TRP 263 17 1 Y 1 B ASN 264 ? A ASN 264 18 1 Y 1 B PHE 265 ? A PHE 265 19 1 Y 1 B ALA 266 ? A ALA 266 20 1 Y 1 B GLN 267 ? A GLN 267 21 1 Y 1 B PRO 268 ? A PRO 268 22 1 Y 1 B GLU 269 ? A GLU 269 23 1 Y 1 B ALA 270 ? A ALA 270 24 1 Y 1 B LYS 271 ? A LYS 271 25 1 Y 1 B SER 272 ? A SER 272 26 1 Y 1 B ARG 273 ? A ARG 273 27 1 Y 1 B PRO 274 ? A PRO 274 28 1 Y 1 B GLU 275 ? A GLU 275 29 1 Y 1 B GLY 276 ? A GLY 276 30 1 Y 1 B ASN 277 ? A ASN 277 31 1 Y 1 B GLY 278 ? A GLY 278 32 1 Y 1 B GLN 279 ? A GLN 279 33 1 Y 1 B LEU 280 ? A LEU 280 34 1 Y 1 B LEU 281 ? A LEU 281 35 1 Y 1 B ARG 282 ? A ARG 282 36 1 Y 1 B LYS 283 ? A LYS 283 37 1 Y 1 B LYS 284 ? A LYS 284 38 1 Y 1 B ARG 285 ? A ARG 285 39 1 Y 1 B PRO 286 ? A PRO 286 40 1 Y 1 B ASP 287 ? A ASP 287 41 1 Y 1 B ALA 288 ? A ALA 288 42 1 Y 1 B ALA 289 ? A ALA 289 43 1 Y 1 B ILE 290 ? A ILE 290 44 1 Y 1 B GLU 291 ? A GLU 291 45 1 Y 1 B GLY 292 ? A GLY 292 46 1 Y 1 B ARG 293 ? A ARG 293 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 COA N1A N Y N 74 COA C2A C Y N 75 COA N3A N Y N 76 COA C4A C Y N 77 COA C5A C Y N 78 COA C6A C Y N 79 COA N6A N N N 80 COA N7A N Y N 81 COA C8A C Y N 82 COA N9A N Y N 83 COA C1B C N R 84 COA C2B C N R 85 COA O2B O N N 86 COA C3B C N S 87 COA O3B O N N 88 COA P3B P N N 89 COA O7A O N N 90 COA O8A O N N 91 COA O9A O N N 92 COA C4B C N R 93 COA O4B O N N 94 COA C5B C N N 95 COA O5B O N N 96 COA P1A P N S 97 COA O1A O N N 98 COA O2A O N N 99 COA O3A O N N 100 COA P2A P N S 101 COA O4A O N N 102 COA O5A O N N 103 COA O6A O N N 104 COA CBP C N N 105 COA CCP C N N 106 COA CDP C N N 107 COA CEP C N N 108 COA CAP C N R 109 COA OAP O N N 110 COA C9P C N N 111 COA O9P O N N 112 COA N8P N N N 113 COA C7P C N N 114 COA C6P C N N 115 COA C5P C N N 116 COA O5P O N N 117 COA N4P N N N 118 COA C3P C N N 119 COA C2P C N N 120 COA S1P S N N 121 COA H2A H N N 122 COA H61A H N N 123 COA H62A H N N 124 COA H8A H N N 125 COA H1B H N N 126 COA H2B H N N 127 COA HO2A H N N 128 COA H3B H N N 129 COA HOA8 H N N 130 COA HOA9 H N N 131 COA H4B H N N 132 COA H51A H N N 133 COA H52A H N N 134 COA HOA2 H N N 135 COA HOA5 H N N 136 COA H121 H N N 137 COA H122 H N N 138 COA H131 H N N 139 COA H132 H N N 140 COA H133 H N N 141 COA H141 H N N 142 COA H142 H N N 143 COA H143 H N N 144 COA H10 H N N 145 COA HO1 H N N 146 COA HN8 H N N 147 COA H71 H N N 148 COA H72 H N N 149 COA H61 H N N 150 COA H62 H N N 151 COA HN4 H N N 152 COA H31 H N N 153 COA H32 H N N 154 COA H21 H N N 155 COA H22 H N N 156 COA HS1 H N N 157 CYS N N N N 158 CYS CA C N R 159 CYS C C N N 160 CYS O O N N 161 CYS CB C N N 162 CYS SG S N N 163 CYS OXT O N N 164 CYS H H N N 165 CYS H2 H N N 166 CYS HA H N N 167 CYS HB2 H N N 168 CYS HB3 H N N 169 CYS HG H N N 170 CYS HXT H N N 171 GLN N N N N 172 GLN CA C N S 173 GLN C C N N 174 GLN O O N N 175 GLN CB C N N 176 GLN CG C N N 177 GLN CD C N N 178 GLN OE1 O N N 179 GLN NE2 N N N 180 GLN OXT O N N 181 GLN H H N N 182 GLN H2 H N N 183 GLN HA H N N 184 GLN HB2 H N N 185 GLN HB3 H N N 186 GLN HG2 H N N 187 GLN HG3 H N N 188 GLN HE21 H N N 189 GLN HE22 H N N 190 GLN HXT H N N 191 GLU N N N N 192 GLU CA C N S 193 GLU C C N N 194 GLU O O N N 195 GLU CB C N N 196 GLU CG C N N 197 GLU CD C N N 198 GLU OE1 O N N 199 GLU OE2 O N N 200 GLU OXT O N N 201 GLU H H N N 202 GLU H2 H N N 203 GLU HA H N N 204 GLU HB2 H N N 205 GLU HB3 H N N 206 GLU HG2 H N N 207 GLU HG3 H N N 208 GLU HE2 H N N 209 GLU HXT H N N 210 GLY N N N N 211 GLY CA C N N 212 GLY C C N N 213 GLY O O N N 214 GLY OXT O N N 215 GLY H H N N 216 GLY H2 H N N 217 GLY HA2 H N N 218 GLY HA3 H N N 219 GLY HXT H N N 220 HIS N N N N 221 HIS CA C N S 222 HIS C C N N 223 HIS O O N N 224 HIS CB C N N 225 HIS CG C Y N 226 HIS ND1 N Y N 227 HIS CD2 C Y N 228 HIS CE1 C Y N 229 HIS NE2 N Y N 230 HIS OXT O N N 231 HIS H H N N 232 HIS H2 H N N 233 HIS HA H N N 234 HIS HB2 H N N 235 HIS HB3 H N N 236 HIS HD1 H N N 237 HIS HD2 H N N 238 HIS HE1 H N N 239 HIS HE2 H N N 240 HIS HXT H N N 241 HOH O O N N 242 HOH H1 H N N 243 HOH H2 H N N 244 ILE N N N N 245 ILE CA C N S 246 ILE C C N N 247 ILE O O N N 248 ILE CB C N S 249 ILE CG1 C N N 250 ILE CG2 C N N 251 ILE CD1 C N N 252 ILE OXT O N N 253 ILE H H N N 254 ILE H2 H N N 255 ILE HA H N N 256 ILE HB H N N 257 ILE HG12 H N N 258 ILE HG13 H N N 259 ILE HG21 H N N 260 ILE HG22 H N N 261 ILE HG23 H N N 262 ILE HD11 H N N 263 ILE HD12 H N N 264 ILE HD13 H N N 265 ILE HXT H N N 266 LEU N N N N 267 LEU CA C N S 268 LEU C C N N 269 LEU O O N N 270 LEU CB C N N 271 LEU CG C N N 272 LEU CD1 C N N 273 LEU CD2 C N N 274 LEU OXT O N N 275 LEU H H N N 276 LEU H2 H N N 277 LEU HA H N N 278 LEU HB2 H N N 279 LEU HB3 H N N 280 LEU HG H N N 281 LEU HD11 H N N 282 LEU HD12 H N N 283 LEU HD13 H N N 284 LEU HD21 H N N 285 LEU HD22 H N N 286 LEU HD23 H N N 287 LEU HXT H N N 288 LYS N N N N 289 LYS CA C N S 290 LYS C C N N 291 LYS O O N N 292 LYS CB C N N 293 LYS CG C N N 294 LYS CD C N N 295 LYS CE C N N 296 LYS NZ N N N 297 LYS OXT O N N 298 LYS H H N N 299 LYS H2 H N N 300 LYS HA H N N 301 LYS HB2 H N N 302 LYS HB3 H N N 303 LYS HG2 H N N 304 LYS HG3 H N N 305 LYS HD2 H N N 306 LYS HD3 H N N 307 LYS HE2 H N N 308 LYS HE3 H N N 309 LYS HZ1 H N N 310 LYS HZ2 H N N 311 LYS HZ3 H N N 312 LYS HXT H N N 313 MET N N N N 314 MET CA C N S 315 MET C C N N 316 MET O O N N 317 MET CB C N N 318 MET CG C N N 319 MET SD S N N 320 MET CE C N N 321 MET OXT O N N 322 MET H H N N 323 MET H2 H N N 324 MET HA H N N 325 MET HB2 H N N 326 MET HB3 H N N 327 MET HG2 H N N 328 MET HG3 H N N 329 MET HE1 H N N 330 MET HE2 H N N 331 MET HE3 H N N 332 MET HXT H N N 333 OLA C1 C N N 334 OLA O1 O N N 335 OLA O2 O N N 336 OLA C2 C N N 337 OLA C3 C N N 338 OLA C4 C N N 339 OLA C5 C N N 340 OLA C6 C N N 341 OLA C7 C N N 342 OLA C8 C N N 343 OLA C9 C N N 344 OLA C10 C N N 345 OLA C11 C N N 346 OLA C12 C N N 347 OLA C13 C N N 348 OLA C14 C N N 349 OLA C15 C N N 350 OLA C16 C N N 351 OLA C17 C N N 352 OLA C18 C N N 353 OLA HO2 H N N 354 OLA H21 H N N 355 OLA H22 H N N 356 OLA H31 H N N 357 OLA H32 H N N 358 OLA H41 H N N 359 OLA H42 H N N 360 OLA H51 H N N 361 OLA H52 H N N 362 OLA H61 H N N 363 OLA H62 H N N 364 OLA H71 H N N 365 OLA H72 H N N 366 OLA H81 H N N 367 OLA H82 H N N 368 OLA H9 H N N 369 OLA H10 H N N 370 OLA H111 H N N 371 OLA H112 H N N 372 OLA H121 H N N 373 OLA H122 H N N 374 OLA H131 H N N 375 OLA H132 H N N 376 OLA H141 H N N 377 OLA H142 H N N 378 OLA H151 H N N 379 OLA H152 H N N 380 OLA H161 H N N 381 OLA H162 H N N 382 OLA H171 H N N 383 OLA H172 H N N 384 OLA H181 H N N 385 OLA H182 H N N 386 OLA H183 H N N 387 PHE N N N N 388 PHE CA C N S 389 PHE C C N N 390 PHE O O N N 391 PHE CB C N N 392 PHE CG C Y N 393 PHE CD1 C Y N 394 PHE CD2 C Y N 395 PHE CE1 C Y N 396 PHE CE2 C Y N 397 PHE CZ C Y N 398 PHE OXT O N N 399 PHE H H N N 400 PHE H2 H N N 401 PHE HA H N N 402 PHE HB2 H N N 403 PHE HB3 H N N 404 PHE HD1 H N N 405 PHE HD2 H N N 406 PHE HE1 H N N 407 PHE HE2 H N N 408 PHE HZ H N N 409 PHE HXT H N N 410 PRO N N N N 411 PRO CA C N S 412 PRO C C N N 413 PRO O O N N 414 PRO CB C N N 415 PRO CG C N N 416 PRO CD C N N 417 PRO OXT O N N 418 PRO H H N N 419 PRO HA H N N 420 PRO HB2 H N N 421 PRO HB3 H N N 422 PRO HG2 H N N 423 PRO HG3 H N N 424 PRO HD2 H N N 425 PRO HD3 H N N 426 PRO HXT H N N 427 SER N N N N 428 SER CA C N S 429 SER C C N N 430 SER O O N N 431 SER CB C N N 432 SER OG O N N 433 SER OXT O N N 434 SER H H N N 435 SER H2 H N N 436 SER HA H N N 437 SER HB2 H N N 438 SER HB3 H N N 439 SER HG H N N 440 SER HXT H N N 441 THR N N N N 442 THR CA C N S 443 THR C C N N 444 THR O O N N 445 THR CB C N R 446 THR OG1 O N N 447 THR CG2 C N N 448 THR OXT O N N 449 THR H H N N 450 THR H2 H N N 451 THR HA H N N 452 THR HB H N N 453 THR HG1 H N N 454 THR HG21 H N N 455 THR HG22 H N N 456 THR HG23 H N N 457 THR HXT H N N 458 TRP N N N N 459 TRP CA C N S 460 TRP C C N N 461 TRP O O N N 462 TRP CB C N N 463 TRP CG C Y N 464 TRP CD1 C Y N 465 TRP CD2 C Y N 466 TRP NE1 N Y N 467 TRP CE2 C Y N 468 TRP CE3 C Y N 469 TRP CZ2 C Y N 470 TRP CZ3 C Y N 471 TRP CH2 C Y N 472 TRP OXT O N N 473 TRP H H N N 474 TRP H2 H N N 475 TRP HA H N N 476 TRP HB2 H N N 477 TRP HB3 H N N 478 TRP HD1 H N N 479 TRP HE1 H N N 480 TRP HE3 H N N 481 TRP HZ2 H N N 482 TRP HZ3 H N N 483 TRP HH2 H N N 484 TRP HXT H N N 485 TYR N N N N 486 TYR CA C N S 487 TYR C C N N 488 TYR O O N N 489 TYR CB C N N 490 TYR CG C Y N 491 TYR CD1 C Y N 492 TYR CD2 C Y N 493 TYR CE1 C Y N 494 TYR CE2 C Y N 495 TYR CZ C Y N 496 TYR OH O N N 497 TYR OXT O N N 498 TYR H H N N 499 TYR H2 H N N 500 TYR HA H N N 501 TYR HB2 H N N 502 TYR HB3 H N N 503 TYR HD1 H N N 504 TYR HD2 H N N 505 TYR HE1 H N N 506 TYR HE2 H N N 507 TYR HH H N N 508 TYR HXT H N N 509 VAL N N N N 510 VAL CA C N S 511 VAL C C N N 512 VAL O O N N 513 VAL CB C N N 514 VAL CG1 C N N 515 VAL CG2 C N N 516 VAL OXT O N N 517 VAL H H N N 518 VAL H2 H N N 519 VAL HA H N N 520 VAL HB H N N 521 VAL HG11 H N N 522 VAL HG12 H N N 523 VAL HG13 H N N 524 VAL HG21 H N N 525 VAL HG22 H N N 526 VAL HG23 H N N 527 VAL HXT H N N 528 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 COA N1A C2A sing Y N 70 COA N1A C6A doub Y N 71 COA C2A N3A doub Y N 72 COA C2A H2A sing N N 73 COA N3A C4A sing Y N 74 COA C4A C5A doub Y N 75 COA C4A N9A sing Y N 76 COA C5A C6A sing Y N 77 COA C5A N7A sing Y N 78 COA C6A N6A sing N N 79 COA N6A H61A sing N N 80 COA N6A H62A sing N N 81 COA N7A C8A doub Y N 82 COA C8A N9A sing Y N 83 COA C8A H8A sing N N 84 COA N9A C1B sing N N 85 COA C1B C2B sing N N 86 COA C1B O4B sing N N 87 COA C1B H1B sing N N 88 COA C2B O2B sing N N 89 COA C2B C3B sing N N 90 COA C2B H2B sing N N 91 COA O2B HO2A sing N N 92 COA C3B O3B sing N N 93 COA C3B C4B sing N N 94 COA C3B H3B sing N N 95 COA O3B P3B sing N N 96 COA P3B O7A doub N N 97 COA P3B O8A sing N N 98 COA P3B O9A sing N N 99 COA O8A HOA8 sing N N 100 COA O9A HOA9 sing N N 101 COA C4B O4B sing N N 102 COA C4B C5B sing N N 103 COA C4B H4B sing N N 104 COA C5B O5B sing N N 105 COA C5B H51A sing N N 106 COA C5B H52A sing N N 107 COA O5B P1A sing N N 108 COA P1A O1A doub N N 109 COA P1A O2A sing N N 110 COA P1A O3A sing N N 111 COA O2A HOA2 sing N N 112 COA O3A P2A sing N N 113 COA P2A O4A doub N N 114 COA P2A O5A sing N N 115 COA P2A O6A sing N N 116 COA O5A HOA5 sing N N 117 COA O6A CCP sing N N 118 COA CBP CCP sing N N 119 COA CBP CDP sing N N 120 COA CBP CEP sing N N 121 COA CBP CAP sing N N 122 COA CCP H121 sing N N 123 COA CCP H122 sing N N 124 COA CDP H131 sing N N 125 COA CDP H132 sing N N 126 COA CDP H133 sing N N 127 COA CEP H141 sing N N 128 COA CEP H142 sing N N 129 COA CEP H143 sing N N 130 COA CAP OAP sing N N 131 COA CAP C9P sing N N 132 COA CAP H10 sing N N 133 COA OAP HO1 sing N N 134 COA C9P O9P doub N N 135 COA C9P N8P sing N N 136 COA N8P C7P sing N N 137 COA N8P HN8 sing N N 138 COA C7P C6P sing N N 139 COA C7P H71 sing N N 140 COA C7P H72 sing N N 141 COA C6P C5P sing N N 142 COA C6P H61 sing N N 143 COA C6P H62 sing N N 144 COA C5P O5P doub N N 145 COA C5P N4P sing N N 146 COA N4P C3P sing N N 147 COA N4P HN4 sing N N 148 COA C3P C2P sing N N 149 COA C3P H31 sing N N 150 COA C3P H32 sing N N 151 COA C2P S1P sing N N 152 COA C2P H21 sing N N 153 COA C2P H22 sing N N 154 COA S1P HS1 sing N N 155 CYS N CA sing N N 156 CYS N H sing N N 157 CYS N H2 sing N N 158 CYS CA C sing N N 159 CYS CA CB sing N N 160 CYS CA HA sing N N 161 CYS C O doub N N 162 CYS C OXT sing N N 163 CYS CB SG sing N N 164 CYS CB HB2 sing N N 165 CYS CB HB3 sing N N 166 CYS SG HG sing N N 167 CYS OXT HXT sing N N 168 GLN N CA sing N N 169 GLN N H sing N N 170 GLN N H2 sing N N 171 GLN CA C sing N N 172 GLN CA CB sing N N 173 GLN CA HA sing N N 174 GLN C O doub N N 175 GLN C OXT sing N N 176 GLN CB CG sing N N 177 GLN CB HB2 sing N N 178 GLN CB HB3 sing N N 179 GLN CG CD sing N N 180 GLN CG HG2 sing N N 181 GLN CG HG3 sing N N 182 GLN CD OE1 doub N N 183 GLN CD NE2 sing N N 184 GLN NE2 HE21 sing N N 185 GLN NE2 HE22 sing N N 186 GLN OXT HXT sing N N 187 GLU N CA sing N N 188 GLU N H sing N N 189 GLU N H2 sing N N 190 GLU CA C sing N N 191 GLU CA CB sing N N 192 GLU CA HA sing N N 193 GLU C O doub N N 194 GLU C OXT sing N N 195 GLU CB CG sing N N 196 GLU CB HB2 sing N N 197 GLU CB HB3 sing N N 198 GLU CG CD sing N N 199 GLU CG HG2 sing N N 200 GLU CG HG3 sing N N 201 GLU CD OE1 doub N N 202 GLU CD OE2 sing N N 203 GLU OE2 HE2 sing N N 204 GLU OXT HXT sing N N 205 GLY N CA sing N N 206 GLY N H sing N N 207 GLY N H2 sing N N 208 GLY CA C sing N N 209 GLY CA HA2 sing N N 210 GLY CA HA3 sing N N 211 GLY C O doub N N 212 GLY C OXT sing N N 213 GLY OXT HXT sing N N 214 HIS N CA sing N N 215 HIS N H sing N N 216 HIS N H2 sing N N 217 HIS CA C sing N N 218 HIS CA CB sing N N 219 HIS CA HA sing N N 220 HIS C O doub N N 221 HIS C OXT sing N N 222 HIS CB CG sing N N 223 HIS CB HB2 sing N N 224 HIS CB HB3 sing N N 225 HIS CG ND1 sing Y N 226 HIS CG CD2 doub Y N 227 HIS ND1 CE1 doub Y N 228 HIS ND1 HD1 sing N N 229 HIS CD2 NE2 sing Y N 230 HIS CD2 HD2 sing N N 231 HIS CE1 NE2 sing Y N 232 HIS CE1 HE1 sing N N 233 HIS NE2 HE2 sing N N 234 HIS OXT HXT sing N N 235 HOH O H1 sing N N 236 HOH O H2 sing N N 237 ILE N CA sing N N 238 ILE N H sing N N 239 ILE N H2 sing N N 240 ILE CA C sing N N 241 ILE CA CB sing N N 242 ILE CA HA sing N N 243 ILE C O doub N N 244 ILE C OXT sing N N 245 ILE CB CG1 sing N N 246 ILE CB CG2 sing N N 247 ILE CB HB sing N N 248 ILE CG1 CD1 sing N N 249 ILE CG1 HG12 sing N N 250 ILE CG1 HG13 sing N N 251 ILE CG2 HG21 sing N N 252 ILE CG2 HG22 sing N N 253 ILE CG2 HG23 sing N N 254 ILE CD1 HD11 sing N N 255 ILE CD1 HD12 sing N N 256 ILE CD1 HD13 sing N N 257 ILE OXT HXT sing N N 258 LEU N CA sing N N 259 LEU N H sing N N 260 LEU N H2 sing N N 261 LEU CA C sing N N 262 LEU CA CB sing N N 263 LEU CA HA sing N N 264 LEU C O doub N N 265 LEU C OXT sing N N 266 LEU CB CG sing N N 267 LEU CB HB2 sing N N 268 LEU CB HB3 sing N N 269 LEU CG CD1 sing N N 270 LEU CG CD2 sing N N 271 LEU CG HG sing N N 272 LEU CD1 HD11 sing N N 273 LEU CD1 HD12 sing N N 274 LEU CD1 HD13 sing N N 275 LEU CD2 HD21 sing N N 276 LEU CD2 HD22 sing N N 277 LEU CD2 HD23 sing N N 278 LEU OXT HXT sing N N 279 LYS N CA sing N N 280 LYS N H sing N N 281 LYS N H2 sing N N 282 LYS CA C sing N N 283 LYS CA CB sing N N 284 LYS CA HA sing N N 285 LYS C O doub N N 286 LYS C OXT sing N N 287 LYS CB CG sing N N 288 LYS CB HB2 sing N N 289 LYS CB HB3 sing N N 290 LYS CG CD sing N N 291 LYS CG HG2 sing N N 292 LYS CG HG3 sing N N 293 LYS CD CE sing N N 294 LYS CD HD2 sing N N 295 LYS CD HD3 sing N N 296 LYS CE NZ sing N N 297 LYS CE HE2 sing N N 298 LYS CE HE3 sing N N 299 LYS NZ HZ1 sing N N 300 LYS NZ HZ2 sing N N 301 LYS NZ HZ3 sing N N 302 LYS OXT HXT sing N N 303 MET N CA sing N N 304 MET N H sing N N 305 MET N H2 sing N N 306 MET CA C sing N N 307 MET CA CB sing N N 308 MET CA HA sing N N 309 MET C O doub N N 310 MET C OXT sing N N 311 MET CB CG sing N N 312 MET CB HB2 sing N N 313 MET CB HB3 sing N N 314 MET CG SD sing N N 315 MET CG HG2 sing N N 316 MET CG HG3 sing N N 317 MET SD CE sing N N 318 MET CE HE1 sing N N 319 MET CE HE2 sing N N 320 MET CE HE3 sing N N 321 MET OXT HXT sing N N 322 OLA C1 O1 doub N N 323 OLA C1 O2 sing N N 324 OLA C1 C2 sing N N 325 OLA O2 HO2 sing N N 326 OLA C2 C3 sing N N 327 OLA C2 H21 sing N N 328 OLA C2 H22 sing N N 329 OLA C3 C4 sing N N 330 OLA C3 H31 sing N N 331 OLA C3 H32 sing N N 332 OLA C4 C5 sing N N 333 OLA C4 H41 sing N N 334 OLA C4 H42 sing N N 335 OLA C5 C6 sing N N 336 OLA C5 H51 sing N N 337 OLA C5 H52 sing N N 338 OLA C6 C7 sing N N 339 OLA C6 H61 sing N N 340 OLA C6 H62 sing N N 341 OLA C7 C8 sing N N 342 OLA C7 H71 sing N N 343 OLA C7 H72 sing N N 344 OLA C8 C9 sing N N 345 OLA C8 H81 sing N N 346 OLA C8 H82 sing N N 347 OLA C9 C10 doub N Z 348 OLA C9 H9 sing N N 349 OLA C10 C11 sing N N 350 OLA C10 H10 sing N N 351 OLA C11 C12 sing N N 352 OLA C11 H111 sing N N 353 OLA C11 H112 sing N N 354 OLA C12 C13 sing N N 355 OLA C12 H121 sing N N 356 OLA C12 H122 sing N N 357 OLA C13 C14 sing N N 358 OLA C13 H131 sing N N 359 OLA C13 H132 sing N N 360 OLA C14 C15 sing N N 361 OLA C14 H141 sing N N 362 OLA C14 H142 sing N N 363 OLA C15 C16 sing N N 364 OLA C15 H151 sing N N 365 OLA C15 H152 sing N N 366 OLA C16 C17 sing N N 367 OLA C16 H161 sing N N 368 OLA C16 H162 sing N N 369 OLA C17 C18 sing N N 370 OLA C17 H171 sing N N 371 OLA C17 H172 sing N N 372 OLA C18 H181 sing N N 373 OLA C18 H182 sing N N 374 OLA C18 H183 sing N N 375 PHE N CA sing N N 376 PHE N H sing N N 377 PHE N H2 sing N N 378 PHE CA C sing N N 379 PHE CA CB sing N N 380 PHE CA HA sing N N 381 PHE C O doub N N 382 PHE C OXT sing N N 383 PHE CB CG sing N N 384 PHE CB HB2 sing N N 385 PHE CB HB3 sing N N 386 PHE CG CD1 doub Y N 387 PHE CG CD2 sing Y N 388 PHE CD1 CE1 sing Y N 389 PHE CD1 HD1 sing N N 390 PHE CD2 CE2 doub Y N 391 PHE CD2 HD2 sing N N 392 PHE CE1 CZ doub Y N 393 PHE CE1 HE1 sing N N 394 PHE CE2 CZ sing Y N 395 PHE CE2 HE2 sing N N 396 PHE CZ HZ sing N N 397 PHE OXT HXT sing N N 398 PRO N CA sing N N 399 PRO N CD sing N N 400 PRO N H sing N N 401 PRO CA C sing N N 402 PRO CA CB sing N N 403 PRO CA HA sing N N 404 PRO C O doub N N 405 PRO C OXT sing N N 406 PRO CB CG sing N N 407 PRO CB HB2 sing N N 408 PRO CB HB3 sing N N 409 PRO CG CD sing N N 410 PRO CG HG2 sing N N 411 PRO CG HG3 sing N N 412 PRO CD HD2 sing N N 413 PRO CD HD3 sing N N 414 PRO OXT HXT sing N N 415 SER N CA sing N N 416 SER N H sing N N 417 SER N H2 sing N N 418 SER CA C sing N N 419 SER CA CB sing N N 420 SER CA HA sing N N 421 SER C O doub N N 422 SER C OXT sing N N 423 SER CB OG sing N N 424 SER CB HB2 sing N N 425 SER CB HB3 sing N N 426 SER OG HG sing N N 427 SER OXT HXT sing N N 428 THR N CA sing N N 429 THR N H sing N N 430 THR N H2 sing N N 431 THR CA C sing N N 432 THR CA CB sing N N 433 THR CA HA sing N N 434 THR C O doub N N 435 THR C OXT sing N N 436 THR CB OG1 sing N N 437 THR CB CG2 sing N N 438 THR CB HB sing N N 439 THR OG1 HG1 sing N N 440 THR CG2 HG21 sing N N 441 THR CG2 HG22 sing N N 442 THR CG2 HG23 sing N N 443 THR OXT HXT sing N N 444 TRP N CA sing N N 445 TRP N H sing N N 446 TRP N H2 sing N N 447 TRP CA C sing N N 448 TRP CA CB sing N N 449 TRP CA HA sing N N 450 TRP C O doub N N 451 TRP C OXT sing N N 452 TRP CB CG sing N N 453 TRP CB HB2 sing N N 454 TRP CB HB3 sing N N 455 TRP CG CD1 doub Y N 456 TRP CG CD2 sing Y N 457 TRP CD1 NE1 sing Y N 458 TRP CD1 HD1 sing N N 459 TRP CD2 CE2 doub Y N 460 TRP CD2 CE3 sing Y N 461 TRP NE1 CE2 sing Y N 462 TRP NE1 HE1 sing N N 463 TRP CE2 CZ2 sing Y N 464 TRP CE3 CZ3 doub Y N 465 TRP CE3 HE3 sing N N 466 TRP CZ2 CH2 doub Y N 467 TRP CZ2 HZ2 sing N N 468 TRP CZ3 CH2 sing Y N 469 TRP CZ3 HZ3 sing N N 470 TRP CH2 HH2 sing N N 471 TRP OXT HXT sing N N 472 TYR N CA sing N N 473 TYR N H sing N N 474 TYR N H2 sing N N 475 TYR CA C sing N N 476 TYR CA CB sing N N 477 TYR CA HA sing N N 478 TYR C O doub N N 479 TYR C OXT sing N N 480 TYR CB CG sing N N 481 TYR CB HB2 sing N N 482 TYR CB HB3 sing N N 483 TYR CG CD1 doub Y N 484 TYR CG CD2 sing Y N 485 TYR CD1 CE1 sing Y N 486 TYR CD1 HD1 sing N N 487 TYR CD2 CE2 doub Y N 488 TYR CD2 HD2 sing N N 489 TYR CE1 CZ doub Y N 490 TYR CE1 HE1 sing N N 491 TYR CE2 CZ sing Y N 492 TYR CE2 HE2 sing N N 493 TYR CZ OH sing N N 494 TYR OH HH sing N N 495 TYR OXT HXT sing N N 496 VAL N CA sing N N 497 VAL N H sing N N 498 VAL N H2 sing N N 499 VAL CA C sing N N 500 VAL CA CB sing N N 501 VAL CA HA sing N N 502 VAL C O doub N N 503 VAL C OXT sing N N 504 VAL CB CG1 sing N N 505 VAL CB CG2 sing N N 506 VAL CB HB sing N N 507 VAL CG1 HG11 sing N N 508 VAL CG1 HG12 sing N N 509 VAL CG1 HG13 sing N N 510 VAL CG2 HG21 sing N N 511 VAL CG2 HG22 sing N N 512 VAL CG2 HG23 sing N N 513 VAL OXT HXT sing N N 514 # _em_admin.current_status REL _em_admin.deposition_date 2025-12-09 _em_admin.deposition_site PDBE _em_admin.entry_id 9TKA _em_admin.last_update 2026-07-29 _em_admin.map_release_date 2026-07-29 _em_admin.title 'Structure of human CLN8 in the presence of oleate' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 4932 _em_entity_assembly_recombinant.organism 'Saccharomyces cerevisiae' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 51.05 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TFS FALCON 4i (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? Warp ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? Warp ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Medical Research Council (MRC, United Kingdom)' 'United Kingdom' MC_UU_00028 1 'Wellcome Trust' 'United Kingdom' SBF00101078 2 # _atom_sites.entry_id 9TKA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ #