HEADER LIGASE 29-APR-25 9UPZ TITLE KCMF1 ZN-COORDINATING DOMAINS WITH RTGG PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE KCMF1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FGF-INDUCED IN GASTRIC CANCER,POTASSIUM CHANNEL MODULATORY COMPND 5 FACTOR,PCMF,ZZ-TYPE ZINC FINGER-CONTAINING PROTEIN 1; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ARG-THR-GLY-GLY; COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KCMF1, FIGC, ZZZ1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS COMPLEX, ZZ-DOMAIN, C2H2 ZN-FINGER DOMAIN, KCMF1, ARG/N-DEGRON KEYWDS 2 PATHWAY, PEPTIDE BINDING PROTEIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.LEE,J.S.SHIN,H.K.SONG REVDAT 2 10-SEP-25 9UPZ 1 JRNL REVDAT 1 27-AUG-25 9UPZ 0 JRNL AUTH D.B.GRABARCZYK,J.F.EHRMANN,P.MURPHY,W.S.YANG,R.KURZBAUER, JRNL AUTH 2 L.E.BELL,L.DESZCZ,J.NEUHOLD,A.SCHLEIFFER,A.SHULKINA,J.LEE, JRNL AUTH 3 J.S.SHIN,A.MEINHART,G.A.VERSTEEG,E.ZAVODSZKY,H.K.SONG, JRNL AUTH 4 R.S.HEGDE,T.CLAUSEN JRNL TITL ARCHITECTURE OF THE UBR4 COMPLEX, A GIANT E4 LIGASE CENTRAL JRNL TITL 2 TO EUKARYOTIC PROTEIN QUALITY CONTROL. JRNL REF SCIENCE V. 389 909 2025 JRNL REFN ESSN 1095-9203 JRNL PMID 40875847 JRNL DOI 10.1126/SCIENCE.ADV9309 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4200 - 3.9300 1.00 1456 162 0.2035 0.2275 REMARK 3 2 3.9200 - 3.1200 1.00 1346 151 0.1983 0.2495 REMARK 3 3 3.1100 - 2.7200 1.00 1328 146 0.2014 0.2209 REMARK 3 4 2.7200 - 2.4700 1.00 1310 146 0.2002 0.1945 REMARK 3 5 2.4700 - 2.3000 1.00 1297 144 0.2029 0.2484 REMARK 3 6 2.3000 - 2.1600 1.00 1294 144 0.2108 0.2160 REMARK 3 7 2.1600 - 2.0500 1.00 1285 143 0.1996 0.2343 REMARK 3 8 2.0500 - 1.9600 1.00 1280 142 0.2014 0.2128 REMARK 3 9 1.9600 - 1.8900 1.00 1273 142 0.2148 0.3160 REMARK 3 10 1.8900 - 1.8200 0.99 1279 141 0.2473 0.2588 REMARK 3 11 1.8200 - 1.7700 0.99 1241 139 0.2432 0.2884 REMARK 3 12 1.7700 - 1.7100 0.99 1283 142 0.2633 0.2971 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.191 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.003 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 978 REMARK 3 ANGLE : 1.170 1322 REMARK 3 CHIRALITY : 0.057 144 REMARK 3 PLANARITY : 0.015 174 REMARK 3 DIHEDRAL : 6.062 141 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9UPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300058640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282590 REMARK 200 MONOCHROMATOR : OUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17490 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 31.20 REMARK 200 R MERGE (I) : 0.16090 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 16.70 REMARK 200 R MERGE FOR SHELL (I) : 2.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (1.20.1_4487) REMARK 200 STARTING MODEL: 9JNI REMARK 200 REMARK 200 REMARK: CUBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.3M CALCIUM CHLORIDE DIHYDRATE, 12.5% MPD, 12.5% PEG1000, 12.5% REMARK 280 PEG 3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.67350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.67350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.67350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.67350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.67350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.67350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 48.67350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 48.67350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 48.67350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 48.67350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 48.67350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 48.67350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 48.67350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 48.67350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 48.67350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 48.67350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 48.67350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 48.67350 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 24.33675 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 73.01025 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 73.01025 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 24.33675 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 24.33675 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 24.33675 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 73.01025 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 73.01025 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 24.33675 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 73.01025 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 24.33675 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 73.01025 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 24.33675 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 73.01025 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 73.01025 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 73.01025 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 24.33675 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 73.01025 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 24.33675 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 24.33675 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 24.33675 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 73.01025 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 73.01025 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 24.33675 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 24.33675 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 73.01025 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 73.01025 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 73.01025 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 73.01025 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 24.33675 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 73.01025 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 24.33675 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 73.01025 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 24.33675 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 24.33675 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 24.33675 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 311 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 331 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 334 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 44 OG1 CG2 REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LEU A 125 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLY D 3 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 43 -166.33 -122.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 12 SG 107.1 REMARK 620 3 CYS A 33 SG 116.2 113.2 REMARK 620 4 CYS A 36 SG 105.4 111.7 103.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 24 SG REMARK 620 2 CYS A 27 SG 119.4 REMARK 620 3 HIS A 46 ND1 107.7 119.6 REMARK 620 4 HIS A 50 ND1 103.5 101.7 101.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 CYS A 66 SG 113.7 REMARK 620 3 HIS A 79 NE2 107.7 111.6 REMARK 620 4 HIS A 84 NE2 104.4 119.6 98.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 CYS A 96 SG 119.2 REMARK 620 3 HIS A 114 NE2 103.2 111.8 REMARK 620 4 HIS A 119 NE2 106.2 110.6 104.7 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9JNI RELATED DB: PDB DBREF 9UPZ A 2 55 UNP Q9P0J7 KCMF1_HUMAN 2 55 DBREF 9UPZ A 60 119 UNP Q9P0J7 KCMF1_HUMAN 77 136 DBREF 9UPZ D 1 3 PDB 9UPZ 9UPZ 1 3 SEQADV 9UPZ GLY A 56 UNP Q9P0J7 LINKER SEQADV 9UPZ GLY A 57 UNP Q9P0J7 LINKER SEQADV 9UPZ GLY A 58 UNP Q9P0J7 LINKER SEQADV 9UPZ GLY A 59 UNP Q9P0J7 LINKER SEQADV 9UPZ GLU A 120 UNP Q9P0J7 EXPRESSION TAG SEQADV 9UPZ LEU A 121 UNP Q9P0J7 EXPRESSION TAG SEQADV 9UPZ ARG A 122 UNP Q9P0J7 EXPRESSION TAG SEQADV 9UPZ ALA A 123 UNP Q9P0J7 EXPRESSION TAG SEQADV 9UPZ ARG A 124 UNP Q9P0J7 EXPRESSION TAG SEQADV 9UPZ LEU A 125 UNP Q9P0J7 EXPRESSION TAG SEQRES 1 A 124 SER ARG HIS GLU GLY VAL SER CYS ASP ALA CYS LEU LYS SEQRES 2 A 124 GLY ASN PHE ARG GLY ARG ARG TYR LYS CYS LEU ILE CYS SEQRES 3 A 124 TYR ASP TYR ASP LEU CYS ALA SER CYS TYR GLU SER GLY SEQRES 4 A 124 ALA THR THR THR ARG HIS THR THR ASP HIS PRO MET GLN SEQRES 5 A 124 CYS ILE GLY GLY GLY GLY SER PHE THR CYS PRO TYR CYS SEQRES 6 A 124 GLY LYS MET GLY TYR THR GLU THR SER LEU GLN GLU HIS SEQRES 7 A 124 VAL THR SER GLU HIS ALA GLU THR SER THR GLU VAL ILE SEQRES 8 A 124 CYS PRO ILE CYS ALA ALA LEU PRO GLY GLY ASP PRO ASN SEQRES 9 A 124 HIS VAL THR ASP ASP PHE ALA ALA HIS LEU THR LEU GLU SEQRES 10 A 124 HIS GLU LEU ARG ALA ARG LEU SEQRES 1 D 3 ARG THR GLY HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *34(H2 O) HELIX 1 AA1 ALA A 34 SER A 39 1 6 HELIX 2 AA2 THR A 72 HIS A 84 1 13 HELIX 3 AA3 CYS A 93 LEU A 99 1 7 HELIX 4 AA4 ASP A 110 HIS A 119 1 10 SHEET 1 AA1 3 ASP A 31 CYS A 33 0 SHEET 2 AA1 3 ARG A 21 CYS A 24 -1 N TYR A 22 O LEU A 32 SHEET 3 AA1 3 MET A 52 ILE A 55 -1 O GLN A 53 N LYS A 23 SHEET 1 AA2 2 VAL A 91 ILE A 92 0 SHEET 2 AA2 2 VAL A 107 THR A 108 -1 O THR A 108 N VAL A 91 LINK SG CYS A 9 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 12 ZN ZN A 201 1555 1555 2.31 LINK SG CYS A 24 ZN ZN A 202 1555 1555 2.29 LINK SG CYS A 27 ZN ZN A 202 1555 1555 2.30 LINK SG CYS A 33 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 36 ZN ZN A 201 1555 1555 2.31 LINK ND1 HIS A 46 ZN ZN A 202 1555 1555 2.07 LINK ND1 HIS A 50 ZN ZN A 202 1555 1555 2.03 LINK SG CYS A 63 ZN ZN A 203 1555 1555 2.30 LINK SG CYS A 66 ZN ZN A 203 1555 1555 2.28 LINK NE2 HIS A 79 ZN ZN A 203 1555 1555 2.08 LINK NE2 HIS A 84 ZN ZN A 203 1555 1555 2.10 LINK SG CYS A 93 ZN ZN A 204 1555 1555 2.33 LINK SG CYS A 96 ZN ZN A 204 1555 1555 2.26 LINK NE2 HIS A 114 ZN ZN A 204 1555 1555 2.04 LINK NE2 HIS A 119 ZN ZN A 204 1555 1555 2.07 CRYST1 97.347 97.347 97.347 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010273 0.00000 TER 1793 LEU A 125 TER 1841 GLY D 3 HETATM 1842 ZN ZN A 201 35.674 -4.069 5.756 1.00 22.15 ZN HETATM 1843 ZN ZN A 202 41.221 7.119 11.514 1.00 21.07 ZN HETATM 1844 ZN ZN A 203 4.336 6.496 -8.603 1.00 23.97 ZN HETATM 1845 ZN ZN A 204 19.315 3.332 -7.686 1.00 21.32 ZN HETATM 1846 O HOH A 301 38.601 9.916 5.900 1.00 19.58 O HETATM 1847 O HOH A 302 35.015 -7.445 8.535 1.00 38.35 O HETATM 1848 O HOH A 303 26.627 -0.598 11.226 1.00 27.53 O HETATM 1849 O HOH A 304 19.595 -2.269 -11.917 1.00 33.17 O HETATM 1850 O HOH A 305 23.002 0.359 -4.704 1.00 28.98 O HETATM 1851 O HOH A 306 28.778 -2.090 5.182 1.00 22.82 O HETATM 1852 O HOH A 307 10.434 -5.361 -3.262 1.00 46.80 O HETATM 1853 O HOH A 308 36.657 8.846 2.080 1.00 21.75 O HETATM 1854 O HOH A 309 28.795 6.664 0.233 1.00 23.51 O HETATM 1855 O HOH A 310 18.971 -0.461 0.259 1.00 34.23 O HETATM 1856 O HOH A 311 31.902 -7.565 12.168 0.50 40.62 O HETATM 1857 O HOH A 312 20.689 8.198 -10.506 1.00 20.40 O HETATM 1858 O HOH A 313 24.949 -1.775 7.671 1.00 26.81 O HETATM 1859 O HOH A 314 31.599 -5.725 -1.908 1.00 33.93 O HETATM 1860 O HOH A 315 26.969 4.973 -3.672 1.00 34.31 O HETATM 1861 O HOH A 316 46.444 2.832 7.520 1.00 37.91 O HETATM 1862 O HOH A 317 19.775 -0.664 3.403 1.00 44.83 O HETATM 1863 O HOH A 318 10.389 13.279 -2.461 1.00 27.45 O HETATM 1864 O HOH A 319 27.501 9.028 12.284 1.00 31.00 O HETATM 1865 O HOH A 320 21.061 -10.388 4.991 1.00 42.48 O HETATM 1866 O HOH A 321 18.392 -0.877 -13.598 1.00 33.52 O HETATM 1867 O HOH A 322 13.659 -3.594 -22.279 1.00 50.35 O HETATM 1868 O HOH A 323 9.260 -0.752 -13.109 1.00 32.80 O HETATM 1869 O HOH A 324 22.181 3.694 -16.641 1.00 29.35 O HETATM 1870 O HOH A 325 29.641 -4.895 6.101 1.00 27.45 O HETATM 1871 O HOH A 326 32.793 5.435 16.672 1.00 28.21 O HETATM 1872 O HOH A 327 29.070 -5.967 0.468 1.00 42.13 O HETATM 1873 O HOH A 328 42.593 1.083 18.424 1.00 34.85 O HETATM 1874 O HOH A 329 2.840 3.102 -14.784 1.00 48.42 O HETATM 1875 O HOH A 330 3.651 3.140 -0.408 1.00 38.94 O HETATM 1876 O HOH A 331 25.441 1.104 -12.168 0.50 36.77 O HETATM 1877 O HOH A 332 34.731 -7.837 5.418 1.00 41.11 O HETATM 1878 O HOH A 333 5.223 1.159 3.079 1.00 31.90 O HETATM 1879 O HOH A 334 3.109 3.109 3.109 0.33 43.33 O CONECT 106 1842 CONECT 138 1842 CONECT 352 1843 CONECT 400 1843 CONECT 495 1842 CONECT 526 1842 CONECT 660 1843 CONECT 717 1843 CONECT 884 1844 CONECT 929 1844 CONECT 1122 1844 CONECT 1195 1844 CONECT 1314 1845 CONECT 1357 1845 CONECT 1589 1845 CONECT 1673 1845 CONECT 1842 106 138 495 526 CONECT 1843 352 400 660 717 CONECT 1844 884 929 1122 1195 CONECT 1845 1314 1357 1589 1673 MASTER 379 0 4 4 5 0 0 6 996 2 20 11 END