HEADER TRANSFERASE 23-MAY-25 9V4H TITLE PRENYLTRANSFERASE ORD1 Q216A-FSPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRENYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DDBJ LC876682 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. KS84; SOURCE 3 ORGANISM_TAXID: 746563; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSFERASE, PRENYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.OSHIRO,S.UEHARA,T.ITO,Y.TANAKA,Y.KODERA,T.MATSUI REVDAT 2 22-OCT-25 9V4H 1 JRNL REVDAT 1 01-OCT-25 9V4H 0 JRNL AUTH T.OSHIRO,S.UEHARA,A.SUTO,Y.TANAKA,T.ITO,Y.KODERA,T.MATSUI JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIP OF AN ALL-ALPHA-HELICAL JRNL TITL 2 PRENYLTRANSFERASE REVEALS THE MECHANISM OF INDOLE JRNL TITL 3 PRENYLATION. JRNL REF BIOCHEMISTRY V. 64 4196 2025 JRNL REFN ISSN 0006-2960 JRNL PMID 40968638 JRNL DOI 10.1021/ACS.BIOCHEM.5C00329 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2.4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 64136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2600 - 5.9700 0.93 3042 161 0.2063 0.2213 REMARK 3 2 5.9600 - 4.7400 0.94 3109 163 0.2320 0.2572 REMARK 3 3 4.7400 - 4.1400 0.94 3087 163 0.1896 0.2021 REMARK 3 4 4.1400 - 3.7600 0.94 3075 162 0.2061 0.2139 REMARK 3 5 3.7600 - 3.4900 0.94 3048 160 0.2225 0.2293 REMARK 3 6 3.4900 - 3.2800 0.94 3055 161 0.2438 0.2624 REMARK 3 7 3.2800 - 3.1200 0.93 3052 160 0.2592 0.2815 REMARK 3 8 3.1200 - 2.9800 0.93 3051 161 0.2571 0.2940 REMARK 3 9 2.9800 - 2.8700 0.93 3077 162 0.2493 0.2803 REMARK 3 10 2.8700 - 2.7700 0.93 3035 160 0.2565 0.2789 REMARK 3 11 2.7700 - 2.6800 0.94 3056 160 0.2722 0.2946 REMARK 3 12 2.6800 - 2.6100 0.93 3011 159 0.2793 0.2999 REMARK 3 13 2.6100 - 2.5400 0.93 3018 159 0.2755 0.3008 REMARK 3 14 2.5400 - 2.4800 0.93 3036 160 0.2733 0.3156 REMARK 3 15 2.4800 - 2.4200 0.92 3047 160 0.2880 0.2887 REMARK 3 16 2.4200 - 2.3700 0.93 3077 162 0.2905 0.3127 REMARK 3 17 2.3700 - 2.3200 0.92 2979 157 0.2926 0.2896 REMARK 3 18 2.3200 - 2.2800 0.93 2994 157 0.2892 0.3257 REMARK 3 19 2.2800 - 2.2400 0.92 3065 162 0.3025 0.3064 REMARK 3 20 2.2400 - 2.2000 0.92 3015 158 0.3061 0.3075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.857 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: H,-K,H-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8531 REMARK 3 ANGLE : 0.646 11562 REMARK 3 CHIRALITY : 0.039 1318 REMARK 3 PLANARITY : 0.005 1526 REMARK 3 DIHEDRAL : 14.070 3139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -28.6443 -19.1299 -46.2520 REMARK 3 T TENSOR REMARK 3 T11: 0.3056 T22: 0.4970 REMARK 3 T33: 0.3671 T12: 0.0101 REMARK 3 T13: -0.0130 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.0082 L22: 0.1728 REMARK 3 L33: 1.2644 L12: 0.0316 REMARK 3 L13: -0.0521 L23: -0.3666 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: 0.0020 S13: 0.0098 REMARK 3 S21: -0.0199 S22: 0.0018 S23: 0.0543 REMARK 3 S31: 0.0384 S32: -0.0509 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 7 through 89 or REMARK 3 resid 96 through 325)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and resid 7 through 325) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 45 through 252 or REMARK 3 resid 254 through 281 or resid 288 REMARK 3 through 331)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 45 through 224 or REMARK 3 resid 239 through 331)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9V4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300059764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.045000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64136 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 9V4G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, PH 5.5, 0.24 M LITHIUM REMARK 280 SULFATE, 15% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ILE A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 6 REMARK 465 GLY A 226 REMARK 465 THR A 227 REMARK 465 ARG A 228 REMARK 465 ALA A 229 REMARK 465 GLY A 230 REMARK 465 LYS A 231 REMARK 465 PRO A 232 REMARK 465 ASN A 233 REMARK 465 ILE A 234 REMARK 465 SER A 235 REMARK 465 ASP A 236 REMARK 465 VAL A 237 REMARK 465 ARG A 238 REMARK 465 GLY A 326 REMARK 465 ARG A 327 REMARK 465 LEU A 328 REMARK 465 VAL A 329 REMARK 465 LEU A 330 REMARK 465 GLU A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ILE B 4 REMARK 465 CYS B 90 REMARK 465 ASP B 91 REMARK 465 ALA B 92 REMARK 465 GLN B 93 REMARK 465 ARG B 94 REMARK 465 ARG B 95 REMARK 465 GLY B 226 REMARK 465 THR B 227 REMARK 465 ARG B 228 REMARK 465 ALA B 229 REMARK 465 GLY B 230 REMARK 465 LYS B 231 REMARK 465 PRO B 232 REMARK 465 ASN B 233 REMARK 465 ILE B 234 REMARK 465 SER B 235 REMARK 465 ASP B 236 REMARK 465 VAL B 237 REMARK 465 ARG B 238 REMARK 465 GLY B 326 REMARK 465 ARG B 327 REMARK 465 LEU B 328 REMARK 465 VAL B 329 REMARK 465 LEU B 330 REMARK 465 GLU B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 ASP C 3 REMARK 465 ILE C 4 REMARK 465 ASP C 5 REMARK 465 VAL C 6 REMARK 465 PRO C 7 REMARK 465 GLN C 8 REMARK 465 VAL C 9 REMARK 465 ALA C 10 REMARK 465 ASP C 11 REMARK 465 PRO C 12 REMARK 465 GLU C 13 REMARK 465 VAL C 14 REMARK 465 ALA C 15 REMARK 465 ALA C 16 REMARK 465 MET C 17 REMARK 465 VAL C 18 REMARK 465 ARG C 19 REMARK 465 ALA C 20 REMARK 465 GLU C 21 REMARK 465 VAL C 22 REMARK 465 GLU C 23 REMARK 465 GLY C 24 REMARK 465 ARG C 25 REMARK 465 TRP C 26 REMARK 465 PRO C 27 REMARK 465 LEU C 28 REMARK 465 GLY C 29 REMARK 465 VAL C 30 REMARK 465 SER C 31 REMARK 465 GLY C 32 REMARK 465 LEU C 33 REMARK 465 ASP C 34 REMARK 465 GLU C 35 REMARK 465 VAL C 36 REMARK 465 VAL C 37 REMARK 465 ARG C 38 REMARK 465 TYR C 39 REMARK 465 GLY C 40 REMARK 465 ASP C 91 REMARK 465 ALA C 92 REMARK 465 GLN C 93 REMARK 465 ARG C 94 REMARK 465 ARG C 95 REMARK 465 SER C 96 REMARK 465 LYS C 97 REMARK 465 PRO C 98 REMARK 465 ALA C 99 REMARK 465 ALA C 100 REMARK 465 HIS C 101 REMARK 465 THR C 102 REMARK 465 VAL C 103 REMARK 465 PHE C 104 REMARK 465 ASP C 225 REMARK 465 GLY C 226 REMARK 465 THR C 227 REMARK 465 ARG C 228 REMARK 465 ALA C 229 REMARK 465 GLY C 230 REMARK 465 LYS C 231 REMARK 465 PRO C 232 REMARK 465 ASN C 233 REMARK 465 ILE C 234 REMARK 465 SER C 235 REMARK 465 ASP C 236 REMARK 465 VAL C 237 REMARK 465 ARG C 238 REMARK 465 GLY C 284 REMARK 465 ALA C 285 REMARK 465 TYR C 286 REMARK 465 ASP C 287 REMARK 465 HIS C 332 REMARK 465 HIS C 333 REMARK 465 HIS C 334 REMARK 465 HIS C 335 REMARK 465 HIS C 336 REMARK 465 HIS C 337 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ASP D 3 REMARK 465 ILE D 4 REMARK 465 ASP D 5 REMARK 465 VAL D 6 REMARK 465 PRO D 7 REMARK 465 GLN D 8 REMARK 465 VAL D 9 REMARK 465 ALA D 10 REMARK 465 ASP D 11 REMARK 465 PRO D 12 REMARK 465 GLU D 13 REMARK 465 VAL D 14 REMARK 465 ALA D 15 REMARK 465 ALA D 16 REMARK 465 MET D 17 REMARK 465 VAL D 18 REMARK 465 ARG D 19 REMARK 465 ALA D 20 REMARK 465 GLU D 21 REMARK 465 VAL D 22 REMARK 465 GLU D 23 REMARK 465 GLY D 24 REMARK 465 ARG D 25 REMARK 465 TRP D 26 REMARK 465 PRO D 27 REMARK 465 LEU D 28 REMARK 465 GLY D 29 REMARK 465 VAL D 30 REMARK 465 SER D 31 REMARK 465 GLY D 32 REMARK 465 LEU D 33 REMARK 465 ASP D 34 REMARK 465 GLU D 35 REMARK 465 VAL D 36 REMARK 465 VAL D 37 REMARK 465 ARG D 38 REMARK 465 TYR D 39 REMARK 465 GLY D 40 REMARK 465 LEU D 41 REMARK 465 VAL D 42 REMARK 465 PRO D 43 REMARK 465 PHE D 44 REMARK 465 ASP D 91 REMARK 465 ALA D 92 REMARK 465 GLN D 93 REMARK 465 ARG D 94 REMARK 465 ARG D 95 REMARK 465 SER D 96 REMARK 465 LYS D 97 REMARK 465 PRO D 98 REMARK 465 ALA D 99 REMARK 465 ALA D 100 REMARK 465 HIS D 101 REMARK 465 THR D 102 REMARK 465 VAL D 103 REMARK 465 PHE D 104 REMARK 465 GLY D 226 REMARK 465 THR D 227 REMARK 465 ARG D 228 REMARK 465 ALA D 229 REMARK 465 GLY D 230 REMARK 465 LYS D 231 REMARK 465 PRO D 232 REMARK 465 ASN D 233 REMARK 465 ILE D 234 REMARK 465 SER D 235 REMARK 465 ASP D 236 REMARK 465 VAL D 237 REMARK 465 ARG D 238 REMARK 465 ALA D 253 REMARK 465 LEU D 282 REMARK 465 VAL D 283 REMARK 465 GLY D 284 REMARK 465 ALA D 285 REMARK 465 TYR D 286 REMARK 465 ASP D 287 REMARK 465 HIS D 333 REMARK 465 HIS D 334 REMARK 465 HIS D 335 REMARK 465 HIS D 336 REMARK 465 HIS D 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO C 325 109.49 -51.20 REMARK 500 ARG C 327 -174.58 -65.32 REMARK 500 LEU D 330 34.67 70.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 85 OD1 REMARK 620 2 ASP D 85 OD2 49.3 REMARK 620 3 FPS D 402 O2B 128.5 92.0 REMARK 620 N 1 2 DBREF 9V4H A 1 337 PDB 9V4H 9V4H 1 337 DBREF 9V4H B 1 337 PDB 9V4H 9V4H 1 337 DBREF 9V4H C 1 337 PDB 9V4H 9V4H 1 337 DBREF 9V4H D 1 337 PDB 9V4H 9V4H 1 337 SEQRES 1 A 337 MET THR ASP ILE ASP VAL PRO GLN VAL ALA ASP PRO GLU SEQRES 2 A 337 VAL ALA ALA MET VAL ARG ALA GLU VAL GLU GLY ARG TRP SEQRES 3 A 337 PRO LEU GLY VAL SER GLY LEU ASP GLU VAL VAL ARG TYR SEQRES 4 A 337 GLY LEU VAL PRO PHE GLY LYS MET MET GLY PRO TRP LEU SEQRES 5 A 337 LEU ILE ARG SER ALA LEU ALA VAL GLY GLY ASP ILE ALA SEQRES 6 A 337 THR ALA LEU PRO ALA ALA VAL ALA LEU GLU CYS VAL GLN SEQRES 7 A 337 VAL GLY ALA MET MET HIS ASP ASP ILE ILE ASP CYS ASP SEQRES 8 A 337 ALA GLN ARG ARG SER LYS PRO ALA ALA HIS THR VAL PHE SEQRES 9 A 337 GLY GLU PRO THR ALA ILE VAL GLY GLY ASP GLY LEU PHE SEQRES 10 A 337 PHE HIS GLY PHE ALA ALA LEU SER GLU CYS ARG GLU ALA SEQRES 11 A 337 GLY ALA PRO ALA GLU ARG VAL ALA GLN ALA PHE THR VAL SEQRES 12 A 337 LEU SER ARG ALA GLY LEU ARG ILE GLY SER ALA ALA LEU SEQRES 13 A 337 ARG GLU ILE ARG MET SER ARG GLU ILE CYS SER VAL GLN SEQRES 14 A 337 ASP TYR LEU ASP MET ILE ALA ASP LYS SER GLY ALA LEU SEQRES 15 A 337 LEU TRP MET ALA CYS GLY VAL GLY GLY THR LEU GLY GLY SEQRES 16 A 337 ALA ASP GLU ALA ALA LEU LYS ALA LEU SER GLN TYR SER SEQRES 17 A 337 ASP GLN LEU GLY ILE ALA TYR ALA ILE ARG ASP ASP LEU SEQRES 18 A 337 MET ALA TYR ASP GLY THR ARG ALA GLY LYS PRO ASN ILE SEQRES 19 A 337 SER ASP VAL ARG ASN GLY ARG PRO THR LEU PRO VAL LEU SEQRES 20 A 337 LEU ALA HIS GLU ARG ALA PRO ARG GLU GLN GLN LEU ARG SEQRES 21 A 337 ILE GLU ARG LEU LEU ALA ASP THR ALA ALA PRO ALA ALA SEQRES 22 A 337 GLU ARG TYR LYS ALA MET ALA ASP LEU VAL GLY ALA TYR SEQRES 23 A 337 ASP GLY ALA GLN ALA ALA ARG GLU VAL SER HIS ARG HIS SEQRES 24 A 337 VAL GLN LEU ALA THR ARG ALA LEU GLN THR LEU PRO PRO SEQRES 25 A 337 SER PRO HIS ARG ASP ALA LEU GLU ASP LEU THR VAL PRO SEQRES 26 A 337 GLY ARG LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 337 MET THR ASP ILE ASP VAL PRO GLN VAL ALA ASP PRO GLU SEQRES 2 B 337 VAL ALA ALA MET VAL ARG ALA GLU VAL GLU GLY ARG TRP SEQRES 3 B 337 PRO LEU GLY VAL SER GLY LEU ASP GLU VAL VAL ARG TYR SEQRES 4 B 337 GLY LEU VAL PRO PHE GLY LYS MET MET GLY PRO TRP LEU SEQRES 5 B 337 LEU ILE ARG SER ALA LEU ALA VAL GLY GLY ASP ILE ALA SEQRES 6 B 337 THR ALA LEU PRO ALA ALA VAL ALA LEU GLU CYS VAL GLN SEQRES 7 B 337 VAL GLY ALA MET MET HIS ASP ASP ILE ILE ASP CYS ASP SEQRES 8 B 337 ALA GLN ARG ARG SER LYS PRO ALA ALA HIS THR VAL PHE SEQRES 9 B 337 GLY GLU PRO THR ALA ILE VAL GLY GLY ASP GLY LEU PHE SEQRES 10 B 337 PHE HIS GLY PHE ALA ALA LEU SER GLU CYS ARG GLU ALA SEQRES 11 B 337 GLY ALA PRO ALA GLU ARG VAL ALA GLN ALA PHE THR VAL SEQRES 12 B 337 LEU SER ARG ALA GLY LEU ARG ILE GLY SER ALA ALA LEU SEQRES 13 B 337 ARG GLU ILE ARG MET SER ARG GLU ILE CYS SER VAL GLN SEQRES 14 B 337 ASP TYR LEU ASP MET ILE ALA ASP LYS SER GLY ALA LEU SEQRES 15 B 337 LEU TRP MET ALA CYS GLY VAL GLY GLY THR LEU GLY GLY SEQRES 16 B 337 ALA ASP GLU ALA ALA LEU LYS ALA LEU SER GLN TYR SER SEQRES 17 B 337 ASP GLN LEU GLY ILE ALA TYR ALA ILE ARG ASP ASP LEU SEQRES 18 B 337 MET ALA TYR ASP GLY THR ARG ALA GLY LYS PRO ASN ILE SEQRES 19 B 337 SER ASP VAL ARG ASN GLY ARG PRO THR LEU PRO VAL LEU SEQRES 20 B 337 LEU ALA HIS GLU ARG ALA PRO ARG GLU GLN GLN LEU ARG SEQRES 21 B 337 ILE GLU ARG LEU LEU ALA ASP THR ALA ALA PRO ALA ALA SEQRES 22 B 337 GLU ARG TYR LYS ALA MET ALA ASP LEU VAL GLY ALA TYR SEQRES 23 B 337 ASP GLY ALA GLN ALA ALA ARG GLU VAL SER HIS ARG HIS SEQRES 24 B 337 VAL GLN LEU ALA THR ARG ALA LEU GLN THR LEU PRO PRO SEQRES 25 B 337 SER PRO HIS ARG ASP ALA LEU GLU ASP LEU THR VAL PRO SEQRES 26 B 337 GLY ARG LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 337 MET THR ASP ILE ASP VAL PRO GLN VAL ALA ASP PRO GLU SEQRES 2 C 337 VAL ALA ALA MET VAL ARG ALA GLU VAL GLU GLY ARG TRP SEQRES 3 C 337 PRO LEU GLY VAL SER GLY LEU ASP GLU VAL VAL ARG TYR SEQRES 4 C 337 GLY LEU VAL PRO PHE GLY LYS MET MET GLY PRO TRP LEU SEQRES 5 C 337 LEU ILE ARG SER ALA LEU ALA VAL GLY GLY ASP ILE ALA SEQRES 6 C 337 THR ALA LEU PRO ALA ALA VAL ALA LEU GLU CYS VAL GLN SEQRES 7 C 337 VAL GLY ALA MET MET HIS ASP ASP ILE ILE ASP CYS ASP SEQRES 8 C 337 ALA GLN ARG ARG SER LYS PRO ALA ALA HIS THR VAL PHE SEQRES 9 C 337 GLY GLU PRO THR ALA ILE VAL GLY GLY ASP GLY LEU PHE SEQRES 10 C 337 PHE HIS GLY PHE ALA ALA LEU SER GLU CYS ARG GLU ALA SEQRES 11 C 337 GLY ALA PRO ALA GLU ARG VAL ALA GLN ALA PHE THR VAL SEQRES 12 C 337 LEU SER ARG ALA GLY LEU ARG ILE GLY SER ALA ALA LEU SEQRES 13 C 337 ARG GLU ILE ARG MET SER ARG GLU ILE CYS SER VAL GLN SEQRES 14 C 337 ASP TYR LEU ASP MET ILE ALA ASP LYS SER GLY ALA LEU SEQRES 15 C 337 LEU TRP MET ALA CYS GLY VAL GLY GLY THR LEU GLY GLY SEQRES 16 C 337 ALA ASP GLU ALA ALA LEU LYS ALA LEU SER GLN TYR SER SEQRES 17 C 337 ASP GLN LEU GLY ILE ALA TYR ALA ILE ARG ASP ASP LEU SEQRES 18 C 337 MET ALA TYR ASP GLY THR ARG ALA GLY LYS PRO ASN ILE SEQRES 19 C 337 SER ASP VAL ARG ASN GLY ARG PRO THR LEU PRO VAL LEU SEQRES 20 C 337 LEU ALA HIS GLU ARG ALA PRO ARG GLU GLN GLN LEU ARG SEQRES 21 C 337 ILE GLU ARG LEU LEU ALA ASP THR ALA ALA PRO ALA ALA SEQRES 22 C 337 GLU ARG TYR LYS ALA MET ALA ASP LEU VAL GLY ALA TYR SEQRES 23 C 337 ASP GLY ALA GLN ALA ALA ARG GLU VAL SER HIS ARG HIS SEQRES 24 C 337 VAL GLN LEU ALA THR ARG ALA LEU GLN THR LEU PRO PRO SEQRES 25 C 337 SER PRO HIS ARG ASP ALA LEU GLU ASP LEU THR VAL PRO SEQRES 26 C 337 GLY ARG LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 337 MET THR ASP ILE ASP VAL PRO GLN VAL ALA ASP PRO GLU SEQRES 2 D 337 VAL ALA ALA MET VAL ARG ALA GLU VAL GLU GLY ARG TRP SEQRES 3 D 337 PRO LEU GLY VAL SER GLY LEU ASP GLU VAL VAL ARG TYR SEQRES 4 D 337 GLY LEU VAL PRO PHE GLY LYS MET MET GLY PRO TRP LEU SEQRES 5 D 337 LEU ILE ARG SER ALA LEU ALA VAL GLY GLY ASP ILE ALA SEQRES 6 D 337 THR ALA LEU PRO ALA ALA VAL ALA LEU GLU CYS VAL GLN SEQRES 7 D 337 VAL GLY ALA MET MET HIS ASP ASP ILE ILE ASP CYS ASP SEQRES 8 D 337 ALA GLN ARG ARG SER LYS PRO ALA ALA HIS THR VAL PHE SEQRES 9 D 337 GLY GLU PRO THR ALA ILE VAL GLY GLY ASP GLY LEU PHE SEQRES 10 D 337 PHE HIS GLY PHE ALA ALA LEU SER GLU CYS ARG GLU ALA SEQRES 11 D 337 GLY ALA PRO ALA GLU ARG VAL ALA GLN ALA PHE THR VAL SEQRES 12 D 337 LEU SER ARG ALA GLY LEU ARG ILE GLY SER ALA ALA LEU SEQRES 13 D 337 ARG GLU ILE ARG MET SER ARG GLU ILE CYS SER VAL GLN SEQRES 14 D 337 ASP TYR LEU ASP MET ILE ALA ASP LYS SER GLY ALA LEU SEQRES 15 D 337 LEU TRP MET ALA CYS GLY VAL GLY GLY THR LEU GLY GLY SEQRES 16 D 337 ALA ASP GLU ALA ALA LEU LYS ALA LEU SER GLN TYR SER SEQRES 17 D 337 ASP GLN LEU GLY ILE ALA TYR ALA ILE ARG ASP ASP LEU SEQRES 18 D 337 MET ALA TYR ASP GLY THR ARG ALA GLY LYS PRO ASN ILE SEQRES 19 D 337 SER ASP VAL ARG ASN GLY ARG PRO THR LEU PRO VAL LEU SEQRES 20 D 337 LEU ALA HIS GLU ARG ALA PRO ARG GLU GLN GLN LEU ARG SEQRES 21 D 337 ILE GLU ARG LEU LEU ALA ASP THR ALA ALA PRO ALA ALA SEQRES 22 D 337 GLU ARG TYR LYS ALA MET ALA ASP LEU VAL GLY ALA TYR SEQRES 23 D 337 ASP GLY ALA GLN ALA ALA ARG GLU VAL SER HIS ARG HIS SEQRES 24 D 337 VAL GLN LEU ALA THR ARG ALA LEU GLN THR LEU PRO PRO SEQRES 25 D 337 SER PRO HIS ARG ASP ALA LEU GLU ASP LEU THR VAL PRO SEQRES 26 D 337 GLY ARG LEU VAL LEU GLU HIS HIS HIS HIS HIS HIS HET FPS C 401 24 HET MG D 401 1 HET FPS D 402 24 HETNAM FPS S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] HETNAM 2 FPS TRIHYDROGEN THIODIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN FPS FARNESYL THIOPYROPHOSPHATE FORMUL 5 FPS 2(C15 H28 O6 P2 S) FORMUL 6 MG MG 2+ FORMUL 8 HOH *53(H2 O) HELIX 1 AA1 GLU A 13 TRP A 26 1 14 HELIX 2 AA2 SER A 31 VAL A 42 1 12 HELIX 3 AA3 MET A 47 VAL A 60 1 14 HELIX 4 AA4 ASP A 63 ASP A 89 1 27 HELIX 5 AA5 ALA A 99 GLY A 105 1 7 HELIX 6 AA6 GLY A 105 ALA A 130 1 26 HELIX 7 AA7 PRO A 133 MET A 161 1 29 HELIX 8 AA8 SER A 167 GLY A 195 1 29 HELIX 9 AA9 ASP A 197 MET A 222 1 26 HELIX 10 AB1 THR A 243 ALA A 253 1 11 HELIX 11 AB2 PRO A 254 ASP A 267 1 14 HELIX 12 AB3 PRO A 271 TYR A 286 1 16 HELIX 13 AB4 ASP A 287 GLN A 308 1 22 HELIX 14 AB5 SER A 313 LEU A 322 1 10 HELIX 15 AB6 GLU B 13 TRP B 26 1 14 HELIX 16 AB7 SER B 31 VAL B 42 1 12 HELIX 17 AB8 MET B 47 VAL B 60 1 14 HELIX 18 AB9 ASP B 63 ASP B 89 1 27 HELIX 19 AC1 ALA B 99 GLY B 105 1 7 HELIX 20 AC2 GLY B 105 GLU B 126 1 22 HELIX 21 AC3 PRO B 133 MET B 161 1 29 HELIX 22 AC4 SER B 167 GLY B 195 1 29 HELIX 23 AC5 ASP B 197 MET B 222 1 26 HELIX 24 AC6 THR B 243 ALA B 253 1 11 HELIX 25 AC7 PRO B 254 ASP B 267 1 14 HELIX 26 AC8 PRO B 271 TYR B 286 1 16 HELIX 27 AC9 ASP B 287 GLN B 308 1 22 HELIX 28 AD1 SER B 313 LEU B 322 1 10 HELIX 29 AD2 MET C 48 VAL C 60 1 13 HELIX 30 AD3 ASP C 63 ASP C 89 1 27 HELIX 31 AD4 GLU C 106 CYS C 127 1 22 HELIX 32 AD5 PRO C 133 ARG C 160 1 28 HELIX 33 AD6 SER C 167 GLY C 194 1 28 HELIX 34 AD7 ASP C 197 MET C 222 1 26 HELIX 35 AD8 THR C 243 ALA C 253 1 11 HELIX 36 AD9 PRO C 254 ASP C 267 1 14 HELIX 37 AE1 PRO C 271 ASP C 281 1 11 HELIX 38 AE2 ALA C 289 THR C 309 1 21 HELIX 39 AE3 SER C 313 VAL C 324 1 12 HELIX 40 AE4 MET D 47 VAL D 60 1 14 HELIX 41 AE5 ASP D 63 ASP D 89 1 27 HELIX 42 AE6 GLU D 106 GLU D 126 1 21 HELIX 43 AE7 CYS D 127 GLU D 129 5 3 HELIX 44 AE8 PRO D 133 ARG D 160 1 28 HELIX 45 AE9 SER D 167 GLY D 194 1 28 HELIX 46 AF1 ASP D 197 ALA D 223 1 27 HELIX 47 AF2 THR D 243 ARG D 252 1 10 HELIX 48 AF3 ARG D 255 ASP D 267 1 13 HELIX 49 AF4 PRO D 271 ASP D 281 1 11 HELIX 50 AF5 ALA D 289 THR D 309 1 21 HELIX 51 AF6 SER D 313 LEU D 322 1 10 LINK OD1 ASP D 85 MG MG D 401 1555 1555 2.81 LINK OD2 ASP D 85 MG MG D 401 1555 1555 2.36 LINK MG MG D 401 O2B FPS D 402 1555 1555 2.87 CISPEP 1 VAL A 42 PRO A 43 0 -3.09 CISPEP 2 VAL B 42 PRO B 43 0 -4.93 CRYST1 58.930 71.870 84.000 86.28 69.39 89.99 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016969 -0.000003 -0.006397 0.00000 SCALE2 0.000000 0.013914 -0.000966 0.00000 SCALE3 0.000000 0.000000 0.012749 0.00000 MTRIX1 1 0.999998 0.002083 0.000682 0.23152 1 MTRIX2 1 0.002086 -0.999984 -0.005215 -38.95669 1 MTRIX3 1 0.000671 0.005216 -0.999986 -92.36637 1 MTRIX1 2 0.999481 0.032106 -0.002591 0.39851 1 MTRIX2 2 0.032114 -0.999479 0.003283 -37.21520 1 MTRIX3 2 -0.002484 -0.003365 -0.999991 -92.36460 1 CONECT 6746 8377 CONECT 6747 8377 CONECT 8353 8354 8355 CONECT 8354 8353 8369 CONECT 8355 8353 8356 CONECT 8356 8355 8357 8358 CONECT 8357 8356 CONECT 8358 8356 8359 CONECT 8359 8358 8360 CONECT 8360 8359 8361 CONECT 8361 8360 8362 8363 CONECT 8362 8361 8364 CONECT 8363 8361 CONECT 8364 8362 8365 CONECT 8365 8364 8366 CONECT 8366 8365 8367 8368 CONECT 8367 8366 CONECT 8368 8366 CONECT 8369 8354 8370 8371 8372 CONECT 8370 8369 CONECT 8371 8369 CONECT 8372 8369 8373 CONECT 8373 8372 8374 8375 8376 CONECT 8374 8373 CONECT 8375 8373 CONECT 8376 8373 CONECT 8377 6746 6747 8400 CONECT 8378 8379 8380 CONECT 8379 8378 8394 CONECT 8380 8378 8381 CONECT 8381 8380 8382 8383 CONECT 8382 8381 CONECT 8383 8381 8384 CONECT 8384 8383 8385 CONECT 8385 8384 8386 CONECT 8386 8385 8387 8388 CONECT 8387 8386 8389 CONECT 8388 8386 CONECT 8389 8387 8390 CONECT 8390 8389 8391 CONECT 8391 8390 8392 8393 CONECT 8392 8391 CONECT 8393 8391 CONECT 8394 8379 8395 8396 8397 CONECT 8395 8394 CONECT 8396 8394 CONECT 8397 8394 8398 CONECT 8398 8397 8399 8400 8401 CONECT 8399 8398 CONECT 8400 8377 8398 CONECT 8401 8398 MASTER 509 0 3 51 0 0 0 12 8450 4 51 104 END