HEADER DNA 30-APR-25 9URW TITLE CRYSTAL STRUCTURE OF ADE1304 DNA APTAMER (1304B9) BOUND TO ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (44-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS ADENOSINE/ATP DNA APTAMER, ADP, DNA EXPDTA X-RAY DIFFRACTION AUTHOR X.CHEN,Y.LUO,Y.REN,L.HUANG REVDAT 1 11-NOV-26 9URW 0 JRNL AUTH X.CHEN,Y.LUO,Y.REN,L.HUANG JRNL TITL CRYSTAL STRUCTURE OF ADENOSINE AND ATP-BINDING DNA APTAMER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 17019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2400 - 2.7600 0.95 2826 155 0.1517 0.1655 REMARK 3 2 2.7600 - 2.1900 0.94 2756 119 0.2042 0.2353 REMARK 3 3 2.1900 - 1.9200 0.90 2571 152 0.1941 0.2604 REMARK 3 4 1.9200 - 1.7400 0.92 2619 119 0.1937 0.2303 REMARK 3 5 1.7400 - 1.6200 0.95 2706 133 0.2079 0.2606 REMARK 3 6 1.6200 - 1.5200 0.95 2732 131 0.2432 0.2857 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.172 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1043 REMARK 3 ANGLE : 2.050 1610 REMARK 3 CHIRALITY : 0.087 179 REMARK 3 PLANARITY : 0.022 45 REMARK 3 DIHEDRAL : 34.288 491 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2340 -4.4883 -6.3241 REMARK 3 T TENSOR REMARK 3 T11: 0.1244 T22: 0.1008 REMARK 3 T33: 0.1046 T12: -0.0126 REMARK 3 T13: 0.0173 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.5355 L22: 1.6726 REMARK 3 L33: 4.3690 L12: 0.7923 REMARK 3 L13: 1.4254 L23: 2.6341 REMARK 3 S TENSOR REMARK 3 S11: 0.1212 S12: -0.0039 S13: -0.0106 REMARK 3 S21: 0.1623 S22: -0.0233 S23: -0.0727 REMARK 3 S31: 0.2832 S32: -0.0753 S33: -0.0849 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0264 7.0955 15.4647 REMARK 3 T TENSOR REMARK 3 T11: 0.1164 T22: 0.1206 REMARK 3 T33: 0.1013 T12: 0.0113 REMARK 3 T13: 0.0022 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.4454 L22: 1.4548 REMARK 3 L33: 5.9474 L12: -1.4531 REMARK 3 L13: -3.4093 L23: 2.4159 REMARK 3 S TENSOR REMARK 3 S11: -0.0967 S12: -0.1043 S13: 0.0524 REMARK 3 S21: 0.1813 S22: 0.1161 S23: 0.0400 REMARK 3 S31: 0.3274 S32: 0.1615 S33: -0.0493 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6099 -10.9132 -14.1041 REMARK 3 T TENSOR REMARK 3 T11: 0.1234 T22: 0.1751 REMARK 3 T33: 0.1604 T12: -0.0245 REMARK 3 T13: -0.0453 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 3.7051 L22: 5.3189 REMARK 3 L33: 7.8567 L12: -1.0504 REMARK 3 L13: -1.5376 L23: 2.9062 REMARK 3 S TENSOR REMARK 3 S11: 0.3418 S12: -0.1689 S13: 0.1276 REMARK 3 S21: -0.1722 S22: -0.4008 S23: 0.1160 REMARK 3 S31: -0.0427 S32: -0.2070 S33: 0.0621 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9URW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 05-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300058519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 33.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.01300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE DIHYDRATE, 0.05 REMARK 280 M HEPES PH7.5, 29% V/V POLYETHYLENE GLYCOL 400, 0.002 M SPERMINE REMARK 280 TETRAHYDROCHLORIDE, 0.01 M BARIUM CHLORIDE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.87050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 13.91850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.87050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 13.91850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 110 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 313 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 368 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H3 DT A 19 O HOH A 204 1.43 REMARK 500 O HOH A 203 O HOH A 210 1.54 REMARK 500 O HOH A 237 O HOH A 302 1.56 REMARK 500 OP2 DT A 35 O HOH A 201 1.70 REMARK 500 O HOH A 377 O HOH A 395 1.87 REMARK 500 OP1 DT A 35 O HOH A 202 1.87 REMARK 500 O HOH A 308 O HOH A 338 1.88 REMARK 500 O1A ADP A 101 O HOH A 203 1.88 REMARK 500 O HOH A 212 O HOH A 221 1.90 REMARK 500 O HOH A 382 O HOH A 396 1.91 REMARK 500 O HOH A 221 O HOH A 239 1.92 REMARK 500 O HOH A 232 O HOH A 279 1.96 REMARK 500 O4 DT A 19 O HOH A 204 1.98 REMARK 500 OP1 DC A 22 O HOH A 205 1.99 REMARK 500 O HOH A 220 O HOH A 373 2.00 REMARK 500 O HOH A 260 O HOH A 381 2.00 REMARK 500 N3 DT A 19 O HOH A 204 2.03 REMARK 500 OP1 DT A 14 O HOH A 206 2.04 REMARK 500 O HOH A 209 O HOH A 288 2.07 REMARK 500 OP1 DT A 23 O HOH A 207 2.07 REMARK 500 O3B ADP A 101 O HOH A 208 2.08 REMARK 500 O HOH A 212 O HOH A 386 2.08 REMARK 500 O HOH A 203 O HOH A 243 2.10 REMARK 500 O HOH A 242 O HOH A 380 2.11 REMARK 500 O HOH A 266 O HOH A 390 2.17 REMARK 500 O HOH A 388 O HOH A 392 2.17 REMARK 500 O HOH A 273 O HOH A 379 2.19 REMARK 500 O HOH A 354 O HOH A 388 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 375 O HOH A 393 1544 1.54 REMARK 500 O HOH A 251 O HOH A 270 4445 1.87 REMARK 500 O HOH A 255 O HOH A 331 1565 1.88 REMARK 500 O HOH A 379 O HOH A 386 4446 1.93 REMARK 500 O HOH A 218 O HOH A 303 4445 2.01 REMARK 500 O HOH A 264 O HOH A 310 2565 2.02 REMARK 500 O HOH A 251 O HOH A 386 1544 2.03 REMARK 500 O HOH A 226 O HOH A 351 2555 2.06 REMARK 500 O HOH A 251 O HOH A 307 4445 2.08 REMARK 500 OP1 DG A -1 O HOH A 205 4445 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 7 O3' DC A 7 C3' -0.070 REMARK 500 DG A 8 O5' DG A 8 C5' -0.157 REMARK 500 DG A 17 O3' DG A 17 C3' -0.036 REMARK 500 DA A 24 O3' DA A 24 C3' -0.050 REMARK 500 DA A 26 O3' DA A 26 C3' -0.040 REMARK 500 DT A 35 O3' DT A 35 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 1 O5' - P - OP2 ANGL. DEV. = -8.2 DEGREES REMARK 500 DA A 1 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DG A 8 OP1 - P - OP2 ANGL. DEV. = 11.6 DEGREES REMARK 500 DG A 9 OP1 - P - OP2 ANGL. DEV. = 12.1 DEGREES REMARK 500 DG A 9 O5' - P - OP2 ANGL. DEV. = -8.5 DEGREES REMARK 500 DC A 13 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT A 15 O4' - C1' - N1 ANGL. DEV. = -5.1 DEGREES REMARK 500 DA A 25 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG A 28 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT A 30 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC A 31 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC A 40 O5' - P - OP2 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A -1 OP1 REMARK 620 2 DT A 19 OP2 82.0 REMARK 620 3 DT A 20 OP2 79.5 2.5 REMARK 620 4 DC A 22 OP1 68.7 14.1 12.0 REMARK 620 5 HOH A 205 O 68.9 14.3 12.3 0.9 REMARK 620 6 HOH A 336 O 66.5 15.9 13.7 2.4 3.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A -1 OP2 REMARK 620 2 DT A 20 OP1 56.8 REMARK 620 3 DC A 22 OP2 45.6 11.5 REMARK 620 4 HOH A 258 O 41.3 15.6 4.8 REMARK 620 5 HOH A 327 O 43.6 13.2 2.3 2.5 REMARK 620 6 HOH A 359 O 44.5 12.5 3.4 3.4 2.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 6 OP2 REMARK 620 2 DC A 7 O2 83.0 REMARK 620 3 DG A 29 OP1 74.9 68.5 REMARK 620 4 HOH A 271 O 97.7 150.6 83.3 REMARK 620 5 HOH A 294 O 87.6 130.7 152.8 78.5 REMARK 620 6 HOH A 322 O 93.0 73.5 18.4 77.1 155.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 108 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 13 OP2 REMARK 620 2 DG A 21 O6 132.9 REMARK 620 3 HOH A 255 O 92.0 134.9 REMARK 620 4 HOH A 257 O 94.1 44.4 159.7 REMARK 620 5 HOH A 331 O 72.2 144.1 39.9 124.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 112 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 27 O2 REMARK 620 2 DT A 30 O4 85.6 REMARK 620 3 HOH A 366 O 134.9 120.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 28 OP2 REMARK 620 2 HOH A 318 O 45.1 REMARK 620 3 HOH A 321 O 44.7 5.5 REMARK 620 4 HOH A 349 O 45.1 1.6 7.1 REMARK 620 5 HOH A 360 O 51.6 6.5 9.4 6.5 REMARK 620 6 HOH A 367 O 49.7 7.5 12.6 6.3 5.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 39 OP1 REMARK 620 2 HOH A 356 O 63.3 REMARK 620 3 HOH A 365 O 65.1 4.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 111 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 101 O2A REMARK 620 2 HOH A 216 O 73.7 REMARK 620 3 HOH A 297 O 91.4 152.7 REMARK 620 4 HOH A 384 O 142.9 94.9 83.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 295 O REMARK 620 2 HOH A 336 O 91.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 110 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 232 O REMARK 620 2 HOH A 232 O 98.4 REMARK 620 3 HOH A 279 O 52.5 134.8 REMARK 620 4 HOH A 279 O 134.8 52.5 171.5 REMARK 620 5 HOH A 313 O 130.8 130.8 85.7 85.7 REMARK 620 6 HOH A 313 O 130.8 130.8 85.7 85.7 0.0 REMARK 620 7 HOH A 368 O 49.2 49.2 94.3 94.3 180.0 180.0 REMARK 620 8 HOH A 368 O 49.2 49.2 94.3 94.3 180.0 180.0 0.0 REMARK 620 N 1 2 3 4 5 6 7 DBREF 9URW A -2 41 PDB 9URW 9URW -2 41 SEQRES 1 A 44 DT DG DT DA DC DG DA DC DA DC DG DG DA SEQRES 2 A 44 DG DG DC DT DT DA DG DT DT DT DG DC DT SEQRES 3 A 44 DA DA DA DT DG DG DT DC DA DT DG DT DC SEQRES 4 A 44 DG DT DA DC DA HET ADP A 101 39 HET CA A 102 1 HET CA A 103 1 HET CA A 104 1 HET CA A 105 1 HET NA A 106 1 HET NA A 107 1 HET NA A 108 1 HET NA A 109 1 HET NA A 110 1 HET NA A 111 1 HET NA A 112 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 CA 4(CA 2+) FORMUL 7 NA 7(NA 1+) FORMUL 14 HOH *198(H2 O) LINK OP1 DG A -1 CA CA A 102 1555 4445 2.36 LINK OP2 DG A -1 CA CA A 103 1555 4445 2.27 LINK OP2 DA A 6 CA CA A 104 1555 1555 2.34 LINK O2 DC A 7 CA CA A 104 1555 1555 2.54 LINK OP2 DC A 13 NA NA A 108 1555 1555 2.12 LINK OP2 DT A 19 CA CA A 102 1555 4456 2.37 LINK OP2 DT A 20 CA CA A 102 1555 4456 2.30 LINK OP1 DT A 20 CA CA A 103 1555 4456 2.32 LINK O6 DG A 21 NA NA A 108 1555 4456 2.25 LINK OP1 DC A 22 CA CA A 102 1555 1555 2.39 LINK OP2 DC A 22 CA CA A 103 1555 1555 2.29 LINK O2 DT A 27 NA NA A 112 1555 1555 2.84 LINK OP2 DG A 28 NA NA A 106 1555 2555 2.28 LINK OP1 DG A 29 CA CA A 104 1555 2555 2.26 LINK O4 DT A 30 NA NA A 112 1555 1555 2.81 LINK OP1 DA A 39 NA NA A 107 1555 2545 2.32 LINK O2A ADP A 101 NA NA A 111 1555 1555 2.34 LINK CA CA A 102 O HOH A 205 1555 1555 2.35 LINK CA CA A 102 O HOH A 336 1555 4455 2.47 LINK CA CA A 103 O HOH A 258 1555 4446 2.34 LINK CA CA A 103 O HOH A 327 1555 4446 2.51 LINK CA CA A 103 O HOH A 359 1555 1555 2.37 LINK CA CA A 104 O HOH A 271 1555 2555 2.44 LINK CA CA A 104 O HOH A 294 1555 1555 2.49 LINK CA CA A 104 O HOH A 322 1555 1555 2.37 LINK CA CA A 105 O HOH A 295 1555 1566 2.78 LINK CA CA A 105 O HOH A 336 1555 1566 3.14 LINK NA NA A 106 O HOH A 318 1555 1565 2.14 LINK NA NA A 106 O HOH A 321 1555 1555 2.59 LINK NA NA A 106 O HOH A 349 1555 1555 2.35 LINK NA NA A 106 O HOH A 360 1555 2555 2.11 LINK NA NA A 106 O HOH A 367 1555 2555 2.58 LINK NA NA A 107 O HOH A 356 1555 1555 2.25 LINK NA NA A 107 O HOH A 365 1555 2565 2.25 LINK NA NA A 108 O HOH A 255 1555 1545 1.92 LINK NA NA A 108 O HOH A 257 1555 4455 2.18 LINK NA NA A 108 O HOH A 331 1555 1555 2.89 LINK NA NA A 110 O HOH A 232 1555 1555 2.24 LINK NA NA A 110 O HOH A 232 1555 2555 2.24 LINK NA NA A 110 O HOH A 279 1555 1555 2.18 LINK NA NA A 110 O HOH A 279 1555 2555 2.18 LINK NA NA A 110 O HOH A 313 1555 1555 2.11 LINK NA NA A 110 O HOH A 313 1555 2555 2.11 LINK NA NA A 110 O HOH A 368 1555 1555 2.07 LINK NA NA A 110 O HOH A 368 1555 2555 2.07 LINK NA NA A 111 O HOH A 216 1555 1555 2.29 LINK NA NA A 111 O HOH A 297 1555 1555 2.17 LINK NA NA A 111 O HOH A 384 1555 1555 2.20 LINK NA NA A 112 O HOH A 366 1555 1555 2.94 CRYST1 81.741 27.837 51.671 90.00 94.48 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012234 0.000000 0.000958 0.00000 SCALE2 0.000000 0.035923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019412 0.00000 CONECT 255 1446 CONECT 298 1446 CONECT 481 1450 CONECT 768 1444 CONECT 769 1445 CONECT 938 1454 CONECT 1039 1454 CONECT 1405 1406 1407 1408 1412 CONECT 1406 1405 CONECT 1407 1405 CONECT 1408 1405 CONECT 1409 1410 1411 1412 1413 CONECT 1410 1409 CONECT 1411 1409 1453 CONECT 1412 1405 1409 CONECT 1413 1409 1414 CONECT 1414 1413 1415 1432 1433 CONECT 1415 1414 1416 1417 1434 CONECT 1416 1415 1421 CONECT 1417 1415 1418 1419 1435 CONECT 1418 1417 1436 CONECT 1419 1417 1420 1421 1437 CONECT 1420 1419 1438 CONECT 1421 1416 1419 1422 1439 CONECT 1422 1421 1423 1431 CONECT 1423 1422 1424 1440 CONECT 1424 1423 1425 CONECT 1425 1424 1426 1431 CONECT 1426 1425 1427 1428 CONECT 1427 1426 1441 1442 CONECT 1428 1426 1429 CONECT 1429 1428 1430 1443 CONECT 1430 1429 1431 CONECT 1431 1422 1425 1430 CONECT 1432 1414 CONECT 1433 1414 CONECT 1434 1415 CONECT 1435 1417 CONECT 1436 1418 CONECT 1437 1419 CONECT 1438 1420 CONECT 1439 1421 CONECT 1440 1423 CONECT 1441 1427 CONECT 1442 1427 CONECT 1443 1429 CONECT 1444 768 1459 CONECT 1445 769 1613 CONECT 1446 255 298 1548 1576 CONECT 1448 1575 1603 CONECT 1449 1610 CONECT 1450 481 1585 CONECT 1452 1486 1533 1567 1622 CONECT 1453 1411 1470 1551 1638 CONECT 1454 938 1039 1620 CONECT 1459 1444 CONECT 1470 1453 CONECT 1486 1452 CONECT 1533 1452 CONECT 1548 1446 CONECT 1551 1453 CONECT 1567 1452 CONECT 1575 1448 CONECT 1576 1446 CONECT 1585 1450 CONECT 1603 1448 CONECT 1610 1449 CONECT 1613 1445 CONECT 1620 1454 CONECT 1622 1452 CONECT 1638 1453 MASTER 479 0 12 0 0 0 0 6 1140 1 71 4 END