HEADER TRANSFERASE 23-MAY-25 9V4G TITLE PRENYLTRANSFERASE ORD1 WILD TYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRENYLTRANSFERASE; COMPND 3 CHAIN: A, C, D, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DDBJ LC876682 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. KS84; SOURCE 3 ORGANISM_TAXID: 746563; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSFERASE, PRENYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.OSHIRO,S.UEHARA,T.ITO,Y.TANAKA,Y.KODERA,T.MATSUI REVDAT 2 22-OCT-25 9V4G 1 JRNL REVDAT 1 01-OCT-25 9V4G 0 JRNL AUTH T.OSHIRO,S.UEHARA,A.SUTO,Y.TANAKA,T.ITO,Y.KODERA,T.MATSUI JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIP OF AN ALL-ALPHA-HELICAL JRNL TITL 2 PRENYLTRANSFERASE REVEALS THE MECHANISM OF INDOLE JRNL TITL 3 PRENYLATION. JRNL REF BIOCHEMISTRY V. 64 4196 2025 JRNL REFN ISSN 0006-2960 JRNL PMID 40968638 JRNL DOI 10.1021/ACS.BIOCHEM.5C00329 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2.4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 74154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 3795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4000 - 5.6900 0.92 3506 185 0.2073 0.2180 REMARK 3 2 5.6900 - 4.5200 0.93 3530 186 0.2068 0.2101 REMARK 3 3 4.5200 - 3.9500 0.93 3531 186 0.1844 0.2137 REMARK 3 4 3.9500 - 3.5900 0.93 3532 185 0.2099 0.2149 REMARK 3 5 3.5900 - 3.3300 0.93 3581 189 0.2248 0.2787 REMARK 3 6 3.3300 - 3.1300 0.93 3501 184 0.2434 0.2531 REMARK 3 7 3.1300 - 2.9800 0.93 3590 189 0.2562 0.2810 REMARK 3 8 2.9800 - 2.8500 0.93 3542 187 0.2478 0.2941 REMARK 3 9 2.8500 - 2.7400 0.93 3514 185 0.2457 0.2767 REMARK 3 10 2.7400 - 2.6400 0.93 3578 188 0.2628 0.2985 REMARK 3 11 2.6400 - 2.5600 0.93 3505 184 0.2550 0.2669 REMARK 3 12 2.5600 - 2.4900 0.93 3520 186 0.2571 0.2748 REMARK 3 13 2.4900 - 2.4200 0.93 3549 186 0.2699 0.2713 REMARK 3 14 2.4200 - 2.3600 0.93 3509 185 0.2675 0.2685 REMARK 3 15 2.3600 - 2.3100 0.93 3580 189 0.2796 0.3042 REMARK 3 16 2.3100 - 2.2600 0.93 3435 180 0.2819 0.3116 REMARK 3 17 2.2600 - 2.2100 0.92 3564 188 0.2869 0.2799 REMARK 3 18 2.2100 - 2.1700 0.92 3502 184 0.2979 0.3142 REMARK 3 19 2.1700 - 2.1300 0.92 3534 186 0.2926 0.2883 REMARK 3 20 2.1300 - 2.1000 0.89 3343 176 0.3054 0.2998 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.012 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8676 REMARK 3 ANGLE : 0.675 11748 REMARK 3 CHIRALITY : 0.040 1332 REMARK 3 PLANARITY : 0.006 1550 REMARK 3 DIHEDRAL : 13.816 3173 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 5:403) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0071 -6.0428 -78.7938 REMARK 3 T TENSOR REMARK 3 T11: 0.2967 T22: 0.4153 REMARK 3 T33: 0.3220 T12: 0.0000 REMARK 3 T13: -0.0062 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 0.3913 L22: 1.2079 REMARK 3 L33: 0.4283 L12: -0.2917 REMARK 3 L13: -0.0389 L23: -0.2842 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: -0.0160 S13: 0.1856 REMARK 3 S21: -0.0288 S22: -0.0001 S23: 0.1722 REMARK 3 S31: -0.0207 S32: -0.0651 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 8:406) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8404 -32.7386 -54.7188 REMARK 3 T TENSOR REMARK 3 T11: 0.5270 T22: 0.5721 REMARK 3 T33: 0.3411 T12: -0.0100 REMARK 3 T13: -0.0097 T23: 0.1356 REMARK 3 L TENSOR REMARK 3 L11: 0.0307 L22: 1.1534 REMARK 3 L33: 1.9609 L12: -0.0119 REMARK 3 L13: 0.3302 L23: -0.0158 REMARK 3 S TENSOR REMARK 3 S11: 0.1679 S12: -0.1736 S13: -0.1338 REMARK 3 S21: 0.1960 S22: -0.1389 S23: 0.1609 REMARK 3 S31: 0.5847 S32: 0.1298 S33: -0.0005 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 44:330) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3050 -35.5991 -15.4218 REMARK 3 T TENSOR REMARK 3 T11: 0.2842 T22: 0.4228 REMARK 3 T33: 0.3902 T12: -0.0116 REMARK 3 T13: 0.0077 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: -0.0385 L22: 1.0717 REMARK 3 L33: 0.7560 L12: 0.5494 REMARK 3 L13: -0.0957 L23: -0.4259 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: 0.1039 S13: -0.1388 REMARK 3 S21: -0.0200 S22: 0.1248 S23: 0.1811 REMARK 3 S31: 0.1066 S32: -0.1925 S33: 0.0008 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESSEQ 39:403) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0845 -5.6904 -37.2722 REMARK 3 T TENSOR REMARK 3 T11: 0.4624 T22: 0.6659 REMARK 3 T33: 0.3838 T12: -0.0036 REMARK 3 T13: 0.0017 T23: 0.1579 REMARK 3 L TENSOR REMARK 3 L11: 0.2804 L22: 0.3285 REMARK 3 L33: 1.4586 L12: -0.1321 REMARK 3 L13: -0.0711 L23: 0.1288 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: 0.2343 S13: 0.2243 REMARK 3 S21: -0.0699 S22: -0.0536 S23: 0.1153 REMARK 3 S31: -0.3225 S32: 0.0238 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 8 through 90 or REMARK 3 resid 97 through 330)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "C" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 44 through 224 or REMARK 3 resid 240 through 328)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 44 through 90 or REMARK 3 resid 104 through 224 or resid 226 REMARK 3 through 266 or resid 273 through 275 or REMARK 3 resid 277 through 328)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9V4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300059621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: INITIAL PHASE FROM SE-SAD MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS,PH 5.5, 0.2 M AMMONIUM REMARK 280 SULFATE, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ILE A 4 REMARK 465 GLY A 226 REMARK 465 THR A 227 REMARK 465 ARG A 228 REMARK 465 ALA A 229 REMARK 465 GLY A 230 REMARK 465 LYS A 231 REMARK 465 PRO A 232 REMARK 465 ASN A 233 REMARK 465 ILE A 234 REMARK 465 SER A 235 REMARK 465 ASP A 236 REMARK 465 VAL A 237 REMARK 465 ARG A 238 REMARK 465 GLU A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 ILE C 4 REMARK 465 ASP C 5 REMARK 465 VAL C 6 REMARK 465 PRO C 7 REMARK 465 ASP C 91 REMARK 465 ALA C 92 REMARK 465 GLN C 93 REMARK 465 ARG C 94 REMARK 465 ARG C 95 REMARK 465 SER C 96 REMARK 465 GLY C 226 REMARK 465 THR C 227 REMARK 465 ARG C 228 REMARK 465 ALA C 229 REMARK 465 GLY C 230 REMARK 465 LYS C 231 REMARK 465 PRO C 232 REMARK 465 ASN C 233 REMARK 465 ILE C 234 REMARK 465 SER C 235 REMARK 465 ASP C 236 REMARK 465 VAL C 237 REMARK 465 ARG C 238 REMARK 465 GLU C 331 REMARK 465 HIS C 332 REMARK 465 HIS C 333 REMARK 465 HIS C 334 REMARK 465 HIS C 335 REMARK 465 HIS C 336 REMARK 465 HIS C 337 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASP D 3 REMARK 465 ILE D 4 REMARK 465 ASP D 5 REMARK 465 VAL D 6 REMARK 465 PRO D 7 REMARK 465 GLN D 8 REMARK 465 VAL D 9 REMARK 465 ALA D 10 REMARK 465 ASP D 11 REMARK 465 PRO D 12 REMARK 465 GLU D 13 REMARK 465 VAL D 14 REMARK 465 ALA D 15 REMARK 465 ALA D 16 REMARK 465 MET D 17 REMARK 465 VAL D 18 REMARK 465 ARG D 19 REMARK 465 ALA D 20 REMARK 465 GLU D 21 REMARK 465 VAL D 22 REMARK 465 GLU D 23 REMARK 465 GLY D 24 REMARK 465 ARG D 25 REMARK 465 TRP D 26 REMARK 465 PRO D 27 REMARK 465 LEU D 28 REMARK 465 GLY D 29 REMARK 465 VAL D 30 REMARK 465 SER D 31 REMARK 465 GLY D 32 REMARK 465 LEU D 33 REMARK 465 ASP D 34 REMARK 465 GLU D 35 REMARK 465 VAL D 36 REMARK 465 VAL D 37 REMARK 465 ARG D 38 REMARK 465 TYR D 39 REMARK 465 GLY D 40 REMARK 465 LEU D 41 REMARK 465 VAL D 42 REMARK 465 PRO D 43 REMARK 465 ASP D 91 REMARK 465 ALA D 92 REMARK 465 GLN D 93 REMARK 465 ARG D 94 REMARK 465 ARG D 95 REMARK 465 SER D 96 REMARK 465 LYS D 97 REMARK 465 PRO D 98 REMARK 465 ALA D 99 REMARK 465 ALA D 100 REMARK 465 HIS D 101 REMARK 465 THR D 102 REMARK 465 THR D 227 REMARK 465 ARG D 228 REMARK 465 ALA D 229 REMARK 465 GLY D 230 REMARK 465 LYS D 231 REMARK 465 PRO D 232 REMARK 465 ASN D 233 REMARK 465 ILE D 234 REMARK 465 SER D 235 REMARK 465 ASP D 236 REMARK 465 VAL D 237 REMARK 465 ARG D 238 REMARK 465 ASN D 239 REMARK 465 GLY D 240 REMARK 465 VAL D 329 REMARK 465 LEU D 330 REMARK 465 GLU D 331 REMARK 465 HIS D 332 REMARK 465 HIS D 333 REMARK 465 HIS D 334 REMARK 465 HIS D 335 REMARK 465 HIS D 336 REMARK 465 HIS D 337 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ILE B 4 REMARK 465 ASP B 5 REMARK 465 VAL B 6 REMARK 465 PRO B 7 REMARK 465 GLN B 8 REMARK 465 VAL B 9 REMARK 465 ALA B 10 REMARK 465 ASP B 11 REMARK 465 PRO B 12 REMARK 465 GLU B 13 REMARK 465 VAL B 14 REMARK 465 ALA B 15 REMARK 465 ALA B 16 REMARK 465 MET B 17 REMARK 465 VAL B 18 REMARK 465 ARG B 19 REMARK 465 ALA B 20 REMARK 465 GLU B 21 REMARK 465 VAL B 22 REMARK 465 GLU B 23 REMARK 465 GLY B 24 REMARK 465 ARG B 25 REMARK 465 TRP B 26 REMARK 465 PRO B 27 REMARK 465 LEU B 28 REMARK 465 GLY B 29 REMARK 465 VAL B 30 REMARK 465 SER B 31 REMARK 465 GLY B 32 REMARK 465 LEU B 33 REMARK 465 ASP B 34 REMARK 465 GLU B 35 REMARK 465 VAL B 36 REMARK 465 VAL B 37 REMARK 465 ARG B 38 REMARK 465 ASP B 91 REMARK 465 ALA B 92 REMARK 465 GLN B 93 REMARK 465 ARG B 94 REMARK 465 ARG B 95 REMARK 465 SER B 96 REMARK 465 LYS B 97 REMARK 465 PRO B 98 REMARK 465 ALA B 99 REMARK 465 ALA B 100 REMARK 465 HIS B 101 REMARK 465 THR B 102 REMARK 465 VAL B 103 REMARK 465 ASP B 225 REMARK 465 GLY B 226 REMARK 465 THR B 227 REMARK 465 ARG B 228 REMARK 465 ALA B 229 REMARK 465 GLY B 230 REMARK 465 LYS B 231 REMARK 465 PRO B 232 REMARK 465 ASN B 233 REMARK 465 ILE B 234 REMARK 465 SER B 235 REMARK 465 ASP B 236 REMARK 465 VAL B 237 REMARK 465 ARG B 238 REMARK 465 ASP B 267 REMARK 465 THR B 268 REMARK 465 ALA B 269 REMARK 465 ALA B 270 REMARK 465 PRO B 271 REMARK 465 ALA B 272 REMARK 465 TYR B 276 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA D 223 OH TYR D 276 2.06 REMARK 500 OH TYR D 171 OD2 ASP D 220 2.17 REMARK 500 O VAL B 324 N GLY B 326 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 94 1.39 57.77 REMARK 500 ASP C 89 74.52 -153.96 REMARK 500 PRO D 325 72.85 -68.97 REMARK 500 ARG D 327 -70.43 -105.17 REMARK 500 LYS B 46 66.18 67.90 REMARK 500 PRO B 325 75.61 -35.06 REMARK 500 REMARK 500 REMARK: NULL DBREF 9V4G A 1 337 PDB 9V4G 9V4G 1 337 DBREF 9V4G C 1 337 PDB 9V4G 9V4G 1 337 DBREF 9V4G D 1 337 PDB 9V4G 9V4G 1 337 DBREF 9V4G B 1 337 PDB 9V4G 9V4G 1 337 SEQRES 1 A 337 MET THR ASP ILE ASP VAL PRO GLN VAL ALA ASP PRO GLU SEQRES 2 A 337 VAL ALA ALA MET VAL ARG ALA GLU VAL GLU GLY ARG TRP SEQRES 3 A 337 PRO LEU GLY VAL SER GLY LEU ASP GLU VAL VAL ARG TYR SEQRES 4 A 337 GLY LEU VAL PRO PHE GLY LYS MET MET GLY PRO TRP LEU SEQRES 5 A 337 LEU ILE ARG SER ALA LEU ALA VAL GLY GLY ASP ILE ALA SEQRES 6 A 337 THR ALA LEU PRO ALA ALA VAL ALA LEU GLU CYS VAL GLN SEQRES 7 A 337 VAL GLY ALA MET MET HIS ASP ASP ILE ILE ASP CYS ASP SEQRES 8 A 337 ALA GLN ARG ARG SER LYS PRO ALA ALA HIS THR VAL PHE SEQRES 9 A 337 GLY GLU PRO THR ALA ILE VAL GLY GLY ASP GLY LEU PHE SEQRES 10 A 337 PHE HIS GLY PHE ALA ALA LEU SER GLU CYS ARG GLU ALA SEQRES 11 A 337 GLY ALA PRO ALA GLU ARG VAL ALA GLN ALA PHE THR VAL SEQRES 12 A 337 LEU SER ARG ALA GLY LEU ARG ILE GLY SER ALA ALA LEU SEQRES 13 A 337 ARG GLU ILE ARG MET SER ARG GLU ILE CYS SER VAL GLN SEQRES 14 A 337 ASP TYR LEU ASP MET ILE ALA ASP LYS SER GLY ALA LEU SEQRES 15 A 337 LEU TRP MET ALA CYS GLY VAL GLY GLY THR LEU GLY GLY SEQRES 16 A 337 ALA ASP GLU ALA ALA LEU LYS ALA LEU SER GLN TYR SER SEQRES 17 A 337 ASP GLN LEU GLY ILE ALA TYR GLN ILE ARG ASP ASP LEU SEQRES 18 A 337 MET ALA TYR ASP GLY THR ARG ALA GLY LYS PRO ASN ILE SEQRES 19 A 337 SER ASP VAL ARG ASN GLY ARG PRO THR LEU PRO VAL LEU SEQRES 20 A 337 LEU ALA HIS GLU ARG ALA PRO ARG GLU GLN GLN LEU ARG SEQRES 21 A 337 ILE GLU ARG LEU LEU ALA ASP THR ALA ALA PRO ALA ALA SEQRES 22 A 337 GLU ARG TYR LYS ALA MET ALA ASP LEU VAL GLY ALA TYR SEQRES 23 A 337 ASP GLY ALA GLN ALA ALA ARG GLU VAL SER HIS ARG HIS SEQRES 24 A 337 VAL GLN LEU ALA THR ARG ALA LEU GLN THR LEU PRO PRO SEQRES 25 A 337 SER PRO HIS ARG ASP ALA LEU GLU ASP LEU THR VAL PRO SEQRES 26 A 337 GLY ARG LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 337 MET THR ASP ILE ASP VAL PRO GLN VAL ALA ASP PRO GLU SEQRES 2 C 337 VAL ALA ALA MET VAL ARG ALA GLU VAL GLU GLY ARG TRP SEQRES 3 C 337 PRO LEU GLY VAL SER GLY LEU ASP GLU VAL VAL ARG TYR SEQRES 4 C 337 GLY LEU VAL PRO PHE GLY LYS MET MET GLY PRO TRP LEU SEQRES 5 C 337 LEU ILE ARG SER ALA LEU ALA VAL GLY GLY ASP ILE ALA SEQRES 6 C 337 THR ALA LEU PRO ALA ALA VAL ALA LEU GLU CYS VAL GLN SEQRES 7 C 337 VAL GLY ALA MET MET HIS ASP ASP ILE ILE ASP CYS ASP SEQRES 8 C 337 ALA GLN ARG ARG SER LYS PRO ALA ALA HIS THR VAL PHE SEQRES 9 C 337 GLY GLU PRO THR ALA ILE VAL GLY GLY ASP GLY LEU PHE SEQRES 10 C 337 PHE HIS GLY PHE ALA ALA LEU SER GLU CYS ARG GLU ALA SEQRES 11 C 337 GLY ALA PRO ALA GLU ARG VAL ALA GLN ALA PHE THR VAL SEQRES 12 C 337 LEU SER ARG ALA GLY LEU ARG ILE GLY SER ALA ALA LEU SEQRES 13 C 337 ARG GLU ILE ARG MET SER ARG GLU ILE CYS SER VAL GLN SEQRES 14 C 337 ASP TYR LEU ASP MET ILE ALA ASP LYS SER GLY ALA LEU SEQRES 15 C 337 LEU TRP MET ALA CYS GLY VAL GLY GLY THR LEU GLY GLY SEQRES 16 C 337 ALA ASP GLU ALA ALA LEU LYS ALA LEU SER GLN TYR SER SEQRES 17 C 337 ASP GLN LEU GLY ILE ALA TYR GLN ILE ARG ASP ASP LEU SEQRES 18 C 337 MET ALA TYR ASP GLY THR ARG ALA GLY LYS PRO ASN ILE SEQRES 19 C 337 SER ASP VAL ARG ASN GLY ARG PRO THR LEU PRO VAL LEU SEQRES 20 C 337 LEU ALA HIS GLU ARG ALA PRO ARG GLU GLN GLN LEU ARG SEQRES 21 C 337 ILE GLU ARG LEU LEU ALA ASP THR ALA ALA PRO ALA ALA SEQRES 22 C 337 GLU ARG TYR LYS ALA MET ALA ASP LEU VAL GLY ALA TYR SEQRES 23 C 337 ASP GLY ALA GLN ALA ALA ARG GLU VAL SER HIS ARG HIS SEQRES 24 C 337 VAL GLN LEU ALA THR ARG ALA LEU GLN THR LEU PRO PRO SEQRES 25 C 337 SER PRO HIS ARG ASP ALA LEU GLU ASP LEU THR VAL PRO SEQRES 26 C 337 GLY ARG LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 337 MET THR ASP ILE ASP VAL PRO GLN VAL ALA ASP PRO GLU SEQRES 2 D 337 VAL ALA ALA MET VAL ARG ALA GLU VAL GLU GLY ARG TRP SEQRES 3 D 337 PRO LEU GLY VAL SER GLY LEU ASP GLU VAL VAL ARG TYR SEQRES 4 D 337 GLY LEU VAL PRO PHE GLY LYS MET MET GLY PRO TRP LEU SEQRES 5 D 337 LEU ILE ARG SER ALA LEU ALA VAL GLY GLY ASP ILE ALA SEQRES 6 D 337 THR ALA LEU PRO ALA ALA VAL ALA LEU GLU CYS VAL GLN SEQRES 7 D 337 VAL GLY ALA MET MET HIS ASP ASP ILE ILE ASP CYS ASP SEQRES 8 D 337 ALA GLN ARG ARG SER LYS PRO ALA ALA HIS THR VAL PHE SEQRES 9 D 337 GLY GLU PRO THR ALA ILE VAL GLY GLY ASP GLY LEU PHE SEQRES 10 D 337 PHE HIS GLY PHE ALA ALA LEU SER GLU CYS ARG GLU ALA SEQRES 11 D 337 GLY ALA PRO ALA GLU ARG VAL ALA GLN ALA PHE THR VAL SEQRES 12 D 337 LEU SER ARG ALA GLY LEU ARG ILE GLY SER ALA ALA LEU SEQRES 13 D 337 ARG GLU ILE ARG MET SER ARG GLU ILE CYS SER VAL GLN SEQRES 14 D 337 ASP TYR LEU ASP MET ILE ALA ASP LYS SER GLY ALA LEU SEQRES 15 D 337 LEU TRP MET ALA CYS GLY VAL GLY GLY THR LEU GLY GLY SEQRES 16 D 337 ALA ASP GLU ALA ALA LEU LYS ALA LEU SER GLN TYR SER SEQRES 17 D 337 ASP GLN LEU GLY ILE ALA TYR GLN ILE ARG ASP ASP LEU SEQRES 18 D 337 MET ALA TYR ASP GLY THR ARG ALA GLY LYS PRO ASN ILE SEQRES 19 D 337 SER ASP VAL ARG ASN GLY ARG PRO THR LEU PRO VAL LEU SEQRES 20 D 337 LEU ALA HIS GLU ARG ALA PRO ARG GLU GLN GLN LEU ARG SEQRES 21 D 337 ILE GLU ARG LEU LEU ALA ASP THR ALA ALA PRO ALA ALA SEQRES 22 D 337 GLU ARG TYR LYS ALA MET ALA ASP LEU VAL GLY ALA TYR SEQRES 23 D 337 ASP GLY ALA GLN ALA ALA ARG GLU VAL SER HIS ARG HIS SEQRES 24 D 337 VAL GLN LEU ALA THR ARG ALA LEU GLN THR LEU PRO PRO SEQRES 25 D 337 SER PRO HIS ARG ASP ALA LEU GLU ASP LEU THR VAL PRO SEQRES 26 D 337 GLY ARG LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 337 MET THR ASP ILE ASP VAL PRO GLN VAL ALA ASP PRO GLU SEQRES 2 B 337 VAL ALA ALA MET VAL ARG ALA GLU VAL GLU GLY ARG TRP SEQRES 3 B 337 PRO LEU GLY VAL SER GLY LEU ASP GLU VAL VAL ARG TYR SEQRES 4 B 337 GLY LEU VAL PRO PHE GLY LYS MET MET GLY PRO TRP LEU SEQRES 5 B 337 LEU ILE ARG SER ALA LEU ALA VAL GLY GLY ASP ILE ALA SEQRES 6 B 337 THR ALA LEU PRO ALA ALA VAL ALA LEU GLU CYS VAL GLN SEQRES 7 B 337 VAL GLY ALA MET MET HIS ASP ASP ILE ILE ASP CYS ASP SEQRES 8 B 337 ALA GLN ARG ARG SER LYS PRO ALA ALA HIS THR VAL PHE SEQRES 9 B 337 GLY GLU PRO THR ALA ILE VAL GLY GLY ASP GLY LEU PHE SEQRES 10 B 337 PHE HIS GLY PHE ALA ALA LEU SER GLU CYS ARG GLU ALA SEQRES 11 B 337 GLY ALA PRO ALA GLU ARG VAL ALA GLN ALA PHE THR VAL SEQRES 12 B 337 LEU SER ARG ALA GLY LEU ARG ILE GLY SER ALA ALA LEU SEQRES 13 B 337 ARG GLU ILE ARG MET SER ARG GLU ILE CYS SER VAL GLN SEQRES 14 B 337 ASP TYR LEU ASP MET ILE ALA ASP LYS SER GLY ALA LEU SEQRES 15 B 337 LEU TRP MET ALA CYS GLY VAL GLY GLY THR LEU GLY GLY SEQRES 16 B 337 ALA ASP GLU ALA ALA LEU LYS ALA LEU SER GLN TYR SER SEQRES 17 B 337 ASP GLN LEU GLY ILE ALA TYR GLN ILE ARG ASP ASP LEU SEQRES 18 B 337 MET ALA TYR ASP GLY THR ARG ALA GLY LYS PRO ASN ILE SEQRES 19 B 337 SER ASP VAL ARG ASN GLY ARG PRO THR LEU PRO VAL LEU SEQRES 20 B 337 LEU ALA HIS GLU ARG ALA PRO ARG GLU GLN GLN LEU ARG SEQRES 21 B 337 ILE GLU ARG LEU LEU ALA ASP THR ALA ALA PRO ALA ALA SEQRES 22 B 337 GLU ARG TYR LYS ALA MET ALA ASP LEU VAL GLY ALA TYR SEQRES 23 B 337 ASP GLY ALA GLN ALA ALA ARG GLU VAL SER HIS ARG HIS SEQRES 24 B 337 VAL GLN LEU ALA THR ARG ALA LEU GLN THR LEU PRO PRO SEQRES 25 B 337 SER PRO HIS ARG ASP ALA LEU GLU ASP LEU THR VAL PRO SEQRES 26 B 337 GLY ARG LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 C 401 5 HET EDO C 402 4 HET EDO C 403 4 HET EDO C 404 4 HET EDO B 401 4 HET EDO B 402 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 EDO 5(C2 H6 O2) FORMUL 13 HOH *173(H2 O) HELIX 1 AA1 GLU A 13 TRP A 26 1 14 HELIX 2 AA2 GLY A 32 VAL A 42 1 11 HELIX 3 AA3 MET A 47 VAL A 60 1 14 HELIX 4 AA4 ASP A 63 ASP A 89 1 27 HELIX 5 AA5 ALA A 99 GLY A 105 1 7 HELIX 6 AA6 GLY A 105 GLU A 126 1 22 HELIX 7 AA7 GLU A 126 GLY A 131 1 6 HELIX 8 AA8 PRO A 133 SER A 162 1 30 HELIX 9 AA9 SER A 167 SER A 179 1 13 HELIX 10 AB1 SER A 179 GLY A 195 1 17 HELIX 11 AB2 ASP A 197 LEU A 221 1 25 HELIX 12 AB3 MET A 222 ASP A 225 5 4 HELIX 13 AB4 THR A 243 ALA A 253 1 11 HELIX 14 AB5 PRO A 254 ASP A 267 1 14 HELIX 15 AB6 PRO A 271 TYR A 286 1 16 HELIX 16 AB7 ASP A 287 GLN A 308 1 22 HELIX 17 AB8 SER A 313 LEU A 322 1 10 HELIX 18 AB9 GLU C 13 TRP C 26 1 14 HELIX 19 AC1 GLY C 32 VAL C 42 1 11 HELIX 20 AC2 MET C 47 VAL C 60 1 14 HELIX 21 AC3 ASP C 63 ASP C 89 1 27 HELIX 22 AC4 ALA C 99 GLY C 105 1 7 HELIX 23 AC5 GLY C 105 GLU C 126 1 22 HELIX 24 AC6 GLU C 126 GLY C 131 1 6 HELIX 25 AC7 PRO C 133 SER C 162 1 30 HELIX 26 AC8 SER C 167 SER C 179 1 13 HELIX 27 AC9 SER C 179 GLY C 195 1 17 HELIX 28 AD1 ASP C 197 TYR C 224 1 28 HELIX 29 AD2 THR C 243 ALA C 253 1 11 HELIX 30 AD3 PRO C 254 ASP C 267 1 14 HELIX 31 AD4 PRO C 271 TYR C 286 1 16 HELIX 32 AD5 ASP C 287 GLN C 308 1 22 HELIX 33 AD6 SER C 313 LEU C 322 1 10 HELIX 34 AD7 MET D 48 VAL D 60 1 13 HELIX 35 AD8 ASP D 63 ASP D 89 1 27 HELIX 36 AD9 GLY D 105 GLY D 131 1 27 HELIX 37 AE1 PRO D 133 SER D 162 1 30 HELIX 38 AE2 SER D 167 SER D 179 1 13 HELIX 39 AE3 SER D 179 GLY D 195 1 17 HELIX 40 AE4 ASP D 197 TYR D 224 1 28 HELIX 41 AE5 THR D 243 ALA D 253 1 11 HELIX 42 AE6 PRO D 254 ASP D 267 1 14 HELIX 43 AE7 PRO D 271 TYR D 286 1 16 HELIX 44 AE8 ASP D 287 GLN D 308 1 22 HELIX 45 AE9 SER D 313 LEU D 322 1 10 HELIX 46 AF1 MET B 48 VAL B 60 1 13 HELIX 47 AF2 ASP B 63 ASP B 89 1 27 HELIX 48 AF3 GLY B 105 GLY B 131 1 27 HELIX 49 AF4 PRO B 133 SER B 162 1 30 HELIX 50 AF5 SER B 167 SER B 179 1 13 HELIX 51 AF6 SER B 179 GLY B 195 1 17 HELIX 52 AF7 ASP B 197 LEU B 221 1 25 HELIX 53 AF8 MET B 222 TYR B 224 5 3 HELIX 54 AF9 THR B 243 ALA B 253 1 11 HELIX 55 AG1 PRO B 254 ALA B 266 1 13 HELIX 56 AG2 GLU B 274 ARG B 275 5 2 HELIX 57 AG3 LYS B 277 LYS B 277 5 1 HELIX 58 AG4 ALA B 278 TYR B 286 1 9 HELIX 59 AG5 ASP B 287 GLN B 308 1 22 HELIX 60 AG6 SER B 313 LEU B 322 1 10 HELIX 61 AG7 LEU B 328 HIS B 334 1 7 CISPEP 1 VAL A 42 PRO A 43 0 -2.80 CISPEP 2 VAL C 42 PRO C 43 0 -3.09 CRYST1 59.000 72.210 84.190 86.04 69.50 90.02 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016949 0.000006 -0.006355 0.00000 SCALE2 0.000000 0.013848 -0.001026 0.00000 SCALE3 0.000000 0.000000 0.012716 0.00000 MTRIX1 1 0.999980 -0.000967 0.006300 0.57188 1 MTRIX2 1 -0.000964 -0.999999 -0.000435 -39.27191 1 MTRIX3 1 0.006301 0.000429 -0.999980 -92.77287 1 MTRIX1 2 0.997477 0.070573 0.007688 2.09901 1 MTRIX2 2 0.070570 -0.997507 0.000678 -36.65178 1 MTRIX3 2 0.007717 -0.000134 -0.999970 -92.32606 1 CONECT 8511 8512 8513 8514 8515 CONECT 8512 8511 CONECT 8513 8511 CONECT 8514 8511 CONECT 8515 8511 CONECT 8516 8517 8518 8519 8520 CONECT 8517 8516 CONECT 8518 8516 CONECT 8519 8516 CONECT 8520 8516 CONECT 8521 8522 8523 8524 8525 CONECT 8522 8521 CONECT 8523 8521 CONECT 8524 8521 CONECT 8525 8521 CONECT 8526 8527 8528 CONECT 8527 8526 CONECT 8528 8526 8529 CONECT 8529 8528 CONECT 8530 8531 8532 CONECT 8531 8530 CONECT 8532 8530 8533 CONECT 8533 8532 CONECT 8534 8535 8536 CONECT 8535 8534 CONECT 8536 8534 8537 CONECT 8537 8536 CONECT 8538 8539 8540 CONECT 8539 8538 CONECT 8540 8538 8541 CONECT 8541 8540 CONECT 8542 8543 8544 CONECT 8543 8542 CONECT 8544 8542 8545 CONECT 8545 8544 MASTER 541 0 8 61 0 0 0 12 8714 4 35 104 END