HEADER TRANSFERASE 27-MAY-25 9V70 TITLE STRUCTURAL BASIS OF SIGNAL ACTIVATION AND TRANSDUCTION BY CHITIN TITLE 2 ELICITOR RECEPTOR KINASE 1 IN ORYZA SATIVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITIN ELICITOR RECEPTOR KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: OSCERK1,LYSM DOMAIN RECEPTOR-LIKE KINASE 1,LYSM RLK1,LYSM- COMPND 5 CONTAINING RECEPTOR-LIKE KINASE 1,LYSM DOMAIN RECEPTOR-LIKE KINASE 9, COMPND 6 OSLYSM-RLK9; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPANESE RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: CERK1, RLK9, OS08G0538300, LOC_OS08G42580, P0665C04.34, SOURCE 6 P0666G10.101; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS POSCERK1-JM+KD-ADP (ROD-LIKE) COMPLEX, THE COMBINED JUXTAMEMBRANE AND KEYWDS 2 KINASE DOMAINS OF OSCERK1 BOUND TO ADP IN PHOSPHORYLATED STATE, ROD- KEYWDS 3 LIKE CRYSTAL SHAPE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.H.SU,Z.H.MING REVDAT 1 18-FEB-26 9V70 0 JRNL AUTH Z.SU,S.ZHOU,S.YU,X.NING,Q.FU,Q.FU,Q.ZHAO,J.MA,C.NIU,Y.KONG, JRNL AUTH 2 Y.PENG,Z.MING JRNL TITL STRUCTURAL BASIS OF OSCERK1-MEDIATED SIGNAL ACTIVATION AND JRNL TITL 2 TRANSDUCTION IN RICE IMMUNITY AND SYMBIOSIS. JRNL REF PLANT COMMUN. 01677 2025 JRNL REFN ISSN 2590-3462 JRNL PMID 41403133 JRNL DOI 10.1016/J.XPLC.2025.101677 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3823 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0160 - 8.4413 0.99 1290 140 0.1767 0.2191 REMARK 3 2 8.4413 - 6.7077 1.00 1291 145 0.1888 0.1869 REMARK 3 3 6.7077 - 5.8620 1.00 1305 140 0.1966 0.2042 REMARK 3 4 5.8620 - 5.3271 1.00 1296 142 0.2106 0.2713 REMARK 3 5 5.3271 - 4.9458 1.00 1277 142 0.1836 0.2045 REMARK 3 6 4.9458 - 4.6545 1.00 1295 148 0.1672 0.2102 REMARK 3 7 4.6545 - 4.4217 1.00 1288 136 0.1758 0.2092 REMARK 3 8 4.4217 - 4.2294 1.00 1298 137 0.1786 0.2305 REMARK 3 9 4.2294 - 4.0667 1.00 1270 142 0.1780 0.2600 REMARK 3 10 4.0667 - 3.9264 1.00 1316 141 0.1933 0.2813 REMARK 3 11 3.9264 - 3.8037 1.00 1284 143 0.2156 0.2486 REMARK 3 12 3.8037 - 3.6950 1.00 1305 140 0.2128 0.2193 REMARK 3 13 3.6950 - 3.5978 1.00 1292 144 0.2096 0.3087 REMARK 3 14 3.5978 - 3.5101 1.00 1294 138 0.1961 0.2248 REMARK 3 15 3.5101 - 3.4303 1.00 1283 134 0.2108 0.2905 REMARK 3 16 3.4303 - 3.3573 1.00 1299 138 0.2236 0.2289 REMARK 3 17 3.3573 - 3.2902 1.00 1292 146 0.2425 0.2552 REMARK 3 18 3.2902 - 3.2281 1.00 1279 139 0.2300 0.3345 REMARK 3 19 3.2281 - 3.1705 1.00 1296 146 0.2517 0.2992 REMARK 3 20 3.1705 - 3.1168 1.00 1254 140 0.2605 0.2775 REMARK 3 21 3.1168 - 3.0665 1.00 1319 146 0.2466 0.3038 REMARK 3 22 3.0665 - 3.0193 1.00 1298 148 0.2599 0.2794 REMARK 3 23 3.0193 - 2.9749 1.00 1298 134 0.2677 0.3195 REMARK 3 24 2.9749 - 2.9330 1.00 1310 148 0.2942 0.3598 REMARK 3 25 2.9330 - 2.8934 1.00 1251 144 0.3025 0.3055 REMARK 3 26 2.8934 - 2.8558 1.00 1275 140 0.3243 0.3918 REMARK 3 27 2.8558 - 2.8202 1.00 1308 142 0.3447 0.3614 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4231 REMARK 3 ANGLE : 0.785 5727 REMARK 3 CHIRALITY : 0.048 646 REMARK 3 PLANARITY : 0.004 711 REMARK 3 DIHEDRAL : 8.103 2517 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9V70 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 30-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300059897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20505 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 120.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% V/V POLYETHYLENE GLYCOL 200, 0.05 M REMARK 280 BIS-TRIS PROPANE PH 9.0, 9% W/V POLYETHYLENE GLYCOL 8,000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.15233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.30467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.30467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.15233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -40.15233 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 276 REMARK 465 GLU A 277 REMARK 465 ASP A 278 REMARK 465 SER A 279 REMARK 465 THR A 280 REMARK 465 GLN A 281 REMARK 465 LEU A 282 REMARK 465 GLY A 283 REMARK 465 THR A 284 REMARK 465 ILE A 285 REMARK 465 SER A 286 REMARK 465 MET A 287 REMARK 465 ASP A 288 REMARK 465 LYS A 289 REMARK 465 VAL A 290 REMARK 465 THR A 291 REMARK 465 PRO A 292 REMARK 465 SER A 293 REMARK 465 THR A 294 REMARK 465 ILE A 295 REMARK 465 VAL A 296 REMARK 465 GLY A 297 REMARK 465 PRO A 298 REMARK 465 SER A 299 REMARK 465 PRO A 300 REMARK 465 VAL A 301 REMARK 465 ALA A 302 REMARK 465 GLY A 303 REMARK 465 ILE A 304 REMARK 465 THR A 305 REMARK 465 VAL A 306 REMARK 465 ASP A 307 REMARK 465 LYS A 308 REMARK 465 SER A 309 REMARK 465 MET A 355 REMARK 465 GLN A 356 REMARK 465 ALA A 357 REMARK 465 THR A 358 REMARK 465 HIS A 359 REMARK 465 GLU A 360 REMARK 465 LEU A 467 REMARK 465 THR A 468 REMARK 465 GLU A 469 REMARK 465 VAL A 470 REMARK 465 GLY A 471 REMARK 465 GLY A 472 REMARK 465 THR A 473 REMARK 465 SER A 474 REMARK 465 MET A 475 REMARK 465 PRO A 476 REMARK 465 THR A 477 REMARK 465 GLY A 478 REMARK 465 THR A 479 REMARK 465 ARG A 480 REMARK 465 VAL A 481 REMARK 465 ARG A 523 REMARK 465 SER A 524 REMARK 465 THR A 525 REMARK 465 GLU A 526 REMARK 465 SER A 527 REMARK 465 SER A 528 REMARK 465 SER A 529 REMARK 465 ASP A 530 REMARK 465 SER A 601 REMARK 465 THR A 602 REMARK 465 SER A 603 REMARK 465 GLU A 604 REMARK 465 SER B 276 REMARK 465 GLU B 277 REMARK 465 ASP B 278 REMARK 465 SER B 279 REMARK 465 THR B 280 REMARK 465 GLN B 281 REMARK 465 LEU B 282 REMARK 465 GLY B 283 REMARK 465 THR B 284 REMARK 465 ILE B 285 REMARK 465 SER B 286 REMARK 465 MET B 287 REMARK 465 ASP B 288 REMARK 465 LYS B 289 REMARK 465 VAL B 290 REMARK 465 THR B 291 REMARK 465 PRO B 292 REMARK 465 SER B 293 REMARK 465 THR B 294 REMARK 465 ILE B 295 REMARK 465 VAL B 296 REMARK 465 GLY B 297 REMARK 465 PRO B 298 REMARK 465 SER B 299 REMARK 465 PRO B 300 REMARK 465 VAL B 301 REMARK 465 ALA B 302 REMARK 465 GLY B 303 REMARK 465 ILE B 304 REMARK 465 THR B 305 REMARK 465 VAL B 306 REMARK 465 ASP B 307 REMARK 465 LYS B 308 REMARK 465 SER B 309 REMARK 465 MET B 355 REMARK 465 GLN B 356 REMARK 465 ALA B 357 REMARK 465 THR B 358 REMARK 465 HIS B 359 REMARK 465 GLU B 360 REMARK 465 PHE B 361 REMARK 465 LYS B 466 REMARK 465 LEU B 467 REMARK 465 THR B 468 REMARK 465 GLU B 469 REMARK 465 VAL B 470 REMARK 465 GLY B 471 REMARK 465 GLY B 472 REMARK 465 THR B 473 REMARK 465 SER B 474 REMARK 465 MET B 475 REMARK 465 PRO B 476 REMARK 465 THR B 477 REMARK 465 GLY B 478 REMARK 465 THR B 479 REMARK 465 ARG B 480 REMARK 465 ARG B 523 REMARK 465 SER B 524 REMARK 465 THR B 525 REMARK 465 GLU B 526 REMARK 465 SER B 527 REMARK 465 SER B 528 REMARK 465 SER B 529 REMARK 465 ASP B 530 REMARK 465 ASN B 543 REMARK 465 SER B 544 REMARK 465 PRO B 545 REMARK 465 ASP B 546 REMARK 465 SER B 601 REMARK 465 THR B 602 REMARK 465 SER B 603 REMARK 465 GLU B 604 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 362 63.14 -110.01 REMARK 500 GLU A 364 43.63 -85.42 REMARK 500 SER A 386 -67.98 63.32 REMARK 500 GLU A 433 -57.08 -136.39 REMARK 500 ASP A 443 55.12 -142.18 REMARK 500 ASN A 543 64.01 -103.46 REMARK 500 ASP A 562 32.98 -99.73 REMARK 500 SER B 386 -75.31 72.58 REMARK 500 ASN B 397 42.91 -154.03 REMARK 500 ASP B 443 45.62 -143.41 REMARK 500 LYS B 532 145.91 -179.04 REMARK 500 PRO B 564 86.14 -69.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 MG A 702 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 448 OD1 REMARK 620 2 ASP A 461 OD2 83.7 REMARK 620 3 ADP A 701 O2B 123.8 116.7 REMARK 620 4 ADP A 701 O2A 151.9 73.1 81.8 REMARK 620 N 1 2 3 DBREF1 9V70 A 276 604 UNP CERK1_ORYSJ DBREF2 9V70 A A0A0P0XII1 276 604 DBREF1 9V70 B 276 604 UNP CERK1_ORYSJ DBREF2 9V70 B A0A0P0XII1 276 604 SEQRES 1 A 329 SER GLU ASP SER THR GLN LEU GLY THR ILE SER MET ASP SEQRES 2 A 329 LYS VAL THR PRO SER THR ILE VAL GLY PRO SER PRO VAL SEQRES 3 A 329 ALA GLY ILE THR VAL ASP LYS SER VAL GLU PHE SER TYR SEQRES 4 A 329 GLU GLU LEU SER ASN ALA THR GLN GLY PHE SER ILE GLY SEQRES 5 A 329 ASN LYS ILE GLY GLN GLY GLY PHE GLY ALA VAL TYR TYR SEQRES 6 A 329 ALA GLU LEU ARG GLY GLU LYS ALA ALA ILE LYS LYS MET SEQRES 7 A 329 ASP MET GLN ALA THR HIS GLU PHE LEU ALA GLU LEU LYS SEQRES 8 A 329 VAL LEU THR HIS VAL HIS HIS LEU ASN LEU VAL ARG LEU SEQRES 9 A 329 ILE GLY TYR CYS ILE GLU SER SER LEU PHE LEU VAL TYR SEQRES 10 A 329 GLU PHE ILE GLU ASN GLY ASN LEU SER GLN HIS LEU ARG SEQRES 11 A 329 GLY MET GLY TYR GLU PRO LEU SER TRP ALA ALA ARG ILE SEQRES 12 A 329 GLN ILE ALA LEU ASP SER ALA ARG GLY LEU GLU TYR ILE SEQRES 13 A 329 HIS GLU HIS THR VAL PRO VAL TYR ILE HIS ARG ASP ILE SEQRES 14 A 329 LYS SER ALA ASN ILE LEU ILE ASP LYS ASN TYR ARG ALA SEQRES 15 A 329 LYS VAL ALA ASP PHE GLY LEU THR LYS LEU THR GLU VAL SEQRES 16 A 329 GLY GLY THR SER MET PRO THR GLY THR ARG VAL VAL GLY SEQRES 17 A 329 THR PHE GLY TYR MET PRO PRO GLU TYR ALA ARG TYR GLY SEQRES 18 A 329 ASP VAL SER PRO LYS VAL ASP VAL TYR ALA PHE GLY VAL SEQRES 19 A 329 VAL LEU TYR GLU LEU ILE SER ALA LYS GLU ALA ILE VAL SEQRES 20 A 329 ARG SER THR GLU SER SER SER ASP SER LYS GLY LEU VAL SEQRES 21 A 329 TYR LEU PHE GLU GLU ALA LEU ASN SER PRO ASP PRO LYS SEQRES 22 A 329 GLU GLY LEU ARG THR LEU ILE ASP PRO LYS LEU GLY GLU SEQRES 23 A 329 ASP TYR PRO ILE ASP SER ILE LEU LYS LEU THR GLN LEU SEQRES 24 A 329 ALA LYS VAL CYS THR GLN GLU ASP PRO LYS LEU ARG PRO SEQRES 25 A 329 SER MET ARG SER VAL VAL VAL ALA LEU MET THR LEU SER SEQRES 26 A 329 SER THR SER GLU SEQRES 1 B 329 SER GLU ASP SER THR GLN LEU GLY THR ILE SER MET ASP SEQRES 2 B 329 LYS VAL THR PRO SER THR ILE VAL GLY PRO SER PRO VAL SEQRES 3 B 329 ALA GLY ILE THR VAL ASP LYS SER VAL GLU PHE SER TYR SEQRES 4 B 329 GLU GLU LEU SER ASN ALA THR GLN GLY PHE SER ILE GLY SEQRES 5 B 329 ASN LYS ILE GLY GLN GLY GLY PHE GLY ALA VAL TYR TYR SEQRES 6 B 329 ALA GLU LEU ARG GLY GLU LYS ALA ALA ILE LYS LYS MET SEQRES 7 B 329 ASP MET GLN ALA THR HIS GLU PHE LEU ALA GLU LEU LYS SEQRES 8 B 329 VAL LEU THR HIS VAL HIS HIS LEU ASN LEU VAL ARG LEU SEQRES 9 B 329 ILE GLY TYR CYS ILE GLU SER SER LEU PHE LEU VAL TYR SEQRES 10 B 329 GLU PHE ILE GLU ASN GLY ASN LEU SER GLN HIS LEU ARG SEQRES 11 B 329 GLY MET GLY TYR GLU PRO LEU SER TRP ALA ALA ARG ILE SEQRES 12 B 329 GLN ILE ALA LEU ASP SER ALA ARG GLY LEU GLU TYR ILE SEQRES 13 B 329 HIS GLU HIS THR VAL PRO VAL TYR ILE HIS ARG ASP ILE SEQRES 14 B 329 LYS SER ALA ASN ILE LEU ILE ASP LYS ASN TYR ARG ALA SEQRES 15 B 329 LYS VAL ALA ASP PHE GLY LEU THR LYS LEU THR GLU VAL SEQRES 16 B 329 GLY GLY THR SER MET PRO THR GLY THR ARG VAL VAL GLY SEQRES 17 B 329 THR PHE GLY TYR MET PRO PRO GLU TYR ALA ARG TYR GLY SEQRES 18 B 329 ASP VAL SER PRO LYS VAL ASP VAL TYR ALA PHE GLY VAL SEQRES 19 B 329 VAL LEU TYR GLU LEU ILE SER ALA LYS GLU ALA ILE VAL SEQRES 20 B 329 ARG SER THR GLU SER SER SER ASP SER LYS GLY LEU VAL SEQRES 21 B 329 TYR LEU PHE GLU GLU ALA LEU ASN SER PRO ASP PRO LYS SEQRES 22 B 329 GLU GLY LEU ARG THR LEU ILE ASP PRO LYS LEU GLY GLU SEQRES 23 B 329 ASP TYR PRO ILE ASP SER ILE LEU LYS LEU THR GLN LEU SEQRES 24 B 329 ALA LYS VAL CYS THR GLN GLU ASP PRO LYS LEU ARG PRO SEQRES 25 B 329 SER MET ARG SER VAL VAL VAL ALA LEU MET THR LEU SER SEQRES 26 B 329 SER THR SER GLU HET ADP A 701 27 HET MG A 702 1 HET ADP B 701 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG MG 2+ HELIX 1 AA1 SER A 313 THR A 321 1 9 HELIX 2 AA2 SER A 325 GLY A 327 5 3 HELIX 3 AA3 ASN A 399 ARG A 405 1 7 HELIX 4 AA4 SER A 413 HIS A 434 1 22 HELIX 5 AA5 LYS A 445 ALA A 447 5 3 HELIX 6 AA6 PRO A 489 ALA A 493 5 5 HELIX 7 AA7 SER A 499 ALA A 517 1 19 HELIX 8 AA8 GLY A 533 ASN A 543 1 11 HELIX 9 AA9 ASP A 546 LEU A 554 1 9 HELIX 10 AB1 ILE A 555 GLY A 560 5 6 HELIX 11 AB2 PRO A 564 THR A 579 1 16 HELIX 12 AB3 ASP A 582 ARG A 586 5 5 HELIX 13 AB4 SER A 588 LEU A 599 1 12 HELIX 14 AB5 SER B 313 THR B 321 1 9 HELIX 15 AB6 SER B 325 LYS B 329 5 5 HELIX 16 AB7 LEU B 362 LEU B 368 5 7 HELIX 17 AB8 ASN B 399 GLY B 406 1 8 HELIX 18 AB9 SER B 413 HIS B 434 1 22 HELIX 19 AC1 LYS B 445 ALA B 447 5 3 HELIX 20 AC2 PRO B 489 GLY B 496 1 8 HELIX 21 AC3 SER B 499 ALA B 517 1 19 HELIX 22 AC4 GLY B 533 LEU B 542 1 10 HELIX 23 AC5 LYS B 548 ILE B 555 1 8 HELIX 24 AC6 ASP B 556 GLY B 560 5 5 HELIX 25 AC7 PRO B 564 THR B 579 1 16 HELIX 26 AC8 ASP B 582 ARG B 586 5 5 HELIX 27 AC9 SER B 588 LEU B 599 1 12 SHEET 1 AA1 5 LYS A 329 GLN A 332 0 SHEET 2 AA1 5 ALA A 337 LEU A 343 -1 O VAL A 338 N GLY A 331 SHEET 3 AA1 5 GLU A 346 LYS A 352 -1 O ILE A 350 N TYR A 339 SHEET 4 AA1 5 PHE A 389 GLU A 393 -1 O TYR A 392 N ALA A 349 SHEET 5 AA1 5 LEU A 379 CYS A 383 -1 N CYS A 383 O PHE A 389 SHEET 1 AA2 2 ILE A 449 ILE A 451 0 SHEET 2 AA2 2 ALA A 457 VAL A 459 -1 O LYS A 458 N LEU A 450 SHEET 1 AA3 4 VAL B 338 LEU B 343 0 SHEET 2 AA3 4 GLU B 346 LYS B 352 -1 O ILE B 350 N TYR B 339 SHEET 3 AA3 4 PHE B 389 GLU B 393 -1 O LEU B 390 N LYS B 351 SHEET 4 AA3 4 LEU B 379 CYS B 383 -1 N GLY B 381 O VAL B 391 SHEET 1 AA4 2 ILE B 449 ILE B 451 0 SHEET 2 AA4 2 ALA B 457 VAL B 459 -1 O LYS B 458 N LEU B 450 LINK OD1 ASN A 448 MG MG A 702 1555 1555 2.01 LINK OD2 ASP A 461 MG MG A 702 1555 1555 2.58 LINK O2B ADP A 701 MG MG A 702 1555 1555 2.31 LINK O2A ADP A 701 MG MG A 702 1555 1555 2.01 CISPEP 1 VAL A 436 PRO A 437 0 -6.60 CISPEP 2 VAL B 436 PRO B 437 0 -2.47 CRYST1 109.203 109.203 120.457 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009157 0.005287 0.000000 0.00000 SCALE2 0.000000 0.010574 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008302 0.00000 CONECT 1059 4122 CONECT 1166 4122 CONECT 4095 4096 4097 4098 4102 CONECT 4096 4095 CONECT 4097 4095 4122 CONECT 4098 4095 CONECT 4099 4100 4101 4102 4103 CONECT 4100 4099 CONECT 4101 4099 4122 CONECT 4102 4095 4099 CONECT 4103 4099 4104 CONECT 4104 4103 4105 CONECT 4105 4104 4106 4107 CONECT 4106 4105 4111 CONECT 4107 4105 4108 4109 CONECT 4108 4107 CONECT 4109 4107 4110 4111 CONECT 4110 4109 CONECT 4111 4106 4109 4112 CONECT 4112 4111 4113 4121 CONECT 4113 4112 4114 CONECT 4114 4113 4115 CONECT 4115 4114 4116 4121 CONECT 4116 4115 4117 4118 CONECT 4117 4116 CONECT 4118 4116 4119 CONECT 4119 4118 4120 CONECT 4120 4119 4121 CONECT 4121 4112 4115 4120 CONECT 4122 1059 1166 4097 4101 CONECT 4123 4124 4125 4126 4130 CONECT 4124 4123 CONECT 4125 4123 CONECT 4126 4123 CONECT 4127 4128 4129 4130 4131 CONECT 4128 4127 CONECT 4129 4127 CONECT 4130 4123 4127 CONECT 4131 4127 4132 CONECT 4132 4131 4133 CONECT 4133 4132 4134 4135 CONECT 4134 4133 4139 CONECT 4135 4133 4136 4137 CONECT 4136 4135 CONECT 4137 4135 4138 4139 CONECT 4138 4137 CONECT 4139 4134 4137 4140 CONECT 4140 4139 4141 4149 CONECT 4141 4140 4142 CONECT 4142 4141 4143 CONECT 4143 4142 4144 4149 CONECT 4144 4143 4145 4146 CONECT 4145 4144 CONECT 4146 4144 4147 CONECT 4147 4146 4148 CONECT 4148 4147 4149 CONECT 4149 4140 4143 4148 MASTER 449 0 3 27 13 0 0 6 4147 2 57 52 END