HEADER IMMUNE SYSTEM 14-DEC-25 9TMK TITLE STRUCTURE OF CYLD CAP-GLY2 BOUND TO LISTERIA EFFECTOR PROTEIN INLC COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERNALIN C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INLC,INTERNALIN-RELATED PROTEIN A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE CYLD; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: DEUBIQUITINATING ENZYME CYLD,UBIQUITIN THIOESTERASE CYLD, COMPND 10 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE CYLD; COMPND 11 EC: 3.4.19.12; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: INLC, IRPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CYLD, CYLD1, KIAA0849, HSPC057; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS EFFECTOR PROTEIN, DEUBIQUITINATING, UBIQUITIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.J.ELLISON,P.R.ELLIOTT REVDAT 1 30-SEP-26 9TMK 0 JRNL AUTH D.A.AMMENDOLIA,C.J.ELLISON,Y.ZHENG,E.COYAUD,E.M.N.LAURENT, JRNL AUTH 2 B.R.YAN,B.MANNING,A.WALDMANN,J.M.TAN,S.FRENDO-CUMBO,C.LYONS, JRNL AUTH 3 J.Y.YOUN,B.RAUGHT,K.IRETON,D.E.HIGGINS,P.R.ELLIOTT, JRNL AUTH 4 J.H.BRUMELL JRNL TITL TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN JRNL DOI 10.1038/S41467-026-77063-5 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8600 - 4.2300 1.00 2954 174 0.1797 0.2241 REMARK 3 2 4.2300 - 3.3600 1.00 2867 118 0.1589 0.2021 REMARK 3 3 3.3600 - 2.9300 1.00 2820 140 0.1750 0.2239 REMARK 3 4 2.9300 - 2.6700 1.00 2782 159 0.1835 0.2137 REMARK 3 5 2.6700 - 2.4800 1.00 2776 141 0.1804 0.2007 REMARK 3 6 2.4800 - 2.3300 1.00 2777 148 0.1671 0.1819 REMARK 3 7 2.3300 - 2.2100 1.00 2792 131 0.1686 0.2266 REMARK 3 8 2.2100 - 2.1200 1.00 2731 155 0.1757 0.2129 REMARK 3 9 2.1200 - 2.0300 1.00 2723 155 0.1938 0.2230 REMARK 3 10 2.0300 - 1.9600 1.00 2773 133 0.2001 0.2519 REMARK 3 11 1.9600 - 1.9000 1.00 2732 146 0.2029 0.2482 REMARK 3 12 1.9000 - 1.8500 1.00 2746 145 0.2293 0.2751 REMARK 3 13 1.8500 - 1.8000 1.00 2763 139 0.2765 0.3104 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2771 REMARK 3 ANGLE : 0.626 3771 REMARK 3 CHIRALITY : 0.048 435 REMARK 3 PLANARITY : 0.005 491 REMARK 3 DIHEDRAL : 14.297 1046 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9502 -5.4859 2.3623 REMARK 3 T TENSOR REMARK 3 T11: 0.4874 T22: 0.3369 REMARK 3 T33: 0.3153 T12: -0.1854 REMARK 3 T13: 0.0154 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.9934 L22: 3.2231 REMARK 3 L33: 1.6261 L12: 1.1003 REMARK 3 L13: 0.3538 L23: -0.2200 REMARK 3 S TENSOR REMARK 3 S11: 0.1848 S12: -0.2366 S13: -0.4046 REMARK 3 S21: 0.2433 S22: -0.1587 S23: 0.1588 REMARK 3 S31: 0.7891 S32: -0.4535 S33: -0.0075 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8449 13.4625 -6.8081 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.1861 REMARK 3 T33: 0.2440 T12: -0.0127 REMARK 3 T13: -0.0037 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 2.4546 L22: 2.0133 REMARK 3 L33: 2.1035 L12: -0.4817 REMARK 3 L13: -0.9225 L23: 0.1538 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.1449 S13: -0.0950 REMARK 3 S21: -0.0567 S22: -0.0120 S23: 0.0228 REMARK 3 S31: 0.1239 S32: -0.0686 S33: 0.0115 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 220 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1041 16.5037 -11.1390 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.1837 REMARK 3 T33: 0.1829 T12: -0.0076 REMARK 3 T13: 0.0082 T23: -0.0476 REMARK 3 L TENSOR REMARK 3 L11: 4.2084 L22: 0.8894 REMARK 3 L33: 2.3742 L12: 0.8013 REMARK 3 L13: 0.8871 L23: -0.0092 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: 0.2635 S13: -0.1873 REMARK 3 S21: -0.1210 S22: 0.0881 S23: -0.0856 REMARK 3 S31: -0.0287 S32: 0.2209 S33: -0.0209 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 227 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6712 0.6547 -35.3347 REMARK 3 T TENSOR REMARK 3 T11: 0.7805 T22: 0.8695 REMARK 3 T33: 0.3875 T12: -0.2486 REMARK 3 T13: -0.0301 T23: -0.2202 REMARK 3 L TENSOR REMARK 3 L11: 4.0975 L22: 1.5613 REMARK 3 L33: 0.9066 L12: -1.2985 REMARK 3 L13: 0.0030 L23: -0.5647 REMARK 3 S TENSOR REMARK 3 S11: 0.1340 S12: 0.4369 S13: -0.7036 REMARK 3 S21: -0.7888 S22: -0.3791 S23: 0.5605 REMARK 3 S31: 0.5064 S32: -1.0826 S33: 0.2662 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 235 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6133 16.9313 -28.7722 REMARK 3 T TENSOR REMARK 3 T11: 0.7330 T22: 0.6754 REMARK 3 T33: 0.4477 T12: 0.0947 REMARK 3 T13: -0.0166 T23: -0.1188 REMARK 3 L TENSOR REMARK 3 L11: 8.0945 L22: 5.0185 REMARK 3 L33: 2.1880 L12: -1.2912 REMARK 3 L13: -2.4989 L23: 3.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.1287 S12: -0.2659 S13: 0.9258 REMARK 3 S21: 0.3217 S22: 0.0471 S23: 0.2943 REMARK 3 S31: -0.6614 S32: -0.3817 S33: -0.2249 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 243 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7821 2.2938 -25.6280 REMARK 3 T TENSOR REMARK 3 T11: 0.5557 T22: 0.4816 REMARK 3 T33: 0.3233 T12: -0.1293 REMARK 3 T13: 0.0177 T23: -0.1370 REMARK 3 L TENSOR REMARK 3 L11: 2.9750 L22: 1.7603 REMARK 3 L33: 3.1702 L12: 1.5223 REMARK 3 L13: -1.8521 L23: -1.6379 REMARK 3 S TENSOR REMARK 3 S11: -0.4199 S12: 0.4420 S13: -0.3240 REMARK 3 S21: -0.4306 S22: 0.1584 S23: 0.0163 REMARK 3 S31: 0.3502 S32: -0.9095 S33: 0.3135 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 264 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1510 7.5493 -23.8981 REMARK 3 T TENSOR REMARK 3 T11: 0.3428 T22: 0.3026 REMARK 3 T33: 0.2717 T12: 0.0149 REMARK 3 T13: 0.0297 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 4.1000 L22: 7.2254 REMARK 3 L33: 5.1201 L12: 4.2701 REMARK 3 L13: -1.4817 L23: -1.7214 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: 0.2019 S13: -0.4318 REMARK 3 S21: -0.0438 S22: -0.1109 S23: -0.4438 REMARK 3 S31: 0.1602 S32: 0.0543 S33: 0.2235 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 280 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3939 0.4033 -21.9129 REMARK 3 T TENSOR REMARK 3 T11: 0.6741 T22: 0.5015 REMARK 3 T33: 0.6594 T12: 0.0643 REMARK 3 T13: 0.1307 T23: -0.0925 REMARK 3 L TENSOR REMARK 3 L11: 1.4164 L22: 5.0859 REMARK 3 L33: 2.8537 L12: 1.8633 REMARK 3 L13: -0.3428 L23: -1.4166 REMARK 3 S TENSOR REMARK 3 S11: -0.3209 S12: 0.0961 S13: -1.1571 REMARK 3 S21: -1.1283 S22: -0.3620 S23: -0.9276 REMARK 3 S31: 1.1534 S32: 0.5564 S33: 0.6268 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 294 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7823 7.3489 -25.8153 REMARK 3 T TENSOR REMARK 3 T11: 0.5011 T22: 0.6455 REMARK 3 T33: 0.3363 T12: 0.0547 REMARK 3 T13: -0.0200 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 4.8503 L22: 4.4252 REMARK 3 L33: 3.6417 L12: 1.5442 REMARK 3 L13: -0.2713 L23: 0.1514 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: 0.5170 S13: 0.3356 REMARK 3 S21: -0.5262 S22: 0.0157 S23: 0.4153 REMARK 3 S31: -0.4868 S32: -1.1060 S33: -0.0776 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9TMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-25. REMARK 100 THE DEPOSITION ID IS D_1292153008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95374 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38204 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 8,000, 100 MM TRIS PH REMARK 280 7.0 AND 200 MM MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.41650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.86150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.86150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.41650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 224 REMARK 465 PRO B 225 REMARK 465 GLU B 226 REMARK 465 ALA B 305 REMARK 465 LEU B 306 REMARK 465 SER B 307 REMARK 465 GLU B 308 REMARK 465 SER B 309 REMARK 465 VAL B 310 REMARK 465 THR B 311 REMARK 465 GLN B 312 REMARK 465 GLU B 313 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 613 O HOH A 622 2.02 REMARK 500 O HOH B 429 O HOH B 436 2.04 REMARK 500 O HOH A 483 O HOH A 549 2.13 REMARK 500 O HOH A 596 O HOH A 611 2.15 REMARK 500 O HOH A 454 O HOH A 601 2.16 REMARK 500 O HOH A 428 O HOH A 530 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 104 34.45 -141.36 REMARK 500 HIS A 106 68.19 62.27 REMARK 500 ASN A 129 -156.97 -131.46 REMARK 500 LEU A 147 43.61 -147.34 REMARK 500 ASN A 150 -165.59 -117.00 REMARK 500 ASN A 172 -151.14 -94.44 REMARK 500 LYS A 175 -76.60 -99.07 REMARK 500 ASN A 194 -149.63 -105.64 REMARK 500 SER A 275 111.44 -162.34 REMARK 500 ASN B 275 -2.16 -143.89 REMARK 500 ILE B 302 -62.90 -97.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 421 O REMARK 620 2 HOH A 481 O 96.4 REMARK 620 3 HOH A 639 O 84.5 179.0 REMARK 620 4 HOH A 645 O 100.2 84.3 95.3 REMARK 620 5 HOH A 649 O 160.9 90.7 88.5 98.2 REMARK 620 N 1 2 3 4 DBREF 9TMK A 35 297 UNP P71451 INLC_LISMG 35 297 DBREF 9TMK B 224 313 UNP Q9NQC7 CYLD_HUMAN 218 313 SEQADV 9TMK GLY A 33 UNP P71451 EXPRESSION TAG SEQADV 9TMK PRO A 34 UNP P71451 EXPRESSION TAG SEQADV 9TMK B UNP Q9NQC7 GLY 220 DELETION SEQADV 9TMK B UNP Q9NQC7 ASP 221 DELETION SEQADV 9TMK B UNP Q9NQC7 THR 222 DELETION SEQADV 9TMK B UNP Q9NQC7 MET 223 DELETION SEQADV 9TMK B UNP Q9NQC7 GLN 224 DELETION SEQADV 9TMK B UNP Q9NQC7 VAL 225 DELETION SEQRES 1 A 265 GLY PRO GLU SER ILE GLN ARG PRO THR PRO ILE ASN GLN SEQRES 2 A 265 VAL PHE PRO ASP PRO GLY LEU ALA ASN ALA VAL LYS GLN SEQRES 3 A 265 ASN LEU GLY LYS GLN SER VAL THR ASP LEU VAL SER GLN SEQRES 4 A 265 LYS GLU LEU SER GLY VAL GLN ASN PHE ASN GLY ASP ASN SEQRES 5 A 265 SER ASN ILE GLN SER LEU ALA GLY MET GLN PHE PHE THR SEQRES 6 A 265 ASN LEU LYS GLU LEU HIS LEU SER HIS ASN GLN ILE SER SEQRES 7 A 265 ASP LEU SER PRO LEU LYS ASP LEU THR LYS LEU GLU GLU SEQRES 8 A 265 LEU SER VAL ASN ARG ASN ARG LEU LYS ASN LEU ASN GLY SEQRES 9 A 265 ILE PRO SER ALA CYS LEU SER ARG LEU PHE LEU ASP ASN SEQRES 10 A 265 ASN GLU LEU ARG ASP THR ASP SER LEU ILE HIS LEU LYS SEQRES 11 A 265 ASN LEU GLU ILE LEU SER ILE ARG ASN ASN LYS LEU LYS SEQRES 12 A 265 SER ILE VAL MET LEU GLY PHE LEU SER LYS LEU GLU VAL SEQRES 13 A 265 LEU ASP LEU HIS GLY ASN GLU ILE THR ASN THR GLY GLY SEQRES 14 A 265 LEU THR ARG LEU LYS LYS VAL ASN TRP ILE ASP LEU THR SEQRES 15 A 265 GLY GLN LYS CYS VAL ASN GLU PRO VAL LYS TYR GLN PRO SEQRES 16 A 265 GLU LEU TYR ILE THR ASN THR VAL LYS ASP PRO ASP GLY SEQRES 17 A 265 ARG TRP ILE SER PRO TYR TYR ILE SER ASN GLY GLY SER SEQRES 18 A 265 TYR VAL ASP GLY CYS VAL LEU TRP GLU LEU PRO VAL TYR SEQRES 19 A 265 THR ASP GLU VAL SER TYR LYS PHE SER GLU TYR ILE ASN SEQRES 20 A 265 VAL GLY GLU THR GLU ALA ILE PHE ASP GLY THR VAL THR SEQRES 21 A 265 GLN PRO ILE LYS ASN SEQRES 1 B 90 GLY PRO GLU LEU PRO PRO LEU GLU ILE ASN SER ARG VAL SEQRES 2 B 90 SER LEU LYS VAL GLY GLU THR ILE GLU SER GLY THR VAL SEQRES 3 B 90 ILE PHE CYS ASP VAL LEU PRO GLY LYS GLU SER LEU GLY SEQRES 4 B 90 TYR PHE VAL GLY VAL ASP MET ASP ASN PRO ILE GLY ASN SEQRES 5 B 90 TRP ASP GLY ARG PHE ASP GLY VAL GLN LEU CYS SER PHE SEQRES 6 B 90 ALA CYS VAL GLU SER THR ILE LEU LEU HIS ILE ASN ASP SEQRES 7 B 90 ILE ILE PRO ALA LEU SER GLU SER VAL THR GLN GLU HET MG A 301 1 HET TRS A 302 8 HETNAM MG MAGNESIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 MG MG 2+ FORMUL 4 TRS C4 H12 N O3 1+ FORMUL 5 HOH *304(H2 O) HELIX 1 AA1 ILE A 43 PHE A 47 1 5 HELIX 2 AA2 ASP A 49 GLY A 61 1 13 HELIX 3 AA3 SER A 70 GLY A 76 1 7 HELIX 4 AA4 GLY A 92 PHE A 96 5 5 HELIX 5 AA5 LEU A 112 LYS A 116 5 5 HELIX 6 AA6 THR A 155 ILE A 159 5 5 HELIX 7 AA7 MET A 179 LEU A 183 5 5 HELIX 8 AA8 GLY A 201 LEU A 205 5 5 HELIX 9 AA9 LYS B 258 LEU B 261 5 4 HELIX 10 AB1 ASN B 300 ILE B 302 5 3 SHEET 1 AA1 2 THR A 41 PRO A 42 0 SHEET 2 AA1 2 LEU A 68 VAL A 69 -1 O VAL A 69 N THR A 41 SHEET 1 AA2 9 ASN A 79 ASN A 81 0 SHEET 2 AA2 9 GLU A 101 HIS A 103 1 O HIS A 103 N PHE A 80 SHEET 3 AA2 9 GLU A 123 SER A 125 1 O GLU A 123 N LEU A 102 SHEET 4 AA2 9 ARG A 144 PHE A 146 1 O PHE A 146 N LEU A 124 SHEET 5 AA2 9 ILE A 166 SER A 168 1 O ILE A 166 N LEU A 145 SHEET 6 AA2 9 VAL A 188 ASP A 190 1 O ASP A 190 N LEU A 167 SHEET 7 AA2 9 TRP A 210 VAL A 219 1 O TRP A 210 N LEU A 189 SHEET 8 AA2 9 THR A 283 LYS A 296 1 O THR A 292 N CYS A 218 SHEET 9 AA2 9 VAL A 223 LYS A 224 1 N VAL A 223 O LYS A 296 SHEET 1 AA310 ASN A 79 ASN A 81 0 SHEET 2 AA310 GLU A 101 HIS A 103 1 O HIS A 103 N PHE A 80 SHEET 3 AA310 GLU A 123 SER A 125 1 O GLU A 123 N LEU A 102 SHEET 4 AA310 ARG A 144 PHE A 146 1 O PHE A 146 N LEU A 124 SHEET 5 AA310 ILE A 166 SER A 168 1 O ILE A 166 N LEU A 145 SHEET 6 AA310 VAL A 188 ASP A 190 1 O ASP A 190 N LEU A 167 SHEET 7 AA310 TRP A 210 VAL A 219 1 O TRP A 210 N LEU A 189 SHEET 8 AA310 THR A 283 LYS A 296 1 O THR A 292 N CYS A 218 SHEET 9 AA310 GLU A 269 VAL A 280 -1 N VAL A 270 O GLN A 293 SHEET 10 AA310 TYR A 247 ILE A 248 -1 N TYR A 247 O LYS A 273 SHEET 1 AA4 3 GLU A 228 THR A 232 0 SHEET 2 AA4 3 CYS A 258 GLU A 262 -1 O VAL A 259 N ILE A 231 SHEET 3 AA4 3 SER A 253 VAL A 255 -1 N SER A 253 O LEU A 260 SHEET 1 AA5 4 ARG B 235 VAL B 240 0 SHEET 2 AA5 4 THR B 243 VAL B 254 -1 O GLU B 245 N LEU B 238 SHEET 3 AA5 4 TYR B 263 MET B 269 -1 O ASP B 268 N THR B 248 SHEET 4 AA5 4 THR B 294 HIS B 298 -1 O LEU B 297 N VAL B 265 SHEET 1 AA6 2 ARG B 279 PHE B 280 0 SHEET 2 AA6 2 VAL B 283 GLN B 284 -1 O VAL B 283 N PHE B 280 LINK MG MG A 301 O HOH A 421 1555 1555 2.02 LINK MG MG A 301 O HOH A 481 1555 1555 2.14 LINK MG MG A 301 O HOH A 639 1555 1555 2.14 LINK MG MG A 301 O HOH A 645 1555 1455 2.04 LINK MG MG A 301 O HOH A 649 1555 4455 2.32 CRYST1 58.833 70.010 97.723 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016997 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010233 0.00000 CONECT 2707 2736 2796 2954 CONECT 2708 2709 2710 2711 2712 CONECT 2709 2708 2713 CONECT 2710 2708 2714 CONECT 2711 2708 2715 CONECT 2712 2708 CONECT 2713 2709 CONECT 2714 2710 CONECT 2715 2711 CONECT 2736 2707 CONECT 2796 2707 CONECT 2954 2707 MASTER 416 0 2 10 30 0 0 6 2998 2 12 28 END