HEADER OXIDOREDUCTASE 14-JAN-26 9TW9 TITLE LEGIONELLA MONOCYTOGENES SODA WT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: B, A; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: SODA, A8L61_06300, AB917_03900, ABZ57_04375, AJL21_03320, SOURCE 5 ART25_07045, ARY78_04305, B1N52_07385, B1S26_09780, B5K54_05280, SOURCE 6 BB997_07680, BCZ19_05230, BCZ21_09530, CA369_07515, CAV64_04290, SOURCE 7 CW845_06920, D4920_01675, D4B11_00565, D5N24_03645, D7104_07525, SOURCE 8 DCK61_09765, DCT16_07745, DQ70_06745, DU018_04420, DYZ80_01535, SOURCE 9 E1W56_04905, E5F58_09520, EX365_06985, EXZ73_00150, F6436_12875, SOURCE 10 F6515_04670, FA835_07670, FLQ97_07020, FLR03_13450, FNX40_09325, SOURCE 11 FV747_03180, G3O21_000994, GHH22_03270, GI949_03855, GJW51_06620, SOURCE 12 GQG13_08125, GYR60_09845, GYS09_07650, GYX23_06160, GYY14_05675, SOURCE 13 HQN34_002220, HZJ64_06955, KV70_03880, UI29_08045, Y261_07385; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUPEROXIDE DISMUTASE, SOD, REDOX, METALLOENZYME, PROTEIN EVOLUTION, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.S.MACKENZIE,A.BASLE,K.J.WLDRON REVDAT 1 11-MAR-26 9TW9 0 JRNL AUTH E.S.MACKENZIE,K.M.SENDRA,A.BASLE,R.MAZGAJ,T.E.KEHL-FIE, JRNL AUTH 2 K.J.WALDRON JRNL TITL AN ENZYME'S METAL PREFERENCE EVOLVES THROUGH REDOX JRNL TITL 2 MODULATION DRIVEN BY THE COFACTOR'S SECONDARY COORDINATION JRNL TITL 3 SPHERE. JRNL REF MOL.BIOL.EVOL. 2026 JRNL REFN ESSN 1537-1719 JRNL PMID 41684149 JRNL DOI 10.1093/MOLBEV/MSAG040 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0326 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 57060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.028 REMARK 3 FREE R VALUE TEST SET COUNT : 2869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3898 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.4270 REMARK 3 BIN FREE R VALUE SET COUNT : 208 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3190 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65700 REMARK 3 B22 (A**2) : -0.28100 REMARK 3 B33 (A**2) : -0.37500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.348 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3292 ; 0.014 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2940 ; 0.005 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4482 ; 2.011 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6784 ; 0.889 ; 1.566 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ;12.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 42 ;40.322 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;15.401 ;10.300 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3870 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 778 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 690 ; 0.248 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 36 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1622 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 250 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.058 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1606 ; 2.811 ; 2.509 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1606 ; 2.811 ; 2.509 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2004 ; 3.487 ; 3.753 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2005 ; 3.487 ; 3.755 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1686 ; 4.195 ; 2.786 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1687 ; 4.194 ; 2.789 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2478 ; 5.758 ; 4.045 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2479 ; 5.756 ; 4.048 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 2 B 202 NULL REMARK 3 1 B 2 B 202 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9TW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1292153571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89842 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57150 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 52.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 52.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE PH 5.0, 20% W/V PEG 6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.36000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.26000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.26000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 ASN B 92 O HOH B 542 0.99 REMARK 500 OE2 GLU A 56 O HOH A 401 1.53 REMARK 500 CB ASN B 92 O HOH B 542 1.95 REMARK 500 O HOH B 414 O HOH B 542 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 22 CD GLU B 22 OE1 0.086 REMARK 500 GLU B 114 CD GLU B 114 OE2 -0.071 REMARK 500 GLU A 56 CD GLU A 56 OE1 0.092 REMARK 500 GLU A 114 CD GLU A 114 OE2 0.216 REMARK 500 GLU A 117 CD GLU A 117 OE2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 17 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG B 73 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 126 CB - CG - CD ANGL. DEV. = -18.9 DEGREES REMARK 500 ARG B 126 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 126 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 PRO A 17 C - N - CD ANGL. DEV. = -20.2 DEGREES REMARK 500 PRO A 17 CA - N - CD ANGL. DEV. = -14.2 DEGREES REMARK 500 PRO A 17 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 GLU A 114 CG - CD - OE1 ANGL. DEV. = -17.4 DEGREES REMARK 500 GLU A 114 CG - CD - OE2 ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG A 126 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 197 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 197 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 18 -72.02 -91.52 REMARK 500 LYS B 30 -64.72 -103.98 REMARK 500 ASN B 148 -119.97 56.98 REMARK 500 TYR B 170 -5.52 -140.20 REMARK 500 GLN B 175 -127.28 43.35 REMARK 500 PRO A 17 18.41 -40.31 REMARK 500 ASN A 18 -68.47 -94.67 REMARK 500 LYS A 30 -62.82 -105.40 REMARK 500 ASN A 148 -124.07 54.84 REMARK 500 TYR A 170 -3.13 -140.24 REMARK 500 GLN A 175 -127.84 45.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 16 PRO A 17 -55.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 16 -16.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 590 DISTANCE = 6.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 27 NE2 REMARK 620 2 HIS B 82 NE2 91.3 REMARK 620 3 ASP B 164 OD2 84.1 108.7 REMARK 620 4 HIS B 168 NE2 91.2 137.1 114.2 REMARK 620 5 HOH B 487 O 178.6 89.3 94.5 89.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HIS A 82 NE2 91.4 REMARK 620 3 ASP A 164 OD2 82.3 100.5 REMARK 620 4 HIS A 168 NE2 87.4 147.5 111.5 REMARK 620 5 HOH A 409 O 96.5 76.8 177.1 71.0 REMARK 620 6 HOH A 469 O 175.7 92.8 96.1 89.5 85.3 REMARK 620 N 1 2 3 4 5 DBREF1 9TW9 B 1 202 UNP A0A0B8R4R3_LISMN DBREF2 9TW9 B A0A0B8R4R3 1 202 DBREF1 9TW9 A 1 202 UNP A0A0B8R4R3_LISMN DBREF2 9TW9 A A0A0B8R4R3 1 202 SEQRES 1 B 202 MET THR TYR GLU LEU PRO LYS LEU PRO TYR THR TYR ASP SEQRES 2 B 202 ALA LEU GLU PRO ASN PHE ASP LYS GLU THR MET GLU ILE SEQRES 3 B 202 HIS TYR THR LYS HIS HIS ASN THR TYR VAL THR LYS LEU SEQRES 4 B 202 ASN GLU ALA VAL ALA GLY HIS PRO GLU LEU ALA SER LYS SEQRES 5 B 202 SER VAL GLU GLU LEU VAL ALA ASN LEU ASP SER VAL PRO SEQRES 6 B 202 GLU ASP ILE ARG GLY ALA VAL ARG ASN HIS GLY GLY GLY SEQRES 7 B 202 HIS ALA ASN HIS THR LEU PHE TRP SER ILE LEU SER PRO SEQRES 8 B 202 ASN GLY GLY GLY ALA PRO THR GLY ASN LEU LYS ALA ALA SEQRES 9 B 202 ILE GLU SER GLU PHE GLY THR PHE ASP GLU PHE LYS GLU SEQRES 10 B 202 LYS PHE ASN ALA ALA ALA ALA ALA ARG PHE GLY SER GLY SEQRES 11 B 202 TRP ALA TRP LEU VAL VAL ASN ASP GLY LYS LEU GLU ILE SEQRES 12 B 202 VAL SER THR ALA ASN GLN ASP SER PRO LEU SER ASP GLY SEQRES 13 B 202 LYS THR PRO VAL LEU GLY LEU ASP VAL TRP GLU HIS ALA SEQRES 14 B 202 TYR TYR LEU LYS PHE GLN ASN ARG ARG PRO GLU TYR ILE SEQRES 15 B 202 ASP THR PHE TRP ASN VAL ILE ASN TRP ASP GLU ALA ASN SEQRES 16 B 202 LYS ARG PHE ASP ALA ALA LYS SEQRES 1 A 202 MET THR TYR GLU LEU PRO LYS LEU PRO TYR THR TYR ASP SEQRES 2 A 202 ALA LEU GLU PRO ASN PHE ASP LYS GLU THR MET GLU ILE SEQRES 3 A 202 HIS TYR THR LYS HIS HIS ASN THR TYR VAL THR LYS LEU SEQRES 4 A 202 ASN GLU ALA VAL ALA GLY HIS PRO GLU LEU ALA SER LYS SEQRES 5 A 202 SER VAL GLU GLU LEU VAL ALA ASN LEU ASP SER VAL PRO SEQRES 6 A 202 GLU ASP ILE ARG GLY ALA VAL ARG ASN HIS GLY GLY GLY SEQRES 7 A 202 HIS ALA ASN HIS THR LEU PHE TRP SER ILE LEU SER PRO SEQRES 8 A 202 ASN GLY GLY GLY ALA PRO THR GLY ASN LEU LYS ALA ALA SEQRES 9 A 202 ILE GLU SER GLU PHE GLY THR PHE ASP GLU PHE LYS GLU SEQRES 10 A 202 LYS PHE ASN ALA ALA ALA ALA ALA ARG PHE GLY SER GLY SEQRES 11 A 202 TRP ALA TRP LEU VAL VAL ASN ASP GLY LYS LEU GLU ILE SEQRES 12 A 202 VAL SER THR ALA ASN GLN ASP SER PRO LEU SER ASP GLY SEQRES 13 A 202 LYS THR PRO VAL LEU GLY LEU ASP VAL TRP GLU HIS ALA SEQRES 14 A 202 TYR TYR LEU LYS PHE GLN ASN ARG ARG PRO GLU TYR ILE SEQRES 15 A 202 ASP THR PHE TRP ASN VAL ILE ASN TRP ASP GLU ALA ASN SEQRES 16 A 202 LYS ARG PHE ASP ALA ALA LYS HET FE B 301 1 HET FE A 301 1 HETNAM FE FE (III) ION FORMUL 3 FE 2(FE 3+) FORMUL 5 HOH *398(H2 O) HELIX 1 AA1 ASP B 20 LYS B 30 1 11 HELIX 2 AA2 LYS B 30 ALA B 44 1 15 HELIX 3 AA3 HIS B 46 LYS B 52 5 7 HELIX 4 AA4 SER B 53 ASN B 60 1 8 HELIX 5 AA5 LEU B 61 VAL B 64 5 4 HELIX 6 AA6 ILE B 68 ILE B 88 1 21 HELIX 7 AA7 THR B 98 GLY B 110 1 13 HELIX 8 AA8 THR B 111 ARG B 126 1 16 HELIX 9 AA9 SER B 151 GLY B 156 5 6 HELIX 10 AB1 TRP B 166 ALA B 169 5 4 HELIX 11 AB2 TYR B 170 GLN B 175 1 6 HELIX 12 AB3 ARG B 177 TRP B 186 1 10 HELIX 13 AB4 ASN B 190 ALA B 200 1 11 HELIX 14 AB5 ASP A 20 LYS A 30 1 11 HELIX 15 AB6 LYS A 30 ALA A 44 1 15 HELIX 16 AB7 GLU A 48 LYS A 52 5 5 HELIX 17 AB8 SER A 53 ASN A 60 1 8 HELIX 18 AB9 LEU A 61 VAL A 64 5 4 HELIX 19 AC1 PRO A 65 ILE A 88 1 24 HELIX 20 AC2 THR A 98 GLY A 110 1 13 HELIX 21 AC3 THR A 111 ARG A 126 1 16 HELIX 22 AC4 SER A 151 GLY A 156 5 6 HELIX 23 AC5 TRP A 166 ALA A 169 5 4 HELIX 24 AC6 TYR A 170 GLN A 175 1 6 HELIX 25 AC7 ARG A 177 TRP A 186 1 10 HELIX 26 AC8 ASN A 190 ALA A 201 1 12 SHEET 1 AA1 3 LYS B 140 ALA B 147 0 SHEET 2 AA1 3 GLY B 130 ASN B 137 -1 N VAL B 135 O GLU B 142 SHEET 3 AA1 3 THR B 158 ASP B 164 -1 O VAL B 160 N LEU B 134 SHEET 1 AA2 3 LYS A 140 ALA A 147 0 SHEET 2 AA2 3 GLY A 130 ASN A 137 -1 N ASN A 137 O LYS A 140 SHEET 3 AA2 3 THR A 158 ASP A 164 -1 O VAL A 160 N LEU A 134 LINK NE2 HIS B 27 FE FE B 301 1555 1555 2.13 LINK NE2 HIS B 82 FE FE B 301 1555 1555 2.12 LINK OD2 ASP B 164 FE FE B 301 1555 1555 1.92 LINK NE2 HIS B 168 FE FE B 301 1555 1555 2.14 LINK FE FE B 301 O HOH B 487 1555 1555 1.90 LINK NE2 HIS A 27 FE FE A 301 1555 1555 2.18 LINK NE2 HIS A 82 FE FE A 301 1555 1555 2.08 LINK OD2 ASP A 164 FE FE A 301 1555 1555 1.91 LINK NE2 HIS A 168 FE FE A 301 1555 1555 2.07 LINK FE FE A 301 O HOH A 409 1555 1555 2.34 LINK FE FE A 301 O HOH A 469 1555 1555 2.04 CISPEP 1 GLU B 16 PRO B 17 0 9.52 CRYST1 52.720 94.090 94.520 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010580 0.00000 CONECT 417 6129 CONECT 1219 6129 CONECT 2403 6129 CONECT 2472 6129 CONECT 3481 6130 CONECT 4283 6130 CONECT 5467 6130 CONECT 5536 6130 CONECT 6129 417 1219 2403 2472 CONECT 6129 6217 CONECT 6130 3481 4283 5467 5536 CONECT 6130 6347 6407 CONECT 6217 6129 CONECT 6347 6130 CONECT 6407 6130 MASTER 421 0 2 26 6 0 0 6 3590 2 15 32 END