data_9URW # _entry.id 9URW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9URW pdb_00009urw 10.2210/pdb9urw/pdb WWPDB D_1300058519 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-11-11 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9URW _pdbx_database_status.recvd_initial_deposition_date 2025-04-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 5 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, X.' 1 0000-0002-4502-0633 'Luo, Y.' 2 0009-0006-3449-7088 'Ren, Y.' 3 0009-0006-0959-2008 'Huang, L.' 4 0000-0002-2121-365X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of adenosine and ATP-binding DNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, X.' 1 0000-0002-4502-0633 primary 'Luo, Y.' 2 0009-0006-3449-7088 primary 'Ren, Y.' 3 0009-0006-0959-2008 primary 'Huang, L.' 4 0000-0002-2121-365X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (44-MER)' 13618.746 1 ? ? ? ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 7 ? ? ? ? 5 water nat water 18.015 198 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DG)(DT)(DA)(DC)(DG)(DA)(DC)(DA)(DC)(DG)(DG)(DA)(DG)(DG)(DC)(DT)(DT)(DA)(DG) (DT)(DT)(DT)(DG)(DC)(DT)(DA)(DA)(DA)(DT)(DG)(DG)(DT)(DC)(DA)(DT)(DG)(DT)(DC)(DG) (DT)(DA)(DC)(DA) ; _entity_poly.pdbx_seq_one_letter_code_can TGTACGACACGGAGGCTTAGTTTGCTAAATGGTCATGTCGTACA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 'CALCIUM ION' CA 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n 1 7 DA n 1 8 DC n 1 9 DA n 1 10 DC n 1 11 DG n 1 12 DG n 1 13 DA n 1 14 DG n 1 15 DG n 1 16 DC n 1 17 DT n 1 18 DT n 1 19 DA n 1 20 DG n 1 21 DT n 1 22 DT n 1 23 DT n 1 24 DG n 1 25 DC n 1 26 DT n 1 27 DA n 1 28 DA n 1 29 DA n 1 30 DT n 1 31 DG n 1 32 DG n 1 33 DT n 1 34 DC n 1 35 DA n 1 36 DT n 1 37 DG n 1 38 DT n 1 39 DC n 1 40 DG n 1 41 DT n 1 42 DA n 1 43 DC n 1 44 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 44 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 -2 -2 DT DT A . n A 1 2 DG 2 -1 -1 DG DG A . n A 1 3 DT 3 0 0 DT DT A . n A 1 4 DA 4 1 1 DA DA A . n A 1 5 DC 5 2 2 DC DC A . n A 1 6 DG 6 3 3 DG DG A . n A 1 7 DA 7 4 4 DA DA A . n A 1 8 DC 8 5 5 DC DC A . n A 1 9 DA 9 6 6 DA DA A . n A 1 10 DC 10 7 7 DC DC A . n A 1 11 DG 11 8 8 DG DG A . n A 1 12 DG 12 9 9 DG DG A . n A 1 13 DA 13 10 10 DA DA A . n A 1 14 DG 14 11 11 DG DG A . n A 1 15 DG 15 12 12 DG DG A . n A 1 16 DC 16 13 13 DC DC A . n A 1 17 DT 17 14 14 DT DT A . n A 1 18 DT 18 15 15 DT DT A . n A 1 19 DA 19 16 16 DA DA A . n A 1 20 DG 20 17 17 DG DG A . n A 1 21 DT 21 18 18 DT DT A . n A 1 22 DT 22 19 19 DT DT A . n A 1 23 DT 23 20 20 DT DT A . n A 1 24 DG 24 21 21 DG DG A . n A 1 25 DC 25 22 22 DC DC A . n A 1 26 DT 26 23 23 DT DT A . n A 1 27 DA 27 24 24 DA DA A . n A 1 28 DA 28 25 25 DA DA A . n A 1 29 DA 29 26 26 DA DA A . n A 1 30 DT 30 27 27 DT DT A . n A 1 31 DG 31 28 28 DG DG A . n A 1 32 DG 32 29 29 DG DG A . n A 1 33 DT 33 30 30 DT DT A . n A 1 34 DC 34 31 31 DC DC A . n A 1 35 DA 35 32 32 DA DA A . n A 1 36 DT 36 33 33 DT DT A . n A 1 37 DG 37 34 34 DG DG A . n A 1 38 DT 38 35 35 DT DT A . n A 1 39 DC 39 36 36 DC DC A . n A 1 40 DG 40 37 37 DG DG A . n A 1 41 DT 41 38 38 DT DT A . n A 1 42 DA 42 39 39 DA DA A . n A 1 43 DC 43 40 40 DC DC A . n A 1 44 DA 44 41 41 DA DA A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 ADP ? ? ADP ? ? 'SUBJECT OF INVESTIGATION' ? 2 CA ? ? CA ? ? 'SUBJECT OF INVESTIGATION' ? 3 NA ? ? NA ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP 1 101 101 ADP ADP A . C 3 CA 1 102 1 CA CA A . D 3 CA 1 103 2 CA CA A . E 3 CA 1 104 3 CA CA A . F 3 CA 1 105 4 CA CA A . G 4 NA 1 106 1 NA NA A . H 4 NA 1 107 2 NA NA A . I 4 NA 1 108 3 NA NA A . J 4 NA 1 109 4 NA NA A . K 4 NA 1 110 5 NA NA A . L 4 NA 1 111 6 NA NA A . M 4 NA 1 112 7 NA NA A . N 5 HOH 1 201 292 HOH HOH A . N 5 HOH 2 202 384 HOH HOH A . N 5 HOH 3 203 513 HOH HOH A . N 5 HOH 4 204 529 HOH HOH A . N 5 HOH 5 205 441 HOH HOH A . N 5 HOH 6 206 391 HOH HOH A . N 5 HOH 7 207 185 HOH HOH A . N 5 HOH 8 208 359 HOH HOH A . N 5 HOH 9 209 324 HOH HOH A . N 5 HOH 10 210 520 HOH HOH A . N 5 HOH 11 211 182 HOH HOH A . N 5 HOH 12 212 9 HOH HOH A . N 5 HOH 13 213 17 HOH HOH A . N 5 HOH 14 214 154 HOH HOH A . N 5 HOH 15 215 67 HOH HOH A . N 5 HOH 16 216 464 HOH HOH A . N 5 HOH 17 217 190 HOH HOH A . N 5 HOH 18 218 99 HOH HOH A . N 5 HOH 19 219 85 HOH HOH A . N 5 HOH 20 220 219 HOH HOH A . N 5 HOH 21 221 414 HOH HOH A . N 5 HOH 22 222 155 HOH HOH A . N 5 HOH 23 223 179 HOH HOH A . N 5 HOH 24 224 275 HOH HOH A . N 5 HOH 25 225 237 HOH HOH A . N 5 HOH 26 226 152 HOH HOH A . N 5 HOH 27 227 203 HOH HOH A . N 5 HOH 28 228 349 HOH HOH A . N 5 HOH 29 229 128 HOH HOH A . N 5 HOH 30 230 79 HOH HOH A . N 5 HOH 31 231 21 HOH HOH A . N 5 HOH 32 232 89 HOH HOH A . N 5 HOH 33 233 139 HOH HOH A . N 5 HOH 34 234 212 HOH HOH A . N 5 HOH 35 235 127 HOH HOH A . N 5 HOH 36 236 293 HOH HOH A . N 5 HOH 37 237 540 HOH HOH A . N 5 HOH 38 238 181 HOH HOH A . N 5 HOH 39 239 415 HOH HOH A . N 5 HOH 40 240 140 HOH HOH A . N 5 HOH 41 241 151 HOH HOH A . N 5 HOH 42 242 90 HOH HOH A . N 5 HOH 43 243 519 HOH HOH A . N 5 HOH 44 244 27 HOH HOH A . N 5 HOH 45 245 150 HOH HOH A . N 5 HOH 46 246 193 HOH HOH A . N 5 HOH 47 247 78 HOH HOH A . N 5 HOH 48 248 29 HOH HOH A . N 5 HOH 49 249 25 HOH HOH A . N 5 HOH 50 250 10 HOH HOH A . N 5 HOH 51 251 370 HOH HOH A . N 5 HOH 52 252 462 HOH HOH A . N 5 HOH 53 253 38 HOH HOH A . N 5 HOH 54 254 76 HOH HOH A . N 5 HOH 55 255 59 HOH HOH A . N 5 HOH 56 256 162 HOH HOH A . N 5 HOH 57 257 54 HOH HOH A . N 5 HOH 58 258 15 HOH HOH A . N 5 HOH 59 259 118 HOH HOH A . N 5 HOH 60 260 83 HOH HOH A . N 5 HOH 61 261 3 HOH HOH A . N 5 HOH 62 262 62 HOH HOH A . N 5 HOH 63 263 512 HOH HOH A . N 5 HOH 64 264 253 HOH HOH A . N 5 HOH 65 265 36 HOH HOH A . N 5 HOH 66 266 93 HOH HOH A . N 5 HOH 67 267 63 HOH HOH A . N 5 HOH 68 268 80 HOH HOH A . N 5 HOH 69 269 51 HOH HOH A . N 5 HOH 70 270 28 HOH HOH A . N 5 HOH 71 271 14 HOH HOH A . N 5 HOH 72 272 49 HOH HOH A . N 5 HOH 73 273 285 HOH HOH A . N 5 HOH 74 274 142 HOH HOH A . N 5 HOH 75 275 41 HOH HOH A . N 5 HOH 76 276 16 HOH HOH A . N 5 HOH 77 277 104 HOH HOH A . N 5 HOH 78 278 73 HOH HOH A . N 5 HOH 79 279 55 HOH HOH A . N 5 HOH 80 280 43 HOH HOH A . N 5 HOH 81 281 157 HOH HOH A . N 5 HOH 82 282 52 HOH HOH A . N 5 HOH 83 283 511 HOH HOH A . N 5 HOH 84 284 8 HOH HOH A . N 5 HOH 85 285 30 HOH HOH A . N 5 HOH 86 286 172 HOH HOH A . N 5 HOH 87 287 58 HOH HOH A . N 5 HOH 88 288 523 HOH HOH A . N 5 HOH 89 289 57 HOH HOH A . N 5 HOH 90 290 177 HOH HOH A . N 5 HOH 91 291 325 HOH HOH A . N 5 HOH 92 292 44 HOH HOH A . N 5 HOH 93 293 188 HOH HOH A . N 5 HOH 94 294 13 HOH HOH A . N 5 HOH 95 295 23 HOH HOH A . N 5 HOH 96 296 136 HOH HOH A . N 5 HOH 97 297 465 HOH HOH A . N 5 HOH 98 298 186 HOH HOH A . N 5 HOH 99 299 60 HOH HOH A . N 5 HOH 100 300 45 HOH HOH A . N 5 HOH 101 301 37 HOH HOH A . N 5 HOH 102 302 130 HOH HOH A . N 5 HOH 103 303 123 HOH HOH A . N 5 HOH 104 304 315 HOH HOH A . N 5 HOH 105 305 32 HOH HOH A . N 5 HOH 106 306 258 HOH HOH A . N 5 HOH 107 307 18 HOH HOH A . N 5 HOH 108 308 215 HOH HOH A . N 5 HOH 109 309 176 HOH HOH A . N 5 HOH 110 310 198 HOH HOH A . N 5 HOH 111 311 56 HOH HOH A . N 5 HOH 112 312 180 HOH HOH A . N 5 HOH 113 313 178 HOH HOH A . N 5 HOH 114 314 53 HOH HOH A . N 5 HOH 115 315 410 HOH HOH A . N 5 HOH 116 316 87 HOH HOH A . N 5 HOH 117 317 69 HOH HOH A . N 5 HOH 118 318 74 HOH HOH A . N 5 HOH 119 319 77 HOH HOH A . N 5 HOH 120 320 11 HOH HOH A . N 5 HOH 121 321 66 HOH HOH A . N 5 HOH 122 322 35 HOH HOH A . N 5 HOH 123 323 65 HOH HOH A . N 5 HOH 124 324 125 HOH HOH A . N 5 HOH 125 325 92 HOH HOH A . N 5 HOH 126 326 20 HOH HOH A . N 5 HOH 127 327 39 HOH HOH A . N 5 HOH 128 328 147 HOH HOH A . N 5 HOH 129 329 86 HOH HOH A . N 5 HOH 130 330 126 HOH HOH A . N 5 HOH 131 331 168 HOH HOH A . N 5 HOH 132 332 163 HOH HOH A . N 5 HOH 133 333 563 HOH HOH A . N 5 HOH 134 334 159 HOH HOH A . N 5 HOH 135 335 146 HOH HOH A . N 5 HOH 136 336 2 HOH HOH A . N 5 HOH 137 337 160 HOH HOH A . N 5 HOH 138 338 170 HOH HOH A . N 5 HOH 139 339 322 HOH HOH A . N 5 HOH 140 340 264 HOH HOH A . N 5 HOH 141 341 33 HOH HOH A . N 5 HOH 142 342 98 HOH HOH A . N 5 HOH 143 343 116 HOH HOH A . N 5 HOH 144 344 91 HOH HOH A . N 5 HOH 145 345 24 HOH HOH A . N 5 HOH 146 346 46 HOH HOH A . N 5 HOH 147 347 197 HOH HOH A . N 5 HOH 148 348 295 HOH HOH A . N 5 HOH 149 349 22 HOH HOH A . N 5 HOH 150 350 196 HOH HOH A . N 5 HOH 151 351 161 HOH HOH A . N 5 HOH 152 352 48 HOH HOH A . N 5 HOH 153 353 412 HOH HOH A . N 5 HOH 154 354 84 HOH HOH A . N 5 HOH 155 355 229 HOH HOH A . N 5 HOH 156 356 47 HOH HOH A . N 5 HOH 157 357 106 HOH HOH A . N 5 HOH 158 358 239 HOH HOH A . N 5 HOH 159 359 5 HOH HOH A . N 5 HOH 160 360 70 HOH HOH A . N 5 HOH 161 361 19 HOH HOH A . N 5 HOH 162 362 158 HOH HOH A . N 5 HOH 163 363 61 HOH HOH A . N 5 HOH 164 364 418 HOH HOH A . N 5 HOH 165 365 97 HOH HOH A . N 5 HOH 166 366 40 HOH HOH A . N 5 HOH 167 367 148 HOH HOH A . N 5 HOH 168 368 522 HOH HOH A . N 5 HOH 169 369 527 HOH HOH A . N 5 HOH 170 370 556 HOH HOH A . N 5 HOH 171 371 75 HOH HOH A . N 5 HOH 172 372 223 HOH HOH A . N 5 HOH 173 373 567 HOH HOH A . N 5 HOH 174 374 206 HOH HOH A . N 5 HOH 175 375 492 HOH HOH A . N 5 HOH 176 376 132 HOH HOH A . N 5 HOH 177 377 382 HOH HOH A . N 5 HOH 178 378 183 HOH HOH A . N 5 HOH 179 379 246 HOH HOH A . N 5 HOH 180 380 289 HOH HOH A . N 5 HOH 181 381 438 HOH HOH A . N 5 HOH 182 382 175 HOH HOH A . N 5 HOH 183 383 71 HOH HOH A . N 5 HOH 184 384 475 HOH HOH A . N 5 HOH 185 385 362 HOH HOH A . N 5 HOH 186 386 129 HOH HOH A . N 5 HOH 187 387 532 HOH HOH A . N 5 HOH 188 388 6 HOH HOH A . N 5 HOH 189 389 12 HOH HOH A . N 5 HOH 190 390 34 HOH HOH A . N 5 HOH 191 391 371 HOH HOH A . N 5 HOH 192 392 226 HOH HOH A . N 5 HOH 193 393 538 HOH HOH A . N 5 HOH 194 394 335 HOH HOH A . N 5 HOH 195 395 134 HOH HOH A . N 5 HOH 196 396 367 HOH HOH A . N 5 HOH 197 397 256 HOH HOH A . N 5 HOH 198 398 228 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.1_5286 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 94.476 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9URW _cell.details ? _cell.formula_units_Z ? _cell.length_a 81.741 _cell.length_a_esd ? _cell.length_b 27.837 _cell.length_b_esd ? _cell.length_c 51.671 _cell.length_c_esd ? _cell.volume 117214.859 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9URW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9URW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M Calcium chloride dihydrate, 0.05 M HEPES pH7.5, 29% v/v Polyethylene glycol 400, 0.002 M Spermine tetrahydrochloride, 0.01 M barium chloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-06-07 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979183 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL02U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979183 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL02U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 14.56 _reflns.entry_id 9URW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.52 _reflns.d_resolution_low 33.24 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17121 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.042 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.52 _reflns_shell.d_res_low 1.60 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2557 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.576 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.576 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.013 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 22.82 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9URW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.52 _refine.ls_d_res_low 33.24 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17019 _refine.ls_number_reflns_R_free 809 _refine.ls_number_reflns_R_work 16210 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.59 _refine.ls_percent_reflns_R_free 4.75 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1823 _refine.ls_R_factor_R_free 0.2088 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1809 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.2942 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1721 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.52 _refine_hist.d_res_low 33.24 _refine_hist.number_atoms_solvent 198 _refine_hist.number_atoms_total 1140 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 904 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0185 ? 1043 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 2.0497 ? 1610 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0869 ? 179 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0217 ? 45 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 34.2880 ? 491 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.52 1.62 . . 131 2732 95.47 . . . . 0.2432 . . . . . . . . . . . . . . . 0.2857 'X-RAY DIFFRACTION' 1.62 1.74 . . 133 2706 94.66 . . . . 0.2079 . . . . . . . . . . . . . . . 0.2606 'X-RAY DIFFRACTION' 1.74 1.92 . . 119 2619 91.85 . . . . 0.1937 . . . . . . . . . . . . . . . 0.2303 'X-RAY DIFFRACTION' 1.92 2.19 . . 152 2571 90.20 . . . . 0.1941 . . . . . . . . . . . . . . . 0.2604 'X-RAY DIFFRACTION' 2.19 2.76 . . 119 2756 93.98 . . . . 0.2042 . . . . . . . . . . . . . . . 0.2353 'X-RAY DIFFRACTION' 2.76 33.24 . . 155 2826 95.39 . . . . 0.1517 . . . . . . . . . . . . . . . 0.1655 # _struct.entry_id 9URW _struct.title 'Crystal structure of Ade1304 DNA aptamer (1304b9) bound to ADP' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9URW _struct_keywords.text 'Adenosine/ATP DNA aptamer, ADP, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9URW _struct_ref.pdbx_db_accession 9URW _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9URW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 44 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9URW _struct_ref_seq.db_align_beg -2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 41 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -2 _struct_ref_seq.pdbx_auth_seq_align_end 41 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1220 ? 1 MORE -64 ? 1 'SSA (A^2)' 15080 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 OP1 ? ? ? 1_555 C CA . CA ? ? A DG -1 A CA 102 4_445 ? ? ? ? ? ? ? 2.357 ? ? metalc2 metalc ? ? A DG 2 OP2 ? ? ? 1_555 D CA . CA ? ? A DG -1 A CA 103 4_445 ? ? ? ? ? ? ? 2.271 ? ? metalc3 metalc ? ? A DA 9 OP2 ? ? ? 1_555 E CA . CA ? ? A DA 6 A CA 104 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc4 metalc ? ? A DC 10 O2 ? ? ? 1_555 E CA . CA ? ? A DC 7 A CA 104 1_555 ? ? ? ? ? ? ? 2.540 ? ? metalc5 metalc ? ? A DC 16 OP2 ? ? ? 1_555 I NA . NA ? ? A DC 13 A NA 108 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc6 metalc ? ? A DT 22 OP2 ? ? ? 1_555 C CA . CA ? ? A DT 19 A CA 102 4_456 ? ? ? ? ? ? ? 2.373 ? ? metalc7 metalc ? ? A DT 23 OP2 ? ? ? 1_555 C CA . CA ? ? A DT 20 A CA 102 4_456 ? ? ? ? ? ? ? 2.296 ? ? metalc8 metalc ? ? A DT 23 OP1 ? ? ? 1_555 D CA . CA ? ? A DT 20 A CA 103 4_456 ? ? ? ? ? ? ? 2.319 ? ? metalc9 metalc ? ? A DG 24 O6 ? ? ? 1_555 I NA . NA ? ? A DG 21 A NA 108 4_456 ? ? ? ? ? ? ? 2.245 ? ? metalc10 metalc ? ? A DC 25 OP1 ? ? ? 1_555 C CA . CA ? ? A DC 22 A CA 102 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc11 metalc ? ? A DC 25 OP2 ? ? ? 1_555 D CA . CA ? ? A DC 22 A CA 103 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc12 metalc ? ? A DT 30 O2 ? ? ? 1_555 M NA . NA ? ? A DT 27 A NA 112 1_555 ? ? ? ? ? ? ? 2.840 ? ? metalc13 metalc ? ? A DG 31 OP2 ? ? ? 1_555 G NA . NA ? ? A DG 28 A NA 106 2_555 ? ? ? ? ? ? ? 2.278 ? ? metalc14 metalc ? ? A DG 32 OP1 ? ? ? 1_555 E CA . CA ? ? A DG 29 A CA 104 2_555 ? ? ? ? ? ? ? 2.262 ? ? metalc15 metalc ? ? A DT 33 O4 ? ? ? 1_555 M NA . NA ? ? A DT 30 A NA 112 1_555 ? ? ? ? ? ? ? 2.810 ? ? metalc16 metalc ? ? A DA 42 OP1 ? ? ? 1_555 H NA . NA ? ? A DA 39 A NA 107 2_545 ? ? ? ? ? ? ? 2.317 ? ? metalc17 metalc ? ? B ADP . O2A ? ? ? 1_555 L NA . NA ? ? A ADP 101 A NA 111 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc18 metalc ? ? C CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 102 A HOH 205 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc19 metalc ? ? C CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 102 A HOH 336 4_455 ? ? ? ? ? ? ? 2.465 ? ? metalc20 metalc ? ? D CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 103 A HOH 258 4_446 ? ? ? ? ? ? ? 2.339 ? ? metalc21 metalc ? ? D CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 103 A HOH 327 4_446 ? ? ? ? ? ? ? 2.513 ? ? metalc22 metalc ? ? D CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 103 A HOH 359 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc23 metalc ? ? E CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 104 A HOH 271 2_555 ? ? ? ? ? ? ? 2.444 ? ? metalc24 metalc ? ? E CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 104 A HOH 294 1_555 ? ? ? ? ? ? ? 2.485 ? ? metalc25 metalc ? ? E CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 104 A HOH 322 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc26 metalc ? ? F CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 105 A HOH 295 1_566 ? ? ? ? ? ? ? 2.784 ? ? metalc27 metalc ? ? F CA . CA ? ? ? 1_555 N HOH . O ? ? A CA 105 A HOH 336 1_566 ? ? ? ? ? ? ? 3.140 ? ? metalc28 metalc ? ? G NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 106 A HOH 318 1_565 ? ? ? ? ? ? ? 2.137 ? ? metalc29 metalc ? ? G NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 106 A HOH 321 1_555 ? ? ? ? ? ? ? 2.585 ? ? metalc30 metalc ? ? G NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 106 A HOH 349 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc31 metalc ? ? G NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 106 A HOH 360 2_555 ? ? ? ? ? ? ? 2.108 ? ? metalc32 metalc ? ? G NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 106 A HOH 367 2_555 ? ? ? ? ? ? ? 2.581 ? ? metalc33 metalc ? ? H NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 107 A HOH 356 1_555 ? ? ? ? ? ? ? 2.251 ? ? metalc34 metalc ? ? H NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 107 A HOH 365 2_565 ? ? ? ? ? ? ? 2.246 ? ? metalc35 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 108 A HOH 255 1_545 ? ? ? ? ? ? ? 1.923 ? ? metalc36 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 108 A HOH 257 4_455 ? ? ? ? ? ? ? 2.178 ? ? metalc37 metalc ? ? I NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 108 A HOH 331 1_555 ? ? ? ? ? ? ? 2.893 ? ? metalc38 metalc ? ? K NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 110 A HOH 232 1_555 ? ? ? ? ? ? ? 2.244 ? ? metalc39 metalc ? ? K NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 110 A HOH 232 2_555 ? ? ? ? ? ? ? 2.244 ? ? metalc40 metalc ? ? K NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 110 A HOH 279 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc41 metalc ? ? K NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 110 A HOH 279 2_555 ? ? ? ? ? ? ? 2.182 ? ? metalc42 metalc ? ? K NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 110 A HOH 313 1_555 ? ? ? ? ? ? ? 2.114 ? ? metalc43 metalc ? ? K NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 110 A HOH 313 2_555 ? ? ? ? ? ? ? 2.114 ? ? metalc44 metalc ? ? K NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 110 A HOH 368 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc45 metalc ? ? K NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 110 A HOH 368 2_555 ? ? ? ? ? ? ? 2.066 ? ? metalc46 metalc ? ? L NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 111 A HOH 216 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc47 metalc ? ? L NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 111 A HOH 297 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc48 metalc ? ? L NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 111 A HOH 384 1_555 ? ? ? ? ? ? ? 2.198 ? ? metalc49 metalc ? ? M NA . NA ? ? ? 1_555 N HOH . O ? ? A NA 112 A HOH 366 1_555 ? ? ? ? ? ? ? 2.942 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 43 N3 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 43 O2 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 43 N4 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 42 N1 ? ? A DT 0 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 42 N6 ? ? A DT 0 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 41 N3 ? ? A DA 1 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 41 O4 ? ? A DA 1 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 40 N1 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 40 O6 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 40 N2 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 39 N3 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 39 O2 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 39 N4 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 38 N3 ? ? A DA 4 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 38 O4 ? ? A DA 4 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 37 N1 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 37 O6 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 37 N2 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 36 N3 ? ? A DA 6 A DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 36 O4 ? ? A DA 6 A DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 32 N7 ? ? A DG 8 A DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 32 O6 ? ? A DG 8 A DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog23 hydrog ? ? A DA 13 N6 ? ? ? 1_555 A DG 31 N3 ? ? A DA 10 A DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? A DA 13 N7 ? ? ? 1_555 A DG 31 N2 ? ? A DA 10 A DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog25 hydrog ? ? A DA 13 N1 ? ? ? 1_555 A DT 33 N3 ? ? A DA 10 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 13 N6 ? ? ? 1_555 A DT 33 O4 ? ? A DA 10 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DC 16 N3 ? ? A DG 11 A DC 13 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog28 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DT 30 O2 ? ? A DG 11 A DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A DG 14 O6 ? ? ? 1_555 A DT 30 N3 ? ? A DG 11 A DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DA 29 N1 ? ? A DG 12 A DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DA 29 N6 ? ? A DG 12 A DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? A DT 17 N3 ? ? ? 1_555 A DA 28 N1 ? ? A DT 14 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 17 O4 ? ? ? 1_555 A DA 28 N6 ? ? A DT 14 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 18 N3 ? ? ? 1_555 A DA 27 N1 ? ? A DT 15 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 18 O4 ? ? ? 1_555 A DA 27 N6 ? ? A DT 15 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 19 N1 ? ? ? 1_555 A DT 26 N3 ? ? A DA 16 A DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 19 N6 ? ? ? 1_555 A DT 26 O4 ? ? A DA 16 A DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DC 25 N3 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DC 25 O2 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 20 O6 ? ? ? 1_555 A DC 25 N4 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 32 N2 ? ? ? 1_555 A DA 35 N7 ? ? A DG 29 A DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A DG 32 N3 ? ? ? 1_555 A DA 35 N6 ? ? A DG 29 A DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 OP2 ? A DT 22 ? A DT 19 ? 1_555 82.0 ? 2 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 OP2 ? A DT 23 ? A DT 20 ? 1_555 79.5 ? 3 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 OP2 ? A DT 23 ? A DT 20 ? 1_555 2.5 ? 4 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 OP1 ? A DC 25 ? A DC 22 ? 1_555 68.7 ? 5 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 OP1 ? A DC 25 ? A DC 22 ? 1_555 14.1 ? 6 OP2 ? A DT 23 ? A DT 20 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 OP1 ? A DC 25 ? A DC 22 ? 1_555 12.0 ? 7 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? N HOH . ? A HOH 205 ? 1_555 68.9 ? 8 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? N HOH . ? A HOH 205 ? 1_555 14.3 ? 9 OP2 ? A DT 23 ? A DT 20 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? N HOH . ? A HOH 205 ? 1_555 12.3 ? 10 OP1 ? A DC 25 ? A DC 22 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? N HOH . ? A HOH 205 ? 1_555 0.9 ? 11 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? N HOH . ? A HOH 336 ? 4_455 66.5 ? 12 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? N HOH . ? A HOH 336 ? 4_455 15.9 ? 13 OP2 ? A DT 23 ? A DT 20 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? N HOH . ? A HOH 336 ? 4_455 13.7 ? 14 OP1 ? A DC 25 ? A DC 22 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? N HOH . ? A HOH 336 ? 4_455 2.4 ? 15 O ? N HOH . ? A HOH 205 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? N HOH . ? A HOH 336 ? 4_455 3.0 ? 16 OP2 ? A DG 2 ? A DG -1 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 OP1 ? A DT 23 ? A DT 20 ? 1_555 56.8 ? 17 OP2 ? A DG 2 ? A DG -1 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 OP2 ? A DC 25 ? A DC 22 ? 1_555 45.6 ? 18 OP1 ? A DT 23 ? A DT 20 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 OP2 ? A DC 25 ? A DC 22 ? 1_555 11.5 ? 19 OP2 ? A DG 2 ? A DG -1 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 258 ? 4_446 41.3 ? 20 OP1 ? A DT 23 ? A DT 20 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 258 ? 4_446 15.6 ? 21 OP2 ? A DC 25 ? A DC 22 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 258 ? 4_446 4.8 ? 22 OP2 ? A DG 2 ? A DG -1 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 327 ? 4_446 43.6 ? 23 OP1 ? A DT 23 ? A DT 20 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 327 ? 4_446 13.2 ? 24 OP2 ? A DC 25 ? A DC 22 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 327 ? 4_446 2.3 ? 25 O ? N HOH . ? A HOH 258 ? 4_446 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 327 ? 4_446 2.5 ? 26 OP2 ? A DG 2 ? A DG -1 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 359 ? 1_555 44.5 ? 27 OP1 ? A DT 23 ? A DT 20 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 359 ? 1_555 12.5 ? 28 OP2 ? A DC 25 ? A DC 22 ? 1_555 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 359 ? 1_555 3.4 ? 29 O ? N HOH . ? A HOH 258 ? 4_446 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 359 ? 1_555 3.4 ? 30 O ? N HOH . ? A HOH 327 ? 4_446 CA ? D CA . ? A CA 103 ? 4_445 O ? N HOH . ? A HOH 359 ? 1_555 2.1 ? 31 OP2 ? A DA 9 ? A DA 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O2 ? A DC 10 ? A DC 7 ? 1_555 83.0 ? 32 OP2 ? A DA 9 ? A DA 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 OP1 ? A DG 32 ? A DG 29 ? 1_555 74.9 ? 33 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 OP1 ? A DG 32 ? A DG 29 ? 1_555 68.5 ? 34 OP2 ? A DA 9 ? A DA 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 271 ? 2_555 97.7 ? 35 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 271 ? 2_555 150.6 ? 36 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 271 ? 2_555 83.3 ? 37 OP2 ? A DA 9 ? A DA 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 294 ? 1_555 87.6 ? 38 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 294 ? 1_555 130.7 ? 39 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 294 ? 1_555 152.8 ? 40 O ? N HOH . ? A HOH 271 ? 2_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 294 ? 1_555 78.5 ? 41 OP2 ? A DA 9 ? A DA 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 322 ? 1_555 93.0 ? 42 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 322 ? 1_555 73.5 ? 43 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 322 ? 1_555 18.4 ? 44 O ? N HOH . ? A HOH 271 ? 2_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 322 ? 1_555 77.1 ? 45 O ? N HOH . ? A HOH 294 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? N HOH . ? A HOH 322 ? 1_555 155.5 ? 46 OP2 ? A DC 16 ? A DC 13 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O6 ? A DG 24 ? A DG 21 ? 1_555 132.9 ? 47 OP2 ? A DC 16 ? A DC 13 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O ? N HOH . ? A HOH 255 ? 1_545 92.0 ? 48 O6 ? A DG 24 ? A DG 21 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O ? N HOH . ? A HOH 255 ? 1_545 134.9 ? 49 OP2 ? A DC 16 ? A DC 13 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O ? N HOH . ? A HOH 257 ? 4_455 94.1 ? 50 O6 ? A DG 24 ? A DG 21 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O ? N HOH . ? A HOH 257 ? 4_455 44.4 ? 51 O ? N HOH . ? A HOH 255 ? 1_545 NA ? I NA . ? A NA 108 ? 1_555 O ? N HOH . ? A HOH 257 ? 4_455 159.7 ? 52 OP2 ? A DC 16 ? A DC 13 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O ? N HOH . ? A HOH 331 ? 1_555 72.2 ? 53 O6 ? A DG 24 ? A DG 21 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 O ? N HOH . ? A HOH 331 ? 1_555 144.1 ? 54 O ? N HOH . ? A HOH 255 ? 1_545 NA ? I NA . ? A NA 108 ? 1_555 O ? N HOH . ? A HOH 331 ? 1_555 39.9 ? 55 O ? N HOH . ? A HOH 257 ? 4_455 NA ? I NA . ? A NA 108 ? 1_555 O ? N HOH . ? A HOH 331 ? 1_555 124.9 ? 56 O2 ? A DT 30 ? A DT 27 ? 1_555 NA ? M NA . ? A NA 112 ? 1_555 O4 ? A DT 33 ? A DT 30 ? 1_555 85.6 ? 57 O2 ? A DT 30 ? A DT 27 ? 1_555 NA ? M NA . ? A NA 112 ? 1_555 O ? N HOH . ? A HOH 366 ? 1_555 134.9 ? 58 O4 ? A DT 33 ? A DT 30 ? 1_555 NA ? M NA . ? A NA 112 ? 1_555 O ? N HOH . ? A HOH 366 ? 1_555 120.2 ? 59 OP2 ? A DG 31 ? A DG 28 ? 1_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 318 ? 1_565 45.1 ? 60 OP2 ? A DG 31 ? A DG 28 ? 1_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 321 ? 1_555 44.7 ? 61 O ? N HOH . ? A HOH 318 ? 1_565 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 321 ? 1_555 5.5 ? 62 OP2 ? A DG 31 ? A DG 28 ? 1_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 349 ? 1_555 45.1 ? 63 O ? N HOH . ? A HOH 318 ? 1_565 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 349 ? 1_555 1.6 ? 64 O ? N HOH . ? A HOH 321 ? 1_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 349 ? 1_555 7.1 ? 65 OP2 ? A DG 31 ? A DG 28 ? 1_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 360 ? 2_555 51.6 ? 66 O ? N HOH . ? A HOH 318 ? 1_565 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 360 ? 2_555 6.5 ? 67 O ? N HOH . ? A HOH 321 ? 1_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 360 ? 2_555 9.4 ? 68 O ? N HOH . ? A HOH 349 ? 1_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 360 ? 2_555 6.5 ? 69 OP2 ? A DG 31 ? A DG 28 ? 1_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 367 ? 2_555 49.7 ? 70 O ? N HOH . ? A HOH 318 ? 1_565 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 367 ? 2_555 7.5 ? 71 O ? N HOH . ? A HOH 321 ? 1_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 367 ? 2_555 12.6 ? 72 O ? N HOH . ? A HOH 349 ? 1_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 367 ? 2_555 6.3 ? 73 O ? N HOH . ? A HOH 360 ? 2_555 NA ? G NA . ? A NA 106 ? 2_555 O ? N HOH . ? A HOH 367 ? 2_555 5.8 ? 74 OP1 ? A DA 42 ? A DA 39 ? 1_555 NA ? H NA . ? A NA 107 ? 2_545 O ? N HOH . ? A HOH 356 ? 1_555 63.3 ? 75 OP1 ? A DA 42 ? A DA 39 ? 1_555 NA ? H NA . ? A NA 107 ? 2_545 O ? N HOH . ? A HOH 365 ? 2_565 65.1 ? 76 O ? N HOH . ? A HOH 356 ? 1_555 NA ? H NA . ? A NA 107 ? 2_545 O ? N HOH . ? A HOH 365 ? 2_565 4.0 ? 77 O2A ? B ADP . ? A ADP 101 ? 1_555 NA ? L NA . ? A NA 111 ? 1_555 O ? N HOH . ? A HOH 216 ? 1_555 73.7 ? 78 O2A ? B ADP . ? A ADP 101 ? 1_555 NA ? L NA . ? A NA 111 ? 1_555 O ? N HOH . ? A HOH 297 ? 1_555 91.4 ? 79 O ? N HOH . ? A HOH 216 ? 1_555 NA ? L NA . ? A NA 111 ? 1_555 O ? N HOH . ? A HOH 297 ? 1_555 152.7 ? 80 O2A ? B ADP . ? A ADP 101 ? 1_555 NA ? L NA . ? A NA 111 ? 1_555 O ? N HOH . ? A HOH 384 ? 1_555 142.9 ? 81 O ? N HOH . ? A HOH 216 ? 1_555 NA ? L NA . ? A NA 111 ? 1_555 O ? N HOH . ? A HOH 384 ? 1_555 94.9 ? 82 O ? N HOH . ? A HOH 297 ? 1_555 NA ? L NA . ? A NA 111 ? 1_555 O ? N HOH . ? A HOH 384 ? 1_555 83.3 ? 83 O ? N HOH . ? A HOH 295 ? 1_566 CA ? F CA . ? A CA 105 ? 1_555 O ? N HOH . ? A HOH 336 ? 1_566 91.9 ? 84 O ? N HOH . ? A HOH 232 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 232 ? 2_555 98.4 ? 85 O ? N HOH . ? A HOH 232 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 279 ? 1_555 52.5 ? 86 O ? N HOH . ? A HOH 232 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 279 ? 1_555 134.8 ? 87 O ? N HOH . ? A HOH 232 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 279 ? 2_555 134.8 ? 88 O ? N HOH . ? A HOH 232 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 279 ? 2_555 52.5 ? 89 O ? N HOH . ? A HOH 279 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 279 ? 2_555 171.5 ? 90 O ? N HOH . ? A HOH 232 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 313 ? 1_555 130.8 ? 91 O ? N HOH . ? A HOH 232 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 313 ? 1_555 130.8 ? 92 O ? N HOH . ? A HOH 279 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 313 ? 1_555 85.7 ? 93 O ? N HOH . ? A HOH 279 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 313 ? 1_555 85.7 ? 94 O ? N HOH . ? A HOH 232 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 313 ? 2_555 130.8 ? 95 O ? N HOH . ? A HOH 232 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 313 ? 2_555 130.8 ? 96 O ? N HOH . ? A HOH 279 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 313 ? 2_555 85.7 ? 97 O ? N HOH . ? A HOH 279 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 313 ? 2_555 85.7 ? 98 O ? N HOH . ? A HOH 313 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 313 ? 2_555 0.0 ? 99 O ? N HOH . ? A HOH 232 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 1_555 49.2 ? 100 O ? N HOH . ? A HOH 232 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 1_555 49.2 ? 101 O ? N HOH . ? A HOH 279 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 1_555 94.3 ? 102 O ? N HOH . ? A HOH 279 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 1_555 94.3 ? 103 O ? N HOH . ? A HOH 313 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 1_555 180.0 ? 104 O ? N HOH . ? A HOH 313 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 1_555 180.0 ? 105 O ? N HOH . ? A HOH 232 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 2_555 49.2 ? 106 O ? N HOH . ? A HOH 232 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 2_555 49.2 ? 107 O ? N HOH . ? A HOH 279 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 2_555 94.3 ? 108 O ? N HOH . ? A HOH 279 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 2_555 94.3 ? 109 O ? N HOH . ? A HOH 313 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 2_555 180.0 ? 110 O ? N HOH . ? A HOH 313 ? 2_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 2_555 180.0 ? 111 O ? N HOH . ? A HOH 368 ? 1_555 NA ? K NA . ? A NA 110 ? 1_555 O ? N HOH . ? A HOH 368 ? 2_555 0.0 ? # _pdbx_entry_details.entry_id 9URW _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H3 A DT 19 ? ? O A HOH 204 ? ? 1.43 2 1 O A HOH 203 ? ? O A HOH 210 ? ? 1.54 3 1 O A HOH 237 ? ? O A HOH 302 ? ? 1.56 4 1 OP2 A DT 35 ? ? O A HOH 201 ? ? 1.70 5 1 O A HOH 377 ? ? O A HOH 395 ? ? 1.87 6 1 OP1 A DT 35 ? ? O A HOH 202 ? ? 1.87 7 1 O A HOH 308 ? ? O A HOH 338 ? ? 1.88 8 1 O1A A ADP 101 ? ? O A HOH 203 ? ? 1.88 9 1 O A HOH 212 ? ? O A HOH 221 ? ? 1.90 10 1 O A HOH 382 ? ? O A HOH 396 ? ? 1.91 11 1 O A HOH 221 ? ? O A HOH 239 ? ? 1.92 12 1 O A HOH 232 ? ? O A HOH 279 ? ? 1.96 13 1 O4 A DT 19 ? ? O A HOH 204 ? ? 1.98 14 1 OP1 A DC 22 ? ? O A HOH 205 ? ? 1.99 15 1 O A HOH 220 ? ? O A HOH 373 ? ? 2.00 16 1 O A HOH 260 ? ? O A HOH 381 ? ? 2.00 17 1 N3 A DT 19 ? ? O A HOH 204 ? ? 2.03 18 1 OP1 A DT 14 ? ? O A HOH 206 ? ? 2.04 19 1 O A HOH 209 ? ? O A HOH 288 ? ? 2.07 20 1 OP1 A DT 23 ? ? O A HOH 207 ? ? 2.07 21 1 O3B A ADP 101 ? ? O A HOH 208 ? ? 2.08 22 1 O A HOH 212 ? ? O A HOH 386 ? ? 2.08 23 1 O A HOH 203 ? ? O A HOH 243 ? ? 2.10 24 1 O A HOH 242 ? ? O A HOH 380 ? ? 2.11 25 1 O A HOH 266 ? ? O A HOH 390 ? ? 2.17 26 1 O A HOH 388 ? ? O A HOH 392 ? ? 2.17 27 1 O A HOH 273 ? ? O A HOH 379 ? ? 2.19 28 1 O A HOH 354 ? ? O A HOH 388 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 375 ? ? 1_555 O A HOH 393 ? ? 1_544 1.54 2 1 O A HOH 251 ? ? 1_555 O A HOH 270 ? ? 4_445 1.87 3 1 O A HOH 255 ? ? 1_555 O A HOH 331 ? ? 1_565 1.88 4 1 O A HOH 379 ? ? 1_555 O A HOH 386 ? ? 4_446 1.93 5 1 O A HOH 218 ? ? 1_555 O A HOH 303 ? ? 4_445 2.01 6 1 O A HOH 264 ? ? 1_555 O A HOH 310 ? ? 2_565 2.02 7 1 O A HOH 251 ? ? 1_555 O A HOH 386 ? ? 1_544 2.03 8 1 O A HOH 226 ? ? 1_555 O A HOH 351 ? ? 2_555 2.06 9 1 O A HOH 251 ? ? 1_555 O A HOH 307 ? ? 4_445 2.08 10 1 OP1 A DG -1 ? ? 1_555 O A HOH 205 ? ? 4_445 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 7 ? ? "C3'" A DC 7 ? ? 1.349 1.419 -0.070 0.006 N 2 1 "O5'" A DG 8 ? ? "C5'" A DG 8 ? ? 1.261 1.418 -0.157 0.025 N 3 1 "O3'" A DG 17 ? ? "C3'" A DG 17 ? ? 1.383 1.419 -0.036 0.006 N 4 1 "O3'" A DA 24 ? ? "C3'" A DA 24 ? ? 1.369 1.419 -0.050 0.006 N 5 1 "O3'" A DA 26 ? ? "C3'" A DA 26 ? ? 1.379 1.419 -0.040 0.006 N 6 1 "O3'" A DT 35 ? ? "C3'" A DT 35 ? ? 1.381 1.419 -0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DA 1 ? ? P A DA 1 ? ? OP2 A DA 1 ? ? 97.54 105.70 -8.16 0.90 N 2 1 "C3'" A DA 1 ? ? "O3'" A DA 1 ? ? P A DC 2 ? ? 127.19 119.70 7.49 1.20 Y 3 1 OP1 A DG 8 ? ? P A DG 8 ? ? OP2 A DG 8 ? ? 131.15 119.60 11.55 1.50 N 4 1 OP1 A DG 9 ? ? P A DG 9 ? ? OP2 A DG 9 ? ? 131.73 119.60 12.13 1.50 N 5 1 "O5'" A DG 9 ? ? P A DG 9 ? ? OP2 A DG 9 ? ? 97.22 105.70 -8.48 0.90 N 6 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.40 108.30 2.10 0.30 N 7 1 "O4'" A DT 15 ? ? "C1'" A DT 15 ? ? N1 A DT 15 ? ? 102.94 108.00 -5.06 0.70 N 8 1 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.27 108.30 1.97 0.30 N 9 1 "O4'" A DG 28 ? ? "C1'" A DG 28 ? ? N9 A DG 28 ? ? 111.11 108.30 2.81 0.30 N 10 1 "O4'" A DT 30 ? ? "C1'" A DT 30 ? ? N1 A DT 30 ? ? 110.29 108.30 1.99 0.30 N 11 1 "O4'" A DC 31 ? ? "C1'" A DC 31 ? ? N1 A DC 31 ? ? 110.45 108.30 2.15 0.30 N 12 1 "O5'" A DC 40 ? ? P A DC 40 ? ? OP2 A DC 40 ? ? 98.96 105.70 -6.74 0.90 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 110 ? K NA . 2 1 A HOH 313 ? N HOH . 3 1 A HOH 368 ? N HOH . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -10.23402049 -4.48832568434 -6.32408409443 0.124383051025 ? -0.012615102129 ? 0.0173429082912 ? 0.100765424574 ? 0.0135494444858 ? 0.104579574848 ? 0.535488237575 ? 0.792259172363 ? 1.42543153784 ? 1.67255873698 ? 2.63412896932 ? 4.36896840543 ? 0.121196439149 ? -0.00389028839179 ? -0.0105583934799 ? 0.162301642932 ? -0.0233429278094 ? -0.072732286035 ? 0.283247739392 ? -0.0753075837118 ? -0.0849437317239 ? 2 'X-RAY DIFFRACTION' ? refined -12.0264470653 7.09546953228 15.4647369399 0.11640924381 ? 0.0112563548566 ? 0.0021848436586 ? 0.120633841563 ? 0.011402214878 ? 0.101330122409 ? 2.44537569808 ? -1.45310833013 ? -3.40934272671 ? 1.45483463714 ? 2.41593038625 ? 5.94740658367 ? -0.096683362068 ? -0.104316950197 ? 0.0523690764722 ? 0.181336329157 ? 0.116111154424 ? 0.0400433446164 ? 0.327400296668 ? 0.161500820568 ? -0.0493394504543 ? 3 'X-RAY DIFFRACTION' ? refined -9.60992680739 -10.9132365342 -14.1041091342 0.123352073707 ? -0.0244793198431 ? -0.0453041799714 ? 0.175146556608 ? -0.0329865433203 ? 0.160381072661 ? 3.70512904352 ? -1.05044819314 ? -1.53758480725 ? 5.31887996248 ? 2.90620468392 ? 7.85671449426 ? 0.341812794907 ? -0.168912921394 ? 0.12757943269 ? -0.172209950327 ? -0.400751953021 ? 0.116027224328 ? -0.0426733399925 ? -0.207011558491 ? 0.0621021277478 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A -2 ? A ? A 12 ? ? ;chain 'A' and (resid -2 through 12 ) ; 2 'X-RAY DIFFRACTION' 2 A ? A 13 ? A ? A 32 ? ? ;chain 'A' and (resid 13 through 32 ) ; 3 'X-RAY DIFFRACTION' 3 A ? A 33 ? A ? A 41 ? ? ;chain 'A' and (resid 33 through 41 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 CA CA CA N N 43 DA OP3 O N N 44 DA P P N N 45 DA OP1 O N N 46 DA OP2 O N N 47 DA "O5'" O N N 48 DA "C5'" C N N 49 DA "C4'" C N R 50 DA "O4'" O N N 51 DA "C3'" C N S 52 DA "O3'" O N N 53 DA "C2'" C N N 54 DA "C1'" C N R 55 DA N9 N Y N 56 DA C8 C Y N 57 DA N7 N Y N 58 DA C5 C Y N 59 DA C6 C Y N 60 DA N6 N N N 61 DA N1 N Y N 62 DA C2 C Y N 63 DA N3 N Y N 64 DA C4 C Y N 65 DA HOP3 H N N 66 DA HOP2 H N N 67 DA "H5'" H N N 68 DA "H5''" H N N 69 DA "H4'" H N N 70 DA "H3'" H N N 71 DA "HO3'" H N N 72 DA "H2'" H N N 73 DA "H2''" H N N 74 DA "H1'" H N N 75 DA H8 H N N 76 DA H61 H N N 77 DA H62 H N N 78 DA H2 H N N 79 DC OP3 O N N 80 DC P P N N 81 DC OP1 O N N 82 DC OP2 O N N 83 DC "O5'" O N N 84 DC "C5'" C N N 85 DC "C4'" C N R 86 DC "O4'" O N N 87 DC "C3'" C N S 88 DC "O3'" O N N 89 DC "C2'" C N N 90 DC "C1'" C N R 91 DC N1 N N N 92 DC C2 C N N 93 DC O2 O N N 94 DC N3 N N N 95 DC C4 C N N 96 DC N4 N N N 97 DC C5 C N N 98 DC C6 C N N 99 DC HOP3 H N N 100 DC HOP2 H N N 101 DC "H5'" H N N 102 DC "H5''" H N N 103 DC "H4'" H N N 104 DC "H3'" H N N 105 DC "HO3'" H N N 106 DC "H2'" H N N 107 DC "H2''" H N N 108 DC "H1'" H N N 109 DC H41 H N N 110 DC H42 H N N 111 DC H5 H N N 112 DC H6 H N N 113 DG OP3 O N N 114 DG P P N N 115 DG OP1 O N N 116 DG OP2 O N N 117 DG "O5'" O N N 118 DG "C5'" C N N 119 DG "C4'" C N R 120 DG "O4'" O N N 121 DG "C3'" C N S 122 DG "O3'" O N N 123 DG "C2'" C N N 124 DG "C1'" C N R 125 DG N9 N Y N 126 DG C8 C Y N 127 DG N7 N Y N 128 DG C5 C Y N 129 DG C6 C N N 130 DG O6 O N N 131 DG N1 N N N 132 DG C2 C N N 133 DG N2 N N N 134 DG N3 N N N 135 DG C4 C Y N 136 DG HOP3 H N N 137 DG HOP2 H N N 138 DG "H5'" H N N 139 DG "H5''" H N N 140 DG "H4'" H N N 141 DG "H3'" H N N 142 DG "HO3'" H N N 143 DG "H2'" H N N 144 DG "H2''" H N N 145 DG "H1'" H N N 146 DG H8 H N N 147 DG H1 H N N 148 DG H21 H N N 149 DG H22 H N N 150 DT OP3 O N N 151 DT P P N N 152 DT OP1 O N N 153 DT OP2 O N N 154 DT "O5'" O N N 155 DT "C5'" C N N 156 DT "C4'" C N R 157 DT "O4'" O N N 158 DT "C3'" C N S 159 DT "O3'" O N N 160 DT "C2'" C N N 161 DT "C1'" C N R 162 DT N1 N N N 163 DT C2 C N N 164 DT O2 O N N 165 DT N3 N N N 166 DT C4 C N N 167 DT O4 O N N 168 DT C5 C N N 169 DT C7 C N N 170 DT C6 C N N 171 DT HOP3 H N N 172 DT HOP2 H N N 173 DT "H5'" H N N 174 DT "H5''" H N N 175 DT "H4'" H N N 176 DT "H3'" H N N 177 DT "HO3'" H N N 178 DT "H2'" H N N 179 DT "H2''" H N N 180 DT "H1'" H N N 181 DT H3 H N N 182 DT H71 H N N 183 DT H72 H N N 184 DT H73 H N N 185 DT H6 H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 NA NA NA N N 190 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 DA OP3 P sing N N 45 DA OP3 HOP3 sing N N 46 DA P OP1 doub N N 47 DA P OP2 sing N N 48 DA P "O5'" sing N N 49 DA OP2 HOP2 sing N N 50 DA "O5'" "C5'" sing N N 51 DA "C5'" "C4'" sing N N 52 DA "C5'" "H5'" sing N N 53 DA "C5'" "H5''" sing N N 54 DA "C4'" "O4'" sing N N 55 DA "C4'" "C3'" sing N N 56 DA "C4'" "H4'" sing N N 57 DA "O4'" "C1'" sing N N 58 DA "C3'" "O3'" sing N N 59 DA "C3'" "C2'" sing N N 60 DA "C3'" "H3'" sing N N 61 DA "O3'" "HO3'" sing N N 62 DA "C2'" "C1'" sing N N 63 DA "C2'" "H2'" sing N N 64 DA "C2'" "H2''" sing N N 65 DA "C1'" N9 sing N N 66 DA "C1'" "H1'" sing N N 67 DA N9 C8 sing Y N 68 DA N9 C4 sing Y N 69 DA C8 N7 doub Y N 70 DA C8 H8 sing N N 71 DA N7 C5 sing Y N 72 DA C5 C6 sing Y N 73 DA C5 C4 doub Y N 74 DA C6 N6 sing N N 75 DA C6 N1 doub Y N 76 DA N6 H61 sing N N 77 DA N6 H62 sing N N 78 DA N1 C2 sing Y N 79 DA C2 N3 doub Y N 80 DA C2 H2 sing N N 81 DA N3 C4 sing Y N 82 DC OP3 P sing N N 83 DC OP3 HOP3 sing N N 84 DC P OP1 doub N N 85 DC P OP2 sing N N 86 DC P "O5'" sing N N 87 DC OP2 HOP2 sing N N 88 DC "O5'" "C5'" sing N N 89 DC "C5'" "C4'" sing N N 90 DC "C5'" "H5'" sing N N 91 DC "C5'" "H5''" sing N N 92 DC "C4'" "O4'" sing N N 93 DC "C4'" "C3'" sing N N 94 DC "C4'" "H4'" sing N N 95 DC "O4'" "C1'" sing N N 96 DC "C3'" "O3'" sing N N 97 DC "C3'" "C2'" sing N N 98 DC "C3'" "H3'" sing N N 99 DC "O3'" "HO3'" sing N N 100 DC "C2'" "C1'" sing N N 101 DC "C2'" "H2'" sing N N 102 DC "C2'" "H2''" sing N N 103 DC "C1'" N1 sing N N 104 DC "C1'" "H1'" sing N N 105 DC N1 C2 sing N N 106 DC N1 C6 sing N N 107 DC C2 O2 doub N N 108 DC C2 N3 sing N N 109 DC N3 C4 doub N N 110 DC C4 N4 sing N N 111 DC C4 C5 sing N N 112 DC N4 H41 sing N N 113 DC N4 H42 sing N N 114 DC C5 C6 doub N N 115 DC C5 H5 sing N N 116 DC C6 H6 sing N N 117 DG OP3 P sing N N 118 DG OP3 HOP3 sing N N 119 DG P OP1 doub N N 120 DG P OP2 sing N N 121 DG P "O5'" sing N N 122 DG OP2 HOP2 sing N N 123 DG "O5'" "C5'" sing N N 124 DG "C5'" "C4'" sing N N 125 DG "C5'" "H5'" sing N N 126 DG "C5'" "H5''" sing N N 127 DG "C4'" "O4'" sing N N 128 DG "C4'" "C3'" sing N N 129 DG "C4'" "H4'" sing N N 130 DG "O4'" "C1'" sing N N 131 DG "C3'" "O3'" sing N N 132 DG "C3'" "C2'" sing N N 133 DG "C3'" "H3'" sing N N 134 DG "O3'" "HO3'" sing N N 135 DG "C2'" "C1'" sing N N 136 DG "C2'" "H2'" sing N N 137 DG "C2'" "H2''" sing N N 138 DG "C1'" N9 sing N N 139 DG "C1'" "H1'" sing N N 140 DG N9 C8 sing Y N 141 DG N9 C4 sing Y N 142 DG C8 N7 doub Y N 143 DG C8 H8 sing N N 144 DG N7 C5 sing Y N 145 DG C5 C6 sing N N 146 DG C5 C4 doub Y N 147 DG C6 O6 doub N N 148 DG C6 N1 sing N N 149 DG N1 C2 sing N N 150 DG N1 H1 sing N N 151 DG C2 N2 sing N N 152 DG C2 N3 doub N N 153 DG N2 H21 sing N N 154 DG N2 H22 sing N N 155 DG N3 C4 sing N N 156 DT OP3 P sing N N 157 DT OP3 HOP3 sing N N 158 DT P OP1 doub N N 159 DT P OP2 sing N N 160 DT P "O5'" sing N N 161 DT OP2 HOP2 sing N N 162 DT "O5'" "C5'" sing N N 163 DT "C5'" "C4'" sing N N 164 DT "C5'" "H5'" sing N N 165 DT "C5'" "H5''" sing N N 166 DT "C4'" "O4'" sing N N 167 DT "C4'" "C3'" sing N N 168 DT "C4'" "H4'" sing N N 169 DT "O4'" "C1'" sing N N 170 DT "C3'" "O3'" sing N N 171 DT "C3'" "C2'" sing N N 172 DT "C3'" "H3'" sing N N 173 DT "O3'" "HO3'" sing N N 174 DT "C2'" "C1'" sing N N 175 DT "C2'" "H2'" sing N N 176 DT "C2'" "H2''" sing N N 177 DT "C1'" N1 sing N N 178 DT "C1'" "H1'" sing N N 179 DT N1 C2 sing N N 180 DT N1 C6 sing N N 181 DT C2 O2 doub N N 182 DT C2 N3 sing N N 183 DT N3 C4 sing N N 184 DT N3 H3 sing N N 185 DT C4 O4 doub N N 186 DT C4 C5 sing N N 187 DT C5 C7 sing N N 188 DT C5 C6 doub N N 189 DT C7 H71 sing N N 190 DT C7 H72 sing N N 191 DT C7 H73 sing N N 192 DT C6 H6 sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9URW 'double helix' 9URW 'b-form double helix' 9URW 'hairpin loop' 9URW 'bulge loop' 9URW 'mismatched base pair' 9URW 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DC 43 1_555 -0.215 -0.179 0.005 -1.066 -10.772 -0.783 1 A_DG-1:DC40_A A -1 ? A 40 ? 19 1 1 A DT 3 1_555 A DA 42 1_555 -0.095 -0.087 -0.224 7.236 -6.927 -0.618 2 A_DT0:DA39_A A 0 ? A 39 ? 20 1 1 A DA 4 1_555 A DT 41 1_555 0.140 -0.142 0.051 0.661 -8.703 2.820 3 A_DA1:DT38_A A 1 ? A 38 ? 20 1 1 A DC 5 1_555 A DG 40 1_555 0.182 -0.128 -0.114 3.404 -10.815 -1.064 4 A_DC2:DG37_A A 2 ? A 37 ? 19 1 1 A DG 6 1_555 A DC 39 1_555 0.019 -0.110 0.090 0.726 -6.914 0.917 5 A_DG3:DC36_A A 3 ? A 36 ? 19 1 1 A DA 7 1_555 A DT 38 1_555 0.011 -0.100 0.086 2.428 -0.825 0.270 6 A_DA4:DT35_A A 4 ? A 35 ? 20 1 1 A DC 8 1_555 A DG 37 1_555 0.192 -0.138 -0.259 15.147 1.695 0.586 7 A_DC5:DG34_A A 5 ? A 34 ? 19 1 1 A DA 9 1_555 A DT 36 1_555 0.103 -0.057 -0.076 20.546 -18.538 -0.089 8 A_DA6:DT33_A A 6 ? A 33 ? 20 1 1 A DG 11 1_555 A DG 32 1_555 5.781 -0.533 -0.098 37.264 -13.016 -103.127 9 A_DG8:DG29_A A 8 ? A 29 ? 7 4 1 A DA 13 1_555 A DT 33 1_555 0.110 0.001 -0.190 21.774 29.327 1.848 10 A_DA10:DT30_A A 10 ? A 30 ? 20 1 1 A DG 14 1_555 A DT 30 1_555 -2.187 -0.586 -0.211 5.756 0.817 -6.176 11 A_DG11:DT27_A A 11 ? A 27 ? 28 1 1 A DG 15 1_555 A DA 29 1_555 -0.183 1.569 -0.204 12.292 -15.412 -21.778 12 A_DG12:DA26_A A 12 ? A 26 ? 8 1 1 A DT 17 1_555 A DA 28 1_555 -0.191 -0.154 0.293 -14.894 -17.506 1.177 13 A_DT14:DA25_A A 14 ? A 25 ? 20 1 1 A DT 18 1_555 A DA 27 1_555 -0.028 -0.113 0.011 -14.553 -21.135 1.303 14 A_DT15:DA24_A A 15 ? A 24 ? 20 1 1 A DA 19 1_555 A DT 26 1_555 0.026 -0.200 -0.308 -9.137 2.205 -1.312 15 A_DA16:DT23_A A 16 ? A 23 ? 20 1 1 A DG 20 1_555 A DC 25 1_555 -0.017 -0.247 0.044 4.633 -1.055 -2.123 16 A_DG17:DC22_A A 17 ? A 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DC 43 1_555 A DT 3 1_555 A DA 42 1_555 -0.089 -0.624 3.158 3.189 9.429 29.517 -2.852 0.736 2.805 17.878 -6.046 31.115 1 AA_DG-1DT0:DA39DC40_AA A -1 ? A 40 ? A 0 ? A 39 ? 1 A DT 3 1_555 A DA 42 1_555 A DA 4 1_555 A DT 41 1_555 0.592 -1.043 3.384 0.023 7.817 33.743 -2.958 -0.991 3.074 13.246 -0.040 34.611 2 AA_DT0DA1:DT38DA39_AA A 0 ? A 39 ? A 1 ? A 38 ? 1 A DA 4 1_555 A DT 41 1_555 A DC 5 1_555 A DG 40 1_555 -0.387 -0.443 3.247 1.151 1.292 30.930 -1.076 0.944 3.210 2.420 -2.156 30.978 3 AA_DA1DC2:DG37DT38_AA A 1 ? A 38 ? A 2 ? A 37 ? 1 A DC 5 1_555 A DG 40 1_555 A DG 6 1_555 A DC 39 1_555 -0.229 0.557 3.419 -0.961 6.295 36.750 -0.012 0.223 3.469 9.892 1.511 37.279 4 AA_DC2DG3:DC36DG37_AA A 2 ? A 37 ? A 3 ? A 36 ? 1 A DG 6 1_555 A DC 39 1_555 A DA 7 1_555 A DT 38 1_555 0.154 0.370 3.248 -0.722 0.134 38.405 0.545 -0.324 3.245 0.204 1.098 38.412 5 AA_DG3DA4:DT35DC36_AA A 3 ? A 36 ? A 4 ? A 35 ? 1 A DA 7 1_555 A DT 38 1_555 A DC 8 1_555 A DG 37 1_555 0.652 -0.120 3.077 3.381 3.282 26.434 -1.062 -0.575 3.097 7.104 -7.320 26.843 6 AA_DA4DC5:DG34DT35_AA A 4 ? A 35 ? A 5 ? A 34 ? 1 A DC 8 1_555 A DG 37 1_555 A DA 9 1_555 A DT 36 1_555 -0.395 1.160 3.255 1.496 4.163 40.876 1.196 0.726 3.337 5.940 -2.134 41.104 7 AA_DC5DA6:DT33DG34_AA A 5 ? A 34 ? A 6 ? A 33 ? 1 A DA 9 1_555 A DT 36 1_555 A DG 11 1_555 A DG 32 1_555 1.414 5.289 2.985 16.741 -10.828 80.015 4.264 -0.714 2.583 -8.304 -12.839 82.054 8 AA_DA6DG8:DG29DT33_AA A 6 ? A 33 ? A 8 ? A 29 ? 1 A DA 13 1_555 A DT 33 1_555 A DG 14 1_555 A DT 30 1_555 3.886 1.890 3.177 24.847 14.014 51.368 0.970 -2.270 4.794 14.931 -26.474 58.284 9 AA_DA10DG11:DT27DT30_AA A 10 ? A 30 ? A 11 ? A 27 ? 1 A DG 14 1_555 A DT 30 1_555 A DG 15 1_555 A DA 29 1_555 -1.835 0.561 3.251 -1.629 2.076 40.820 0.573 2.445 3.342 2.972 2.332 40.901 10 AA_DG11DG12:DA26DT27_AA A 11 ? A 27 ? A 12 ? A 26 ? 1 A DG 15 1_555 A DA 29 1_555 A DT 17 1_555 A DA 28 1_555 -0.465 0.162 3.651 -4.911 -6.331 58.804 0.524 0.190 3.642 -6.415 4.976 59.299 11 AA_DG12DT14:DA25DA26_AA A 12 ? A 26 ? A 14 ? A 25 ? 1 A DT 17 1_555 A DA 28 1_555 A DT 18 1_555 A DA 27 1_555 -0.699 0.098 3.218 0.468 -0.538 33.291 0.258 1.296 3.206 -0.939 -0.817 33.299 12 AA_DT14DT15:DA24DA25_AA A 14 ? A 25 ? A 15 ? A 24 ? 1 A DT 18 1_555 A DA 27 1_555 A DA 19 1_555 A DT 26 1_555 0.672 1.704 3.234 0.612 -3.302 41.371 2.746 -0.885 3.104 -4.664 -0.864 41.501 13 AA_DT15DA16:DT23DA24_AA A 15 ? A 24 ? A 16 ? A 23 ? 1 A DA 19 1_555 A DT 26 1_555 A DG 20 1_555 A DC 25 1_555 0.476 -0.440 3.098 -4.205 -0.013 26.923 -0.930 -1.995 2.990 -0.027 8.963 27.243 14 AA_DA16DG17:DC22DT23_AA A 16 ? A 23 ? A 17 ? A 22 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'Ba SAD' # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 9URW _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.012234 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000958 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035923 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019412 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #