data_9URT # _entry.id 9URT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9URT pdb_00009urt 10.2210/pdb9urt/pdb WWPDB D_1300058972 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-11-11 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9URT _pdbx_database_status.recvd_initial_deposition_date 2025-04-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 5 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, X.' 1 0000-0002-4502-0633 'Luo, Y.' 2 0009-0006-3449-7088 'Ren, Y.' 3 0009-0006-0959-2008 'Huang, L.' 4 0000-0002-2121-365X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of adenosine and ATP-binding DNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, X.' 1 0000-0002-4502-0633 primary 'Luo, Y.' 2 0009-0006-3449-7088 primary 'Ren, Y.' 3 0009-0006-0959-2008 primary 'Huang, L.' 4 0000-0002-2121-365X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (44-MER)' 13618.746 1 ? ? ? ? 2 non-polymer syn ADENOSINE 267.241 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 7 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 124 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DG)(DT)(DA)(DC)(DG)(DA)(DC)(DA)(DC)(DG)(DG)(DA)(DG)(DG)(DC)(DT)(DT)(DA)(DG) (DT)(DT)(DT)(DG)(DC)(DT)(DA)(DA)(DA)(DT)(DG)(DG)(DT)(DC)(DA)(DT)(DG)(DT)(DC)(DG) (DT)(DA)(DC)(DA) ; _entity_poly.pdbx_seq_one_letter_code_can TGTACGACACGGAGGCTTAGTTTGCTAAATGGTCATGTCGTACA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENOSINE ADN 3 'BARIUM ION' BA 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n 1 7 DA n 1 8 DC n 1 9 DA n 1 10 DC n 1 11 DG n 1 12 DG n 1 13 DA n 1 14 DG n 1 15 DG n 1 16 DC n 1 17 DT n 1 18 DT n 1 19 DA n 1 20 DG n 1 21 DT n 1 22 DT n 1 23 DT n 1 24 DG n 1 25 DC n 1 26 DT n 1 27 DA n 1 28 DA n 1 29 DA n 1 30 DT n 1 31 DG n 1 32 DG n 1 33 DT n 1 34 DC n 1 35 DA n 1 36 DT n 1 37 DG n 1 38 DT n 1 39 DC n 1 40 DG n 1 41 DT n 1 42 DA n 1 43 DC n 1 44 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 44 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADN non-polymer . ADENOSINE ? 'C10 H13 N5 O4' 267.241 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 -2 -2 DT DT A . n A 1 2 DG 2 -1 -1 DG DG A . n A 1 3 DT 3 0 0 DT DT A . n A 1 4 DA 4 1 1 DA DA A . n A 1 5 DC 5 2 2 DC DC A . n A 1 6 DG 6 3 3 DG DG A . n A 1 7 DA 7 4 4 DA DA A . n A 1 8 DC 8 5 5 DC DC A . n A 1 9 DA 9 6 6 DA DA A . n A 1 10 DC 10 7 7 DC DC A . n A 1 11 DG 11 8 8 DG DG A . n A 1 12 DG 12 9 9 DG DG A . n A 1 13 DA 13 10 10 DA DA A . n A 1 14 DG 14 11 11 DG DG A . n A 1 15 DG 15 12 12 DG DG A . n A 1 16 DC 16 13 13 DC DC A . n A 1 17 DT 17 14 14 DT DT A . n A 1 18 DT 18 15 15 DT DT A . n A 1 19 DA 19 16 16 DA DA A . n A 1 20 DG 20 17 17 DG DG A . n A 1 21 DT 21 18 18 DT DT A . n A 1 22 DT 22 19 19 DT DT A . n A 1 23 DT 23 20 20 DT DT A . n A 1 24 DG 24 21 21 DG DG A . n A 1 25 DC 25 22 22 DC DC A . n A 1 26 DT 26 23 23 DT DT A . n A 1 27 DA 27 24 24 DA DA A . n A 1 28 DA 28 25 25 DA DA A . n A 1 29 DA 29 26 26 DA DA A . n A 1 30 DT 30 27 27 DT DT A . n A 1 31 DG 31 28 28 DG DG A . n A 1 32 DG 32 29 29 DG DG A . n A 1 33 DT 33 30 30 DT DT A . n A 1 34 DC 34 31 31 DC DC A . n A 1 35 DA 35 32 32 DA DA A . n A 1 36 DT 36 33 33 DT DT A . n A 1 37 DG 37 34 34 DG DG A . n A 1 38 DT 38 35 35 DT DT A . n A 1 39 DC 39 36 36 DC DC A . n A 1 40 DG 40 37 37 DG DG A . n A 1 41 DT 41 38 38 DT DT A . n A 1 42 DA 42 39 39 DA DA A . n A 1 43 DC 43 40 40 DC DC A . n A 1 44 DA 44 41 41 DA DA A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 ADN ? ? ADN ? ? 'SUBJECT OF INVESTIGATION' ? 2 BA ? ? BA ? ? 'SUBJECT OF INVESTIGATION' ? 3 NA ? ? NA ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN 1 101 101 ADN ADN A . C 3 BA 1 102 1 BA BA A . D 3 BA 1 103 2 BA BA A . E 3 BA 1 104 3 BA BA A . F 3 BA 1 105 4 BA BA A . G 3 BA 1 106 5 BA BA A . H 3 BA 1 107 7 BA BA A . I 3 BA 1 108 10 BA BA A . J 4 NA 1 109 1 NA NA A . K 5 HOH 1 201 127 HOH HOH A . K 5 HOH 2 202 57 HOH HOH A . K 5 HOH 3 203 395 HOH HOH A . K 5 HOH 4 204 441 HOH HOH A . K 5 HOH 5 205 247 HOH HOH A . K 5 HOH 6 206 81 HOH HOH A . K 5 HOH 7 207 275 HOH HOH A . K 5 HOH 8 208 61 HOH HOH A . K 5 HOH 9 209 443 HOH HOH A . K 5 HOH 10 210 444 HOH HOH A . K 5 HOH 11 211 80 HOH HOH A . K 5 HOH 12 212 41 HOH HOH A . K 5 HOH 13 213 445 HOH HOH A . K 5 HOH 14 214 150 HOH HOH A . K 5 HOH 15 215 67 HOH HOH A . K 5 HOH 16 216 221 HOH HOH A . K 5 HOH 17 217 346 HOH HOH A . K 5 HOH 18 218 86 HOH HOH A . K 5 HOH 19 219 298 HOH HOH A . K 5 HOH 20 220 124 HOH HOH A . K 5 HOH 21 221 217 HOH HOH A . K 5 HOH 22 222 280 HOH HOH A . K 5 HOH 23 223 401 HOH HOH A . K 5 HOH 24 224 380 HOH HOH A . K 5 HOH 25 225 293 HOH HOH A . K 5 HOH 26 226 25 HOH HOH A . K 5 HOH 27 227 174 HOH HOH A . K 5 HOH 28 228 212 HOH HOH A . K 5 HOH 29 229 101 HOH HOH A . K 5 HOH 30 230 36 HOH HOH A . K 5 HOH 31 231 39 HOH HOH A . K 5 HOH 32 232 119 HOH HOH A . K 5 HOH 33 233 243 HOH HOH A . K 5 HOH 34 234 53 HOH HOH A . K 5 HOH 35 235 95 HOH HOH A . K 5 HOH 36 236 118 HOH HOH A . K 5 HOH 37 237 54 HOH HOH A . K 5 HOH 38 238 56 HOH HOH A . K 5 HOH 39 239 55 HOH HOH A . K 5 HOH 40 240 355 HOH HOH A . K 5 HOH 41 241 78 HOH HOH A . K 5 HOH 42 242 9 HOH HOH A . K 5 HOH 43 243 48 HOH HOH A . K 5 HOH 44 244 37 HOH HOH A . K 5 HOH 45 245 26 HOH HOH A . K 5 HOH 46 246 29 HOH HOH A . K 5 HOH 47 247 11 HOH HOH A . K 5 HOH 48 248 125 HOH HOH A . K 5 HOH 49 249 22 HOH HOH A . K 5 HOH 50 250 34 HOH HOH A . K 5 HOH 51 251 74 HOH HOH A . K 5 HOH 52 252 230 HOH HOH A . K 5 HOH 53 253 365 HOH HOH A . K 5 HOH 54 254 44 HOH HOH A . K 5 HOH 55 255 97 HOH HOH A . K 5 HOH 56 256 79 HOH HOH A . K 5 HOH 57 257 91 HOH HOH A . K 5 HOH 58 258 84 HOH HOH A . K 5 HOH 59 259 5 HOH HOH A . K 5 HOH 60 260 191 HOH HOH A . K 5 HOH 61 261 392 HOH HOH A . K 5 HOH 62 262 277 HOH HOH A . K 5 HOH 63 263 153 HOH HOH A . K 5 HOH 64 264 442 HOH HOH A . K 5 HOH 65 265 62 HOH HOH A . K 5 HOH 66 266 64 HOH HOH A . K 5 HOH 67 267 6 HOH HOH A . K 5 HOH 68 268 40 HOH HOH A . K 5 HOH 69 269 15 HOH HOH A . K 5 HOH 70 270 71 HOH HOH A . K 5 HOH 71 271 35 HOH HOH A . K 5 HOH 72 272 52 HOH HOH A . K 5 HOH 73 273 13 HOH HOH A . K 5 HOH 74 274 19 HOH HOH A . K 5 HOH 75 275 446 HOH HOH A . K 5 HOH 76 276 28 HOH HOH A . K 5 HOH 77 277 17 HOH HOH A . K 5 HOH 78 278 30 HOH HOH A . K 5 HOH 79 279 276 HOH HOH A . K 5 HOH 80 280 428 HOH HOH A . K 5 HOH 81 281 24 HOH HOH A . K 5 HOH 82 282 27 HOH HOH A . K 5 HOH 83 283 419 HOH HOH A . K 5 HOH 84 284 126 HOH HOH A . K 5 HOH 85 285 204 HOH HOH A . K 5 HOH 86 286 350 HOH HOH A . K 5 HOH 87 287 122 HOH HOH A . K 5 HOH 88 288 104 HOH HOH A . K 5 HOH 89 289 42 HOH HOH A . K 5 HOH 90 290 82 HOH HOH A . K 5 HOH 91 291 31 HOH HOH A . K 5 HOH 92 292 168 HOH HOH A . K 5 HOH 93 293 38 HOH HOH A . K 5 HOH 94 294 146 HOH HOH A . K 5 HOH 95 295 283 HOH HOH A . K 5 HOH 96 296 16 HOH HOH A . K 5 HOH 97 297 285 HOH HOH A . K 5 HOH 98 298 232 HOH HOH A . K 5 HOH 99 299 47 HOH HOH A . K 5 HOH 100 300 385 HOH HOH A . K 5 HOH 101 301 143 HOH HOH A . K 5 HOH 102 302 21 HOH HOH A . K 5 HOH 103 303 332 HOH HOH A . K 5 HOH 104 304 69 HOH HOH A . K 5 HOH 105 305 281 HOH HOH A . K 5 HOH 106 306 105 HOH HOH A . K 5 HOH 107 307 142 HOH HOH A . K 5 HOH 108 308 14 HOH HOH A . K 5 HOH 109 309 85 HOH HOH A . K 5 HOH 110 310 375 HOH HOH A . K 5 HOH 111 311 206 HOH HOH A . K 5 HOH 112 312 357 HOH HOH A . K 5 HOH 113 313 440 HOH HOH A . K 5 HOH 114 314 319 HOH HOH A . K 5 HOH 115 315 218 HOH HOH A . K 5 HOH 116 316 10 HOH HOH A . K 5 HOH 117 317 349 HOH HOH A . K 5 HOH 118 318 7 HOH HOH A . K 5 HOH 119 319 246 HOH HOH A . K 5 HOH 120 320 321 HOH HOH A . K 5 HOH 121 321 90 HOH HOH A . K 5 HOH 122 322 425 HOH HOH A . K 5 HOH 123 323 434 HOH HOH A . K 5 HOH 124 324 214 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 ? 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 ? 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPX ? ? ? . ? 4 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . ? 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . ? 6 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 9URT _cell.details ? _cell.formula_units_Z ? _cell.length_a 58.795 _cell.length_a_esd ? _cell.length_b 58.795 _cell.length_b_esd ? _cell.length_c 122.411 _cell.length_c_esd ? _cell.volume 366464.463 _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9URT _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9URT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M Calcium chloride dihydrate, 0.05 M HEPES sodium pH 7.5, 30% v/v Polyethylene glycol 400, 0.002 M Spermine, 0.01 M barium chloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-12-07 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.541900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL10U2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.541900 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL10U2 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9URT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.60 _reflns.d_resolution_low 50.92 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27593 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 89.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 31.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 27.600 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.010 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.69 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1277 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.552 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.469 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.845 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 35.14 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9URT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.60 _refine.ls_d_res_low 40.80 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15169 _refine.ls_number_reflns_R_free 766 _refine.ls_number_reflns_R_work 14403 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 88.56 _refine.ls_percent_reflns_R_free 5.05 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2342 _refine.ls_R_factor_R_free 0.2891 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2320 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 37.5774 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1907 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 40.80 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 1057 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 906 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0098 ? 1035 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.2464 ? 1596 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0607 ? 179 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0099 ? 45 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 34.0554 ? 436 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.60 1.73 . . 106 1756 55.92 . . . . 0.2998 . . . . . . . . . . . . . . . 0.3873 'X-RAY DIFFRACTION' 1.73 1.90 . . 150 2978 93.60 . . . . 0.2653 . . . . . . . . . . . . . . . 0.2969 'X-RAY DIFFRACTION' 1.90 2.18 . . 170 3066 95.77 . . . . 0.2816 . . . . . . . . . . . . . . . 0.3565 'X-RAY DIFFRACTION' 2.18 2.74 . . 165 3164 97.31 . . . . 0.3113 . . . . . . . . . . . . . . . 0.3665 'X-RAY DIFFRACTION' 2.74 40.80 . . 175 3439 98.88 . . . . 0.1989 . . . . . . . . . . . . . . . 0.2561 # _struct.entry_id 9URT _struct.title 'Crystal structure of Ade1304 DNA aptamer (1304b9) bound to adenosine with barium ions' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9URT _struct_keywords.text 'Adenosine/ATP DNA aptamer, ADO, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9URT _struct_ref.pdbx_db_accession 9URT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9URT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 44 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9URT _struct_ref_seq.db_align_beg -2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 41 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -2 _struct_ref_seq.pdbx_auth_seq_align_end 41 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5740 ? 1 MORE -206 ? 1 'SSA (A^2)' 29050 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 11_555 -x+y,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DT 1 O2 ? ? ? 1_555 H BA . BA ? ? A DT -2 A BA 107 1_555 ? ? ? ? ? ? ? 2.776 ? ? metalc2 metalc ? ? A DG 2 OP1 ? ? ? 1_555 H BA . BA ? ? A DG -1 A BA 107 1_555 ? ? ? ? ? ? ? 3.044 ? ? metalc3 metalc ? ? A DG 2 OP1 ? ? ? 1_555 I BA . BA ? ? A DG -1 A BA 108 10_454 ? ? ? ? ? ? ? 3.409 ? ? metalc4 metalc ? ? A DG 2 OP2 ? ? ? 1_555 I BA . BA ? ? A DG -1 A BA 108 10_454 ? ? ? ? ? ? ? 2.900 ? ? metalc5 metalc ? ? A DA 9 OP2 ? ? ? 1_555 F BA . BA ? ? A DA 6 A BA 105 1_555 ? ? ? ? ? ? ? 2.946 ? ? metalc6 metalc ? ? A DA 9 OP2 ? ? ? 1_555 F BA . BA ? ? A DA 6 A BA 105 8_555 ? ? ? ? ? ? ? 3.301 ? ? metalc7 metalc ? ? A DT 22 OP2 ? ? ? 1_555 H BA . BA ? ? A DT 19 A BA 107 1_545 ? ? ? ? ? ? ? 3.332 ? ? metalc8 metalc ? ? A DT 22 OP2 ? ? ? 1_555 I BA . BA ? ? A DT 19 A BA 108 1_555 ? ? ? ? ? ? ? 3.172 ? ? metalc9 metalc ? ? A DT 23 OP1 ? ? ? 1_555 I BA . BA ? ? A DT 20 A BA 108 10_444 ? ? ? ? ? ? ? 3.138 ? ? metalc10 metalc ? ? A DT 23 OP2 ? ? ? 1_555 I BA . BA ? ? A DT 20 A BA 108 10_444 ? ? ? ? ? ? ? 3.179 ? ? metalc11 metalc ? ? A DG 24 O6 ? ? ? 1_555 G BA . BA ? ? A DG 21 A BA 106 1_555 ? ? ? ? ? ? ? 2.650 ? ? metalc12 metalc ? ? A DA 35 OP2 ? ? ? 1_555 E BA . BA ? ? A DA 32 A BA 104 4_555 ? ? ? ? ? ? ? 3.125 ? ? metalc13 metalc ? ? D BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 103 A HOH 203 1_555 ? ? ? ? ? ? ? 2.827 ? ? metalc14 metalc ? ? D BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 103 A HOH 245 1_555 ? ? ? ? ? ? ? 2.895 ? ? metalc15 metalc ? ? D BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 103 A HOH 302 1_555 ? ? ? ? ? ? ? 2.756 ? ? metalc16 metalc ? ? E BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 104 A HOH 260 1_555 ? ? ? ? ? ? ? 2.562 ? ? metalc17 metalc ? ? E BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 104 A HOH 260 4_555 ? ? ? ? ? ? ? 3.007 ? ? metalc18 metalc ? ? E BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 104 A HOH 268 4_555 ? ? ? ? ? ? ? 3.204 ? ? metalc19 metalc ? ? E BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 104 A HOH 274 4_555 ? ? ? ? ? ? ? 2.776 ? ? metalc20 metalc ? ? F BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 105 A HOH 202 8_555 ? ? ? ? ? ? ? 2.511 ? ? metalc21 metalc ? ? G BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 106 A HOH 207 10_544 ? ? ? ? ? ? ? 2.652 ? ? metalc22 metalc ? ? G BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 106 A HOH 220 1_555 ? ? ? ? ? ? ? 2.503 ? ? metalc23 metalc ? ? G BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 106 A HOH 266 4_545 ? ? ? ? ? ? ? 2.527 ? ? metalc24 metalc ? ? H BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 107 A HOH 262 1_555 ? ? ? ? ? ? ? 3.094 ? ? metalc25 metalc ? ? H BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 107 A HOH 279 1_555 ? ? ? ? ? ? ? 3.175 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 43 N3 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 43 O2 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 43 N4 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 42 N1 ? ? A DT 0 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 42 N6 ? ? A DT 0 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 41 N3 ? ? A DA 1 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 41 O4 ? ? A DA 1 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 40 N1 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 40 O6 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 40 N2 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 39 N3 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 39 O2 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 39 N4 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 38 N3 ? ? A DA 4 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 38 O4 ? ? A DA 4 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 37 N1 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 37 O6 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 37 N2 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 36 N3 ? ? A DA 6 A DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 36 O4 ? ? A DA 6 A DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 32 N7 ? ? A DG 8 A DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 32 O6 ? ? A DG 8 A DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog23 hydrog ? ? A DA 13 N6 ? ? ? 1_555 A DG 31 N3 ? ? A DA 10 A DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? A DA 13 N7 ? ? ? 1_555 A DG 31 N2 ? ? A DA 10 A DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog25 hydrog ? ? A DA 13 N1 ? ? ? 1_555 A DT 33 N3 ? ? A DA 10 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 13 N6 ? ? ? 1_555 A DT 33 O4 ? ? A DA 10 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DC 16 N3 ? ? A DG 11 A DC 13 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog28 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DT 30 O2 ? ? A DG 11 A DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A DG 14 O6 ? ? ? 1_555 A DT 30 N3 ? ? A DG 11 A DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DA 29 N1 ? ? A DG 12 A DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DA 29 N6 ? ? A DG 12 A DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? A DT 17 N3 ? ? ? 1_555 A DA 28 N1 ? ? A DT 14 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 17 O4 ? ? ? 1_555 A DA 28 N6 ? ? A DT 14 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 18 N3 ? ? ? 1_555 A DA 27 N1 ? ? A DT 15 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 18 O4 ? ? ? 1_555 A DA 27 N6 ? ? A DT 15 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 19 N1 ? ? ? 1_555 A DT 26 N3 ? ? A DA 16 A DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 19 N6 ? ? ? 1_555 A DT 26 O4 ? ? A DA 16 A DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DC 25 N3 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DC 25 O2 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 20 O6 ? ? ? 1_555 A DC 25 N4 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 32 N2 ? ? ? 1_555 A DA 35 N7 ? ? A DG 29 A DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A DG 32 N3 ? ? ? 1_555 A DA 35 N6 ? ? A DG 29 A DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2 ? A DT 1 ? A DT -2 ? 1_555 BA ? H BA . ? A BA 107 ? 1_555 OP1 ? A DG 2 ? A DG -1 ? 1_555 133.5 ? 2 O2 ? A DT 1 ? A DT -2 ? 1_555 BA ? H BA . ? A BA 107 ? 1_555 OP2 ? A DT 22 ? A DT 19 ? 1_555 4.8 ? 3 OP1 ? A DG 2 ? A DG -1 ? 1_555 BA ? H BA . ? A BA 107 ? 1_555 OP2 ? A DT 22 ? A DT 19 ? 1_555 132.6 ? 4 O2 ? A DT 1 ? A DT -2 ? 1_555 BA ? H BA . ? A BA 107 ? 1_555 O ? K HOH . ? A HOH 262 ? 1_555 158.4 ? 5 OP1 ? A DG 2 ? A DG -1 ? 1_555 BA ? H BA . ? A BA 107 ? 1_555 O ? K HOH . ? A HOH 262 ? 1_555 61.5 ? 6 OP2 ? A DT 22 ? A DT 19 ? 1_555 BA ? H BA . ? A BA 107 ? 1_555 O ? K HOH . ? A HOH 262 ? 1_555 154.7 ? 7 O2 ? A DT 1 ? A DT -2 ? 1_555 BA ? H BA . ? A BA 107 ? 1_555 O ? K HOH . ? A HOH 279 ? 1_555 86.1 ? 8 OP1 ? A DG 2 ? A DG -1 ? 1_555 BA ? H BA . ? A BA 107 ? 1_555 O ? K HOH . ? A HOH 279 ? 1_555 108.3 ? 9 OP2 ? A DT 22 ? A DT 19 ? 1_555 BA ? H BA . ? A BA 107 ? 1_555 O ? K HOH . ? A HOH 279 ? 1_555 81.9 ? 10 O ? K HOH . ? A HOH 262 ? 1_555 BA ? H BA . ? A BA 107 ? 1_555 O ? K HOH . ? A HOH 279 ? 1_555 73.1 ? 11 OP1 ? A DG 2 ? A DG -1 ? 1_555 BA ? I BA . ? A BA 108 ? 10_454 OP2 ? A DG 2 ? A DG -1 ? 1_555 47.1 ? 12 OP1 ? A DG 2 ? A DG -1 ? 1_555 BA ? I BA . ? A BA 108 ? 10_454 OP2 ? A DT 22 ? A DT 19 ? 1_555 89.8 ? 13 OP2 ? A DG 2 ? A DG -1 ? 1_555 BA ? I BA . ? A BA 108 ? 10_454 OP2 ? A DT 22 ? A DT 19 ? 1_555 102.7 ? 14 OP1 ? A DG 2 ? A DG -1 ? 1_555 BA ? I BA . ? A BA 108 ? 10_454 OP1 ? A DT 23 ? A DT 20 ? 1_555 92.0 ? 15 OP2 ? A DG 2 ? A DG -1 ? 1_555 BA ? I BA . ? A BA 108 ? 10_454 OP1 ? A DT 23 ? A DT 20 ? 1_555 100.9 ? 16 OP2 ? A DT 22 ? A DT 19 ? 1_555 BA ? I BA . ? A BA 108 ? 10_454 OP1 ? A DT 23 ? A DT 20 ? 1_555 5.0 ? 17 OP1 ? A DG 2 ? A DG -1 ? 1_555 BA ? I BA . ? A BA 108 ? 10_454 OP2 ? A DT 23 ? A DT 20 ? 1_555 90.4 ? 18 OP2 ? A DG 2 ? A DG -1 ? 1_555 BA ? I BA . ? A BA 108 ? 10_454 OP2 ? A DT 23 ? A DT 20 ? 1_555 101.1 ? 19 OP2 ? A DT 22 ? A DT 19 ? 1_555 BA ? I BA . ? A BA 108 ? 10_454 OP2 ? A DT 23 ? A DT 20 ? 1_555 2.8 ? 20 OP1 ? A DT 23 ? A DT 20 ? 1_555 BA ? I BA . ? A BA 108 ? 10_454 OP2 ? A DT 23 ? A DT 20 ? 1_555 2.4 ? 21 OP2 ? A DA 9 ? A DA 6 ? 1_555 BA ? F BA . ? A BA 105 ? 1_555 OP2 ? A DA 9 ? A DA 6 ? 1_555 0.0 ? 22 OP2 ? A DA 9 ? A DA 6 ? 1_555 BA ? F BA . ? A BA 105 ? 1_555 O ? K HOH . ? A HOH 202 ? 8_555 88.1 ? 23 OP2 ? A DA 9 ? A DA 6 ? 1_555 BA ? F BA . ? A BA 105 ? 1_555 O ? K HOH . ? A HOH 202 ? 8_555 88.1 ? 24 O6 ? A DG 24 ? A DG 21 ? 1_555 BA ? G BA . ? A BA 106 ? 1_555 O ? K HOH . ? A HOH 207 ? 10_544 140.6 ? 25 O6 ? A DG 24 ? A DG 21 ? 1_555 BA ? G BA . ? A BA 106 ? 1_555 O ? K HOH . ? A HOH 220 ? 1_555 67.4 ? 26 O ? K HOH . ? A HOH 207 ? 10_544 BA ? G BA . ? A BA 106 ? 1_555 O ? K HOH . ? A HOH 220 ? 1_555 85.2 ? 27 O6 ? A DG 24 ? A DG 21 ? 1_555 BA ? G BA . ? A BA 106 ? 1_555 O ? K HOH . ? A HOH 266 ? 4_545 71.0 ? 28 O ? K HOH . ? A HOH 207 ? 10_544 BA ? G BA . ? A BA 106 ? 1_555 O ? K HOH . ? A HOH 266 ? 4_545 115.5 ? 29 O ? K HOH . ? A HOH 220 ? 1_555 BA ? G BA . ? A BA 106 ? 1_555 O ? K HOH . ? A HOH 266 ? 4_545 132.7 ? 30 OP2 ? A DA 35 ? A DA 32 ? 1_555 BA ? E BA . ? A BA 104 ? 4_555 O ? K HOH . ? A HOH 260 ? 1_555 55.1 ? 31 OP2 ? A DA 35 ? A DA 32 ? 1_555 BA ? E BA . ? A BA 104 ? 4_555 O ? K HOH . ? A HOH 260 ? 4_555 101.9 ? 32 O ? K HOH . ? A HOH 260 ? 1_555 BA ? E BA . ? A BA 104 ? 4_555 O ? K HOH . ? A HOH 260 ? 4_555 101.8 ? 33 OP2 ? A DA 35 ? A DA 32 ? 1_555 BA ? E BA . ? A BA 104 ? 4_555 O ? K HOH . ? A HOH 268 ? 4_555 89.2 ? 34 O ? K HOH . ? A HOH 260 ? 1_555 BA ? E BA . ? A BA 104 ? 4_555 O ? K HOH . ? A HOH 268 ? 4_555 63.1 ? 35 O ? K HOH . ? A HOH 260 ? 4_555 BA ? E BA . ? A BA 104 ? 4_555 O ? K HOH . ? A HOH 268 ? 4_555 40.7 ? 36 OP2 ? A DA 35 ? A DA 32 ? 1_555 BA ? E BA . ? A BA 104 ? 4_555 O ? K HOH . ? A HOH 274 ? 4_555 38.7 ? 37 O ? K HOH . ? A HOH 260 ? 1_555 BA ? E BA . ? A BA 104 ? 4_555 O ? K HOH . ? A HOH 274 ? 4_555 44.9 ? 38 O ? K HOH . ? A HOH 260 ? 4_555 BA ? E BA . ? A BA 104 ? 4_555 O ? K HOH . ? A HOH 274 ? 4_555 70.9 ? 39 O ? K HOH . ? A HOH 268 ? 4_555 BA ? E BA . ? A BA 104 ? 4_555 O ? K HOH . ? A HOH 274 ? 4_555 50.6 ? 40 O ? K HOH . ? A HOH 203 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O ? K HOH . ? A HOH 245 ? 1_555 71.5 ? 41 O ? K HOH . ? A HOH 203 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O ? K HOH . ? A HOH 302 ? 1_555 93.0 ? 42 O ? K HOH . ? A HOH 245 ? 1_555 BA ? D BA . ? A BA 103 ? 1_555 O ? K HOH . ? A HOH 302 ? 1_555 135.3 ? # _pdbx_entry_details.entry_id 9URT _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 225 ? ? O A HOH 297 ? ? 1.83 2 1 OP2 A DG 28 ? ? O A HOH 201 ? ? 1.84 3 1 OP1 A DC 5 ? ? O A HOH 202 ? ? 1.85 4 1 OP2 A DA 4 ? ? O A HOH 203 ? ? 1.91 5 1 OP1 A DG 9 ? ? O A HOH 205 ? ? 2.05 6 1 O A HOH 203 ? ? O A HOH 301 ? ? 2.06 7 1 OP1 A DT 19 ? ? O A HOH 206 ? ? 2.10 8 1 OP1 A DT 35 ? ? O A HOH 207 ? ? 2.11 9 1 OP1 A DG 8 ? ? O A HOH 208 ? ? 2.15 10 1 O A HOH 213 ? ? O A HOH 267 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 206 ? ? 1_555 O A HOH 219 ? ? 10_444 1.74 2 1 O A HOH 206 ? ? 1_555 O A HOH 211 ? ? 10_544 2.01 3 1 O A HOH 210 ? ? 1_555 O A HOH 262 ? ? 1_545 2.03 4 1 O A HOH 264 ? ? 1_555 O A HOH 279 ? ? 1_545 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG -1 ? ? "C3'" A DG -1 ? ? 1.376 1.419 -0.043 0.006 N 2 1 "O3'" A DT 19 ? ? "C3'" A DT 19 ? ? 1.367 1.419 -0.052 0.006 N 3 1 "O3'" A DG 21 ? ? "C3'" A DG 21 ? ? 1.376 1.419 -0.043 0.006 N 4 1 "O3'" A DG 34 ? ? "C3'" A DG 34 ? ? 1.382 1.419 -0.037 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.87 108.30 2.57 0.30 N 2 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.36 108.30 2.06 0.30 N 3 1 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 111.68 108.30 3.38 0.30 N 4 1 "O4'" A DT 23 ? ? "C1'" A DT 23 ? ? N1 A DT 23 ? ? 110.29 108.30 1.99 0.30 N 5 1 "O4'" A DG 28 ? ? "C1'" A DG 28 ? ? N9 A DG 28 ? ? 110.49 108.30 2.19 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 109 ? J NA . 2 1 A HOH 204 ? K HOH . 3 1 A HOH 209 ? K HOH . 4 1 A HOH 252 ? K HOH . 5 1 A HOH 311 ? K HOH . 6 1 A HOH 322 ? K HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADN "O5'" O N N 1 ADN "C5'" C N N 2 ADN "C4'" C N R 3 ADN "O4'" O N N 4 ADN "C3'" C N S 5 ADN "O3'" O N N 6 ADN "C2'" C N R 7 ADN "O2'" O N N 8 ADN "C1'" C N R 9 ADN N9 N Y N 10 ADN C8 C Y N 11 ADN N7 N Y N 12 ADN C5 C Y N 13 ADN C6 C Y N 14 ADN N6 N N N 15 ADN N1 N Y N 16 ADN C2 C Y N 17 ADN N3 N Y N 18 ADN C4 C Y N 19 ADN "HO5'" H N N 20 ADN "H5'1" H N N 21 ADN "H5'2" H N N 22 ADN "H4'" H N N 23 ADN "H3'" H N N 24 ADN "HO3'" H N N 25 ADN "H2'" H N N 26 ADN "HO2'" H N N 27 ADN "H1'" H N N 28 ADN H8 H N N 29 ADN HN61 H N N 30 ADN HN62 H N N 31 ADN H2 H N N 32 BA BA BA N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 DT OP3 O N N 141 DT P P N N 142 DT OP1 O N N 143 DT OP2 O N N 144 DT "O5'" O N N 145 DT "C5'" C N N 146 DT "C4'" C N R 147 DT "O4'" O N N 148 DT "C3'" C N S 149 DT "O3'" O N N 150 DT "C2'" C N N 151 DT "C1'" C N R 152 DT N1 N N N 153 DT C2 C N N 154 DT O2 O N N 155 DT N3 N N N 156 DT C4 C N N 157 DT O4 O N N 158 DT C5 C N N 159 DT C7 C N N 160 DT C6 C N N 161 DT HOP3 H N N 162 DT HOP2 H N N 163 DT "H5'" H N N 164 DT "H5''" H N N 165 DT "H4'" H N N 166 DT "H3'" H N N 167 DT "HO3'" H N N 168 DT "H2'" H N N 169 DT "H2''" H N N 170 DT "H1'" H N N 171 DT H3 H N N 172 DT H71 H N N 173 DT H72 H N N 174 DT H73 H N N 175 DT H6 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 NA NA NA N N 180 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADN "O5'" "C5'" sing N N 1 ADN "O5'" "HO5'" sing N N 2 ADN "C5'" "C4'" sing N N 3 ADN "C5'" "H5'1" sing N N 4 ADN "C5'" "H5'2" sing N N 5 ADN "C4'" "O4'" sing N N 6 ADN "C4'" "C3'" sing N N 7 ADN "C4'" "H4'" sing N N 8 ADN "O4'" "C1'" sing N N 9 ADN "C3'" "O3'" sing N N 10 ADN "C3'" "C2'" sing N N 11 ADN "C3'" "H3'" sing N N 12 ADN "O3'" "HO3'" sing N N 13 ADN "C2'" "O2'" sing N N 14 ADN "C2'" "C1'" sing N N 15 ADN "C2'" "H2'" sing N N 16 ADN "O2'" "HO2'" sing N N 17 ADN "C1'" N9 sing N N 18 ADN "C1'" "H1'" sing N N 19 ADN N9 C8 sing Y N 20 ADN N9 C4 sing Y N 21 ADN C8 N7 doub Y N 22 ADN C8 H8 sing N N 23 ADN N7 C5 sing Y N 24 ADN C5 C6 sing Y N 25 ADN C5 C4 doub Y N 26 ADN C6 N6 sing N N 27 ADN C6 N1 doub Y N 28 ADN N6 HN61 sing N N 29 ADN N6 HN62 sing N N 30 ADN N1 C2 sing Y N 31 ADN C2 N3 doub Y N 32 ADN C2 H2 sing N N 33 ADN N3 C4 sing Y N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 DT OP3 P sing N N 147 DT OP3 HOP3 sing N N 148 DT P OP1 doub N N 149 DT P OP2 sing N N 150 DT P "O5'" sing N N 151 DT OP2 HOP2 sing N N 152 DT "O5'" "C5'" sing N N 153 DT "C5'" "C4'" sing N N 154 DT "C5'" "H5'" sing N N 155 DT "C5'" "H5''" sing N N 156 DT "C4'" "O4'" sing N N 157 DT "C4'" "C3'" sing N N 158 DT "C4'" "H4'" sing N N 159 DT "O4'" "C1'" sing N N 160 DT "C3'" "O3'" sing N N 161 DT "C3'" "C2'" sing N N 162 DT "C3'" "H3'" sing N N 163 DT "O3'" "HO3'" sing N N 164 DT "C2'" "C1'" sing N N 165 DT "C2'" "H2'" sing N N 166 DT "C2'" "H2''" sing N N 167 DT "C1'" N1 sing N N 168 DT "C1'" "H1'" sing N N 169 DT N1 C2 sing N N 170 DT N1 C6 sing N N 171 DT C2 O2 doub N N 172 DT C2 N3 sing N N 173 DT N3 C4 sing N N 174 DT N3 H3 sing N N 175 DT C4 O4 doub N N 176 DT C4 C5 sing N N 177 DT C5 C7 sing N N 178 DT C5 C6 doub N N 179 DT C7 H71 sing N N 180 DT C7 H72 sing N N 181 DT C7 H73 sing N N 182 DT C6 H6 sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9URT 'double helix' 9URT 'b-form double helix' 9URT 'hairpin loop' 9URT 'bulge loop' 9URT 'mismatched base pair' 9URT 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DC 43 1_555 -0.319 -0.137 -0.226 -13.508 -14.093 0.826 1 A_DG-1:DC40_A A -1 ? A 40 ? 19 1 1 A DT 3 1_555 A DA 42 1_555 -0.203 -0.144 -0.101 -0.620 -5.454 -2.268 2 A_DT0:DA39_A A 0 ? A 39 ? 20 1 1 A DA 4 1_555 A DT 41 1_555 -0.021 -0.157 0.099 -2.596 -8.485 3.905 3 A_DA1:DT38_A A 1 ? A 38 ? 20 1 1 A DC 5 1_555 A DG 40 1_555 0.030 -0.227 -0.021 4.827 -3.069 -4.235 4 A_DC2:DG37_A A 2 ? A 37 ? 19 1 1 A DG 6 1_555 A DC 39 1_555 -0.423 -0.196 -0.121 0.387 -7.692 -0.420 5 A_DG3:DC36_A A 3 ? A 36 ? 19 1 1 A DA 7 1_555 A DT 38 1_555 0.019 -0.147 0.334 16.182 -7.007 0.214 6 A_DA4:DT35_A A 4 ? A 35 ? 20 1 1 A DC 8 1_555 A DG 37 1_555 0.239 -0.244 -0.069 15.153 -11.574 -0.122 7 A_DC5:DG34_A A 5 ? A 34 ? 19 1 1 A DA 9 1_555 A DT 36 1_555 0.165 0.058 -0.054 19.085 -14.304 -5.568 8 A_DA6:DT33_A A 6 ? A 33 ? 20 1 1 A DG 11 1_555 A DG 32 1_555 5.496 -0.329 -0.284 24.897 -16.226 -111.026 9 A_DG8:DG29_A A 8 ? A 29 ? 7 4 1 A DA 13 1_555 A DT 33 1_555 0.058 0.046 -0.064 24.840 29.968 2.431 10 A_DA10:DT30_A A 10 ? A 30 ? 20 1 1 A DG 14 1_555 A DT 30 1_555 -2.038 -0.471 -0.067 7.639 0.166 -5.867 11 A_DG11:DT27_A A 11 ? A 27 ? 28 1 1 A DG 15 1_555 A DA 29 1_555 -0.031 1.575 -0.315 12.574 -16.426 -20.074 12 A_DG12:DA26_A A 12 ? A 26 ? 8 1 1 A DT 17 1_555 A DA 28 1_555 -0.462 -0.273 0.174 -13.443 -19.577 2.878 13 A_DT14:DA25_A A 14 ? A 25 ? 20 1 1 A DT 18 1_555 A DA 27 1_555 -0.112 -0.008 -0.040 -12.818 -19.279 2.732 14 A_DT15:DA24_A A 15 ? A 24 ? 20 1 1 A DA 19 1_555 A DT 26 1_555 0.240 -0.164 -0.186 -3.158 -0.387 2.204 15 A_DA16:DT23_A A 16 ? A 23 ? 20 1 1 A DG 20 1_555 A DC 25 1_555 -0.466 -0.318 0.000 4.728 1.074 2.884 16 A_DG17:DC22_A A 17 ? A 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DC 43 1_555 A DT 3 1_555 A DA 42 1_555 -0.438 -0.815 3.013 0.599 7.955 31.783 -2.668 0.869 2.727 14.247 -1.073 32.744 1 AA_DG-1DT0:DA39DC40_AA A -1 ? A 40 ? A 0 ? A 39 ? 1 A DT 3 1_555 A DA 42 1_555 A DA 4 1_555 A DT 41 1_555 0.691 -0.808 3.283 0.848 5.997 31.884 -2.484 -1.091 3.101 10.795 -1.526 32.440 2 AA_DT0DA1:DT38DA39_AA A 0 ? A 39 ? A 1 ? A 38 ? 1 A DA 4 1_555 A DT 41 1_555 A DC 5 1_555 A DG 40 1_555 -0.323 -0.218 3.193 1.401 3.942 28.575 -1.287 0.949 3.116 7.933 -2.819 28.873 3 AA_DA1DC2:DG37DT38_AA A 1 ? A 38 ? A 2 ? A 37 ? 1 A DC 5 1_555 A DG 40 1_555 A DG 6 1_555 A DC 39 1_555 0.266 1.236 3.471 1.752 0.915 42.353 1.609 -0.178 3.503 1.266 -2.424 42.397 4 AA_DC2DG3:DC36DG37_AA A 2 ? A 37 ? A 3 ? A 36 ? 1 A DG 6 1_555 A DC 39 1_555 A DA 7 1_555 A DT 38 1_555 0.208 0.229 2.977 -4.290 5.022 28.783 -0.524 -1.241 2.913 9.937 8.490 29.515 5 AA_DG3DA4:DT35DC36_AA A 3 ? A 36 ? A 4 ? A 35 ? 1 A DA 7 1_555 A DT 38 1_555 A DC 8 1_555 A DG 37 1_555 0.937 -1.159 3.317 1.340 -1.393 28.764 -2.008 -1.575 3.407 -2.799 -2.694 28.827 6 AA_DA4DC5:DG34DT35_AA A 4 ? A 35 ? A 5 ? A 34 ? 1 A DC 8 1_555 A DG 37 1_555 A DA 9 1_555 A DT 36 1_555 0.100 1.374 3.395 8.033 -2.684 41.531 2.183 0.705 3.267 -3.738 -11.189 42.349 7 AA_DC5DA6:DT33DG34_AA A 5 ? A 34 ? A 6 ? A 33 ? 1 A DA 9 1_555 A DT 36 1_555 A DG 11 1_555 A DG 32 1_555 1.177 5.025 3.124 13.995 -19.125 76.563 4.352 -0.607 2.178 -15.099 -11.049 79.607 8 AA_DA6DG8:DG29DT33_AA A 6 ? A 33 ? A 8 ? A 29 ? 1 A DA 13 1_555 A DT 33 1_555 A DG 14 1_555 A DT 30 1_555 3.810 1.776 3.170 25.064 13.646 52.352 0.895 -2.200 4.714 14.328 -26.317 59.140 9 AA_DA10DG11:DT27DT30_AA A 10 ? A 30 ? A 11 ? A 27 ? 1 A DG 14 1_555 A DT 30 1_555 A DG 15 1_555 A DA 29 1_555 -1.785 0.642 3.272 -0.702 3.239 40.952 0.559 2.467 3.340 4.621 1.002 41.080 10 AA_DG11DG12:DA26DT27_AA A 11 ? A 27 ? A 12 ? A 26 ? 1 A DG 15 1_555 A DA 29 1_555 A DT 17 1_555 A DA 28 1_555 -0.443 0.125 3.597 -5.536 -6.971 55.534 0.571 0.123 3.585 -7.428 5.899 56.187 11 AA_DG12DT14:DA25DA26_AA A 12 ? A 26 ? A 14 ? A 25 ? 1 A DT 17 1_555 A DA 28 1_555 A DT 18 1_555 A DA 27 1_555 -0.653 -0.050 3.270 0.139 -1.386 34.077 0.134 1.136 3.267 -2.363 -0.237 34.104 12 AA_DT14DT15:DA24DA25_AA A 14 ? A 25 ? A 15 ? A 24 ? 1 A DT 18 1_555 A DA 27 1_555 A DA 19 1_555 A DT 26 1_555 0.855 1.423 3.160 1.066 -3.596 43.447 2.245 -1.054 3.058 -4.846 -1.437 43.601 13 AA_DT15DA16:DT23DA24_AA A 15 ? A 24 ? A 16 ? A 23 ? 1 A DA 19 1_555 A DT 26 1_555 A DG 20 1_555 A DC 25 1_555 0.103 -0.489 3.166 -4.598 5.227 26.758 -2.234 -1.279 2.960 11.059 9.727 27.633 14 AA_DA16DG17:DC22DT23_AA A 16 ? A 23 ? A 17 ? A 22 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9URT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.017008 _atom_sites.fract_transf_matrix[1][2] 0.009820 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019639 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008169 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol BA C H N NA O P # loop_ #