HEADER PLANT PROTEIN 11-MAY-25 9UW1 TITLE CRYSTAL STRUCTURE OF CDC48A-N DOMAIN IN COMPLEX WITH PUX5 SHP BOX TITLE 2 MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CONTROL PROTEIN 48 HOMOLOG A,PLANT UBX COMPND 3 DOMAIN-CONTAINING PROTEIN 5; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: ATCDC48A,PUX5; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: RESIDUE 1-5: EXPRESSION TAG RESIDUE 6-176: CDC48A-N COMPND 8 DOMAIN RESIDUE 177-186: PUX5 SHP BOX MOTIF,RESIDUE 1-5: EXPRESSION COMPND 9 TAG RESIDUE 6-176: CDC48A-N DOMAIN RESIDUE 177-186: PUX5 SHP BOX COMPND 10 MOTIF,RESIDUE 1-5: EXPRESSION TAG RESIDUE 6-176: CDC48A-N DOMAIN COMPND 11 RESIDUE 177-186: PUX5 SHP BOX MOTIF,RESIDUE 1-5: EXPRESSION TAG COMPND 12 RESIDUE 6-176: CDC48A-N DOMAIN RESIDUE 177-186: PUX5 SHP BOX MOTIF SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CDC48A, CDC48, AT3G09840, F8A24.11, PUX5, AT4G15410, DL3750W, SOURCE 6 FCAALL.290; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ATPASE, UBIQUITINATION, COFACTOR, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.T.AROLD,J.ZHANG REVDAT 1 04-FEB-26 9UW1 0 JRNL AUTH J.ZHANG,J.WANG,A.SANDHOLU,U.F.SHAHUL HAMEED,S.T.AROLD JRNL TITL PLANT UBX DOMAIN-CONTAINING PROTEINS USE DISTINCT STRATEGIES JRNL TITL 2 TO STABLY ENGAGE THE UNFOLDASE CDC48A. JRNL REF PLANT CELL.PHYSIOL. 2025 JRNL REFN ESSN 1471-9053 JRNL PMID 41459762 JRNL DOI 10.1093/PCP/PCAF173 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.1_5286: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 48222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.7500 - 4.9300 1.00 3150 171 0.1885 0.2181 REMARK 3 2 4.9300 - 3.9100 1.00 3000 180 0.1571 0.1647 REMARK 3 3 3.9100 - 3.4200 1.00 3008 137 0.1713 0.1983 REMARK 3 4 3.4100 - 3.1000 1.00 2972 149 0.1958 0.2174 REMARK 3 5 3.1000 - 2.8800 1.00 2949 154 0.1942 0.2350 REMARK 3 6 2.8800 - 2.7100 1.00 2954 147 0.2018 0.2273 REMARK 3 7 2.7100 - 2.5700 1.00 2918 161 0.2168 0.2858 REMARK 3 8 2.5700 - 2.4600 1.00 2901 171 0.2339 0.2799 REMARK 3 9 2.4600 - 2.3700 1.00 2956 131 0.2228 0.2976 REMARK 3 10 2.3700 - 2.2900 1.00 2936 144 0.2181 0.2515 REMARK 3 11 2.2900 - 2.2100 1.00 2893 160 0.2054 0.2476 REMARK 3 12 2.2100 - 2.1500 1.00 2869 187 0.2090 0.2640 REMARK 3 13 2.1500 - 2.0900 0.96 2819 149 0.2250 0.2800 REMARK 3 14 2.0900 - 2.0400 0.88 2554 150 0.2506 0.2543 REMARK 3 15 2.0400 - 2.0000 0.75 2177 107 0.2761 0.3146 REMARK 3 16 2.0000 - 1.9500 0.61 1772 101 0.3113 0.3396 REMARK 3 17 1.9500 - 1.9200 0.30 846 49 0.3577 0.3195 REMARK 3 18 1.9200 - 1.8800 0.03 95 5 0.4748 0.3806 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4568 REMARK 3 ANGLE : 0.688 6132 REMARK 3 CHIRALITY : 0.051 677 REMARK 3 PLANARITY : 0.006 825 REMARK 3 DIHEDRAL : 18.640 1752 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 23:194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.031 -15.764 -19.199 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.1671 REMARK 3 T33: 0.1954 T12: -0.0253 REMARK 3 T13: 0.0223 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.0055 L22: 2.8542 REMARK 3 L33: 1.5943 L12: -0.9685 REMARK 3 L13: 0.3143 L23: -0.1042 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: -0.0552 S13: -0.2227 REMARK 3 S21: 0.0586 S22: 0.0548 S23: 0.2312 REMARK 3 S31: 0.2436 S32: -0.0274 S33: 0.0014 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 23:194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.465 1.043 3.218 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.2526 REMARK 3 T33: 0.1755 T12: 0.0097 REMARK 3 T13: 0.0097 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.1088 L22: 1.6692 REMARK 3 L33: 2.5830 L12: 0.8037 REMARK 3 L13: 1.1220 L23: 0.9230 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: -0.2194 S13: 0.0507 REMARK 3 S21: 0.0977 S22: -0.0887 S23: -0.0222 REMARK 3 S31: -0.0496 S32: -0.1346 S33: -0.0052 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 23:194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.142 -38.882 -32.936 REMARK 3 T TENSOR REMARK 3 T11: 0.1850 T22: 0.1907 REMARK 3 T33: 0.2633 T12: -0.0280 REMARK 3 T13: -0.0030 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 2.4922 L22: 1.6807 REMARK 3 L33: 2.6061 L12: -0.3211 REMARK 3 L13: -1.3991 L23: 0.1021 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: -0.2053 S13: 0.3314 REMARK 3 S21: 0.0697 S22: 0.0586 S23: -0.0802 REMARK 3 S31: -0.2529 S32: 0.2526 S33: 0.0313 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9UW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300059332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 74.753 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM MALONATE DIBASIC REMARK 280 MONOHYDRATE 0.1M BIS-TRIS PROPANE PH 8.5 20% W/V PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.03500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.30500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.30500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.03500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 195 REMARK 465 GLU A 196 REMARK 465 GLY A 197 REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 GLY A 201 REMARK 465 SER A 202 REMARK 465 GLY A 203 REMARK 465 GLY A 204 REMARK 465 SER A 205 REMARK 465 LYS A 206 REMARK 465 GLY B 197 REMARK 465 GLY B 198 REMARK 465 SER B 199 REMARK 465 GLY B 200 REMARK 465 GLY B 201 REMARK 465 SER B 202 REMARK 465 GLY B 203 REMARK 465 GLY B 204 REMARK 465 SER B 205 REMARK 465 LYS B 206 REMARK 465 ARG C 195 REMARK 465 GLU C 196 REMARK 465 GLY C 197 REMARK 465 GLY C 198 REMARK 465 SER C 199 REMARK 465 GLY C 200 REMARK 465 GLY C 201 REMARK 465 SER C 202 REMARK 465 GLY C 203 REMARK 465 GLY C 204 REMARK 465 SER C 205 REMARK 465 LYS C 206 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 93 O3A MLA A 301 1.91 REMARK 500 O HOH C 446 O HOH C 452 1.92 REMARK 500 O HOH C 425 O HOH C 454 1.94 REMARK 500 O HOH B 439 O HOH B 451 2.00 REMARK 500 O HOH A 448 O HOH A 453 2.01 REMARK 500 O HOH C 417 O HOH C 454 2.03 REMARK 500 O HOH C 449 O HOH C 456 2.09 REMARK 500 OG SER A 41 O HOH A 401 2.09 REMARK 500 O HOH A 438 O HOH A 457 2.14 REMARK 500 O HOH B 441 O HOH B 457 2.16 REMARK 500 O HOH A 461 O HOH A 462 2.18 REMARK 500 O HOH C 444 O HOH C 459 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 417 O HOH B 441 2654 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 39.73 -82.98 REMARK 500 TYR A 138 -57.66 -128.65 REMARK 500 LEU A 144 -119.34 42.37 REMARK 500 GLU A 176 -53.23 75.36 REMARK 500 PHE A 209 65.75 -116.82 REMARK 500 ARG B 68 19.01 57.83 REMARK 500 TYR B 138 -61.02 -122.61 REMARK 500 GLU B 145 19.60 55.53 REMARK 500 GLU B 176 -52.67 74.55 REMARK 500 PHE B 209 50.31 -110.42 REMARK 500 ASP C 38 44.04 -83.43 REMARK 500 TYR C 138 -56.80 -130.45 REMARK 500 LEU C 144 -118.55 46.90 REMARK 500 GLU C 176 -52.79 76.79 REMARK 500 PHE C 209 53.70 -109.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 151 0.26 SIDE CHAIN REMARK 500 ARG A 159 0.27 SIDE CHAIN REMARK 500 ARG B 151 0.26 SIDE CHAIN REMARK 500 ARG C 151 0.24 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9UW1 A 28 196 UNP P54609 CD48A_ARATH 28 196 DBREF 9UW1 A 206 216 UNP Q7Y175 PUX5_ARATH 301 311 DBREF 9UW1 B 28 196 UNP P54609 CD48A_ARATH 28 196 DBREF 9UW1 B 206 216 UNP Q7Y175 PUX5_ARATH 301 311 DBREF 9UW1 C 28 196 UNP P54609 CD48A_ARATH 28 196 DBREF 9UW1 C 206 216 UNP Q7Y175 PUX5_ARATH 301 311 SEQADV 9UW1 GLY A 23 UNP P54609 EXPRESSION TAG SEQADV 9UW1 PRO A 24 UNP P54609 EXPRESSION TAG SEQADV 9UW1 LEU A 25 UNP P54609 EXPRESSION TAG SEQADV 9UW1 GLY A 26 UNP P54609 EXPRESSION TAG SEQADV 9UW1 SER A 27 UNP P54609 EXPRESSION TAG SEQADV 9UW1 GLY A 197 UNP P54609 LINKER SEQADV 9UW1 GLY A 198 UNP P54609 LINKER SEQADV 9UW1 SER A 199 UNP P54609 LINKER SEQADV 9UW1 GLY A 200 UNP P54609 LINKER SEQADV 9UW1 GLY A 201 UNP P54609 LINKER SEQADV 9UW1 SER A 202 UNP P54609 LINKER SEQADV 9UW1 GLY A 203 UNP P54609 LINKER SEQADV 9UW1 GLY A 204 UNP P54609 LINKER SEQADV 9UW1 SER A 205 UNP P54609 LINKER SEQADV 9UW1 GLY B 23 UNP P54609 EXPRESSION TAG SEQADV 9UW1 PRO B 24 UNP P54609 EXPRESSION TAG SEQADV 9UW1 LEU B 25 UNP P54609 EXPRESSION TAG SEQADV 9UW1 GLY B 26 UNP P54609 EXPRESSION TAG SEQADV 9UW1 SER B 27 UNP P54609 EXPRESSION TAG SEQADV 9UW1 GLY B 197 UNP P54609 LINKER SEQADV 9UW1 GLY B 198 UNP P54609 LINKER SEQADV 9UW1 SER B 199 UNP P54609 LINKER SEQADV 9UW1 GLY B 200 UNP P54609 LINKER SEQADV 9UW1 GLY B 201 UNP P54609 LINKER SEQADV 9UW1 SER B 202 UNP P54609 LINKER SEQADV 9UW1 GLY B 203 UNP P54609 LINKER SEQADV 9UW1 GLY B 204 UNP P54609 LINKER SEQADV 9UW1 SER B 205 UNP P54609 LINKER SEQADV 9UW1 GLY C 23 UNP P54609 EXPRESSION TAG SEQADV 9UW1 PRO C 24 UNP P54609 EXPRESSION TAG SEQADV 9UW1 LEU C 25 UNP P54609 EXPRESSION TAG SEQADV 9UW1 GLY C 26 UNP P54609 EXPRESSION TAG SEQADV 9UW1 SER C 27 UNP P54609 EXPRESSION TAG SEQADV 9UW1 GLY C 197 UNP P54609 LINKER SEQADV 9UW1 GLY C 198 UNP P54609 LINKER SEQADV 9UW1 SER C 199 UNP P54609 LINKER SEQADV 9UW1 GLY C 200 UNP P54609 LINKER SEQADV 9UW1 GLY C 201 UNP P54609 LINKER SEQADV 9UW1 SER C 202 UNP P54609 LINKER SEQADV 9UW1 GLY C 203 UNP P54609 LINKER SEQADV 9UW1 GLY C 204 UNP P54609 LINKER SEQADV 9UW1 SER C 205 UNP P54609 LINKER SEQRES 1 A 194 GLY PRO LEU GLY SER ASN ARG LEU VAL VAL ASP GLU ALA SEQRES 2 A 194 ILE ASN ASP ASP ASN SER VAL VAL SER LEU HIS PRO ALA SEQRES 3 A 194 THR MET GLU LYS LEU GLN LEU PHE ARG GLY ASP THR ILE SEQRES 4 A 194 LEU ILE LYS GLY LYS LYS ARG LYS ASP THR VAL CYS ILE SEQRES 5 A 194 ALA LEU ALA ASP GLU THR CYS GLU GLU PRO LYS ILE ARG SEQRES 6 A 194 MET ASN LYS VAL VAL ARG SER ASN LEU ARG VAL ARG LEU SEQRES 7 A 194 GLY ASP VAL ILE SER VAL HIS GLN CYS PRO ASP VAL LYS SEQRES 8 A 194 TYR GLY LYS ARG VAL HIS ILE LEU PRO VAL ASP ASP THR SEQRES 9 A 194 VAL GLU GLY VAL THR GLY ASN LEU PHE ASP ALA TYR LEU SEQRES 10 A 194 LYS PRO TYR PHE LEU GLU ALA TYR ARG PRO VAL ARG LYS SEQRES 11 A 194 GLY ASP LEU PHE LEU VAL ARG GLY GLY MET ARG SER VAL SEQRES 12 A 194 GLU PHE LYS VAL ILE GLU THR ASP PRO ALA GLU TYR CYS SEQRES 13 A 194 VAL VAL ALA PRO ASP THR GLU ILE PHE CYS GLU GLY GLU SEQRES 14 A 194 PRO VAL LYS ARG GLU GLY GLY SER GLY GLY SER GLY GLY SEQRES 15 A 194 SER LYS ASN PRO PHE GLN GLY VAL GLY ARG THR LEU SEQRES 1 B 194 GLY PRO LEU GLY SER ASN ARG LEU VAL VAL ASP GLU ALA SEQRES 2 B 194 ILE ASN ASP ASP ASN SER VAL VAL SER LEU HIS PRO ALA SEQRES 3 B 194 THR MET GLU LYS LEU GLN LEU PHE ARG GLY ASP THR ILE SEQRES 4 B 194 LEU ILE LYS GLY LYS LYS ARG LYS ASP THR VAL CYS ILE SEQRES 5 B 194 ALA LEU ALA ASP GLU THR CYS GLU GLU PRO LYS ILE ARG SEQRES 6 B 194 MET ASN LYS VAL VAL ARG SER ASN LEU ARG VAL ARG LEU SEQRES 7 B 194 GLY ASP VAL ILE SER VAL HIS GLN CYS PRO ASP VAL LYS SEQRES 8 B 194 TYR GLY LYS ARG VAL HIS ILE LEU PRO VAL ASP ASP THR SEQRES 9 B 194 VAL GLU GLY VAL THR GLY ASN LEU PHE ASP ALA TYR LEU SEQRES 10 B 194 LYS PRO TYR PHE LEU GLU ALA TYR ARG PRO VAL ARG LYS SEQRES 11 B 194 GLY ASP LEU PHE LEU VAL ARG GLY GLY MET ARG SER VAL SEQRES 12 B 194 GLU PHE LYS VAL ILE GLU THR ASP PRO ALA GLU TYR CYS SEQRES 13 B 194 VAL VAL ALA PRO ASP THR GLU ILE PHE CYS GLU GLY GLU SEQRES 14 B 194 PRO VAL LYS ARG GLU GLY GLY SER GLY GLY SER GLY GLY SEQRES 15 B 194 SER LYS ASN PRO PHE GLN GLY VAL GLY ARG THR LEU SEQRES 1 C 194 GLY PRO LEU GLY SER ASN ARG LEU VAL VAL ASP GLU ALA SEQRES 2 C 194 ILE ASN ASP ASP ASN SER VAL VAL SER LEU HIS PRO ALA SEQRES 3 C 194 THR MET GLU LYS LEU GLN LEU PHE ARG GLY ASP THR ILE SEQRES 4 C 194 LEU ILE LYS GLY LYS LYS ARG LYS ASP THR VAL CYS ILE SEQRES 5 C 194 ALA LEU ALA ASP GLU THR CYS GLU GLU PRO LYS ILE ARG SEQRES 6 C 194 MET ASN LYS VAL VAL ARG SER ASN LEU ARG VAL ARG LEU SEQRES 7 C 194 GLY ASP VAL ILE SER VAL HIS GLN CYS PRO ASP VAL LYS SEQRES 8 C 194 TYR GLY LYS ARG VAL HIS ILE LEU PRO VAL ASP ASP THR SEQRES 9 C 194 VAL GLU GLY VAL THR GLY ASN LEU PHE ASP ALA TYR LEU SEQRES 10 C 194 LYS PRO TYR PHE LEU GLU ALA TYR ARG PRO VAL ARG LYS SEQRES 11 C 194 GLY ASP LEU PHE LEU VAL ARG GLY GLY MET ARG SER VAL SEQRES 12 C 194 GLU PHE LYS VAL ILE GLU THR ASP PRO ALA GLU TYR CYS SEQRES 13 C 194 VAL VAL ALA PRO ASP THR GLU ILE PHE CYS GLU GLY GLU SEQRES 14 C 194 PRO VAL LYS ARG GLU GLY GLY SER GLY GLY SER GLY GLY SEQRES 15 C 194 SER LYS ASN PRO PHE GLN GLY VAL GLY ARG THR LEU HET MLA A 301 9 HET MLA B 301 7 HET MLA B 302 7 HET GOL B 303 6 HET MLA B 304 7 HET MLA B 305 9 HET MLA C 301 7 HET GOL C 302 6 HET MLA C 303 9 HETNAM MLA MALONIC ACID HETNAM GOL GLYCEROL HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 MLA 7(C3 H4 O4) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 13 HOH *189(H2 O) HELIX 1 AA1 HIS A 46 LEU A 53 1 8 HELIX 2 AA2 ASN A 89 LEU A 96 1 8 HELIX 3 AA3 ASP A 124 VAL A 127 5 4 HELIX 4 AA4 ASN A 133 TYR A 138 1 6 HELIX 5 AA5 TYR A 138 LEU A 144 1 7 HELIX 6 AA6 HIS B 46 LEU B 53 1 8 HELIX 7 AA7 ASN B 89 LEU B 96 1 8 HELIX 8 AA8 ASP B 124 VAL B 127 5 4 HELIX 9 AA9 TYR B 138 LEU B 144 1 7 HELIX 10 AB1 HIS C 46 LEU C 53 1 8 HELIX 11 AB2 ASN C 89 ARG C 97 1 9 HELIX 12 AB3 ASP C 124 VAL C 127 5 4 HELIX 13 AB4 ASN C 133 TYR C 138 1 6 HELIX 14 AB5 TYR C 138 LEU C 144 1 7 SHEET 1 AA1 7 ARG A 29 GLU A 34 0 SHEET 2 AA1 7 LYS A 85 MET A 88 1 O ILE A 86 N ASP A 33 SHEET 3 AA1 7 VAL A 42 LEU A 45 -1 N SER A 44 O ARG A 87 SHEET 4 AA1 7 ASP A 70 ALA A 77 1 O LEU A 76 N VAL A 43 SHEET 5 AA1 7 THR A 60 LYS A 64 -1 N ILE A 61 O CYS A 73 SHEET 6 AA1 7 VAL A 103 GLN A 108 -1 O HIS A 107 N LEU A 62 SHEET 7 AA1 7 ARG A 29 GLU A 34 -1 N LEU A 30 O ILE A 104 SHEET 1 AA2 5 LEU A 155 VAL A 158 0 SHEET 2 AA2 5 VAL A 165 ASP A 173 -1 O PHE A 167 N PHE A 156 SHEET 3 AA2 5 ARG A 117 PRO A 122 -1 N LEU A 121 O LYS A 168 SHEET 4 AA2 5 GLU A 185 PHE A 187 1 O PHE A 187 N VAL A 118 SHEET 5 AA2 5 ARG A 214 THR A 215 -1 O ARG A 214 N ILE A 186 SHEET 1 AA3 2 ARG A 148 ARG A 151 0 SHEET 2 AA3 2 TYR A 177 VAL A 180 -1 O CYS A 178 N VAL A 150 SHEET 1 AA4 7 ARG B 29 GLU B 34 0 SHEET 2 AA4 7 LYS B 85 MET B 88 1 O ILE B 86 N ASP B 33 SHEET 3 AA4 7 VAL B 42 LEU B 45 -1 N SER B 44 O ARG B 87 SHEET 4 AA4 7 ASP B 70 ALA B 77 1 O LEU B 76 N VAL B 43 SHEET 5 AA4 7 THR B 60 LYS B 64 -1 N ILE B 63 O THR B 71 SHEET 6 AA4 7 VAL B 103 GLN B 108 -1 O SER B 105 N LYS B 64 SHEET 7 AA4 7 ARG B 29 GLU B 34 -1 N LEU B 30 O ILE B 104 SHEET 1 AA5 4 LEU B 155 VAL B 158 0 SHEET 2 AA5 4 VAL B 165 ASP B 173 -1 O VAL B 165 N VAL B 158 SHEET 3 AA5 4 ARG B 117 PRO B 122 -1 N LEU B 121 O LYS B 168 SHEET 4 AA5 4 GLU B 185 PHE B 187 1 O PHE B 187 N VAL B 118 SHEET 1 AA6 2 PRO B 149 ARG B 151 0 SHEET 2 AA6 2 TYR B 177 VAL B 179 -1 O CYS B 178 N VAL B 150 SHEET 1 AA7 7 ARG C 29 GLU C 34 0 SHEET 2 AA7 7 LYS C 85 MET C 88 1 O ILE C 86 N ASP C 33 SHEET 3 AA7 7 VAL C 42 LEU C 45 -1 N SER C 44 O ARG C 87 SHEET 4 AA7 7 ASP C 70 ALA C 77 1 O LEU C 76 N VAL C 43 SHEET 5 AA7 7 THR C 60 LYS C 64 -1 N ILE C 63 O THR C 71 SHEET 6 AA7 7 VAL C 103 GLN C 108 -1 O HIS C 107 N LEU C 62 SHEET 7 AA7 7 ARG C 29 GLU C 34 -1 N LEU C 30 O ILE C 104 SHEET 1 AA8 5 LEU C 155 VAL C 158 0 SHEET 2 AA8 5 VAL C 165 ASP C 173 -1 O PHE C 167 N PHE C 156 SHEET 3 AA8 5 ARG C 117 PRO C 122 -1 N LEU C 121 O LYS C 168 SHEET 4 AA8 5 GLU C 185 PHE C 187 1 O PHE C 187 N VAL C 118 SHEET 5 AA8 5 ARG C 214 THR C 215 -1 O ARG C 214 N ILE C 186 SHEET 1 AA9 2 ARG C 148 ARG C 151 0 SHEET 2 AA9 2 TYR C 177 VAL C 180 -1 O CYS C 178 N VAL C 150 CISPEP 1 ASP A 173 PRO A 174 0 9.16 CISPEP 2 ASP B 173 PRO B 174 0 6.37 CISPEP 3 ASP C 173 PRO C 174 0 7.68 CRYST1 60.070 101.420 110.610 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016647 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009041 0.00000 CONECT 4305 4306 4307 4308 CONECT 4306 4305 CONECT 4307 4305 CONECT 4308 4305 4309 4312 4313 CONECT 4309 4308 4310 4311 CONECT 4310 4309 CONECT 4311 4309 CONECT 4312 4308 CONECT 4313 4308 CONECT 4314 4315 4316 4317 CONECT 4315 4314 CONECT 4316 4314 CONECT 4317 4314 4318 CONECT 4318 4317 4319 4320 CONECT 4319 4318 CONECT 4320 4318 CONECT 4321 4322 4323 4324 CONECT 4322 4321 CONECT 4323 4321 CONECT 4324 4321 4325 CONECT 4325 4324 4326 4327 CONECT 4326 4325 CONECT 4327 4325 CONECT 4328 4329 4330 CONECT 4329 4328 CONECT 4330 4328 4331 4332 CONECT 4331 4330 CONECT 4332 4330 4333 CONECT 4333 4332 CONECT 4334 4335 4336 4337 CONECT 4335 4334 CONECT 4336 4334 CONECT 4337 4334 4338 CONECT 4338 4337 4339 4340 CONECT 4339 4338 CONECT 4340 4338 CONECT 4341 4342 4343 4344 CONECT 4342 4341 CONECT 4343 4341 CONECT 4344 4341 4345 4348 4349 CONECT 4345 4344 4346 4347 CONECT 4346 4345 CONECT 4347 4345 CONECT 4348 4344 CONECT 4349 4344 CONECT 4350 4351 4352 4353 CONECT 4351 4350 CONECT 4352 4350 CONECT 4353 4350 4354 CONECT 4354 4353 4355 4356 CONECT 4355 4354 CONECT 4356 4354 CONECT 4357 4358 4359 CONECT 4358 4357 CONECT 4359 4357 4360 4361 CONECT 4360 4359 CONECT 4361 4359 4362 CONECT 4362 4361 CONECT 4363 4364 4365 4366 CONECT 4364 4363 CONECT 4365 4363 CONECT 4366 4363 4367 4370 4371 CONECT 4367 4366 4368 4369 CONECT 4368 4367 CONECT 4369 4367 CONECT 4370 4366 CONECT 4371 4366 MASTER 411 0 9 14 41 0 0 6 4551 3 67 45 END