data_9URQ # _entry.id 9URQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9URQ pdb_00009urq 10.2210/pdb9urq/pdb WWPDB D_1300058989 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-11-04 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9URQ _pdbx_database_status.recvd_initial_deposition_date 2025-04-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 5 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Luo, Y.' 1 ? 'Chen, X.' 2 ? 'Ren, Y.' 3 ? 'Huang, L.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of adenosine and ATP-binding DNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Luo, Y.' 1 ? primary 'Chen, X.' 2 ? primary 'Ren, Y.' 3 ? primary 'Huang, L.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (26-MER)' 7987.166 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*AP*GP*TP*TP*TP*CP*GP*AP*AP*GP*GP*TP*CP*GP*TP*GP*A)-3') ; 5611.638 1 ? ? ? ? 3 non-polymer syn ADENOSINE 267.241 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 6 water nat water 18.015 117 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DC)(DA)(DC)(DG)(DA)(DC)(DG)(DT)(DT)(DT)(DG)(DC)(DG)(DA)(DT)(DG)(DA)(DG)(DA) (DA)(DA)(DC)(DT)(DC)(DT) ; TCACGACGTTTGCGATGAGAAACTCT A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DG)(DT)(DT)(DT)(DC)(DG)(DA)(DA)(DG)(DG)(DT)(DC)(DG)(DT)(DG)(DA)' GAGTTTCGAAGGTCGTGA B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ADENOSINE ADN 4 'CALCIUM ION' CA 5 'SODIUM ION' NA 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DA n 1 4 DC n 1 5 DG n 1 6 DA n 1 7 DC n 1 8 DG n 1 9 DT n 1 10 DT n 1 11 DT n 1 12 DG n 1 13 DC n 1 14 DG n 1 15 DA n 1 16 DT n 1 17 DG n 1 18 DA n 1 19 DG n 1 20 DA n 1 21 DA n 1 22 DA n 1 23 DC n 1 24 DT n 1 25 DC n 1 26 DT n 2 1 DG n 2 2 DA n 2 3 DG n 2 4 DT n 2 5 DT n 2 6 DT n 2 7 DC n 2 8 DG n 2 9 DA n 2 10 DA n 2 11 DG n 2 12 DG n 2 13 DT n 2 14 DC n 2 15 DG n 2 16 DT n 2 17 DG n 2 18 DA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 26 'synthetic construct' ? 32630 ? 2 1 sample 1 18 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADN non-polymer . ADENOSINE ? 'C10 H13 N5 O4' 267.241 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 0 0 DT DT A . n A 1 2 DC 2 1 1 DC DC A . n A 1 3 DA 3 2 2 DA DA A . n A 1 4 DC 4 3 3 DC DC A . n A 1 5 DG 5 4 4 DG DG A . n A 1 6 DA 6 5 5 DA DA A . n A 1 7 DC 7 6 6 DC DC A . n A 1 8 DG 8 7 7 DG DG A . n A 1 9 DT 9 8 8 DT DT A . n A 1 10 DT 10 9 9 DT DT A . n A 1 11 DT 11 10 10 DT DT A . n A 1 12 DG 12 11 11 DG DG A . n A 1 13 DC 13 12 12 DC DC A . n A 1 14 DG 14 13 13 DG DG A . n A 1 15 DA 15 14 14 DA DA A . n A 1 16 DT 16 15 15 DT DT A . n A 1 17 DG 17 16 16 DG DG A . n A 1 18 DA 18 17 17 DA DA A . n A 1 19 DG 19 18 18 DG DG A . n A 1 20 DA 20 19 19 DA DA A . n A 1 21 DA 21 20 20 DA DA A . n A 1 22 DA 22 21 21 DA DA A . n A 1 23 DC 23 22 22 DC DC A . n A 1 24 DT 24 23 23 DT DT A . n A 1 25 DC 25 24 24 DC DC A . n A 1 26 DT 26 25 25 DT DT A . n B 2 1 DG 1 23 23 DG DG B . n B 2 2 DA 2 24 24 DA DA B . n B 2 3 DG 3 25 25 DG DG B . n B 2 4 DT 4 26 26 DT DT B . n B 2 5 DT 5 27 27 DT DT B . n B 2 6 DT 6 28 28 DT DT B . n B 2 7 DC 7 29 29 DC DC B . n B 2 8 DG 8 30 30 DG DG B . n B 2 9 DA 9 31 31 DA DA B . n B 2 10 DA 10 32 32 DA DA B . n B 2 11 DG 11 33 33 DG DG B . n B 2 12 DG 12 34 34 DG DG B . n B 2 13 DT 13 35 35 DT DT B . n B 2 14 DC 14 36 36 DC DC B . n B 2 15 DG 15 37 37 DG DG B . n B 2 16 DT 16 38 38 DT DT B . n B 2 17 DG 17 39 39 DG DG B . n B 2 18 DA 18 40 40 DA DA B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 ADN ? ? ADN ? ? 'SUBJECT OF INVESTIGATION' ? 2 CA ? ? CA ? ? 'SUBJECT OF INVESTIGATION' ? 3 NA ? ? NA ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADN 1 101 100 ADN ADN A . D 4 CA 1 102 1 CA CA A . E 4 CA 1 103 2 CA CA A . F 4 CA 1 104 5 CA CA A . G 5 NA 1 105 2 NA NA A . H 5 NA 1 106 3 NA NA A . I 5 NA 1 107 4 NA NA A . J 4 CA 1 101 4 CA CA B . K 6 HOH 1 201 25 HOH HOH A . K 6 HOH 2 202 91 HOH HOH A . K 6 HOH 3 203 110 HOH HOH A . K 6 HOH 4 204 38 HOH HOH A . K 6 HOH 5 205 64 HOH HOH A . K 6 HOH 6 206 65 HOH HOH A . K 6 HOH 7 207 77 HOH HOH A . K 6 HOH 8 208 73 HOH HOH A . K 6 HOH 9 209 2 HOH HOH A . K 6 HOH 10 210 8 HOH HOH A . K 6 HOH 11 211 20 HOH HOH A . K 6 HOH 12 212 114 HOH HOH A . K 6 HOH 13 213 87 HOH HOH A . K 6 HOH 14 214 48 HOH HOH A . K 6 HOH 15 215 79 HOH HOH A . K 6 HOH 16 216 81 HOH HOH A . K 6 HOH 17 217 100 HOH HOH A . K 6 HOH 18 218 5 HOH HOH A . K 6 HOH 19 219 37 HOH HOH A . K 6 HOH 20 220 33 HOH HOH A . K 6 HOH 21 221 23 HOH HOH A . K 6 HOH 22 222 82 HOH HOH A . K 6 HOH 23 223 39 HOH HOH A . K 6 HOH 24 224 6 HOH HOH A . K 6 HOH 25 225 10 HOH HOH A . K 6 HOH 26 226 1 HOH HOH A . K 6 HOH 27 227 112 HOH HOH A . K 6 HOH 28 228 14 HOH HOH A . K 6 HOH 29 229 59 HOH HOH A . K 6 HOH 30 230 56 HOH HOH A . K 6 HOH 31 231 3 HOH HOH A . K 6 HOH 32 232 9 HOH HOH A . K 6 HOH 33 233 76 HOH HOH A . K 6 HOH 34 234 12 HOH HOH A . K 6 HOH 35 235 17 HOH HOH A . K 6 HOH 36 236 36 HOH HOH A . K 6 HOH 37 237 24 HOH HOH A . K 6 HOH 38 238 51 HOH HOH A . K 6 HOH 39 239 115 HOH HOH A . K 6 HOH 40 240 19 HOH HOH A . K 6 HOH 41 241 54 HOH HOH A . K 6 HOH 42 242 105 HOH HOH A . K 6 HOH 43 243 63 HOH HOH A . K 6 HOH 44 244 31 HOH HOH A . K 6 HOH 45 245 18 HOH HOH A . K 6 HOH 46 246 13 HOH HOH A . K 6 HOH 47 247 27 HOH HOH A . K 6 HOH 48 248 52 HOH HOH A . K 6 HOH 49 249 58 HOH HOH A . K 6 HOH 50 250 78 HOH HOH A . K 6 HOH 51 251 101 HOH HOH A . K 6 HOH 52 252 98 HOH HOH A . K 6 HOH 53 253 43 HOH HOH A . K 6 HOH 54 254 84 HOH HOH A . K 6 HOH 55 255 55 HOH HOH A . K 6 HOH 56 256 107 HOH HOH A . K 6 HOH 57 257 7 HOH HOH A . K 6 HOH 58 258 4 HOH HOH A . K 6 HOH 59 259 70 HOH HOH A . K 6 HOH 60 260 106 HOH HOH A . K 6 HOH 61 261 62 HOH HOH A . K 6 HOH 62 262 97 HOH HOH A . K 6 HOH 63 263 44 HOH HOH A . K 6 HOH 64 264 11 HOH HOH A . K 6 HOH 65 265 111 HOH HOH A . K 6 HOH 66 266 28 HOH HOH A . K 6 HOH 67 267 116 HOH HOH A . K 6 HOH 68 268 30 HOH HOH A . K 6 HOH 69 269 68 HOH HOH A . K 6 HOH 70 270 60 HOH HOH A . K 6 HOH 71 271 57 HOH HOH A . K 6 HOH 72 272 47 HOH HOH A . K 6 HOH 73 273 22 HOH HOH A . K 6 HOH 74 274 109 HOH HOH A . K 6 HOH 75 275 50 HOH HOH A . K 6 HOH 76 276 99 HOH HOH A . K 6 HOH 77 277 90 HOH HOH A . K 6 HOH 78 278 34 HOH HOH A . K 6 HOH 79 279 46 HOH HOH A . K 6 HOH 80 280 117 HOH HOH A . K 6 HOH 81 281 75 HOH HOH A . K 6 HOH 82 282 102 HOH HOH A . L 6 HOH 1 201 92 HOH HOH B . L 6 HOH 2 202 103 HOH HOH B . L 6 HOH 3 203 69 HOH HOH B . L 6 HOH 4 204 85 HOH HOH B . L 6 HOH 5 205 93 HOH HOH B . L 6 HOH 6 206 53 HOH HOH B . L 6 HOH 7 207 42 HOH HOH B . L 6 HOH 8 208 26 HOH HOH B . L 6 HOH 9 209 66 HOH HOH B . L 6 HOH 10 210 74 HOH HOH B . L 6 HOH 11 211 89 HOH HOH B . L 6 HOH 12 212 94 HOH HOH B . L 6 HOH 13 213 15 HOH HOH B . L 6 HOH 14 214 45 HOH HOH B . L 6 HOH 15 215 40 HOH HOH B . L 6 HOH 16 216 86 HOH HOH B . L 6 HOH 17 217 83 HOH HOH B . L 6 HOH 18 218 35 HOH HOH B . L 6 HOH 19 219 49 HOH HOH B . L 6 HOH 20 220 21 HOH HOH B . L 6 HOH 21 221 95 HOH HOH B . L 6 HOH 22 222 16 HOH HOH B . L 6 HOH 23 223 71 HOH HOH B . L 6 HOH 24 224 61 HOH HOH B . L 6 HOH 25 225 113 HOH HOH B . L 6 HOH 26 226 80 HOH HOH B . L 6 HOH 27 227 29 HOH HOH B . L 6 HOH 28 228 88 HOH HOH B . L 6 HOH 29 229 72 HOH HOH B . L 6 HOH 30 230 41 HOH HOH B . L 6 HOH 31 231 108 HOH HOH B . L 6 HOH 32 232 104 HOH HOH B . L 6 HOH 33 233 32 HOH HOH B . L 6 HOH 34 234 96 HOH HOH B . L 6 HOH 35 235 67 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DT 25 ? "C5'" ? A DT 26 "C5'" 2 1 Y 1 A DT 25 ? "C4'" ? A DT 26 "C4'" 3 1 Y 1 A DT 25 ? "O4'" ? A DT 26 "O4'" 4 1 Y 1 A DT 25 ? "C3'" ? A DT 26 "C3'" 5 1 Y 1 A DT 25 ? "O3'" ? A DT 26 "O3'" 6 1 Y 1 A DT 25 ? "C2'" ? A DT 26 "C2'" 7 1 Y 1 A DT 25 ? "C1'" ? A DT 26 "C1'" 8 1 Y 1 A DT 25 ? N1 ? A DT 26 N1 9 1 Y 1 A DT 25 ? C2 ? A DT 26 C2 10 1 Y 1 A DT 25 ? O2 ? A DT 26 O2 11 1 Y 1 A DT 25 ? N3 ? A DT 26 N3 12 1 Y 1 A DT 25 ? C4 ? A DT 26 C4 13 1 Y 1 A DT 25 ? O4 ? A DT 26 O4 14 1 Y 1 A DT 25 ? C5 ? A DT 26 C5 15 1 Y 1 A DT 25 ? C7 ? A DT 26 C7 16 1 Y 1 A DT 25 ? C6 ? A DT 26 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 ? 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . ? 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . ? 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9URQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 27.280 _cell.length_a_esd ? _cell.length_b 37.500 _cell.length_b_esd ? _cell.length_c 121.660 _cell.length_c_esd ? _cell.volume 124458.180 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9URQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9URQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M Calcium chloride dihydrate, 0.05 M HEPES sodium pH 7.6, 34% v/v Polyethylene glycol 400, 0.002 M Spermine ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-01-05 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979176 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL10U2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979176 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL10U2 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 22.34 _reflns.entry_id 9URQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.38 _reflns.d_resolution_low 27.53 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 26652 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.500 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.38 _reflns_shell.d_res_low 1.42 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1925 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.570 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.697 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.974 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 48.47 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9URQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.38 _refine.ls_d_res_low 22.64 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 26552 _refine.ls_number_reflns_R_free 1333 _refine.ls_number_reflns_R_work 25219 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.83 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2019 _refine.ls_R_factor_R_free 0.2158 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2011 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.2003 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2082 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.38 _refine_hist.d_res_low 22.64 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 1030 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 887 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0143 ? 1016 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.4249 ? 1566 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0766 ? 175 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0165 ? 44 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 33.3560 ? 424 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.38 1.43 . . 145 2462 99.96 . . . . 0.3692 . . . . . . . . . . . . . . . 0.4121 'X-RAY DIFFRACTION' 1.43 1.49 . . 145 2454 100.00 . . . . 0.3202 . . . . . . . . . . . . . . . 0.3313 'X-RAY DIFFRACTION' 1.49 1.55 . . 131 2489 99.96 . . . . 0.2801 . . . . . . . . . . . . . . . 0.2736 'X-RAY DIFFRACTION' 1.55 1.64 . . 113 2495 100.00 . . . . 0.2426 . . . . . . . . . . . . . . . 0.2795 'X-RAY DIFFRACTION' 1.64 1.74 . . 125 2507 99.96 . . . . 0.2347 . . . . . . . . . . . . . . . 0.2955 'X-RAY DIFFRACTION' 1.74 1.87 . . 128 2499 99.77 . . . . 0.2081 . . . . . . . . . . . . . . . 0.2336 'X-RAY DIFFRACTION' 1.87 2.06 . . 125 2514 99.77 . . . . 0.1965 . . . . . . . . . . . . . . . 0.2148 'X-RAY DIFFRACTION' 2.06 2.36 . . 121 2571 99.89 . . . . 0.2067 . . . . . . . . . . . . . . . 0.2107 'X-RAY DIFFRACTION' 2.36 2.97 . . 148 2545 99.96 . . . . 0.2244 . . . . . . . . . . . . . . . 0.2511 'X-RAY DIFFRACTION' 2.97 22.64 . . 152 2683 99.13 . . . . 0.1717 . . . . . . . . . . . . . . . 0.1791 # _struct.entry_id 9URQ _struct.title 'Crystal structure of Ade1301 DNA aptamer (two strands) bound to adenosine at 1.38 angstrom' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9URQ _struct_keywords.text 'Adenosine/ATP DNA aptamer, ADO, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 4 ? K N N 6 ? L N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9URQ 9URQ ? 1 ? 1 2 PDB 9URQ 9URQ ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9URQ A 1 ? 26 ? 9URQ 0 ? 25 ? 0 25 2 2 9URQ B 1 ? 18 ? 9URQ 23 ? 40 ? 23 40 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3490 ? 1 MORE -47 ? 1 'SSA (A^2)' 7570 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DT 9 O4 ? ? ? 1_555 D CA . CA ? ? A DT 8 A CA 102 1_555 ? ? ? ? ? ? ? 2.432 ? ? metalc2 metalc ? ? A DT 11 OP1 ? ? ? 1_555 I NA . NA ? ? A DT 10 A NA 107 1_555 ? ? ? ? ? ? ? 2.629 ? ? metalc3 metalc ? ? A DG 12 O6 ? ? ? 1_555 I NA . NA ? ? A DG 11 A NA 107 4_455 ? ? ? ? ? ? ? 3.011 ? ? metalc4 metalc ? ? A DG 17 OP1 ? ? ? 1_555 E CA . CA ? ? A DG 16 A CA 103 4_555 ? ? ? ? ? ? ? 2.342 ? ? metalc5 metalc ? ? A DG 17 OP1 ? ? ? 1_555 G NA . NA ? ? A DG 16 A NA 105 4_555 ? ? ? ? ? ? ? 2.868 ? ? metalc6 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 209 1_555 ? ? ? ? ? ? ? 2.504 ? ? metalc7 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 232 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc8 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 243 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc9 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 244 1_555 ? ? ? ? ? ? ? 2.517 ? ? metalc10 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 257 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc11 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 258 1_555 ? ? ? ? ? ? ? 2.422 ? ? metalc12 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 224 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc13 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 225 4_455 ? ? ? ? ? ? ? 2.305 ? ? metalc14 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 264 4_455 ? ? ? ? ? ? ? 2.267 ? ? metalc15 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 266 4_455 ? ? ? ? ? ? ? 2.390 ? ? metalc16 metalc ? ? E CA . CA ? ? ? 1_555 L HOH . O ? ? A CA 103 B HOH 220 1_555 ? ? ? ? ? ? ? 2.198 ? ? metalc17 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 218 1_555 ? ? ? ? ? ? ? 2.495 ? ? metalc18 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 226 4_555 ? ? ? ? ? ? ? 2.360 ? ? metalc19 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 227 1_555 ? ? ? ? ? ? ? 3.012 ? ? metalc20 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 228 1_555 ? ? ? ? ? ? ? 2.440 ? ? metalc21 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 231 1_555 ? ? ? ? ? ? ? 2.474 ? ? metalc22 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 246 1_555 ? ? ? ? ? ? ? 2.486 ? ? metalc23 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 273 1_555 ? ? ? ? ? ? ? 2.344 ? ? metalc24 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 278 1_555 ? ? ? ? ? ? ? 3.102 ? ? metalc25 metalc ? ? G NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 105 A HOH 226 1_555 ? ? ? ? ? ? ? 2.904 ? ? metalc26 metalc ? ? G NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 105 A HOH 278 4_455 ? ? ? ? ? ? ? 2.684 ? ? metalc27 metalc ? ? H NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 106 A HOH 237 4_455 ? ? ? ? ? ? ? 2.809 ? ? metalc28 metalc ? ? H NA . NA ? ? ? 1_555 L HOH . O ? ? A NA 106 B HOH 222 1_555 ? ? ? ? ? ? ? 2.714 ? ? metalc29 metalc ? ? I NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 107 A HOH 247 4_555 ? ? ? ? ? ? ? 2.786 ? ? metalc30 metalc ? ? K HOH . O ? ? ? 1_555 J CA . CA ? ? A HOH 245 B CA 101 1_555 ? ? ? ? ? ? ? 2.399 ? ? metalc31 metalc ? ? K HOH . O ? ? ? 4_455 J CA . CA ? ? A HOH 249 B CA 101 1_555 ? ? ? ? ? ? ? 2.902 ? ? metalc32 metalc ? ? K HOH . O ? ? ? 1_555 J CA . CA ? ? A HOH 268 B CA 101 1_555 ? ? ? ? ? ? ? 2.374 ? ? metalc33 metalc ? ? K HOH . O ? ? ? 4_455 J CA . CA ? ? A HOH 271 B CA 101 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc34 metalc ? ? J CA . CA ? ? ? 1_555 L HOH . O ? ? B CA 101 B HOH 213 1_555 ? ? ? ? ? ? ? 2.298 ? ? metalc35 metalc ? ? J CA . CA ? ? ? 1_555 L HOH . O ? ? B CA 101 B HOH 227 1_555 ? ? ? ? ? ? ? 3.193 ? ? metalc36 metalc ? ? J CA . CA ? ? ? 1_555 L HOH . O ? ? B CA 101 B HOH 229 1_555 ? ? ? ? ? ? ? 2.459 ? ? metalc37 metalc ? ? J CA . CA ? ? ? 1_555 L HOH . O ? ? B CA 101 B HOH 233 1_555 ? ? ? ? ? ? ? 2.350 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 18 N1 ? ? A DT 0 B DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 18 N6 ? ? A DT 0 B DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 17 N1 ? ? A DC 1 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 17 O6 ? ? A DC 1 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 17 N2 ? ? A DC 1 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 16 N3 ? ? A DA 2 B DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 16 O4 ? ? A DA 2 B DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 15 N1 ? ? A DC 3 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 15 O6 ? ? A DC 3 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 15 N2 ? ? A DC 3 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 14 N3 ? ? A DG 4 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 14 O2 ? ? A DG 4 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 14 N4 ? ? A DG 4 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 13 N3 ? ? A DA 5 B DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 13 O4 ? ? A DA 5 B DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 6 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 6 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 6 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 12 N7 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 12 O6 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 9 B DA 31 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog22 hydrog ? ? A DT 10 O2 ? ? ? 1_555 B DA 9 N6 ? ? A DT 9 B DA 31 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog23 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 10 B DA 32 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog24 hydrog ? ? A DT 11 O2 ? ? ? 1_555 B DA 10 N6 ? ? A DT 10 B DA 32 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog25 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DG 11 N3 ? ? A DG 11 B DG 33 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog26 hydrog ? ? A DG 12 N3 ? ? ? 1_555 B DG 11 N2 ? ? A DG 11 B DG 33 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog27 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 12 N7 ? ? A DC 12 B DG 34 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog28 hydrog ? ? A DG 14 N7 ? ? ? 1_555 B DG 11 N1 ? ? A DG 13 B DG 33 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog29 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DG 11 N2 ? ? A DG 13 B DG 33 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog30 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DA 10 N6 ? ? A DA 14 B DA 32 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog31 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DA 10 N7 ? ? A DA 14 B DA 32 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog32 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 9 N7 ? ? A DT 15 B DA 31 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog33 hydrog ? ? A DT 16 O2 ? ? ? 1_555 B DA 9 N6 ? ? A DT 15 B DA 31 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog34 hydrog ? ? A DA 18 N6 ? ? ? 1_555 B DG 8 N3 ? ? A DA 17 B DG 30 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog35 hydrog ? ? A DA 18 N7 ? ? ? 1_555 B DG 8 N2 ? ? A DA 17 B DG 30 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog36 hydrog ? ? A DG 19 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 18 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 19 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 18 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 19 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 18 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DA 20 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 19 B DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DA 20 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 19 B DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 20 B DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 20 B DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DA 22 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 21 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DA 22 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 21 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 23 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 22 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DC 23 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 22 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DC 23 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 22 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DT 24 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 23 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DT 24 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 23 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DC 25 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 24 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DC 25 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 24 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DC 25 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 24 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 209 ? 1_555 87.1 ? 2 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 232 ? 1_555 72.6 ? 3 O ? K HOH . ? A HOH 209 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 232 ? 1_555 77.8 ? 4 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 243 ? 1_555 155.0 ? 5 O ? K HOH . ? A HOH 209 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 243 ? 1_555 77.8 ? 6 O ? K HOH . ? A HOH 232 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 243 ? 1_555 122.2 ? 7 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 244 ? 1_555 130.4 ? 8 O ? K HOH . ? A HOH 209 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 244 ? 1_555 121.0 ? 9 O ? K HOH . ? A HOH 232 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 244 ? 1_555 74.8 ? 10 O ? K HOH . ? A HOH 243 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 244 ? 1_555 74.6 ? 11 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 257 ? 1_555 77.9 ? 12 O ? K HOH . ? A HOH 209 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 257 ? 1_555 164.2 ? 13 O ? K HOH . ? A HOH 232 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 257 ? 1_555 101.9 ? 14 O ? K HOH . ? A HOH 243 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 257 ? 1_555 114.4 ? 15 O ? K HOH . ? A HOH 244 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 257 ? 1_555 73.4 ? 16 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 258 ? 1_555 78.1 ? 17 O ? K HOH . ? A HOH 209 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 258 ? 1_555 80.2 ? 18 O ? K HOH . ? A HOH 232 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 258 ? 1_555 144.0 ? 19 O ? K HOH . ? A HOH 243 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 258 ? 1_555 79.7 ? 20 O ? K HOH . ? A HOH 244 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 258 ? 1_555 141.2 ? 21 O ? K HOH . ? A HOH 257 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 258 ? 1_555 91.8 ? 22 OP1 ? A DT 11 ? A DT 10 ? 1_555 NA ? I NA . ? A NA 107 ? 1_555 O6 ? A DG 12 ? A DG 11 ? 1_555 17.1 ? 23 OP1 ? A DT 11 ? A DT 10 ? 1_555 NA ? I NA . ? A NA 107 ? 1_555 O ? K HOH . ? A HOH 247 ? 4_555 95.5 ? 24 O6 ? A DG 12 ? A DG 11 ? 1_555 NA ? I NA . ? A NA 107 ? 1_555 O ? K HOH . ? A HOH 247 ? 4_555 79.1 ? 25 OP1 ? A DG 17 ? A DG 16 ? 1_555 CA ? E CA . ? A CA 103 ? 4_555 O ? K HOH . ? A HOH 224 ? 1_555 78.2 ? 26 OP1 ? A DG 17 ? A DG 16 ? 1_555 CA ? E CA . ? A CA 103 ? 4_555 O ? K HOH . ? A HOH 225 ? 4_455 78.8 ? 27 O ? K HOH . ? A HOH 224 ? 1_555 CA ? E CA . ? A CA 103 ? 4_555 O ? K HOH . ? A HOH 225 ? 4_455 1.1 ? 28 OP1 ? A DG 17 ? A DG 16 ? 1_555 CA ? E CA . ? A CA 103 ? 4_555 O ? K HOH . ? A HOH 264 ? 4_455 78.3 ? 29 O ? K HOH . ? A HOH 224 ? 1_555 CA ? E CA . ? A CA 103 ? 4_555 O ? K HOH . ? A HOH 264 ? 4_455 5.6 ? 30 O ? K HOH . ? A HOH 225 ? 4_455 CA ? E CA . ? A CA 103 ? 4_555 O ? K HOH . ? A HOH 264 ? 4_455 4.6 ? 31 OP1 ? A DG 17 ? A DG 16 ? 1_555 CA ? E CA . ? A CA 103 ? 4_555 O ? K HOH . ? A HOH 266 ? 4_455 78.7 ? 32 O ? K HOH . ? A HOH 224 ? 1_555 CA ? E CA . ? A CA 103 ? 4_555 O ? K HOH . ? A HOH 266 ? 4_455 5.1 ? 33 O ? K HOH . ? A HOH 225 ? 4_455 CA ? E CA . ? A CA 103 ? 4_555 O ? K HOH . ? A HOH 266 ? 4_455 6.1 ? 34 O ? K HOH . ? A HOH 264 ? 4_455 CA ? E CA . ? A CA 103 ? 4_555 O ? K HOH . ? A HOH 266 ? 4_455 10.7 ? 35 OP1 ? A DG 17 ? A DG 16 ? 1_555 CA ? E CA . ? A CA 103 ? 4_555 O ? L HOH . ? B HOH 220 ? 1_555 73.5 ? 36 O ? K HOH . ? A HOH 224 ? 1_555 CA ? E CA . ? A CA 103 ? 4_555 O ? L HOH . ? B HOH 220 ? 1_555 4.7 ? 37 O ? K HOH . ? A HOH 225 ? 4_455 CA ? E CA . ? A CA 103 ? 4_555 O ? L HOH . ? B HOH 220 ? 1_555 5.4 ? 38 O ? K HOH . ? A HOH 264 ? 4_455 CA ? E CA . ? A CA 103 ? 4_555 O ? L HOH . ? B HOH 220 ? 1_555 7.6 ? 39 O ? K HOH . ? A HOH 266 ? 4_455 CA ? E CA . ? A CA 103 ? 4_555 O ? L HOH . ? B HOH 220 ? 1_555 7.0 ? 40 OP1 ? A DG 17 ? A DG 16 ? 1_555 NA ? G NA . ? A NA 105 ? 4_555 O ? K HOH . ? A HOH 226 ? 1_555 140.0 ? 41 OP1 ? A DG 17 ? A DG 16 ? 1_555 NA ? G NA . ? A NA 105 ? 4_555 O ? K HOH . ? A HOH 278 ? 4_455 141.0 ? 42 O ? K HOH . ? A HOH 226 ? 1_555 NA ? G NA . ? A NA 105 ? 4_555 O ? K HOH . ? A HOH 278 ? 4_455 8.4 ? 43 O ? K HOH . ? A HOH 218 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 226 ? 4_555 90.5 ? 44 O ? K HOH . ? A HOH 218 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 227 ? 1_555 151.1 ? 45 O ? K HOH . ? A HOH 226 ? 4_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 227 ? 1_555 98.2 ? 46 O ? K HOH . ? A HOH 218 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 228 ? 1_555 91.1 ? 47 O ? K HOH . ? A HOH 226 ? 4_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 228 ? 1_555 157.6 ? 48 O ? K HOH . ? A HOH 227 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 228 ? 1_555 70.8 ? 49 O ? K HOH . ? A HOH 218 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 231 ? 1_555 78.8 ? 50 O ? K HOH . ? A HOH 226 ? 4_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 231 ? 1_555 75.2 ? 51 O ? K HOH . ? A HOH 227 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 231 ? 1_555 76.9 ? 52 O ? K HOH . ? A HOH 228 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 231 ? 1_555 83.2 ? 53 O ? K HOH . ? A HOH 218 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 246 ? 1_555 76.4 ? 54 O ? K HOH . ? A HOH 226 ? 4_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 246 ? 1_555 131.4 ? 55 O ? K HOH . ? A HOH 227 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 246 ? 1_555 115.8 ? 56 O ? K HOH . ? A HOH 228 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 246 ? 1_555 70.5 ? 57 O ? K HOH . ? A HOH 231 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 246 ? 1_555 143.1 ? 58 O ? K HOH . ? A HOH 218 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 273 ? 1_555 145.0 ? 59 O ? K HOH . ? A HOH 226 ? 4_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 273 ? 1_555 81.4 ? 60 O ? K HOH . ? A HOH 227 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 273 ? 1_555 63.8 ? 61 O ? K HOH . ? A HOH 228 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 273 ? 1_555 109.1 ? 62 O ? K HOH . ? A HOH 231 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 273 ? 1_555 130.4 ? 63 O ? K HOH . ? A HOH 246 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 273 ? 1_555 83.7 ? 64 O ? K HOH . ? A HOH 218 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 63.2 ? 65 O ? K HOH . ? A HOH 226 ? 4_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 67.6 ? 66 O ? K HOH . ? A HOH 227 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 145.4 ? 67 O ? K HOH . ? A HOH 228 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 132.1 ? 68 O ? K HOH . ? A HOH 231 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 125.2 ? 69 O ? K HOH . ? A HOH 246 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 64.7 ? 70 O ? K HOH . ? A HOH 273 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 278 ? 1_555 82.4 ? 71 O ? K HOH . ? A HOH 237 ? 4_455 NA ? H NA . ? A NA 106 ? 1_555 O ? L HOH . ? B HOH 222 ? 1_555 93.1 ? 72 O ? K HOH . ? A HOH 245 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? K HOH . ? A HOH 249 ? 4_455 144.4 ? 73 O ? K HOH . ? A HOH 245 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? K HOH . ? A HOH 268 ? 1_555 75.7 ? 74 O ? K HOH . ? A HOH 249 ? 4_455 CA ? J CA . ? B CA 101 ? 1_555 O ? K HOH . ? A HOH 268 ? 1_555 72.8 ? 75 O ? K HOH . ? A HOH 245 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? K HOH . ? A HOH 271 ? 4_455 93.8 ? 76 O ? K HOH . ? A HOH 249 ? 4_455 CA ? J CA . ? B CA 101 ? 1_555 O ? K HOH . ? A HOH 271 ? 4_455 74.2 ? 77 O ? K HOH . ? A HOH 268 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? K HOH . ? A HOH 271 ? 4_455 97.0 ? 78 O ? K HOH . ? A HOH 245 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 213 ? 1_555 78.4 ? 79 O ? K HOH . ? A HOH 249 ? 4_455 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 213 ? 1_555 115.4 ? 80 O ? K HOH . ? A HOH 268 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 213 ? 1_555 86.5 ? 81 O ? K HOH . ? A HOH 271 ? 4_455 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 213 ? 1_555 170.4 ? 82 O ? K HOH . ? A HOH 245 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 227 ? 1_555 131.7 ? 83 O ? K HOH . ? A HOH 249 ? 4_455 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 227 ? 1_555 49.4 ? 84 O ? K HOH . ? A HOH 268 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 227 ? 1_555 70.8 ? 85 O ? K HOH . ? A HOH 271 ? 4_455 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 227 ? 1_555 123.6 ? 86 O ? L HOH . ? B HOH 213 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 227 ? 1_555 65.9 ? 87 O ? K HOH . ? A HOH 245 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 229 ? 1_555 70.9 ? 88 O ? K HOH . ? A HOH 249 ? 4_455 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 229 ? 1_555 139.4 ? 89 O ? K HOH . ? A HOH 268 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 229 ? 1_555 146.6 ? 90 O ? K HOH . ? A HOH 271 ? 4_455 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 229 ? 1_555 87.4 ? 91 O ? L HOH . ? B HOH 213 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 229 ? 1_555 84.8 ? 92 O ? L HOH . ? B HOH 227 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 229 ? 1_555 132.7 ? 93 O ? K HOH . ? A HOH 245 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 233 ? 1_555 144.1 ? 94 O ? K HOH . ? A HOH 249 ? 4_455 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 233 ? 1_555 69.9 ? 95 O ? K HOH . ? A HOH 268 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 233 ? 1_555 139.9 ? 96 O ? K HOH . ? A HOH 271 ? 4_455 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 233 ? 1_555 86.8 ? 97 O ? L HOH . ? B HOH 213 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 233 ? 1_555 96.3 ? 98 O ? L HOH . ? B HOH 227 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 233 ? 1_555 74.0 ? 99 O ? L HOH . ? B HOH 229 ? 1_555 CA ? J CA . ? B CA 101 ? 1_555 O ? L HOH . ? B HOH 233 ? 1_555 73.2 ? # _pdbx_entry_details.entry_id 9URQ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 A DG 11 ? ? O A HOH 201 ? ? 2.04 2 1 OP2 A DT 9 ? ? O A HOH 202 ? ? 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DA 5 ? ? "C3'" A DA 5 ? ? 1.363 1.419 -0.056 0.006 N 2 1 C5 A DT 9 ? ? C7 A DT 9 ? ? 1.543 1.496 0.047 0.006 N 3 1 C4 A DG 11 ? ? C5 A DG 11 ? ? 1.336 1.379 -0.043 0.007 N 4 1 C6 A DG 11 ? ? N1 A DG 11 ? ? 1.436 1.391 0.045 0.007 N 5 1 N3 A DG 16 ? ? C4 A DG 16 ? ? 1.286 1.350 -0.064 0.007 N 6 1 C2 A DG 16 ? ? N2 A DG 16 ? ? 1.270 1.341 -0.071 0.010 N 7 1 N9 B DA 32 ? ? C4 B DA 32 ? ? 1.414 1.374 0.040 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.71 108.30 2.41 0.30 N 2 1 "O3'" A DA 5 ? ? P A DC 6 ? ? OP2 A DC 6 ? ? 119.11 110.50 8.61 1.10 Y 3 1 C4 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 108.13 110.80 -2.67 0.40 N 4 1 N9 A DG 7 ? ? C4 A DG 7 ? ? C5 A DG 7 ? ? 107.82 105.40 2.42 0.40 N 5 1 C5 A DT 9 ? ? C4 A DT 9 ? ? O4 A DT 9 ? ? 120.34 124.90 -4.56 0.70 N 6 1 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.30 108.30 2.00 0.30 N 7 1 "O4'" B DG 30 ? ? "C1'" B DG 30 ? ? N9 B DG 30 ? ? 110.11 108.30 1.81 0.30 N 8 1 "O4'" B DG 33 ? ? "C1'" B DG 33 ? ? N9 B DG 33 ? ? 110.12 108.30 1.82 0.30 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 11.6807265376 _pdbx_refine_tls.origin_y 1.02215015017 _pdbx_refine_tls.origin_z 1.15734091266 _pdbx_refine_tls.T[1][1] 0.223612463985 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.0208215158441 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0321439328287 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.241293104713 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0070361847371 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.251658188808 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 2.52736225434 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.18841172682 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.233101883673 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.84064822332 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.62488510389 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.774739018379 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.011558461567 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.146607468939 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.18679404804 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0693037602599 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.110326921022 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.000214625864119 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.182064851018 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.110753787838 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.00328677043172 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id J _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id D _pdbx_refine_tls_group.end_auth_seq_id 4 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADN "O5'" O N N 1 ADN "C5'" C N N 2 ADN "C4'" C N R 3 ADN "O4'" O N N 4 ADN "C3'" C N S 5 ADN "O3'" O N N 6 ADN "C2'" C N R 7 ADN "O2'" O N N 8 ADN "C1'" C N R 9 ADN N9 N Y N 10 ADN C8 C Y N 11 ADN N7 N Y N 12 ADN C5 C Y N 13 ADN C6 C Y N 14 ADN N6 N N N 15 ADN N1 N Y N 16 ADN C2 C Y N 17 ADN N3 N Y N 18 ADN C4 C Y N 19 ADN "HO5'" H N N 20 ADN "H5'1" H N N 21 ADN "H5'2" H N N 22 ADN "H4'" H N N 23 ADN "H3'" H N N 24 ADN "HO3'" H N N 25 ADN "H2'" H N N 26 ADN "HO2'" H N N 27 ADN "H1'" H N N 28 ADN H8 H N N 29 ADN HN61 H N N 30 ADN HN62 H N N 31 ADN H2 H N N 32 CA CA CA N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 DT OP3 O N N 141 DT P P N N 142 DT OP1 O N N 143 DT OP2 O N N 144 DT "O5'" O N N 145 DT "C5'" C N N 146 DT "C4'" C N R 147 DT "O4'" O N N 148 DT "C3'" C N S 149 DT "O3'" O N N 150 DT "C2'" C N N 151 DT "C1'" C N R 152 DT N1 N N N 153 DT C2 C N N 154 DT O2 O N N 155 DT N3 N N N 156 DT C4 C N N 157 DT O4 O N N 158 DT C5 C N N 159 DT C7 C N N 160 DT C6 C N N 161 DT HOP3 H N N 162 DT HOP2 H N N 163 DT "H5'" H N N 164 DT "H5''" H N N 165 DT "H4'" H N N 166 DT "H3'" H N N 167 DT "HO3'" H N N 168 DT "H2'" H N N 169 DT "H2''" H N N 170 DT "H1'" H N N 171 DT H3 H N N 172 DT H71 H N N 173 DT H72 H N N 174 DT H73 H N N 175 DT H6 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 NA NA NA N N 180 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADN "O5'" "C5'" sing N N 1 ADN "O5'" "HO5'" sing N N 2 ADN "C5'" "C4'" sing N N 3 ADN "C5'" "H5'1" sing N N 4 ADN "C5'" "H5'2" sing N N 5 ADN "C4'" "O4'" sing N N 6 ADN "C4'" "C3'" sing N N 7 ADN "C4'" "H4'" sing N N 8 ADN "O4'" "C1'" sing N N 9 ADN "C3'" "O3'" sing N N 10 ADN "C3'" "C2'" sing N N 11 ADN "C3'" "H3'" sing N N 12 ADN "O3'" "HO3'" sing N N 13 ADN "C2'" "O2'" sing N N 14 ADN "C2'" "C1'" sing N N 15 ADN "C2'" "H2'" sing N N 16 ADN "O2'" "HO2'" sing N N 17 ADN "C1'" N9 sing N N 18 ADN "C1'" "H1'" sing N N 19 ADN N9 C8 sing Y N 20 ADN N9 C4 sing Y N 21 ADN C8 N7 doub Y N 22 ADN C8 H8 sing N N 23 ADN N7 C5 sing Y N 24 ADN C5 C6 sing Y N 25 ADN C5 C4 doub Y N 26 ADN C6 N6 sing N N 27 ADN C6 N1 doub Y N 28 ADN N6 HN61 sing N N 29 ADN N6 HN62 sing N N 30 ADN N1 C2 sing Y N 31 ADN C2 N3 doub Y N 32 ADN C2 H2 sing N N 33 ADN N3 C4 sing Y N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 DT OP3 P sing N N 147 DT OP3 HOP3 sing N N 148 DT P OP1 doub N N 149 DT P OP2 sing N N 150 DT P "O5'" sing N N 151 DT OP2 HOP2 sing N N 152 DT "O5'" "C5'" sing N N 153 DT "C5'" "C4'" sing N N 154 DT "C5'" "H5'" sing N N 155 DT "C5'" "H5''" sing N N 156 DT "C4'" "O4'" sing N N 157 DT "C4'" "C3'" sing N N 158 DT "C4'" "H4'" sing N N 159 DT "O4'" "C1'" sing N N 160 DT "C3'" "O3'" sing N N 161 DT "C3'" "C2'" sing N N 162 DT "C3'" "H3'" sing N N 163 DT "O3'" "HO3'" sing N N 164 DT "C2'" "C1'" sing N N 165 DT "C2'" "H2'" sing N N 166 DT "C2'" "H2''" sing N N 167 DT "C1'" N1 sing N N 168 DT "C1'" "H1'" sing N N 169 DT N1 C2 sing N N 170 DT N1 C6 sing N N 171 DT C2 O2 doub N N 172 DT C2 N3 sing N N 173 DT N3 C4 sing N N 174 DT N3 H3 sing N N 175 DT C4 O4 doub N N 176 DT C4 C5 sing N N 177 DT C5 C7 sing N N 178 DT C5 C6 doub N N 179 DT C7 H71 sing N N 180 DT C7 H72 sing N N 181 DT C7 H73 sing N N 182 DT C6 H6 sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9URQ 'double helix' 9URQ 'a-form double helix' 9URQ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 18 1_555 -0.380 -0.558 0.812 -10.475 -9.818 -4.245 1 A_DT0:DA40_B A 0 ? B 40 ? 20 1 1 A DC 2 1_555 B DG 17 1_555 0.379 0.006 0.342 -3.927 -9.733 8.307 2 A_DC1:DG39_B A 1 ? B 39 ? 19 1 1 A DA 3 1_555 B DT 16 1_555 0.011 -0.110 0.116 0.374 -14.351 2.287 3 A_DA2:DT38_B A 2 ? B 38 ? 20 1 1 A DC 4 1_555 B DG 15 1_555 0.313 -0.268 -0.039 0.967 -6.761 3.181 4 A_DC3:DG37_B A 3 ? B 37 ? 19 1 1 A DG 5 1_555 B DC 14 1_555 -0.098 -0.217 -0.101 3.921 -6.191 -0.068 5 A_DG4:DC36_B A 4 ? B 36 ? 19 1 1 A DA 6 1_555 B DT 13 1_555 -0.031 -0.131 0.235 16.380 -13.603 4.600 6 A_DA5:DT35_B A 5 ? B 35 ? 20 1 1 A DC 7 1_555 B DG 12 1_555 0.247 -0.150 0.285 6.172 -20.845 -0.164 7 A_DC6:DG34_B A 6 ? B 34 ? 19 1 1 A DG 8 1_555 A DG 12 1_555 5.647 -0.472 -0.256 -1.076 -7.988 -110.978 8 A_DG7:DG11_A A 7 ? A 11 ? 7 4 1 B DA 10 1_555 A DT 11 1_555 0.140 1.256 -0.035 -7.394 12.014 167.737 9 B_DA32:DT10_A B 32 ? A 10 ? 21 2 1 A DT 10 1_555 B DA 9 1_555 -0.146 -0.931 0.446 -6.244 10.878 -175.907 10 A_DT9:DA31_B A 9 ? B 31 ? 21 2 1 A DG 14 1_555 B DG 11 1_555 -5.758 -0.239 0.149 -32.830 -4.950 -117.608 11 A_DG13:DG33_B A 13 ? B 33 ? 7 4 1 A DA 18 1_555 B DG 8 1_555 -6.769 -4.234 0.565 -15.750 0.713 3.647 12 A_DA17:DG30_B A 17 ? B 30 ? 11 9 1 A DG 19 1_555 B DC 7 1_555 -0.299 -0.132 -0.131 8.284 2.257 -0.817 13 A_DG18:DC29_B A 18 ? B 29 ? 19 1 1 A DA 20 1_555 B DT 6 1_555 0.130 -0.119 0.047 12.148 -16.083 -1.870 14 A_DA19:DT28_B A 19 ? B 28 ? 20 1 1 A DA 21 1_555 B DT 5 1_555 0.288 -0.215 0.234 9.414 -16.639 2.775 15 A_DA20:DT27_B A 20 ? B 27 ? 20 1 1 A DA 22 1_555 B DT 4 1_555 -0.283 0.067 0.344 8.891 -13.133 8.131 16 A_DA21:DT26_B A 21 ? B 26 ? 20 1 1 A DC 23 1_555 B DG 3 1_555 0.875 -0.051 0.054 2.100 -12.836 7.640 17 A_DC22:DG25_B A 22 ? B 25 ? 19 1 1 A DT 24 1_555 B DA 2 1_555 -0.100 -0.239 0.319 -0.083 -10.841 15.866 18 A_DT23:DA24_B A 23 ? B 24 ? 20 1 1 A DC 25 1_555 B DG 1 1_555 -0.233 -0.079 0.295 4.135 -13.986 11.823 19 A_DC24:DG23_B A 24 ? B 23 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 18 1_555 A DC 2 1_555 B DG 17 1_555 0.506 0.689 3.238 5.491 -2.126 41.316 1.190 -0.136 3.239 -2.995 -7.734 41.716 1 AA_DT0DC1:DG39DA40_BB A 0 ? B 40 ? A 1 ? B 39 ? 1 A DC 2 1_555 B DG 17 1_555 A DA 3 1_555 B DT 16 1_555 -0.612 1.974 3.284 0.069 -0.722 40.645 2.922 0.888 3.249 -1.039 -0.099 40.651 2 AA_DC1DA2:DT38DG39_BB A 1 ? B 39 ? A 2 ? B 38 ? 1 A DA 3 1_555 B DT 16 1_555 A DC 4 1_555 B DG 15 1_555 0.072 -0.050 3.244 -0.350 3.204 30.816 -0.706 -0.203 3.221 6.009 0.656 30.980 3 AA_DA2DC3:DG37DT38_BB A 2 ? B 38 ? A 3 ? B 37 ? 1 A DC 4 1_555 B DG 15 1_555 A DG 5 1_555 B DC 14 1_555 0.202 0.465 3.307 -0.432 6.261 36.775 -0.121 -0.374 3.336 9.836 0.678 37.288 4 AA_DC3DG4:DC36DG37_BB A 3 ? B 37 ? A 4 ? B 36 ? 1 A DG 5 1_555 B DC 14 1_555 A DA 6 1_555 B DT 13 1_555 0.392 -0.223 3.012 -4.268 7.528 28.552 -1.853 -1.568 2.777 14.838 8.413 29.809 5 AA_DG4DA5:DT35DC36_BB A 4 ? B 36 ? A 5 ? B 35 ? 1 A DA 6 1_555 B DT 13 1_555 A DC 7 1_555 B DG 12 1_555 -0.213 -0.945 3.481 -4.021 -0.945 42.863 -1.188 -0.135 3.505 -1.289 5.487 43.052 6 AA_DA5DC6:DG34DT35_BB A 5 ? B 35 ? A 6 ? B 34 ? 1 A DC 7 1_555 B DG 12 1_555 A DG 8 1_555 A DG 12 1_555 -1.404 -1.121 3.384 8.294 2.388 88.936 -0.848 1.172 3.248 1.701 -5.908 89.266 7 AA_DC6DG7:DG11DG34_AB A 6 ? B 34 ? A 7 ? A 11 ? 1 A DG 8 1_555 A DG 12 1_555 B DA 10 1_555 A DT 11 1_555 -4.805 2.961 0.292 164.089 25.268 42.010 1.680 1.187 -3.903 13.315 -86.465 166.956 8 AB_DG7DA32:DT10DG11_AA A 7 ? A 11 ? B 32 ? A 10 ? 1 A DT 10 1_555 B DA 9 1_555 A DG 14 1_555 B DG 11 1_555 3.420 5.235 3.277 74.454 -155.954 -64.867 -0.692 2.633 4.502 79.479 37.944 -173.937 9 AA_DT9DG13:DG33DA31_BB A 9 ? B 31 ? A 13 ? B 33 ? 1 A DA 18 1_555 B DG 8 1_555 A DG 19 1_555 B DC 7 1_555 -0.550 1.725 2.958 2.524 7.519 58.285 1.395 0.682 3.116 7.681 -2.579 58.776 10 AA_DA17DG18:DC29DG30_BB A 17 ? B 30 ? A 18 ? B 29 ? 1 A DG 19 1_555 B DC 7 1_555 A DA 20 1_555 B DT 6 1_555 -0.773 0.786 3.353 -3.180 2.819 38.299 0.827 0.761 3.451 4.280 4.829 38.526 11 AA_DG18DA19:DT28DC29_BB A 18 ? B 29 ? A 19 ? B 28 ? 1 A DA 20 1_555 B DT 6 1_555 A DA 21 1_555 B DT 5 1_555 0.510 -0.176 3.225 -0.180 1.531 36.249 -0.494 -0.843 3.212 2.459 0.289 36.280 12 AA_DA19DA20:DT27DT28_BB A 19 ? B 28 ? A 20 ? B 27 ? 1 A DA 21 1_555 B DT 5 1_555 A DA 22 1_555 B DT 4 1_555 0.425 -0.165 3.118 -0.627 -1.697 34.592 -0.029 -0.806 3.114 -2.852 1.053 34.638 13 AA_DA20DA21:DT26DT27_BB A 20 ? B 27 ? A 21 ? B 26 ? 1 A DA 22 1_555 B DT 4 1_555 A DC 23 1_555 B DG 3 1_555 0.190 -0.592 3.430 1.368 2.639 39.179 -1.208 -0.113 3.389 3.928 -2.037 39.287 14 AA_DA21DC22:DG25DT26_BB A 21 ? B 26 ? A 22 ? B 25 ? 1 A DC 23 1_555 B DG 3 1_555 A DT 24 1_555 B DA 2 1_555 0.397 -0.725 3.272 -0.568 6.148 30.160 -2.542 -0.856 3.060 11.662 1.078 30.771 15 AA_DC22DT23:DA24DG25_BB A 22 ? B 25 ? A 23 ? B 24 ? 1 A DT 24 1_555 B DA 2 1_555 A DC 25 1_555 B DG 1 1_555 -0.019 0.020 3.105 -1.756 -0.412 36.358 0.087 -0.201 3.102 -0.660 2.813 36.402 16 AA_DT23DC24:DG23DA24_BB A 23 ? B 24 ? A 24 ? B 23 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details I-SAD # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9URQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.036657 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026667 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008220 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 8.75937 8.41257 2.76798 ? 9.64476 0.47514 97.39057 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #