data_9URY # _entry.id 9URY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9URY pdb_00009ury 10.2210/pdb9ury/pdb WWPDB D_1300058551 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-11-11 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9URY _pdbx_database_status.recvd_initial_deposition_date 2025-04-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 5 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, X.' 1 0000-0002-4502-0633 'Luo, Y.' 2 0009-0006-3449-7088 'Ren, Y.' 3 0009-0006-0959-2008 'Huang, L.' 4 0000-0002-2121-365X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of adenosine and ATP-binding DNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, X.' 1 0000-0002-4502-0633 primary 'Luo, Y.' 2 0009-0006-3449-7088 primary 'Ren, Y.' 3 0009-0006-0959-2008 primary 'Huang, L.' 4 0000-0002-2121-365X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (38-MER)' 11765.560 2 ? ? ? ? 2 non-polymer syn ADENOSINE 267.241 2 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 5 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 5 ? ? ? ? 5 water nat water 18.015 46 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DC)(DG)(DA)(DC)(DA)(DC)(DG)(DG)(DA)(DG)(DG)(DC)(DT)(DT)(DA)(DG)(DT)(DT)(DT) (DG)(DC)(DT)(DA)(DA)(DA)(DT)(DG)(DG)(DT)(DC)(DA)(DT)(DG)(DT)(DC)(DG)(DT) ; _entity_poly.pdbx_seq_one_letter_code_can ACGACACGGAGGCTTAGTTTGCTAAATGGTCATGTCGT _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENOSINE ADN 3 'CALCIUM ION' CA 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 DA n 1 7 DC n 1 8 DG n 1 9 DG n 1 10 DA n 1 11 DG n 1 12 DG n 1 13 DC n 1 14 DT n 1 15 DT n 1 16 DA n 1 17 DG n 1 18 DT n 1 19 DT n 1 20 DT n 1 21 DG n 1 22 DC n 1 23 DT n 1 24 DA n 1 25 DA n 1 26 DA n 1 27 DT n 1 28 DG n 1 29 DG n 1 30 DT n 1 31 DC n 1 32 DA n 1 33 DT n 1 34 DG n 1 35 DT n 1 36 DC n 1 37 DG n 1 38 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 38 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADN non-polymer . ADENOSINE ? 'C10 H13 N5 O4' 267.241 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA B . n A 1 2 DC 2 2 2 DC DC B . n A 1 3 DG 3 3 3 DG DG B . n A 1 4 DA 4 4 4 DA DA B . n A 1 5 DC 5 5 5 DC DC B . n A 1 6 DA 6 6 6 DA DA B . n A 1 7 DC 7 7 7 DC DC B . n A 1 8 DG 8 8 8 DG DG B . n A 1 9 DG 9 9 9 DG DG B . n A 1 10 DA 10 10 10 DA DA B . n A 1 11 DG 11 11 11 DG DG B . n A 1 12 DG 12 12 12 DG DG B . n A 1 13 DC 13 13 13 DC DC B . n A 1 14 DT 14 14 14 DT DT B . n A 1 15 DT 15 15 15 DT DT B . n A 1 16 DA 16 16 16 DA DA B . n A 1 17 DG 17 17 17 DG DG B . n A 1 18 DT 18 18 18 DT DT B . n A 1 19 DT 19 19 19 DT DT B . n A 1 20 DT 20 20 20 DT DT B . n A 1 21 DG 21 21 21 DG DG B . n A 1 22 DC 22 22 22 DC DC B . n A 1 23 DT 23 23 23 DT DT B . n A 1 24 DA 24 24 24 DA DA B . n A 1 25 DA 25 25 25 DA DA B . n A 1 26 DA 26 26 26 DA DA B . n A 1 27 DT 27 27 27 DT DT B . n A 1 28 DG 28 28 28 DG DG B . n A 1 29 DG 29 29 29 DG DG B . n A 1 30 DT 30 30 30 DT DT B . n A 1 31 DC 31 31 31 DC DC B . n A 1 32 DA 32 32 32 DA DA B . n A 1 33 DT 33 33 33 DT DT B . n A 1 34 DG 34 34 34 DG DG B . n A 1 35 DT 35 35 35 DT DT B . n A 1 36 DC 36 36 36 DC DC B . n A 1 37 DG 37 37 37 DG DG B . n A 1 38 DT 38 38 38 DT DT B . n B 1 1 DA 1 1 1 DA DA A . n B 1 2 DC 2 2 2 DC DC A . n B 1 3 DG 3 3 3 DG DG A . n B 1 4 DA 4 4 4 DA DA A . n B 1 5 DC 5 5 5 DC DC A . n B 1 6 DA 6 6 6 DA DA A . n B 1 7 DC 7 7 7 DC DC A . n B 1 8 DG 8 8 8 DG DG A . n B 1 9 DG 9 9 9 DG DG A . n B 1 10 DA 10 10 10 DA DA A . n B 1 11 DG 11 11 11 DG DG A . n B 1 12 DG 12 12 12 DG DG A . n B 1 13 DC 13 13 13 DC DC A . n B 1 14 DT 14 14 14 DT DT A . n B 1 15 DT 15 15 15 DT DT A . n B 1 16 DA 16 16 16 DA DA A . n B 1 17 DG 17 17 17 DG DG A . n B 1 18 DT 18 18 18 DT DT A . n B 1 19 DT 19 19 19 DT DT A . n B 1 20 DT 20 20 20 DT DT A . n B 1 21 DG 21 21 21 DG DG A . n B 1 22 DC 22 22 22 DC DC A . n B 1 23 DT 23 23 23 DT DT A . n B 1 24 DA 24 24 24 DA DA A . n B 1 25 DA 25 25 25 DA DA A . n B 1 26 DA 26 26 26 DA DA A . n B 1 27 DT 27 27 27 DT DT A . n B 1 28 DG 28 28 28 DG DG A . n B 1 29 DG 29 29 29 DG DG A . n B 1 30 DT 30 30 30 DT DT A . n B 1 31 DC 31 31 31 DC DC A . n B 1 32 DA 32 32 32 DA DA A . n B 1 33 DT 33 33 33 DT DT A . n B 1 34 DG 34 34 34 DG DG A . n B 1 35 DT 35 35 35 DT DT A . n B 1 36 DC 36 36 36 DC DC A . n B 1 37 DG 37 37 37 DG DG A . n B 1 38 DT 38 38 38 DT DT A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 ADN ? ? ADN ? ? 'SUBJECT OF INVESTIGATION' ? 2 CA ? ? CA ? ? 'SUBJECT OF INVESTIGATION' ? 3 NA ? ? NA ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADN 1 101 101 ADN ADN B . D 3 CA 1 102 2 CA CA B . E 3 CA 1 103 3 CA CA B . F 3 CA 1 104 5 CA CA B . G 3 CA 1 105 6 CA CA B . H 4 NA 1 106 2 NA NA B . I 4 NA 1 107 3 NA NA B . J 4 NA 1 108 4 NA NA B . K 4 NA 1 109 5 NA NA B . L 2 ADN 1 101 101 ADN ADN A . M 3 CA 1 102 1 CA CA A . N 4 NA 1 103 1 NA NA A . O 5 HOH 1 201 187 HOH HOH B . O 5 HOH 2 202 10 HOH HOH B . O 5 HOH 3 203 192 HOH HOH B . O 5 HOH 4 204 77 HOH HOH B . O 5 HOH 5 205 4 HOH HOH B . O 5 HOH 6 206 131 HOH HOH B . O 5 HOH 7 207 23 HOH HOH B . O 5 HOH 8 208 458 HOH HOH B . O 5 HOH 9 209 521 HOH HOH B . O 5 HOH 10 210 194 HOH HOH B . O 5 HOH 11 211 3 HOH HOH B . O 5 HOH 12 212 11 HOH HOH B . O 5 HOH 13 213 193 HOH HOH B . O 5 HOH 14 214 318 HOH HOH B . O 5 HOH 15 215 52 HOH HOH B . O 5 HOH 16 216 27 HOH HOH B . O 5 HOH 17 217 191 HOH HOH B . O 5 HOH 18 218 136 HOH HOH B . O 5 HOH 19 219 292 HOH HOH B . O 5 HOH 20 220 83 HOH HOH B . O 5 HOH 21 221 189 HOH HOH B . O 5 HOH 22 222 2 HOH HOH B . O 5 HOH 23 223 427 HOH HOH B . O 5 HOH 24 224 7 HOH HOH B . O 5 HOH 25 225 40 HOH HOH B . O 5 HOH 26 226 534 HOH HOH B . O 5 HOH 27 227 418 HOH HOH B . O 5 HOH 28 228 550 HOH HOH B . O 5 HOH 29 229 20 HOH HOH B . O 5 HOH 30 230 44 HOH HOH B . P 5 HOH 1 201 115 HOH HOH A . P 5 HOH 2 202 62 HOH HOH A . P 5 HOH 3 203 81 HOH HOH A . P 5 HOH 4 204 324 HOH HOH A . P 5 HOH 5 205 41 HOH HOH A . P 5 HOH 6 206 9 HOH HOH A . P 5 HOH 7 207 54 HOH HOH A . P 5 HOH 8 208 21 HOH HOH A . P 5 HOH 9 209 389 HOH HOH A . P 5 HOH 10 210 474 HOH HOH A . P 5 HOH 11 211 14 HOH HOH A . P 5 HOH 12 212 417 HOH HOH A . P 5 HOH 13 213 110 HOH HOH A . P 5 HOH 14 214 518 HOH HOH A . P 5 HOH 15 215 74 HOH HOH A . P 5 HOH 16 216 32 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.1_5286 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9URY _cell.details ? _cell.formula_units_Z ? _cell.length_a 177.811 _cell.length_a_esd ? _cell.length_b 24.009 _cell.length_b_esd ? _cell.length_c 49.934 _cell.length_c_esd ? _cell.volume 213171.457 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9URY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9URY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Calcium chloride dihydrate, 0.05 M HEPES sodium pH 7.5, 28% v/v Polyethylene glycol 400, 0.002 M Spermine' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-04-23 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979183 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL10U2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979183 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL10U2 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 58.73 _reflns.entry_id 9URY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.33 _reflns.d_resolution_low 48.07 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9919 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.700 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.041 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.112 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.33 _reflns_shell.d_res_low 2.45 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1406 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.314 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.747 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.793 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 59.52 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9URY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.33 _refine.ls_d_res_low 29.64 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9860 _refine.ls_number_reflns_R_free 509 _refine.ls_number_reflns_R_work 9351 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.70 _refine.ls_percent_reflns_R_free 5.16 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2051 _refine.ls_R_factor_R_free 0.2449 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2028 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.6565 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3463 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.33 _refine_hist.d_res_low 29.64 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 1656 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1562 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0100 ? 1794 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.1293 ? 2766 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0603 ? 310 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0090 ? 78 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 33.4269 ? 864 ? f_dihedral_angle_d ? ? ? # _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id d_2 _refine_ls_restr_ncs.pdbx_ens_id ens_1 _refine_ls_restr_ncs.rms_dev_position 1.81429325819 _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_type 'Torsion NCS' _refine_ls_restr_ncs.pdbx_asym_id B _refine_ls_restr_ncs.pdbx_auth_asym_id A _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? _refine_ls_restr_ncs.ncs_model_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.33 2.56 . . 115 2280 99.92 . . . . 0.3505 . . . . . . . . . . . . . . . 0.3755 'X-RAY DIFFRACTION' 2.56 2.93 . . 120 2314 99.92 . . . . 0.3244 . . . . . . . . . . . . . . . 0.4034 'X-RAY DIFFRACTION' 2.93 3.69 . . 137 2283 99.42 . . . . 0.1902 . . . . . . . . . . . . . . . 0.2219 'X-RAY DIFFRACTION' 3.69 29.64 . . 137 2474 99.54 . . . . 0.1639 . . . . . . . . . . . . . . . 0.2103 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.matrix[1][1] 0.801216316354 _struct_ncs_oper.matrix[1][2] 0.597405266331 _struct_ncs_oper.matrix[1][3] -0.0340494077669 _struct_ncs_oper.matrix[2][1] -0.587407133814 _struct_ncs_oper.matrix[2][2] 0.774411493253 _struct_ncs_oper.matrix[2][3] -0.235031270818 _struct_ncs_oper.matrix[3][1] -0.114040666226 _struct_ncs_oper.matrix[3][2] 0.208311754057 _struct_ncs_oper.matrix[3][3] 0.971391239186 _struct_ncs_oper.vector[1] -8.47718310284 _struct_ncs_oper.vector[2] -21.0110076117 _struct_ncs_oper.vector[3] -28.6130010514 _struct_ncs_oper.details ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and (resid 1 through 38 or (resid 101 and (name C1" or name C2 or name C2" or name C3" or name C4 or name C4" or name C5 or name C5" or name C6 or name C8 or name N1 or name N3 or name N6 or name N7 or name N9 or name O2" or name O3" or name O4" or name O5")))) ; ens_1 d_2 ;(chain "B" and (resid 1 through 38 or (resid 101 and (name C1" or name C2 or name C2" or name C3" or name C4 or name C4" or name C5 or name C5" or name C6 or name C8 or name N1 or name N3 or name N6 or name N7 or name N9 or name O2" or name O3" or name O4" or name O5")))) ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 B DA 1 . B DT 14 . A DA 1 A DT 14 ? ? ens_1 d_1 2 L ADN . . L ADN . . A ADN 101 A ADN 101 ? ? ens_1 d_2 1 A DA 1 . A DT 14 . B DA 1 B DT 14 ? ? ens_1 d_2 2 C ADN . . C ADN . . B ADN 101 B ADN 101 ? ? # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # _struct_ncs_ens_gen.ens_id ens_1 _struct_ncs_ens_gen.dom_id_1 d_2 _struct_ncs_ens_gen.dom_id_2 d_1 _struct_ncs_ens_gen.oper_id 1 # _struct.entry_id 9URY _struct.title 'Crystal structure of Ade1304 DNA aptamer (Ade1304b) bound to adenosine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9URY _struct_keywords.text 'Adenosine/ATP DNA aptamer, adenosine, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 2 ? M N N 3 ? N N N 4 ? O N N 5 ? P N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9URY _struct_ref.pdbx_db_accession 9URY _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9URY B 1 ? 38 ? 9URY 1 ? 38 ? 1 38 2 1 9URY A 1 ? 38 ? 9URY 1 ? 38 ? 1 38 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3630 ? 1 MORE -223 ? 1 'SSA (A^2)' 24980 ? 2 'ABSA (A^2)' 890 ? 2 MORE -53 ? 2 'SSA (A^2)' 13120 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,4 A,C,D,E,F,G,H,I,J,K,O 1 2,3 B,L,M,N,P 2 1 A,C,D,E,F,G,H,I,J,K,O 2 2 B,L,M,N,P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_554 x,y,z-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -49.9340000000 3 'crystal symmetry operation' 2_554 -x,-y,z-1 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -49.9340000000 4 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 2 OP1 ? ? ? 1_555 F CA . CA ? ? B DC 2 B CA 104 1_555 ? ? ? ? ? ? ? 1.956 ? ? metalc2 metalc ? ? A DC 2 OP2 ? ? ? 1_555 M CA . CA ? ? B DC 2 A CA 102 1_554 ? ? ? ? ? ? ? 2.328 ? ? metalc3 metalc ? ? A DC 13 OP2 ? ? ? 1_555 G CA . CA ? ? B DC 13 B CA 105 1_555 ? ? ? ? ? ? ? 2.466 ? ? metalc4 metalc ? ? A DT 14 OP1 ? ? ? 1_555 D CA . CA ? ? B DT 14 B CA 102 2_555 ? ? ? ? ? ? ? 2.392 ? ? metalc5 metalc ? ? A DG 17 O6 ? ? ? 1_555 J NA . NA ? ? B DG 17 B NA 108 1_555 ? ? ? ? ? ? ? 2.979 ? ? metalc6 metalc ? ? A DT 18 O4 ? ? ? 1_555 J NA . NA ? ? B DT 18 B NA 108 1_555 ? ? ? ? ? ? ? 3.195 ? ? metalc7 metalc ? ? A DT 20 OP2 ? ? ? 1_555 D CA . CA ? ? B DT 20 B CA 102 1_555 ? ? ? ? ? ? ? 2.645 ? ? metalc8 metalc ? ? A DT 20 OP1 ? ? ? 1_555 H NA . NA ? ? B DT 20 B NA 106 1_555 ? ? ? ? ? ? ? 2.634 ? ? metalc9 metalc ? ? A DG 21 OP1 ? ? ? 1_555 G CA . CA ? ? B DG 21 B CA 105 2_555 ? ? ? ? ? ? ? 2.438 ? ? metalc10 metalc ? ? A DG 21 O6 ? ? ? 1_555 J NA . NA ? ? B DG 21 B NA 108 1_555 ? ? ? ? ? ? ? 2.681 ? ? metalc11 metalc ? ? A DA 24 OP1 ? ? ? 1_555 D CA . CA ? ? B DA 24 B CA 102 2_545 ? ? ? ? ? ? ? 2.506 ? ? metalc12 metalc ? ? A DT 27 O2 ? ? ? 1_555 I NA . NA ? ? B DT 27 B NA 107 1_555 ? ? ? ? ? ? ? 3.009 ? ? metalc13 metalc ? ? A DT 30 O4 ? ? ? 1_555 I NA . NA ? ? B DT 30 B NA 107 1_555 ? ? ? ? ? ? ? 2.908 ? ? metalc14 metalc ? ? D CA . CA ? ? ? 1_555 O HOH . O ? ? B CA 102 B HOH 212 2_555 ? ? ? ? ? ? ? 2.261 ? ? metalc15 metalc ? ? D CA . CA ? ? ? 1_555 O HOH . O ? ? B CA 102 B HOH 225 2_555 ? ? ? ? ? ? ? 2.737 ? ? metalc16 metalc ? ? E CA . CA ? ? ? 1_555 O HOH . O ? ? B CA 103 B HOH 205 1_555 ? ? ? ? ? ? ? 2.563 ? ? metalc17 metalc ? ? E CA . CA ? ? ? 1_555 O HOH . O ? ? B CA 103 B HOH 211 1_555 ? ? ? ? ? ? ? 2.521 ? ? metalc18 metalc ? ? E CA . CA ? ? ? 1_555 O HOH . O ? ? B CA 103 B HOH 216 2_545 ? ? ? ? ? ? ? 2.318 ? ? metalc19 metalc ? ? E CA . CA ? ? ? 1_555 O HOH . O ? ? B CA 103 B HOH 229 1_555 ? ? ? ? ? ? ? 1.982 ? ? metalc20 metalc ? ? E CA . CA ? ? ? 1_555 O HOH . O ? ? B CA 103 B HOH 230 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc21 metalc ? ? F CA . CA ? ? ? 1_556 B DG 29 OP1 ? ? B CA 104 A DG 29 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc22 metalc ? ? F CA . CA ? ? ? 1_555 P HOH . O ? ? B CA 104 A HOH 208 1_554 ? ? ? ? ? ? ? 2.117 ? ? metalc23 metalc ? ? G CA . CA ? ? ? 1_555 O HOH . O ? ? B CA 105 B HOH 220 1_555 ? ? ? ? ? ? ? 2.587 ? ? metalc24 metalc ? ? G CA . CA ? ? ? 1_555 O HOH . O ? ? B CA 105 B HOH 221 2_555 ? ? ? ? ? ? ? 3.199 ? ? metalc25 metalc ? ? G CA . CA ? ? ? 1_555 O HOH . O ? ? B CA 105 B HOH 222 1_555 ? ? ? ? ? ? ? 2.676 ? ? metalc26 metalc ? ? H NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 106 B HOH 213 1_555 ? ? ? ? ? ? ? 2.161 ? ? metalc27 metalc ? ? H NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 106 B HOH 222 2_555 ? ? ? ? ? ? ? 3.117 ? ? metalc28 metalc ? ? H NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 106 B HOH 224 1_555 ? ? ? ? ? ? ? 2.228 ? ? metalc29 metalc ? ? J NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 108 B HOH 203 1_555 ? ? ? ? ? ? ? 2.551 ? ? metalc30 metalc ? ? J NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 108 B HOH 203 2_555 ? ? ? ? ? ? ? 2.638 ? ? metalc31 metalc ? ? K NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 109 B HOH 223 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc32 metalc ? ? K NA . NA ? ? ? 1_555 O HOH . O ? ? B NA 109 B HOH 227 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc33 metalc ? ? B DC 7 O2 ? ? ? 1_555 M CA . CA ? ? A DC 7 A CA 102 1_555 ? ? ? ? ? ? ? 2.550 ? ? metalc34 metalc ? ? B DG 8 O6 ? ? ? 1_555 M CA . CA ? ? A DG 8 A CA 102 1_555 ? ? ? ? ? ? ? 2.149 ? ? metalc35 metalc ? ? B DG 29 OP2 ? ? ? 1_555 M CA . CA ? ? A DG 29 A CA 102 1_555 ? ? ? ? ? ? ? 2.537 ? ? metalc36 metalc ? ? M CA . CA ? ? ? 1_555 P HOH . O ? ? A CA 102 A HOH 206 1_555 ? ? ? ? ? ? ? 2.194 ? ? metalc37 metalc ? ? M CA . CA ? ? ? 1_555 P HOH . O ? ? A CA 102 A HOH 212 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc38 metalc ? ? N NA . NA ? ? ? 1_555 P HOH . O ? ? A NA 103 A HOH 211 1_555 ? ? ? ? ? ? ? 2.736 ? ? metalc39 metalc ? ? N NA . NA ? ? ? 1_555 P HOH . O ? ? A NA 103 A HOH 216 1_555 ? ? ? ? ? ? ? 1.905 ? ? hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 B DT 38 N3 ? ? A DA 1 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 B DT 38 O4 ? ? A DA 1 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 N3 ? ? ? 1_555 B DG 37 N1 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N4 ? ? ? 1_555 B DG 37 O6 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 O2 ? ? ? 1_555 B DG 37 N2 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N1 ? ? ? 1_555 B DC 36 N3 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DC 36 O2 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 O6 ? ? ? 1_555 B DC 36 N4 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 4 N1 ? ? ? 1_555 B DT 35 N3 ? ? A DA 4 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N6 ? ? ? 1_555 B DT 35 O4 ? ? A DA 4 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 5 N3 ? ? ? 1_555 B DG 34 N1 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N4 ? ? ? 1_555 B DG 34 O6 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 O2 ? ? ? 1_555 B DG 34 N2 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 6 N1 ? ? ? 1_555 B DT 33 N3 ? ? A DA 6 A DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 6 N6 ? ? ? 1_555 B DT 33 O4 ? ? A DA 6 A DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 8 N1 ? ? ? 1_555 B DG 29 N7 ? ? A DG 8 A DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog17 hydrog ? ? B DG 8 N2 ? ? ? 1_555 B DG 29 O6 ? ? A DG 8 A DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog18 hydrog ? ? B DA 10 N6 ? ? ? 1_555 B DG 28 N3 ? ? A DA 10 A DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? B DA 10 N7 ? ? ? 1_555 B DG 28 N2 ? ? A DA 10 A DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? B DA 10 N1 ? ? ? 1_555 B DT 30 N3 ? ? A DA 10 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 10 N6 ? ? ? 1_555 B DT 30 O4 ? ? A DA 10 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 N2 ? ? ? 1_555 B DC 13 N3 ? ? A DG 11 A DC 13 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog23 hydrog ? ? B DG 11 N1 ? ? ? 1_555 B DT 27 O2 ? ? A DG 11 A DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? B DG 11 O6 ? ? ? 1_555 B DT 27 N3 ? ? A DG 11 A DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? B DG 12 N1 ? ? ? 1_555 B DA 26 N1 ? ? A DG 12 A DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog26 hydrog ? ? B DG 12 O6 ? ? ? 1_555 B DA 26 N6 ? ? A DG 12 A DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog27 hydrog ? ? B DT 14 N3 ? ? ? 1_555 B DA 25 N1 ? ? A DT 14 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DT 14 O4 ? ? ? 1_555 B DA 25 N6 ? ? A DT 14 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 15 N3 ? ? ? 1_555 B DA 24 N1 ? ? A DT 15 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DT 15 O4 ? ? ? 1_555 B DA 24 N6 ? ? A DT 15 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DA 16 N1 ? ? ? 1_555 B DT 23 N3 ? ? A DA 16 A DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DA 16 N6 ? ? ? 1_555 B DT 23 O4 ? ? A DA 16 A DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 17 N1 ? ? ? 1_555 B DC 22 N3 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DG 17 N2 ? ? ? 1_555 B DC 22 O2 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DG 17 O6 ? ? ? 1_555 B DC 22 N4 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DT 18 O2 ? ? ? 1_555 B DG 21 N2 ? ? A DT 18 A DG 21 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog37 hydrog ? ? B DG 29 N2 ? ? ? 1_555 B DA 32 N7 ? ? A DG 29 A DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog38 hydrog ? ? B DG 29 N3 ? ? ? 1_555 B DA 32 N6 ? ? A DG 29 A DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog39 hydrog ? ? A DA 1 N1 ? ? ? 1_555 A DT 38 N3 ? ? B DA 1 B DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A DT 38 O4 ? ? B DA 1 B DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 37 N1 ? ? B DC 2 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 37 O6 ? ? B DC 2 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 37 N2 ? ? B DC 2 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 36 N3 ? ? B DG 3 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 36 O2 ? ? B DG 3 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 36 N4 ? ? B DG 3 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 35 N3 ? ? B DA 4 B DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 35 O4 ? ? B DA 4 B DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 34 N1 ? ? B DC 5 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 34 O6 ? ? B DC 5 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 34 N2 ? ? B DC 5 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 33 N3 ? ? B DA 6 B DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 33 O4 ? ? B DA 6 B DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 29 N7 ? ? B DG 8 B DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog55 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 29 O6 ? ? B DG 8 B DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog56 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DG 28 N3 ? ? B DA 10 B DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog57 hydrog ? ? A DA 10 N7 ? ? ? 1_555 A DG 28 N2 ? ? B DA 10 B DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog58 hydrog ? ? A DA 10 N1 ? ? ? 1_555 A DT 30 N3 ? ? B DA 10 B DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DT 30 O4 ? ? B DA 10 B DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DC 13 N3 ? ? B DG 11 B DC 13 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog61 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DT 27 O2 ? ? B DG 11 B DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog62 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DT 27 N3 ? ? B DG 11 B DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog63 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DT 30 O4 ? ? B DG 11 B DT 30 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog64 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DA 26 N1 ? ? B DG 12 B DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog65 hydrog ? ? A DG 12 O6 ? ? ? 1_555 A DA 26 N6 ? ? B DG 12 B DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog66 hydrog ? ? A DT 14 N3 ? ? ? 1_555 A DA 25 N1 ? ? B DT 14 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A DT 14 O4 ? ? ? 1_555 A DA 25 N6 ? ? B DT 14 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A DT 15 N3 ? ? ? 1_555 A DA 24 N1 ? ? B DT 15 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A DT 15 O4 ? ? ? 1_555 A DA 24 N6 ? ? B DT 15 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A DA 16 N1 ? ? ? 1_555 A DT 23 N3 ? ? B DA 16 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A DA 16 N6 ? ? ? 1_555 A DT 23 O4 ? ? B DA 16 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DC 22 N3 ? ? B DG 17 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DC 22 O2 ? ? B DG 17 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A DG 17 O6 ? ? ? 1_555 A DC 22 N4 ? ? B DG 17 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A DT 18 O2 ? ? ? 1_555 A DG 21 N1 ? ? B DT 18 B DG 21 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog76 hydrog ? ? A DG 29 N2 ? ? ? 1_555 A DA 32 N7 ? ? B DG 29 B DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog77 hydrog ? ? A DG 29 N3 ? ? ? 1_555 A DA 32 N6 ? ? B DG 29 B DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DC 2 ? B DC 2 ? 1_555 CA ? F CA . ? B CA 104 ? 1_555 OP1 ? B DG 29 ? A DG 29 ? 1_555 76.0 ? 2 OP1 ? A DC 2 ? B DC 2 ? 1_555 CA ? F CA . ? B CA 104 ? 1_555 O ? P HOH . ? A HOH 208 ? 1_554 118.0 ? 3 OP1 ? B DG 29 ? A DG 29 ? 1_555 CA ? F CA . ? B CA 104 ? 1_555 O ? P HOH . ? A HOH 208 ? 1_554 153.3 ? 4 OP2 ? A DC 2 ? B DC 2 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O2 ? B DC 7 ? A DC 7 ? 1_555 53.3 ? 5 OP2 ? A DC 2 ? B DC 2 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O6 ? B DG 8 ? A DG 8 ? 1_555 54.7 ? 6 O2 ? B DC 7 ? A DC 7 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O6 ? B DG 8 ? A DG 8 ? 1_555 2.1 ? 7 OP2 ? A DC 2 ? B DC 2 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 OP2 ? B DG 29 ? A DG 29 ? 1_555 53.7 ? 8 O2 ? B DC 7 ? A DC 7 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 OP2 ? B DG 29 ? A DG 29 ? 1_555 5.5 ? 9 O6 ? B DG 8 ? A DG 8 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 OP2 ? B DG 29 ? A DG 29 ? 1_555 4.0 ? 10 OP2 ? A DC 2 ? B DC 2 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O ? P HOH . ? A HOH 206 ? 1_555 54.2 ? 11 O2 ? B DC 7 ? A DC 7 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O ? P HOH . ? A HOH 206 ? 1_555 2.6 ? 12 O6 ? B DG 8 ? A DG 8 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O ? P HOH . ? A HOH 206 ? 1_555 1.0 ? 13 OP2 ? B DG 29 ? A DG 29 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O ? P HOH . ? A HOH 206 ? 1_555 3.1 ? 14 OP2 ? A DC 2 ? B DC 2 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O ? P HOH . ? A HOH 212 ? 1_555 51.3 ? 15 O2 ? B DC 7 ? A DC 7 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O ? P HOH . ? A HOH 212 ? 1_555 3.4 ? 16 O6 ? B DG 8 ? A DG 8 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O ? P HOH . ? A HOH 212 ? 1_555 3.5 ? 17 OP2 ? B DG 29 ? A DG 29 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O ? P HOH . ? A HOH 212 ? 1_555 3.6 ? 18 O ? P HOH . ? A HOH 206 ? 1_555 CA ? M CA . ? A CA 102 ? 1_554 O ? P HOH . ? A HOH 212 ? 1_555 2.9 ? 19 OP2 ? A DC 13 ? B DC 13 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 OP1 ? A DG 21 ? B DG 21 ? 1_555 148.6 ? 20 OP2 ? A DC 13 ? B DC 13 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? O HOH . ? B HOH 220 ? 1_555 124.5 ? 21 OP1 ? A DG 21 ? B DG 21 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? O HOH . ? B HOH 220 ? 1_555 78.5 ? 22 OP2 ? A DC 13 ? B DC 13 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? O HOH . ? B HOH 221 ? 2_555 92.9 ? 23 OP1 ? A DG 21 ? B DG 21 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? O HOH . ? B HOH 221 ? 2_555 59.9 ? 24 O ? O HOH . ? B HOH 220 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? O HOH . ? B HOH 221 ? 2_555 138.0 ? 25 OP2 ? A DC 13 ? B DC 13 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? O HOH . ? B HOH 222 ? 1_555 103.4 ? 26 OP1 ? A DG 21 ? B DG 21 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? O HOH . ? B HOH 222 ? 1_555 105.4 ? 27 O ? O HOH . ? B HOH 220 ? 1_555 CA ? G CA . ? B CA 105 ? 1_555 O ? O HOH . ? B HOH 222 ? 1_555 68.3 ? 28 O ? O HOH . ? B HOH 221 ? 2_555 CA ? G CA . ? B CA 105 ? 1_555 O ? O HOH . ? B HOH 222 ? 1_555 125.5 ? 29 OP1 ? A DT 14 ? B DT 14 ? 1_555 CA ? D CA . ? B CA 102 ? 2_555 OP2 ? A DT 20 ? B DT 20 ? 1_555 80.8 ? 30 OP1 ? A DT 14 ? B DT 14 ? 1_555 CA ? D CA . ? B CA 102 ? 2_555 OP1 ? A DA 24 ? B DA 24 ? 1_555 35.2 ? 31 OP2 ? A DT 20 ? B DT 20 ? 1_555 CA ? D CA . ? B CA 102 ? 2_555 OP1 ? A DA 24 ? B DA 24 ? 1_555 48.2 ? 32 OP1 ? A DT 14 ? B DT 14 ? 1_555 CA ? D CA . ? B CA 102 ? 2_555 O ? O HOH . ? B HOH 212 ? 2_555 85.7 ? 33 OP2 ? A DT 20 ? B DT 20 ? 1_555 CA ? D CA . ? B CA 102 ? 2_555 O ? O HOH . ? B HOH 212 ? 2_555 6.7 ? 34 OP1 ? A DA 24 ? B DA 24 ? 1_555 CA ? D CA . ? B CA 102 ? 2_555 O ? O HOH . ? B HOH 212 ? 2_555 52.0 ? 35 OP1 ? A DT 14 ? B DT 14 ? 1_555 CA ? D CA . ? B CA 102 ? 2_555 O ? O HOH . ? B HOH 225 ? 2_555 87.9 ? 36 OP2 ? A DT 20 ? B DT 20 ? 1_555 CA ? D CA . ? B CA 102 ? 2_555 O ? O HOH . ? B HOH 225 ? 2_555 8.7 ? 37 OP1 ? A DA 24 ? B DA 24 ? 1_555 CA ? D CA . ? B CA 102 ? 2_555 O ? O HOH . ? B HOH 225 ? 2_555 54.1 ? 38 O ? O HOH . ? B HOH 212 ? 2_555 CA ? D CA . ? B CA 102 ? 2_555 O ? O HOH . ? B HOH 225 ? 2_555 2.3 ? 39 O6 ? A DG 17 ? B DG 17 ? 1_555 NA ? J NA . ? B NA 108 ? 1_555 O4 ? A DT 18 ? B DT 18 ? 1_555 117.4 ? 40 O6 ? A DG 17 ? B DG 17 ? 1_555 NA ? J NA . ? B NA 108 ? 1_555 O6 ? A DG 21 ? B DG 21 ? 1_555 81.6 ? 41 O4 ? A DT 18 ? B DT 18 ? 1_555 NA ? J NA . ? B NA 108 ? 1_555 O6 ? A DG 21 ? B DG 21 ? 1_555 141.3 ? 42 O6 ? A DG 17 ? B DG 17 ? 1_555 NA ? J NA . ? B NA 108 ? 1_555 O ? O HOH . ? B HOH 203 ? 1_555 64.5 ? 43 O4 ? A DT 18 ? B DT 18 ? 1_555 NA ? J NA . ? B NA 108 ? 1_555 O ? O HOH . ? B HOH 203 ? 1_555 78.6 ? 44 O6 ? A DG 21 ? B DG 21 ? 1_555 NA ? J NA . ? B NA 108 ? 1_555 O ? O HOH . ? B HOH 203 ? 1_555 138.5 ? 45 O6 ? A DG 17 ? B DG 17 ? 1_555 NA ? J NA . ? B NA 108 ? 1_555 O ? O HOH . ? B HOH 203 ? 2_555 119.4 ? 46 O4 ? A DT 18 ? B DT 18 ? 1_555 NA ? J NA . ? B NA 108 ? 1_555 O ? O HOH . ? B HOH 203 ? 2_555 57.1 ? 47 O6 ? A DG 21 ? B DG 21 ? 1_555 NA ? J NA . ? B NA 108 ? 1_555 O ? O HOH . ? B HOH 203 ? 2_555 144.8 ? 48 O ? O HOH . ? B HOH 203 ? 1_555 NA ? J NA . ? B NA 108 ? 1_555 O ? O HOH . ? B HOH 203 ? 2_555 55.1 ? 49 OP1 ? A DT 20 ? B DT 20 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 213 ? 1_555 69.4 ? 50 OP1 ? A DT 20 ? B DT 20 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 222 ? 2_555 78.3 ? 51 O ? O HOH . ? B HOH 213 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 222 ? 2_555 71.8 ? 52 OP1 ? A DT 20 ? B DT 20 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 224 ? 1_555 88.9 ? 53 O ? O HOH . ? B HOH 213 ? 1_555 NA ? H NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 224 ? 1_555 132.1 ? 54 O ? O HOH . ? B HOH 222 ? 2_555 NA ? H NA . ? B NA 106 ? 1_555 O ? O HOH . ? B HOH 224 ? 1_555 61.9 ? 55 O2 ? A DT 27 ? B DT 27 ? 1_555 NA ? I NA . ? B NA 107 ? 1_555 O4 ? A DT 30 ? B DT 30 ? 1_555 81.1 ? 56 O ? O HOH . ? B HOH 205 ? 1_555 CA ? E CA . ? B CA 103 ? 1_555 O ? O HOH . ? B HOH 211 ? 1_555 74.0 ? 57 O ? O HOH . ? B HOH 205 ? 1_555 CA ? E CA . ? B CA 103 ? 1_555 O ? O HOH . ? B HOH 216 ? 2_545 87.1 ? 58 O ? O HOH . ? B HOH 211 ? 1_555 CA ? E CA . ? B CA 103 ? 1_555 O ? O HOH . ? B HOH 216 ? 2_545 161.0 ? 59 O ? O HOH . ? B HOH 205 ? 1_555 CA ? E CA . ? B CA 103 ? 1_555 O ? O HOH . ? B HOH 229 ? 1_555 86.9 ? 60 O ? O HOH . ? B HOH 211 ? 1_555 CA ? E CA . ? B CA 103 ? 1_555 O ? O HOH . ? B HOH 229 ? 1_555 72.5 ? 61 O ? O HOH . ? B HOH 216 ? 2_545 CA ? E CA . ? B CA 103 ? 1_555 O ? O HOH . ? B HOH 229 ? 1_555 104.9 ? 62 O ? O HOH . ? B HOH 205 ? 1_555 CA ? E CA . ? B CA 103 ? 1_555 O ? O HOH . ? B HOH 230 ? 1_555 142.8 ? 63 O ? O HOH . ? B HOH 211 ? 1_555 CA ? E CA . ? B CA 103 ? 1_555 O ? O HOH . ? B HOH 230 ? 1_555 134.7 ? 64 O ? O HOH . ? B HOH 216 ? 2_545 CA ? E CA . ? B CA 103 ? 1_555 O ? O HOH . ? B HOH 230 ? 1_555 61.5 ? 65 O ? O HOH . ? B HOH 229 ? 1_555 CA ? E CA . ? B CA 103 ? 1_555 O ? O HOH . ? B HOH 230 ? 1_555 82.8 ? 66 O ? O HOH . ? B HOH 223 ? 1_555 NA ? K NA . ? B NA 109 ? 1_555 O ? O HOH . ? B HOH 227 ? 1_555 107.0 ? 67 O ? P HOH . ? A HOH 211 ? 1_555 NA ? N NA . ? A NA 103 ? 1_555 O ? P HOH . ? A HOH 216 ? 1_555 75.2 ? # _pdbx_entry_details.entry_id 9URY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 213 ? ? O A HOH 215 ? ? 2.03 2 1 O B HOH 226 ? ? O B HOH 228 ? ? 2.12 3 1 OP2 A DG 21 ? ? O A HOH 201 ? ? 2.13 4 1 OP2 A DG 37 ? ? O A HOH 202 ? ? 2.13 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 214 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 214 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_575 _pdbx_validate_symm_contact.dist 1.53 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DC 7 ? ? "C3'" B DC 7 ? ? 1.382 1.419 -0.037 0.006 N 2 1 "O3'" B DA 16 ? ? "C3'" B DA 16 ? ? 1.364 1.419 -0.055 0.006 N 3 1 "O3'" B DG 17 ? ? "C3'" B DG 17 ? ? 1.373 1.419 -0.046 0.006 N 4 1 "O3'" A DA 16 ? ? "C3'" A DA 16 ? ? 1.376 1.419 -0.043 0.006 N 5 1 "O3'" A DG 17 ? ? "C3'" A DG 17 ? ? 1.379 1.419 -0.040 0.006 N 6 1 "O3'" A DA 24 ? ? "C3'" A DA 24 ? ? 1.372 1.419 -0.047 0.006 N 7 1 "O3'" A DA 25 ? ? "C3'" A DA 25 ? ? 1.381 1.419 -0.038 0.006 N 8 1 "O3'" A DT 35 ? ? "C3'" A DT 35 ? ? 1.380 1.419 -0.039 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 110.61 108.30 2.31 0.30 N 2 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 110.90 108.30 2.60 0.30 N 3 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 103.75 108.00 -4.25 0.70 N 4 1 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9 B DA 24 ? ? 110.46 108.30 2.16 0.30 N 5 1 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 110.15 108.30 1.85 0.30 N 6 1 "O4'" A DG 28 ? ? "C1'" A DG 28 ? ? N9 A DG 28 ? ? 110.79 108.30 2.49 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B HOH 206 ? O HOH . 2 1 A HOH 209 ? P HOH . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x+1/2,y+1/2,-z 4 -x,-y,z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -29.8954452362 11.280810607 -1.26550782558 0.375796322229 ? -0.0287223784328 ? -0.0581273042932 ? 0.590028538718 ? 0.00440397178041 ? 0.62422771671 ? 7.56206633291 ? 0.454633097126 ? 2.60724491929 ? 0.858599140575 ? 2.22599322412 ? 5.56153169823 ? -0.494557265294 ? 0.0430573472171 ? 1.0896132057 ? -0.354713858595 ? -0.196725908625 ? 0.0424770831216 ? -0.347732949373 ? -0.499168093389 ? 0.74317610171 ? 2 'X-RAY DIFFRACTION' ? refined -11.8026125259 14.9305936254 6.5325280711 0.356721703366 ? 0.000935334162067 ? -0.0681159022713 ? 0.48025034744 ? -0.00659223897042 ? 0.596977399025 ? 3.00735442129 ? 2.76961358037 ? 1.76194297902 ? 3.16865119303 ? 2.00111479481 ? 1.5878917968 ? -0.47937711733 ? -1.26610647358 ? 0.951822206392 ? -0.0117392529792 ? 0.0210036455454 ? 0.131622434112 ? -0.255058815596 ? -0.284014466873 ? 0.398129219009 ? 3 'X-RAY DIFFRACTION' ? refined -35.0234168583 7.89252309583 -6.95605942332 0.506741385504 ? -0.0943041187693 ? -0.123981936922 ? 0.829787144003 ? -0.0730153067389 ? 0.626334870589 ? 6.44126285479 ? 3.45412818093 ? 3.46959331028 ? 5.28016823705 ? 2.28827833298 ? 2.51707580661 ? -0.356084501018 ? 0.810361364611 ? -0.504254704093 ? -0.271474505075 ? 0.373895821299 ? -0.402196733578 ? -0.476333044857 ? -0.0119119272901 ? -0.000306549825394 ? 4 'X-RAY DIFFRACTION' ? refined -31.517573891 7.61060870806 -25.3092301588 0.473033657304 ? 0.226465628869 ? 0.00409192775926 ? 0.848140777451 ? 0.0166773870551 ? 0.590758339451 ? 3.72438139121 ? -1.84560774879 ? 3.93335102096 ? 1.51838133506 ? -1.63860304819 ? 4.07973898193 ? -0.879222766719 ? -0.677132505856 ? -0.227203064565 ? 0.690742636742 ? 0.762461561049 ? 0.218472692006 ? -0.95128462453 ? -1.07332220267 ? 0.073774721874 ? 5 'X-RAY DIFFRACTION' ? refined -10.1890850116 -2.5936326753 -18.6752679528 0.389015280251 ? 0.0666210173634 ? 0.0179301036678 ? 0.274010115164 ? 0.0294722015641 ? 0.497560767024 ? 9.32098130814 ? -1.78155583874 ? -0.0908557130611 ? 1.21375965249 ? 0.582212958017 ? 3.29184387569 ? -0.24844067952 ? -0.449361270775 ? 0.0853740713046 ? 0.189404242217 ? 0.252193485379 ? -0.0233087941456 ? -0.115360107541 ? -0.372570471879 ? 0.0507445555628 ? 6 'X-RAY DIFFRACTION' ? refined -32.1702078043 7.36543403091 -30.0133677299 0.626422801518 ? 0.127686650373 ? -0.055964668538 ? 0.814025359554 ? 0.216425328625 ? 0.507875811857 ? 8.86142856231 ? -0.0438956732201 ? 1.13706458268 ? 2.39102746672 ? 0.426280519648 ? 3.20478886131 ? -0.228768412614 ? 1.47365199295 ? 0.166255508051 ? -0.318492071494 ? -0.284843209402 ? 0.150627437668 ? 0.200462486983 ? 0.411945197335 ? 0.541514378714 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 C ? A 1 ? C ? A 15 ? ? ;chain 'A' and (resid 1 through 15 ) ; 2 'X-RAY DIFFRACTION' 2 C ? A 16 ? C ? A 30 ? ? ;chain 'A' and (resid 16 through 30 ) ; 3 'X-RAY DIFFRACTION' 3 C ? A 31 ? C ? A 38 ? ? ;chain 'A' and (resid 31 through 38 ) ; 4 'X-RAY DIFFRACTION' 4 A ? B 1 ? A ? B 10 ? ? ;chain 'B' and (resid 1 through 10 ) ; 5 'X-RAY DIFFRACTION' 5 A ? B 11 ? A ? B 30 ? ? ;chain 'B' and (resid 11 through 30 ) ; 6 'X-RAY DIFFRACTION' 6 A ? B 31 ? A ? B 38 ? ? ;chain 'B' and (resid 31 through 38 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADN "O5'" O N N 1 ADN "C5'" C N N 2 ADN "C4'" C N R 3 ADN "O4'" O N N 4 ADN "C3'" C N S 5 ADN "O3'" O N N 6 ADN "C2'" C N R 7 ADN "O2'" O N N 8 ADN "C1'" C N R 9 ADN N9 N Y N 10 ADN C8 C Y N 11 ADN N7 N Y N 12 ADN C5 C Y N 13 ADN C6 C Y N 14 ADN N6 N N N 15 ADN N1 N Y N 16 ADN C2 C Y N 17 ADN N3 N Y N 18 ADN C4 C Y N 19 ADN "HO5'" H N N 20 ADN "H5'1" H N N 21 ADN "H5'2" H N N 22 ADN "H4'" H N N 23 ADN "H3'" H N N 24 ADN "HO3'" H N N 25 ADN "H2'" H N N 26 ADN "HO2'" H N N 27 ADN "H1'" H N N 28 ADN H8 H N N 29 ADN HN61 H N N 30 ADN HN62 H N N 31 ADN H2 H N N 32 CA CA CA N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 DT OP3 O N N 141 DT P P N N 142 DT OP1 O N N 143 DT OP2 O N N 144 DT "O5'" O N N 145 DT "C5'" C N N 146 DT "C4'" C N R 147 DT "O4'" O N N 148 DT "C3'" C N S 149 DT "O3'" O N N 150 DT "C2'" C N N 151 DT "C1'" C N R 152 DT N1 N N N 153 DT C2 C N N 154 DT O2 O N N 155 DT N3 N N N 156 DT C4 C N N 157 DT O4 O N N 158 DT C5 C N N 159 DT C7 C N N 160 DT C6 C N N 161 DT HOP3 H N N 162 DT HOP2 H N N 163 DT "H5'" H N N 164 DT "H5''" H N N 165 DT "H4'" H N N 166 DT "H3'" H N N 167 DT "HO3'" H N N 168 DT "H2'" H N N 169 DT "H2''" H N N 170 DT "H1'" H N N 171 DT H3 H N N 172 DT H71 H N N 173 DT H72 H N N 174 DT H73 H N N 175 DT H6 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 NA NA NA N N 180 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADN "O5'" "C5'" sing N N 1 ADN "O5'" "HO5'" sing N N 2 ADN "C5'" "C4'" sing N N 3 ADN "C5'" "H5'1" sing N N 4 ADN "C5'" "H5'2" sing N N 5 ADN "C4'" "O4'" sing N N 6 ADN "C4'" "C3'" sing N N 7 ADN "C4'" "H4'" sing N N 8 ADN "O4'" "C1'" sing N N 9 ADN "C3'" "O3'" sing N N 10 ADN "C3'" "C2'" sing N N 11 ADN "C3'" "H3'" sing N N 12 ADN "O3'" "HO3'" sing N N 13 ADN "C2'" "O2'" sing N N 14 ADN "C2'" "C1'" sing N N 15 ADN "C2'" "H2'" sing N N 16 ADN "O2'" "HO2'" sing N N 17 ADN "C1'" N9 sing N N 18 ADN "C1'" "H1'" sing N N 19 ADN N9 C8 sing Y N 20 ADN N9 C4 sing Y N 21 ADN C8 N7 doub Y N 22 ADN C8 H8 sing N N 23 ADN N7 C5 sing Y N 24 ADN C5 C6 sing Y N 25 ADN C5 C4 doub Y N 26 ADN C6 N6 sing N N 27 ADN C6 N1 doub Y N 28 ADN N6 HN61 sing N N 29 ADN N6 HN62 sing N N 30 ADN N1 C2 sing Y N 31 ADN C2 N3 doub Y N 32 ADN C2 H2 sing N N 33 ADN N3 C4 sing Y N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 DT OP3 P sing N N 147 DT OP3 HOP3 sing N N 148 DT P OP1 doub N N 149 DT P OP2 sing N N 150 DT P "O5'" sing N N 151 DT OP2 HOP2 sing N N 152 DT "O5'" "C5'" sing N N 153 DT "C5'" "C4'" sing N N 154 DT "C5'" "H5'" sing N N 155 DT "C5'" "H5''" sing N N 156 DT "C4'" "O4'" sing N N 157 DT "C4'" "C3'" sing N N 158 DT "C4'" "H4'" sing N N 159 DT "O4'" "C1'" sing N N 160 DT "C3'" "O3'" sing N N 161 DT "C3'" "C2'" sing N N 162 DT "C3'" "H3'" sing N N 163 DT "O3'" "HO3'" sing N N 164 DT "C2'" "C1'" sing N N 165 DT "C2'" "H2'" sing N N 166 DT "C2'" "H2''" sing N N 167 DT "C1'" N1 sing N N 168 DT "C1'" "H1'" sing N N 169 DT N1 C2 sing N N 170 DT N1 C6 sing N N 171 DT C2 O2 doub N N 172 DT C2 N3 sing N N 173 DT N3 C4 sing N N 174 DT N3 H3 sing N N 175 DT C4 O4 doub N N 176 DT C4 C5 sing N N 177 DT C5 C7 sing N N 178 DT C5 C6 doub N N 179 DT C7 H71 sing N N 180 DT C7 H72 sing N N 181 DT C7 H73 sing N N 182 DT C6 H6 sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9URY 'double helix' 9URY 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 A DT 38 1_555 0.162 -0.090 0.384 7.914 -6.407 -2.171 1 B_DA1:DT38_B B 1 ? B 38 ? 20 1 1 A DC 2 1_555 A DG 37 1_555 0.222 -0.108 0.278 5.519 -5.928 -1.075 2 B_DC2:DG37_B B 2 ? B 37 ? 19 1 1 A DG 3 1_555 A DC 36 1_555 -0.133 -0.177 0.352 4.777 -8.573 -2.312 3 B_DG3:DC36_B B 3 ? B 36 ? 19 1 1 A DA 4 1_555 A DT 35 1_555 0.082 -0.142 -0.083 -0.038 -3.943 0.063 4 B_DA4:DT35_B B 4 ? B 35 ? 20 1 1 A DC 5 1_555 A DG 34 1_555 0.240 -0.088 -0.124 9.847 -3.095 0.595 5 B_DC5:DG34_B B 5 ? B 34 ? 19 1 1 A DA 6 1_555 A DT 33 1_555 0.073 -0.129 0.129 11.922 -15.348 0.719 6 B_DA6:DT33_B B 6 ? B 33 ? 20 1 1 A DG 8 1_555 A DG 29 1_555 5.650 -0.532 -0.163 29.858 -18.960 -101.284 7 B_DG8:DG29_B B 8 ? B 29 ? 7 4 1 A DA 10 1_555 A DT 30 1_555 0.098 -0.091 -0.396 16.085 25.244 -0.691 8 B_DA10:DT30_B B 10 ? B 30 ? 20 1 1 A DG 11 1_555 A DT 27 1_555 -2.173 -0.670 -0.199 8.552 0.818 -7.067 9 B_DG11:DT27_B B 11 ? B 27 ? 28 1 1 A DG 12 1_555 A DA 26 1_555 -0.274 1.490 -0.260 16.169 -17.344 -17.224 10 B_DG12:DA26_B B 12 ? B 26 ? 8 1 1 A DT 14 1_555 A DA 25 1_555 -0.015 -0.108 0.007 -19.635 -27.707 4.255 11 B_DT14:DA25_B B 14 ? B 25 ? 20 1 1 A DT 15 1_555 A DA 24 1_555 -0.181 -0.089 0.155 -23.988 -10.690 4.471 12 B_DT15:DA24_B B 15 ? B 24 ? 20 1 1 A DA 16 1_555 A DT 23 1_555 0.253 -0.078 -0.133 -7.496 0.588 2.018 13 B_DA16:DT23_B B 16 ? B 23 ? 20 1 1 A DG 17 1_555 A DC 22 1_555 -0.231 -0.123 0.170 8.918 -8.032 2.337 14 B_DG17:DC22_B B 17 ? B 22 ? 19 1 1 A DT 18 1_555 A DG 21 1_555 2.874 0.655 -0.120 13.832 -14.466 42.227 15 B_DT18:DG21_B B 18 ? B 21 ? ? 1 1 B DA 1 1_555 B DT 38 1_555 -0.033 -0.202 0.226 3.415 -7.327 2.212 16 A_DA1:DT38_A A 1 ? A 38 ? 20 1 1 B DC 2 1_555 B DG 37 1_555 0.189 -0.141 0.298 4.274 -5.821 -0.866 17 A_DC2:DG37_A A 2 ? A 37 ? 19 1 1 B DG 3 1_555 B DC 36 1_555 -0.222 -0.117 0.236 5.224 -9.209 -0.900 18 A_DG3:DC36_A A 3 ? A 36 ? 19 1 1 B DA 4 1_555 B DT 35 1_555 0.122 -0.095 0.126 4.748 -8.205 1.015 19 A_DA4:DT35_A A 4 ? A 35 ? 20 1 1 B DC 5 1_555 B DG 34 1_555 0.225 -0.213 0.205 8.594 -11.038 -0.875 20 A_DC5:DG34_A A 5 ? A 34 ? 19 1 1 B DA 6 1_555 B DT 33 1_555 0.075 -0.079 -0.210 10.980 -19.729 2.087 21 A_DA6:DT33_A A 6 ? A 33 ? 20 1 1 B DG 8 1_555 B DG 29 1_555 5.727 -0.712 -0.264 27.399 -20.541 -104.865 22 A_DG8:DG29_A A 8 ? A 29 ? 7 4 1 B DA 10 1_555 B DT 30 1_555 -0.041 -0.047 0.130 24.154 31.171 -1.261 23 A_DA10:DT30_A A 10 ? A 30 ? 20 1 1 B DG 11 1_555 B DT 27 1_555 -2.324 -0.651 -0.157 8.967 5.335 -4.572 24 A_DG11:DT27_A A 11 ? A 27 ? 28 1 1 B DG 12 1_555 B DA 26 1_555 -0.130 1.504 -0.204 14.532 -15.724 -17.221 25 A_DG12:DA26_A A 12 ? A 26 ? 8 1 1 B DT 14 1_555 B DA 25 1_555 0.309 0.041 -0.053 -10.691 -26.494 7.761 26 A_DT14:DA25_A A 14 ? A 25 ? 20 1 1 B DT 15 1_555 B DA 24 1_555 0.020 -0.268 0.161 -16.474 -13.665 2.348 27 A_DT15:DA24_A A 15 ? A 24 ? 20 1 1 B DA 16 1_555 B DT 23 1_555 0.110 -0.191 -0.094 -10.727 -3.833 1.150 28 A_DA16:DT23_A A 16 ? A 23 ? 20 1 1 B DG 17 1_555 B DC 22 1_555 -0.311 -0.128 -0.142 -1.898 -8.409 2.046 29 A_DG17:DC22_A A 17 ? A 22 ? 19 1 1 B DT 18 1_555 B DG 21 1_555 2.823 1.112 -0.202 12.068 -13.117 44.892 30 A_DT18:DG21_A A 18 ? A 21 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 A DT 38 1_555 A DC 2 1_555 A DG 37 1_555 0.259 -0.152 3.451 1.829 0.490 33.809 -0.344 -0.133 3.457 0.841 -3.142 33.860 1 BB_DA1DC2:DG37DT38_BB B 1 ? B 38 ? B 2 ? B 37 ? 1 A DC 2 1_555 A DG 37 1_555 A DG 3 1_555 A DC 36 1_555 0.308 0.956 3.320 0.911 2.117 38.168 1.187 -0.353 3.373 3.235 -1.391 38.235 2 BB_DC2DG3:DC36DG37_BB B 2 ? B 37 ? B 3 ? B 36 ? 1 A DG 3 1_555 A DC 36 1_555 A DA 4 1_555 A DT 35 1_555 0.011 0.446 3.581 1.761 1.792 39.823 0.427 0.207 3.594 2.628 -2.583 39.899 3 BB_DG3DA4:DT35DC36_BB B 3 ? B 36 ? B 4 ? B 35 ? 1 A DA 4 1_555 A DT 35 1_555 A DC 5 1_555 A DG 34 1_555 0.202 -0.200 3.087 -0.016 2.247 28.810 -0.871 -0.409 3.063 4.508 0.033 28.895 4 BB_DA4DC5:DG34DT35_BB B 4 ? B 35 ? B 5 ? B 34 ? 1 A DC 5 1_555 A DG 34 1_555 A DA 6 1_555 A DT 33 1_555 -0.153 1.335 3.321 0.355 -0.009 43.381 1.807 0.241 3.320 -0.012 -0.480 43.383 5 BB_DC5DA6:DT33DG34_BB B 5 ? B 34 ? B 6 ? B 33 ? 1 A DA 6 1_555 A DT 33 1_555 A DG 8 1_555 A DG 29 1_555 1.296 5.461 2.991 14.641 -15.389 82.187 4.362 -0.681 2.293 -11.536 -10.975 84.413 6 BB_DA6DG8:DG29DT33_BB B 6 ? B 33 ? B 8 ? B 29 ? 1 A DA 10 1_555 A DT 30 1_555 A DG 11 1_555 A DT 27 1_555 4.063 1.824 2.907 22.582 13.531 52.280 1.013 -2.739 4.499 14.371 -23.985 58.114 7 BB_DA10DG11:DT27DT30_BB B 10 ? B 30 ? B 11 ? B 27 ? 1 A DG 11 1_555 A DT 27 1_555 A DG 12 1_555 A DA 26 1_555 -1.881 0.483 3.184 -2.126 4.567 37.689 0.161 2.618 3.315 7.031 3.273 38.012 8 BB_DG11DG12:DA26DT27_BB B 11 ? B 27 ? B 12 ? B 26 ? 1 A DG 12 1_555 A DA 26 1_555 A DT 14 1_555 A DA 25 1_555 -1.296 -0.011 3.749 -9.994 -1.388 57.236 0.075 0.710 3.906 -1.437 10.344 58.045 9 BB_DG12DT14:DA25DA26_BB B 12 ? B 26 ? B 14 ? B 25 ? 1 A DT 14 1_555 A DA 25 1_555 A DT 15 1_555 A DA 24 1_555 0.665 0.958 3.358 -1.405 -0.897 42.550 1.412 -1.060 3.315 -1.235 1.936 42.582 10 BB_DT14DT15:DA24DA25_BB B 14 ? B 25 ? B 15 ? B 24 ? 1 A DT 15 1_555 A DA 24 1_555 A DA 16 1_555 A DT 23 1_555 -0.170 1.245 3.163 -1.530 6.504 25.271 0.955 -0.048 3.376 14.545 3.422 26.126 11 BB_DT15DA16:DT23DA24_BB B 15 ? B 24 ? B 16 ? B 23 ? 1 A DA 16 1_555 A DT 23 1_555 A DG 17 1_555 A DC 22 1_555 -0.073 0.693 3.041 -2.991 3.345 28.815 0.688 -0.470 3.092 6.670 5.965 29.155 12 BB_DA16DG17:DC22DT23_BB B 16 ? B 23 ? B 17 ? B 22 ? 1 A DG 17 1_555 A DC 22 1_555 A DT 18 1_555 A DG 21 1_555 2.198 0.207 3.327 6.446 5.096 37.112 -0.382 -2.490 3.640 7.889 -9.979 37.979 13 BB_DG17DT18:DG21DC22_BB B 17 ? B 22 ? B 18 ? B 21 ? 1 B DA 1 1_555 B DT 38 1_555 B DC 2 1_555 B DG 37 1_555 0.162 -0.522 3.309 0.023 3.228 32.710 -1.477 -0.282 3.244 5.715 -0.040 32.865 14 AA_DA1DC2:DG37DT38_AA A 1 ? A 38 ? A 2 ? A 37 ? 1 B DC 2 1_555 B DG 37 1_555 B DG 3 1_555 B DC 36 1_555 0.059 0.484 3.285 1.528 4.020 36.248 0.210 0.120 3.317 6.434 -2.446 36.493 15 AA_DC2DG3:DC36DG37_AA A 2 ? A 37 ? A 3 ? A 36 ? 1 B DG 3 1_555 B DC 36 1_555 B DA 4 1_555 B DT 35 1_555 -0.129 0.419 3.331 2.103 1.425 37.896 0.458 0.471 3.333 2.191 -3.233 37.978 16 AA_DG3DA4:DT35DC36_AA A 3 ? A 36 ? A 4 ? A 35 ? 1 B DA 4 1_555 B DT 35 1_555 B DC 5 1_555 B DG 34 1_555 -0.033 0.424 3.239 0.015 0.119 33.695 0.712 0.060 3.240 0.205 -0.026 33.695 17 AA_DA4DC5:DG34DT35_AA A 4 ? A 35 ? A 5 ? A 34 ? 1 B DC 5 1_555 B DG 34 1_555 B DA 6 1_555 B DT 33 1_555 0.431 2.871 3.340 8.271 -9.726 52.855 3.718 0.012 2.843 -10.749 -9.141 54.267 18 AA_DC5DA6:DT33DG34_AA A 5 ? A 34 ? A 6 ? A 33 ? 1 B DA 6 1_555 B DT 33 1_555 B DG 8 1_555 B DG 29 1_555 1.402 5.130 2.869 10.584 -14.852 78.135 4.304 -0.872 2.172 -11.636 -8.292 79.903 19 AA_DA6DG8:DG29DT33_AA A 6 ? A 33 ? A 8 ? A 29 ? 1 B DA 10 1_555 B DT 30 1_555 B DG 11 1_555 B DT 27 1_555 4.079 1.857 3.258 25.619 13.149 50.758 0.964 -2.354 4.964 14.119 -27.509 57.883 20 AA_DA10DG11:DT27DT30_AA A 10 ? A 30 ? A 11 ? A 27 ? 1 B DG 11 1_555 B DT 27 1_555 B DG 12 1_555 B DA 26 1_555 -1.957 0.668 3.284 -1.201 3.311 40.797 0.585 2.663 3.379 4.739 1.718 40.943 21 AA_DG11DG12:DA26DT27_AA A 11 ? A 27 ? A 12 ? A 26 ? 1 B DG 12 1_555 B DA 26 1_555 B DT 14 1_555 B DA 25 1_555 -0.902 -0.140 3.508 -6.204 -0.255 55.787 -0.133 0.574 3.582 -0.272 6.607 56.104 22 AA_DG12DT14:DA25DA26_AA A 12 ? A 26 ? A 14 ? A 25 ? 1 B DT 14 1_555 B DA 25 1_555 B DT 15 1_555 B DA 24 1_555 0.208 0.209 3.386 -0.251 3.293 37.459 -0.120 -0.356 3.390 5.116 0.391 37.599 23 AA_DT14DT15:DA24DA25_AA A 14 ? A 25 ? A 15 ? A 24 ? 1 B DT 15 1_555 B DA 24 1_555 B DA 16 1_555 B DT 23 1_555 0.017 0.424 3.240 2.336 3.471 31.714 0.143 0.391 3.259 6.317 -4.252 31.982 24 AA_DT15DA16:DT23DA24_AA A 15 ? A 24 ? A 16 ? A 23 ? 1 B DA 16 1_555 B DT 23 1_555 B DG 17 1_555 B DC 22 1_555 0.047 0.453 3.207 -0.765 7.569 28.402 -0.730 -0.257 3.215 15.087 1.525 29.383 25 AA_DA16DG17:DC22DT23_AA A 16 ? A 23 ? A 17 ? A 22 ? 1 B DG 17 1_555 B DC 22 1_555 B DT 18 1_555 B DG 21 1_555 2.256 0.291 3.122 4.427 1.345 38.596 0.275 -2.855 3.359 2.027 -6.668 38.862 26 AA_DG17DT18:DG21DC22_AA A 17 ? A 22 ? A 18 ? A 21 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'BA SAD' # _space_group.name_H-M_alt 'P 21 21 2' _space_group.name_Hall 'P 2 2ab' _space_group.IT_number 18 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9URY _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.005624 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.041651 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020026 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #