HEADER TRANSCRIPTION 29-MAY-25 9V8D TITLE PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH PG08 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PG08; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS NUCLEAR RECEPTOR, DE NOVO PEPTIDE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.SIGAL,C.OKADA,T.KATOH,H.SUGA,T.SENGOKU REVDAT 4 03-DEC-25 9V8D 1 JRNL REVDAT 3 19-NOV-25 9V8D 1 JRNL REVDAT 2 12-NOV-25 9V8D 1 JRNL REVDAT 1 05-NOV-25 9V8D 0 JRNL AUTH M.SIGAL,M.EGNER,C.OKADA,D.MERK,T.SENGOKU,T.KATOH,H.SUGA JRNL TITL DE NOVO DISCOVERY OF ALPHA , ALPHA-DISUBSTITUTED ALPHA-AMINO JRNL TITL 2 ACID-CONTAINING ALPHA-HELICAL PEPTIDES AS COMPETITIVE PPAR JRNL TITL 3 GAMMA PPI INHIBITORS. JRNL REF J.AM.CHEM.SOC. V. 147 42607 2025 JRNL REFN ESSN 1520-5126 JRNL PMID 41188059 JRNL DOI 10.1021/JACS.5C13803 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.729 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3759 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28300 REMARK 3 B22 (A**2) : 0.59700 REMARK 3 B33 (A**2) : -0.32100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.665 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2319 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2313 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3132 ; 1.890 ; 1.837 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5345 ; 0.601 ; 1.755 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 5.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 9 ; 7.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 435 ;12.947 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2609 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 487 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 536 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 46 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1168 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1138 ; 1.336 ; 0.954 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1138 ; 1.334 ; 0.953 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1426 ; 2.192 ; 1.690 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1427 ; 2.193 ; 1.690 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1181 ; 2.273 ; 1.285 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1182 ; 2.272 ; 1.285 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1706 ; 3.546 ; 2.201 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1707 ; 3.545 ; 2.201 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7010 -9.1160 -6.5600 REMARK 3 T TENSOR REMARK 3 T11: 0.1547 T22: 0.0481 REMARK 3 T33: 0.0957 T12: -0.0269 REMARK 3 T13: -0.0339 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.2348 L22: 1.1924 REMARK 3 L33: 2.2933 L12: -0.0234 REMARK 3 L13: -1.3415 L23: -0.2845 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.2090 S13: 0.0031 REMARK 3 S21: -0.1012 S22: 0.0479 S23: 0.1691 REMARK 3 S31: 0.1781 S32: -0.2455 S33: -0.0369 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 239 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1330 -20.6690 -26.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.3864 T22: 0.1833 REMARK 3 T33: 0.0666 T12: -0.1137 REMARK 3 T13: 0.0068 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 5.2166 L22: 4.9783 REMARK 3 L33: 9.0040 L12: 4.9636 REMARK 3 L13: -3.1451 L23: -4.3067 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: 0.3972 S13: -0.0081 REMARK 3 S21: -0.0332 S22: 0.3900 S23: 0.0976 REMARK 3 S31: 0.6901 S32: -0.5420 S33: -0.4524 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1610 -9.4210 -36.9730 REMARK 3 T TENSOR REMARK 3 T11: 0.2608 T22: 0.2423 REMARK 3 T33: 0.0260 T12: -0.0146 REMARK 3 T13: 0.0059 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.6618 L22: 7.0736 REMARK 3 L33: 1.2629 L12: 0.7878 REMARK 3 L13: -0.8346 L23: 1.9762 REMARK 3 S TENSOR REMARK 3 S11: -0.1012 S12: 0.4776 S13: 0.0015 REMARK 3 S21: -0.2219 S22: 0.0459 S23: 0.1782 REMARK 3 S31: -0.0403 S32: -0.2994 S33: 0.0553 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 277 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7160 -0.1850 -21.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.2513 T22: 0.0755 REMARK 3 T33: 0.0772 T12: 0.0119 REMARK 3 T13: 0.0150 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.4294 L22: 1.5026 REMARK 3 L33: 6.0292 L12: -0.7982 REMARK 3 L13: -3.4526 L23: 2.1911 REMARK 3 S TENSOR REMARK 3 S11: 0.0474 S12: 0.2425 S13: -0.0448 REMARK 3 S21: -0.3801 S22: 0.0515 S23: -0.0233 REMARK 3 S31: -0.1700 S32: 0.0174 S33: -0.0990 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 303 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0120 4.1100 -8.6360 REMARK 3 T TENSOR REMARK 3 T11: 0.1452 T22: 0.0107 REMARK 3 T33: 0.0861 T12: 0.0069 REMARK 3 T13: -0.0078 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.7734 L22: 2.2324 REMARK 3 L33: 0.9433 L12: -0.6098 REMARK 3 L13: -0.2981 L23: 0.4849 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: 0.0435 S13: 0.0481 REMARK 3 S21: -0.1681 S22: -0.0270 S23: -0.0477 REMARK 3 S31: -0.0132 S32: 0.0246 S33: -0.0070 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 334 A 364 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3670 -13.2490 -24.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.0994 REMARK 3 T33: 0.0667 T12: 0.0494 REMARK 3 T13: 0.0052 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.9605 L22: 1.3814 REMARK 3 L33: 4.7422 L12: 0.7979 REMARK 3 L13: -1.2856 L23: -0.3883 REMARK 3 S TENSOR REMARK 3 S11: -0.1302 S12: 0.2320 S13: -0.0140 REMARK 3 S21: -0.0830 S22: 0.0147 S23: -0.1631 REMARK 3 S31: 0.3439 S32: 0.3127 S33: 0.1156 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 365 A 377 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0620 -14.1310 -11.7400 REMARK 3 T TENSOR REMARK 3 T11: 0.1660 T22: 0.0790 REMARK 3 T33: 0.1158 T12: 0.0548 REMARK 3 T13: -0.0027 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 5.3534 L22: 1.4737 REMARK 3 L33: 7.3637 L12: -0.0216 REMARK 3 L13: -3.3060 L23: -0.2613 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: -0.0700 S13: 0.0648 REMARK 3 S21: -0.0496 S22: 0.0233 S23: -0.1998 REMARK 3 S31: 0.1859 S32: 0.5406 S33: 0.0154 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 378 A 430 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6480 -3.1770 1.7630 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.0039 REMARK 3 T33: 0.0964 T12: 0.0005 REMARK 3 T13: -0.0156 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.9224 L22: 2.8002 REMARK 3 L33: 0.7432 L12: 0.8422 REMARK 3 L13: -0.2074 L23: -0.5026 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: -0.0306 S13: -0.0160 REMARK 3 S21: 0.0717 S22: -0.0260 S23: -0.0753 REMARK 3 S31: 0.0133 S32: 0.0498 S33: 0.0022 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 431 A 457 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7720 -4.2840 -9.2610 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.0711 REMARK 3 T33: 0.1937 T12: 0.0361 REMARK 3 T13: 0.0183 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 2.0022 L22: 3.0813 REMARK 3 L33: 4.0066 L12: 1.8149 REMARK 3 L13: -1.0038 L23: -2.5063 REMARK 3 S TENSOR REMARK 3 S11: -0.1195 S12: 0.0895 S13: 0.1181 REMARK 3 S21: -0.1704 S22: -0.0493 S23: -0.2567 REMARK 3 S31: 0.0282 S32: 0.1716 S33: 0.1688 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 458 A 477 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8620 7.4730 -22.6790 REMARK 3 T TENSOR REMARK 3 T11: 0.3311 T22: 0.1869 REMARK 3 T33: 0.2632 T12: 0.0620 REMARK 3 T13: 0.1743 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 6.2466 L22: 0.9588 REMARK 3 L33: 7.9481 L12: 2.2990 REMARK 3 L13: -0.0843 L23: 0.5592 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: 0.3402 S13: -0.0494 REMARK 3 S21: -0.1323 S22: 0.1445 S23: -0.1490 REMARK 3 S31: 0.2052 S32: 0.7198 S33: -0.0921 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -7.4550 19.7440 -11.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.2323 T22: 0.0771 REMARK 3 T33: 0.1435 T12: -0.0479 REMARK 3 T13: 0.0366 T23: 0.0487 REMARK 3 L TENSOR REMARK 3 L11: 9.5227 L22: 6.5645 REMARK 3 L33: 14.4658 L12: 5.4466 REMARK 3 L13: -0.1862 L23: 2.6181 REMARK 3 S TENSOR REMARK 3 S11: 0.1574 S12: 0.2753 S13: 0.5345 REMARK 3 S21: -0.0559 S22: -0.1659 S23: 0.0572 REMARK 3 S31: -0.9090 S32: 0.4011 S33: 0.0084 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -15.7050 13.1770 -15.1660 REMARK 3 T TENSOR REMARK 3 T11: 0.1695 T22: 0.0566 REMARK 3 T33: 0.0761 T12: 0.0246 REMARK 3 T13: 0.0119 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 10.1548 L22: 2.1140 REMARK 3 L33: 3.8072 L12: 1.8576 REMARK 3 L13: -1.7373 L23: -0.6716 REMARK 3 S TENSOR REMARK 3 S11: 0.0759 S12: 0.1522 S13: 0.0192 REMARK 3 S21: -0.2259 S22: -0.0971 S23: 0.0004 REMARK 3 S31: 0.0117 S32: -0.0548 S33: 0.0212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9V8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300059953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 41.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8HUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M KCL, 0.1 M MGCL2, 18% PEG SMEAR REMARK 280 MEDIUM, AND 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.73000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 203 REMARK 465 LEU A 204 REMARK 465 ASN A 205 REMARK 465 ASP A 243 REMARK 465 LYS A 244 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 DTY B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 SER B 22 REMARK 465 GLY B 23 REMARK 465 SER B 24 REMARK 465 ASN B 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 358 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 756 O HOH A 774 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 256 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 273 -148.21 57.16 REMARK 500 LYS A 458 -74.96 -74.29 REMARK 500 ASP A 462 36.08 -93.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 9V8D A 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 9V8D B 1 25 PDB 9V8D 9V8D 1 25 SEQRES 1 A 275 GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA SEQRES 2 A 275 LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU SEQRES 3 A 275 THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR SEQRES 4 A 275 THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER SEQRES 5 A 275 LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE SEQRES 6 A 275 THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG SEQRES 7 A 275 ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL SEQRES 8 A 275 GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE SEQRES 9 A 275 VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS SEQRES 10 A 275 TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER SEQRES 11 A 275 LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN SEQRES 12 A 275 GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS SEQRES 13 A 275 PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA SEQRES 14 A 275 VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU SEQRES 15 A 275 ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG SEQRES 16 A 275 PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN SEQRES 17 A 275 ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU SEQRES 18 A 275 ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU SEQRES 19 A 275 GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS SEQRES 20 A 275 VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP SEQRES 21 A 275 MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP SEQRES 22 A 275 LEU TYR SEQRES 1 B 25 DTY LYS THR ALA ASN SER VAL AC5 VAL ARG HIS AC5 LEU SEQRES 2 B 25 LEU THR ALA ILE LEU AC5 GLY VAL SER GLY SER ASN HET AC5 B 8 8 HET AC5 B 12 8 HET AC5 B 19 8 HET PEG A 501 7 HET PGE A 502 10 HET EDO A 503 4 HETNAM AC5 1-AMINOCYCLOPENTANECARBOXYLIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN AC5 CYCLO-LEUCINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 AC5 3(C6 H11 N O2) FORMUL 3 PEG C4 H10 O3 FORMUL 4 PGE C6 H14 O4 FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *205(H2 O) HELIX 1 AA1 GLU A 207 PHE A 226 1 20 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 GLU A 259 1 9 HELIX 4 AA4 GLU A 276 LYS A 301 1 26 HELIX 5 AA5 GLY A 305 LEU A 309 5 5 HELIX 6 AA6 ASP A 310 LEU A 333 1 24 HELIX 7 AA7 ARG A 350 SER A 355 1 6 HELIX 8 AA8 PRO A 359 PHE A 363 5 5 HELIX 9 AA9 MET A 364 ALA A 376 1 13 HELIX 10 AB1 ASP A 380 LEU A 393 1 14 HELIX 11 AB2 ASN A 402 HIS A 425 1 24 HELIX 12 AB3 GLN A 430 GLU A 460 1 31 HELIX 13 AB4 HIS A 466 LYS A 474 1 9 HELIX 14 AB5 SER B 6 HIS B 11 1 6 HELIX 15 AB6 HIS B 11 GLY B 20 1 10 SHEET 1 AA1 4 PHE A 247 ILE A 249 0 SHEET 2 AA1 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 AA1 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 LINK C VAL B 7 N AC5 B 8 1555 1555 1.34 LINK C AC5 B 8 N VAL B 9 1555 1555 1.34 LINK C HIS B 11 N AC5 B 12 1555 1555 1.35 LINK C AC5 B 12 N LEU B 13 1555 1555 1.33 LINK C LEU B 18 N AC5 B 19 1555 1555 1.35 LINK C AC5 B 19 N GLY B 20 1555 1555 1.34 CISPEP 1 LYS A 358 PRO A 359 0 -4.47 CRYST1 43.620 53.460 66.910 90.00 105.90 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022925 0.000000 0.006531 0.00000 SCALE2 0.000000 0.018706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015540 0.00000 CONECT 2148 2153 CONECT 2153 2148 2155 CONECT 2154 2156 CONECT 2155 2153 2156 2157 2158 CONECT 2156 2154 2155 2161 CONECT 2157 2155 2159 CONECT 2158 2155 2160 CONECT 2159 2157 2160 CONECT 2160 2158 2159 CONECT 2161 2156 CONECT 2181 2189 CONECT 2189 2181 2191 CONECT 2190 2192 CONECT 2191 2189 2192 2193 2194 CONECT 2192 2190 2191 2197 CONECT 2193 2191 2195 CONECT 2194 2191 2196 CONECT 2195 2193 2196 CONECT 2196 2194 2195 CONECT 2197 2192 CONECT 2235 2241 CONECT 2241 2235 2243 CONECT 2242 2244 CONECT 2243 2241 2244 2245 2246 CONECT 2244 2242 2243 2249 CONECT 2245 2243 2247 CONECT 2246 2243 2248 CONECT 2247 2245 2248 CONECT 2248 2246 2247 CONECT 2249 2244 CONECT 2261 2262 2263 CONECT 2262 2261 CONECT 2263 2261 2264 CONECT 2264 2263 2265 CONECT 2265 2264 2266 CONECT 2266 2265 2267 CONECT 2267 2266 CONECT 2268 2269 2270 CONECT 2269 2268 CONECT 2270 2268 2271 CONECT 2271 2270 2272 CONECT 2272 2271 2273 CONECT 2273 2272 2277 CONECT 2274 2275 CONECT 2275 2274 2276 CONECT 2276 2275 2277 CONECT 2277 2273 2276 CONECT 2278 2279 2280 CONECT 2279 2278 CONECT 2280 2278 2281 CONECT 2281 2280 MASTER 531 0 6 15 4 0 0 6 2440 2 51 24 END