HEADER LIGASE 16-APR-25 9UIY TITLE PLASMODIUM VIVAX PHENYLALANYL-TRNA SYNTHETASE IN COMPLEX WITH L-PHE IN TITLE 2 SPACE GROUP P43212 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHENYLALANINE TRNA-SYNTHETASE ALPHA SUBUNIT,FRS,PHERS, COMPND 5 PHENYLALANYL-TRNA SYNTHETASE ALPHA SUBUNIT; COMPND 6 EC: 6.1.1.20; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PHENYLALANINE--TRNA LIGASE BETA SUBUNIT; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: PHENYLALANINE TRNA-SYNTHETASE BETA SUBUNIT,FRS,PHERS, COMPND 12 PHENYLALANYL-TRNA SYNTHETASE BETA SUBUNIT; COMPND 13 EC: 6.1.1.20; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: PHENYLALANYL-TRNA SYNTHETASE BETA SUBUNIT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 GENE: PVX_081300; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 10 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 11 ORGANISM_TAXID: 5855; SOURCE 12 GENE: PVX_090880; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOACYLATION, AMINOACYL-TRNA SYNTHETASE, TRNA-BINDING, ATP-BINDING, KEYWDS 2 AUXILIARY POCKET, HETEROTETRAMERIC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MUTHARASAPPAN,Y.MANICKAM,A.SHARMA REVDAT 1 04-NOV-26 9UIY 0 JRNL AUTH N.MUTHARASAPPAN,Y.MANICKAM,A.SHARMA JRNL TITL PLASMODIUM VIVAX PHENYLALANYL-TRNA SYNTHETASE IN COMPLEX JRNL TITL 2 WITH L-PHE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15RC1_3423: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 73.1530 - 6.7617 1.00 2904 150 0.1982 0.2469 REMARK 3 2 6.7617 - 5.3674 1.00 2748 146 0.2184 0.2683 REMARK 3 3 5.3674 - 4.6891 1.00 2707 157 0.1741 0.2731 REMARK 3 4 4.6891 - 4.2604 1.00 2712 125 0.1662 0.2220 REMARK 3 5 4.2604 - 3.9551 1.00 2684 156 0.2072 0.2773 REMARK 3 6 3.9551 - 3.7219 1.00 2673 130 0.2398 0.2954 REMARK 3 7 3.7219 - 3.5355 1.00 2672 133 0.2608 0.2855 REMARK 3 8 3.5355 - 3.3816 1.00 2657 137 0.3024 0.3834 REMARK 3 9 3.3816 - 3.2514 0.94 2512 133 0.3362 0.3983 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6969 REMARK 3 ANGLE : 1.339 9461 REMARK 3 CHIRALITY : 0.069 1066 REMARK 3 PLANARITY : 0.008 1227 REMARK 3 DIHEDRAL : 7.319 4164 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -49.0910 16.5563 -11.9708 REMARK 3 T TENSOR REMARK 3 T11: 0.5521 T22: 0.4894 REMARK 3 T33: 0.5036 T12: 0.0676 REMARK 3 T13: -0.0265 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 1.7122 L22: 0.2331 REMARK 3 L33: 0.7259 L12: 0.3309 REMARK 3 L13: -0.8637 L23: -0.1283 REMARK 3 S TENSOR REMARK 3 S11: 0.1105 S12: 0.0940 S13: -0.0331 REMARK 3 S21: 0.0044 S22: -0.0055 S23: 0.0436 REMARK 3 S31: 0.0684 S32: -0.0120 S33: -0.0533 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9UIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-APR-25. REMARK 100 THE DEPOSITION ID IS D_1300055648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25727 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 146.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 27.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BY6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12%W/V PEG 3350 AND 0.1 M AMMONIUM REMARK 280 TARTARATE DIBASIC PH 7.0 (PEG-ION G5), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.75950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 103.45450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 103.45450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.13925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 103.45450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 103.45450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.37975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 103.45450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 103.45450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.13925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 103.45450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 103.45450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.37975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.75950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.75950 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 267 REMARK 465 ILE A 268 REMARK 465 THR A 269 REMARK 465 ASP A 270 REMARK 465 LEU A 271 REMARK 465 THR A 272 REMARK 465 TYR A 273 REMARK 465 LEU A 274 REMARK 465 LEU A 275 REMARK 465 ILE A 276 REMARK 465 LYS A 277 REMARK 465 ASN A 278 REMARK 465 GLU A 279 REMARK 465 GLU A 280 REMARK 465 TYR A 281 REMARK 465 LYS A 282 REMARK 465 LYS A 283 REMARK 465 TYR A 284 REMARK 465 GLN A 285 REMARK 465 VAL A 286 REMARK 465 LYS A 287 REMARK 465 LYS A 288 REMARK 465 TYR A 289 REMARK 465 ASN A 290 REMARK 465 PHE A 291 REMARK 465 PHE A 292 REMARK 465 SER A 293 REMARK 465 SER A 294 REMARK 465 ARG A 548 REMARK 465 PRO A 549 REMARK 465 THR A 550 REMARK 465 MET A 551 REMARK 465 ILE A 552 REMARK 465 LYS A 553 REMARK 465 TYR A 554 REMARK 465 SER A 555 REMARK 465 ILE A 556 REMARK 465 ARG A 557 REMARK 465 ASN A 558 REMARK 465 ILE A 559 REMARK 465 ARG A 560 REMARK 465 ASP A 561 REMARK 465 LEU A 562 REMARK 465 PHE A 563 REMARK 465 GLY A 564 REMARK 465 TYR A 565 REMARK 465 ARG A 566 REMARK 465 SER A 567 REMARK 465 VAL A 568 REMARK 465 ILE A 569 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 GLN A 346 CG CD OE1 NE2 REMARK 470 SER A 349 OG REMARK 470 ASP A 351 CG OD1 OD2 REMARK 470 LEU A 352 CG CD1 CD2 REMARK 470 GLN A 425 CG CD OE1 NE2 REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 THR A 427 OG1 CG2 REMARK 470 ILE A 430 CG1 CG2 CD1 REMARK 470 SER A 449 OG REMARK 470 LEU A 452 CG CD1 CD2 REMARK 470 LYS A 481 CG CD CE NZ REMARK 470 TYR A 507 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 508 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 509 CG CD OE1 OE2 REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 ASN A 511 CG OD1 ND2 REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 LEU A 515 CG CD1 CD2 REMARK 470 LEU B 11 CG CD1 CD2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 ILE B 19 CG1 CG2 CD1 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ILE B 27 CG1 CG2 CD1 REMARK 470 VAL B 38 CG1 CG2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 TYR B 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 GLU B 43 CG CD OE1 OE2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 SER B 86 OG REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 SER B 102 OG REMARK 470 VAL B 103 CG1 CG2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 ASN B 121 CG OD1 ND2 REMARK 470 ASN B 123 CG OD1 ND2 REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 ASN B 176 CG OD1 ND2 REMARK 470 GLN B 179 CG CD OE1 NE2 REMARK 470 ILE B 194 CG1 CG2 CD1 REMARK 470 LEU B 196 CG CD1 CD2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 SER B 204 OG REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 ILE B 233 CG1 CG2 CD1 REMARK 470 THR B 234 OG1 CG2 REMARK 470 THR B 237 OG1 CG2 REMARK 470 LYS B 282 CG CD CE NZ REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 LYS B 300 CG CD CE NZ REMARK 470 HIS B 305 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 321 CG CD CE NZ REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 ILE B 337 CG1 CG2 CD1 REMARK 470 SER B 340 OG REMARK 470 THR B 341 OG1 CG2 REMARK 470 MET B 354 CE REMARK 470 LYS B 376 CG CD CE NZ REMARK 470 LYS B 381 CG CD CE NZ REMARK 470 LYS B 382 CG CD CE NZ REMARK 470 ILE B 431 CG1 CG2 CD1 REMARK 470 SER B 448 OG REMARK 470 SER B 451 OG REMARK 470 GLU B 452 CG CD OE1 OE2 REMARK 470 LYS B 472 CG CD CE NZ REMARK 470 LYS B 511 CG CD CE NZ REMARK 470 LYS B 528 CG CD CE NZ REMARK 470 LYS B 537 CG CD CE NZ REMARK 470 LYS B 541 CG CD CE NZ REMARK 470 SER B 542 OG REMARK 470 LYS B 543 CG CD CE NZ REMARK 470 ASN B 545 CG OD1 ND2 REMARK 470 VAL B 546 CG1 CG2 REMARK 470 ILE B 548 CG1 CG2 CD1 REMARK 470 GLU B 560 CG CD OE1 OE2 REMARK 470 CME B 575 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 109 CE1 TYR B 109 CZ -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 562 C - N - CA ANGL. DEV. = 12.3 DEGREES REMARK 500 PRO B 562 C - N - CD ANGL. DEV. = -15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 328 57.02 -92.10 REMARK 500 PHE A 338 -57.99 -133.92 REMARK 500 GLU A 367 65.07 -112.20 REMARK 500 SER A 437 141.18 -175.55 REMARK 500 ASP A 464 -159.48 -156.06 REMARK 500 THR A 493 -159.53 -142.81 REMARK 500 LEU A 546 -63.60 -104.87 REMARK 500 LYS B 41 -74.55 -92.86 REMARK 500 LYS B 69 -25.11 -39.63 REMARK 500 ASN B 85 31.55 -82.95 REMARK 500 ARG B 107 68.80 -158.01 REMARK 500 TYR B 153 -32.18 -37.19 REMARK 500 ASN B 185 41.51 -92.60 REMARK 500 PRO B 224 40.87 -99.65 REMARK 500 ILE B 225 -72.37 -99.23 REMARK 500 LYS B 232 14.98 -140.70 REMARK 500 LYS B 288 75.15 44.38 REMARK 500 VAL B 296 -70.80 -84.77 REMARK 500 PHE B 297 54.09 70.14 REMARK 500 LYS B 329 -5.79 -57.76 REMARK 500 ILE B 379 -168.14 -123.30 REMARK 500 ARG B 424 153.04 -43.63 REMARK 500 ILE B 431 106.01 -55.07 REMARK 500 ASN B 471 33.07 -99.15 REMARK 500 GLU B 540 -39.40 -39.85 REMARK 500 ASN B 545 9.32 80.96 REMARK 500 GLU B 567 -12.85 70.24 REMARK 500 ARG B 568 57.10 -112.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 499 OE2 REMARK 620 2 GLU B 361 OE1 71.5 REMARK 620 N 1 DBREF 9UIY A 267 569 UNP A5K9S0 SYFA_PLAVS 267 569 DBREF 9UIY B 2 617 UNP A5K464 SYFB_PLAVS 2 617 SEQADV 9UIY MET B 0 UNP A5K464 INITIATING METHIONINE SEQADV 9UIY GLY B 1 UNP A5K464 EXPRESSION TAG SEQRES 1 A 303 GLN ILE THR ASP LEU THR TYR LEU LEU ILE LYS ASN GLU SEQRES 2 A 303 GLU TYR LYS LYS TYR GLN VAL LYS LYS TYR ASN PHE PHE SEQRES 3 A 303 SER SER GLY LYS LYS MET ASN LYS GLY ASN ILE HIS LEU SEQRES 4 A 303 LEU ILE ARG GLN MET ARG THR PHE LYS ASP VAL PHE VAL SEQRES 5 A 303 SER LEU GLY PHE GLU GLU MET ASN THR HIS ASN TYR VAL SEQRES 6 A 303 GLU SER SER PHE TRP CYS PHE ASP ALA LEU TYR ILE PRO SEQRES 7 A 303 GLN GLN HIS PRO SER ARG ASP LEU GLN ASP THR PHE PHE SEQRES 8 A 303 ILE LYS VAL PRO GLU MET CYS GLN GLU GLU PHE THR ASP SEQRES 9 A 303 GLN SER TYR ILE GLU ASN VAL LYS ARG VAL HIS SER VAL SEQRES 10 A 303 GLY ASP TYR GLY SER PHE GLY TRP ASN TYR GLN TRP GLU SEQRES 11 A 303 LEU LYS SER THR LYS LYS ASN VAL LEU ARG THR HIS THR SEQRES 12 A 303 THR ALA ASN SER CYS ARG ALA LEU PHE GLN LEU ALA LYS SEQRES 13 A 303 GLU TYR GLN LYS THR GLY SER ILE ILE PRO LYS LYS PHE SEQRES 14 A 303 PHE SER ILE ASP ARG VAL PHE ARG ASN GLU ASN LEU ASP SEQRES 15 A 303 SER THR HIS LEU ALA GLU PHE HIS GLN VAL GLU GLY LEU SEQRES 16 A 303 ILE ILE ASP ARG ASN LEU GLY LEU SER HIS LEU ILE GLY SEQRES 17 A 303 THR LEU SER ALA PHE TYR LYS TYR ILE GLY ILE SER LYS SEQRES 18 A 303 LEU ARG PHE LYS PRO THR PHE ASN PRO TYR THR GLU PRO SEQRES 19 A 303 SER MET GLU VAL TYR GLY TYR HIS GLU GLU ASN LYS LYS SEQRES 20 A 303 TRP LEU GLU VAL GLY ASN SER GLY ILE PHE ARG PRO GLU SEQRES 21 A 303 MET LEU ARG ALA MET GLY PHE PRO PRO GLU VAL SER VAL SEQRES 22 A 303 ILE ALA TRP GLY LEU SER LEU GLU ARG PRO THR MET ILE SEQRES 23 A 303 LYS TYR SER ILE ARG ASN ILE ARG ASP LEU PHE GLY TYR SEQRES 24 A 303 ARG SER VAL ILE SEQRES 1 B 618 MET GLY PRO THR ILE SER VAL HIS GLU GLU ASP LEU ILE SEQRES 2 B 618 GLU LYS LEU GLY GLU LYS ILE GLU GLU GLU LYS LEU ASN SEQRES 3 B 618 ASP ILE CYS PHE GLU PHE GLY ILE GLU ILE ASP ASP VAL SEQRES 4 B 618 GLU TYR LYS GLY GLU LYS LYS ILE TYR LYS ILE GLU VAL SEQRES 5 B 618 PRO ALA ASN ARG TYR ASP LEU VAL CYS VAL GLU GLY LEU SEQRES 6 B 618 CYS ARG ALA LEU LYS SER PHE ILE GLY LYS TYR GLU ASN SEQRES 7 B 618 VAL SER TYR ALA LEU LEU THR ASN SER GLU GLU ALA CYS SEQRES 8 B 618 VAL LYS GLU LYS HIS PHE MET ARG VAL ASP GLU SER VAL SEQRES 9 B 618 ASP GLU ARG ARG SER TYR VAL VAL SER ALA VAL LEU LYS SEQRES 10 B 618 ASN VAL LYS MET ASN GLU ASN VAL TYR ASN ASN ILE ILE SEQRES 11 B 618 GLU LEU GLN GLU LYS LEU HIS HIS ASN LEU GLY LYS LYS SEQRES 12 B 618 ARG ILE LEU LEU ALA ILE GLY ILE HIS ASP TYR ASP LYS SEQRES 13 B 618 ILE ASN PHE PRO VAL ALA TYR LYS PHE GLU GLU LYS GLU SEQRES 14 B 618 LYS ILE ASN PHE ILE PRO LEU ASN GLU THR GLN ASN VAL SEQRES 15 B 618 ASN GLY ASN ASN PHE ILE ASN PHE TYR GLN ASP ASN ILE SEQRES 16 B 618 ASN LEU LYS SER TYR LEU LYS ILE ILE SER ASP PHE GLU SEQRES 17 B 618 LYS PHE PRO VAL ILE VAL ASP ALA GLY GLY GLN ILE LEU SEQRES 18 B 618 SER LEU PRO PRO ILE ILE ASN CYS ASP TYR THR LYS ILE SEQRES 19 B 618 THR TYR ASP THR ARG ASN LEU PHE ILE GLU CYS THR ALA SEQRES 20 B 618 ILE ASP ARG ASN LYS ALA GLU ILE ALA VAL ASN ILE ILE SEQRES 21 B 618 CYS SER MET LEU SER GLU TYR CYS THR PRO LYS TYR SER SEQRES 22 B 618 ILE HIS SER PHE PHE VAL GLN TYR ASP LYS ASN HIS LYS SEQRES 23 B 618 ALA GLU LYS GLY ASN GLY TYR LEU TYR PRO VAL PHE LYS SEQRES 24 B 618 ASN LYS THR LEU THR CYS HIS MET ASP TYR VAL ARG LYS SEQRES 25 B 618 LEU SER GLY ILE LEU ASN LEU SER VAL LYS ASP VAL GLU SEQRES 26 B 618 PRO LEU LEU LYS LYS MET MET ILE THR SER LYS VAL ILE SEQRES 27 B 618 ASP SER SER THR PHE THR VAL ASP VAL PRO PHE TYR ARG SEQRES 28 B 618 SER ASP ILE MET HIS PHE CYS ASP ILE VAL GLU ASP ILE SEQRES 29 B 618 ALA ILE ALA TYR GLY TYR GLY ASN ILE VAL SER GLU LYS SEQRES 30 B 618 ILE GLU ILE ALA LYS LYS ASN SER LEU SER ALA CYS THR SEQRES 31 B 618 GLU LEU PHE ARG ASN VAL LEU ALA GLU CYS THR TYR THR SEQRES 32 B 618 GLU VAL MET THR ASN ALA LEU LEU SER LYS ARG GLU ASN SEQRES 33 B 618 TYR ASP CYS MET LEU ARG LYS HIS ARG SER TYR ASP ASP SEQRES 34 B 618 ARG LYS ILE ASN LEU ASP GLU TYR ASN PRO LEU ALA PRO SEQRES 35 B 618 PRO VAL GLN ILE MET ASN SER LYS THR SER GLU TYR GLU SEQRES 36 B 618 ILE VAL ARG THR SER LEU ILE VAL ASN MET LEU LYS PHE SEQRES 37 B 618 VAL SER ALA ASN LYS HIS ARG GLU LEU PRO LEU ARG PHE SEQRES 38 B 618 PHE GLU ILE GLY ASP VAL SER TYR THR THR TYR ASP ARG SEQRES 39 B 618 THR ASP THR ASN ALA VAL ASN LYS ARG TYR LEU SER VAL SEQRES 40 B 618 ILE PHE ALA ASP LYS PHE THR ALA GLY LEU GLU GLU ALA SEQRES 41 B 618 HIS GLY MET LEU GLU THR VAL LEU LYS GLU PHE GLN LEU SEQRES 42 B 618 PHE SER ASP TYR LYS ILE GLU GLU LYS SER LYS GLU ASN SEQRES 43 B 618 VAL ALA ILE ARG SER ASP VAL PHE TYR LYS LEU VAL PRO SEQRES 44 B 618 LYS GLU ASP PRO SER PHE LEU ASN GLU ARG VAL VAL ASP SEQRES 45 B 618 ILE VAL LEU CME PRO HIS ASN LEU LYS PHE GLY ILE MET SEQRES 46 B 618 GLY ILE ILE HIS PRO LYS VAL LEU GLU ASN PHE SER ILE SEQRES 47 B 618 ASP ILE PRO VAL SER VAL ILE GLU ILE ASN ILE GLU THR SEQRES 48 B 618 ILE MET ASP VAL LEU MET MET MODRES 9UIY CME B 575 CYS MODIFIED RESIDUE HET CME B 575 8 HET PHE A 601 12 HET MG B 701 1 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM PHE PHENYLALANINE HETNAM MG MAGNESIUM ION FORMUL 2 CME C5 H11 N O3 S2 FORMUL 3 PHE C9 H11 N O2 FORMUL 4 MG MG 2+ FORMUL 5 HOH *10(H2 O) HELIX 1 AA1 HIS A 304 LEU A 320 1 17 HELIX 2 AA2 SER A 334 PHE A 338 1 5 HELIX 3 AA3 HIS A 347 GLN A 353 5 7 HELIX 4 AA4 ASP A 370 VAL A 383 1 14 HELIX 5 AA5 GLU A 396 LYS A 401 1 6 HELIX 6 AA6 THR A 409 GLY A 428 1 20 HELIX 7 AA7 GLY A 468 ILE A 483 1 16 HELIX 8 AA8 ARG A 524 ARG A 529 1 6 HELIX 9 AA9 GLU B 8 GLY B 16 1 9 HELIX 10 AB1 GLU B 20 GLY B 32 1 13 HELIX 11 AB2 TYR B 56 VAL B 59 5 4 HELIX 12 AB3 CYS B 60 GLY B 73 1 14 HELIX 13 AB4 SER B 86 GLU B 93 1 8 HELIX 14 AB5 ASP B 104 SER B 108 5 5 HELIX 15 AB6 ASN B 121 ASN B 138 1 18 HELIX 16 AB7 ASP B 154 ILE B 156 5 3 HELIX 17 AB8 ASN B 185 GLN B 191 1 7 HELIX 18 AB9 LYS B 197 ILE B 203 5 7 HELIX 19 AC1 ASP B 248 SER B 264 1 17 HELIX 20 AC2 GLU B 265 CYS B 267 5 3 HELIX 21 AC3 MET B 306 GLY B 314 1 9 HELIX 22 AC4 SER B 319 LYS B 329 1 11 HELIX 23 AC5 HIS B 355 GLY B 368 1 14 HELIX 24 AC6 ASN B 383 CYS B 399 1 17 HELIX 25 AC7 SER B 411 TYR B 416 1 6 HELIX 26 AC8 LEU B 460 ASN B 471 1 12 HELIX 27 AC9 GLY B 515 GLU B 529 1 15 HELIX 28 AD1 SER B 534 GLU B 544 1 11 HELIX 29 AD2 HIS B 588 PHE B 595 1 8 HELIX 30 AD3 ILE B 608 ASP B 613 1 6 SHEET 1 AA1 7 GLU A 323 GLU A 324 0 SHEET 2 AA1 7 LYS A 433 PHE A 442 1 O LYS A 434 N GLU A 323 SHEET 3 AA1 7 GLU A 454 ARG A 465 -1 O GLU A 459 N SER A 437 SHEET 4 AA1 7 VAL A 537 SER A 545 -1 O ILE A 540 N ILE A 462 SHEET 5 AA1 7 TRP A 514 PHE A 523 -1 N GLY A 521 O ALA A 541 SHEET 6 AA1 7 THR A 498 TYR A 507 -1 N VAL A 504 O GLY A 518 SHEET 7 AA1 7 LEU A 488 PRO A 492 -1 N ARG A 489 O TYR A 505 SHEET 1 AA2 3 VAL A 331 SER A 333 0 SHEET 2 AA2 3 ASN A 403 LEU A 405 -1 O VAL A 404 N GLU A 332 SHEET 3 AA2 3 PHE A 356 PHE A 357 -1 N PHE A 356 O LEU A 405 SHEET 1 AA3 3 THR B 3 HIS B 7 0 SHEET 2 AA3 3 LYS B 45 GLU B 50 -1 O TYR B 47 N VAL B 6 SHEET 3 AA3 3 GLU B 34 TYR B 40 -1 N ASP B 37 O LYS B 48 SHEET 1 AA4 2 ALA B 81 LEU B 83 0 SHEET 2 AA4 2 SER B 272 HIS B 274 1 O ILE B 273 N ALA B 81 SHEET 1 AA5 7 ILE B 226 ASN B 227 0 SHEET 2 AA5 7 ILE B 219 LEU B 222 -1 N LEU B 222 O ILE B 226 SHEET 3 AA5 7 LYS B 208 VAL B 213 -1 N ILE B 212 O LEU B 220 SHEET 4 AA5 7 VAL B 160 GLU B 166 -1 N ALA B 161 O VAL B 213 SHEET 5 AA5 7 PHE B 96 VAL B 99 1 N PHE B 96 O VAL B 160 SHEET 6 AA5 7 PHE B 276 TYR B 280 1 O PHE B 277 N MET B 97 SHEET 7 AA5 7 GLY B 291 TYR B 294 -1 O TYR B 294 N PHE B 276 SHEET 1 AA6 3 TYR B 109 LEU B 115 0 SHEET 2 AA6 3 LEU B 240 ALA B 246 -1 O ILE B 242 N ALA B 113 SHEET 3 AA6 3 LEU B 146 ASP B 152 -1 N HIS B 151 O PHE B 241 SHEET 1 AA7 2 ASN B 171 PHE B 172 0 SHEET 2 AA7 2 VAL B 181 ASN B 182 -1 O VAL B 181 N PHE B 172 SHEET 1 AA8 3 LYS B 300 HIS B 305 0 SHEET 2 AA8 3 THR B 341 VAL B 346 -1 O VAL B 344 N LEU B 302 SHEET 3 AA8 3 THR B 333 ASP B 338 -1 N LYS B 335 O THR B 343 SHEET 1 AA9 7 THR B 402 GLU B 403 0 SHEET 2 AA9 7 LEU B 478 THR B 489 1 O ARG B 479 N THR B 402 SHEET 3 AA9 7 ALA B 498 ALA B 509 -1 O LYS B 501 N VAL B 486 SHEET 4 AA9 7 VAL B 601 ASN B 607 -1 O ILE B 604 N VAL B 506 SHEET 5 AA9 7 LEU B 579 ILE B 587 -1 N ILE B 583 O GLU B 605 SHEET 6 AA9 7 PHE B 564 CME B 575 -1 N LEU B 574 O LEU B 579 SHEET 7 AA9 7 PHE B 553 PRO B 558 -1 N VAL B 557 O ASP B 571 SHEET 1 AB1 3 LEU B 409 LEU B 410 0 SHEET 2 AB1 3 ILE B 455 VAL B 456 -1 O ILE B 455 N LEU B 410 SHEET 3 AB1 3 VAL B 443 GLN B 444 -1 N VAL B 443 O VAL B 456 LINK C LEU B 574 N CME B 575 1555 1555 1.36 LINK C CME B 575 N PRO B 576 1555 1555 1.34 LINK OE2 GLU A 499 MG MG B 701 1555 1555 2.16 LINK OE1 GLU B 361 MG MG B 701 1555 1555 2.00 CISPEP 1 VAL A 360 PRO A 361 0 -3.33 CISPEP 2 GLU A 499 PRO A 500 0 -4.35 CISPEP 3 PHE B 158 PRO B 159 0 1.20 CISPEP 4 PRO B 223 PRO B 224 0 -0.55 CISPEP 5 THR B 268 PRO B 269 0 8.41 CISPEP 6 TYR B 294 PRO B 295 0 -3.02 CISPEP 7 LEU B 476 PRO B 477 0 -6.22 CISPEP 8 CME B 575 PRO B 576 0 2.33 CRYST1 206.909 206.909 73.519 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013602 0.00000 CONECT 1663 6811 CONECT 4781 6811 CONECT 6452 6458 CONECT 6458 6452 6459 CONECT 6459 6458 6460 6464 CONECT 6460 6459 6461 CONECT 6461 6460 6462 CONECT 6462 6461 6463 CONECT 6463 6462 CONECT 6464 6459 6465 6466 CONECT 6465 6464 CONECT 6466 6464 CONECT 6811 1663 4781 MASTER 485 0 3 30 40 0 0 6 6819 2 13 72 END