HEADER TRANSCRIPTION 29-MAY-25 9V8E TITLE PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH PG11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PG11; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS NUCLEAR RECEPTOR, DE NOVO PEPTIDE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.SIGAL,C.OKADA,T.KATOH,H.SUGA,T.SENGOKU REVDAT 4 03-DEC-25 9V8E 1 JRNL REVDAT 3 19-NOV-25 9V8E 1 JRNL REVDAT 2 12-NOV-25 9V8E 1 JRNL REVDAT 1 05-NOV-25 9V8E 0 JRNL AUTH M.SIGAL,M.EGNER,C.OKADA,D.MERK,T.SENGOKU,T.KATOH,H.SUGA JRNL TITL DE NOVO DISCOVERY OF ALPHA , ALPHA-DISUBSTITUTED ALPHA-AMINO JRNL TITL 2 ACID-CONTAINING ALPHA-HELICAL PEPTIDES AS COMPETITIVE PPAR JRNL TITL 3 GAMMA PPI INHIBITORS. JRNL REF J.AM.CHEM.SOC. V. 147 42607 2025 JRNL REFN ESSN 1520-5126 JRNL PMID 41188059 JRNL DOI 10.1021/JACS.5C13803 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1626 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3024 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 118 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.720 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2186 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2175 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2929 ; 1.952 ; 1.844 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5010 ; 0.693 ; 1.764 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 5.760 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 10 ; 8.493 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;14.115 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2401 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 462 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1068 ; 2.876 ; 2.750 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1069 ; 2.875 ; 2.750 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1309 ; 3.883 ; 4.922 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1310 ; 3.881 ; 4.922 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1118 ; 4.794 ; 3.303 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1119 ; 4.793 ; 3.307 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1617 ; 7.186 ; 5.800 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2527 ; 8.672 ;28.150 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2494 ; 8.605 ;27.510 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7819 44.4751 -15.6091 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.0902 REMARK 3 T33: 0.0375 T12: 0.0366 REMARK 3 T13: 0.0027 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.0522 L22: 1.8740 REMARK 3 L33: 0.1601 L12: -0.2587 REMARK 3 L13: -0.2562 L23: 0.4582 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: 0.1716 S13: 0.1014 REMARK 3 S21: -0.2140 S22: 0.0070 S23: -0.0122 REMARK 3 S31: -0.0816 S32: -0.0492 S33: -0.0230 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): -28.4206 57.7308 1.7658 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.1015 REMARK 3 T33: 0.2312 T12: 0.0211 REMARK 3 T13: -0.0240 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.1762 L22: 2.5006 REMARK 3 L33: 0.0466 L12: 0.5546 REMARK 3 L13: 0.0808 L23: 0.3328 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: 0.0209 S13: 0.1590 REMARK 3 S21: -0.1485 S22: -0.0552 S23: 0.3502 REMARK 3 S31: -0.0229 S32: -0.0144 S33: 0.0835 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 277 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): -23.7195 40.3873 -4.4227 REMARK 3 T TENSOR REMARK 3 T11: 0.0727 T22: 0.0554 REMARK 3 T33: 0.2635 T12: 0.0060 REMARK 3 T13: -0.0723 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.7739 L22: 1.6389 REMARK 3 L33: 2.0131 L12: -1.5097 REMARK 3 L13: -1.6718 L23: 1.2978 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: 0.0646 S13: -0.1318 REMARK 3 S21: -0.0515 S22: -0.0975 S23: 0.3788 REMARK 3 S31: -0.0604 S32: -0.0026 S33: 0.1334 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 303 A 345 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1521 37.4676 -5.9360 REMARK 3 T TENSOR REMARK 3 T11: 0.0752 T22: 0.0810 REMARK 3 T33: 0.0842 T12: 0.0047 REMARK 3 T13: 0.0013 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.7110 L22: 0.7151 REMARK 3 L33: 0.3123 L12: -0.4613 REMARK 3 L13: -0.1437 L23: 0.4356 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: -0.0633 S13: -0.0548 REMARK 3 S21: -0.0915 S22: -0.0212 S23: -0.0292 REMARK 3 S31: -0.0601 S32: -0.0518 S33: -0.0310 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 346 A 364 REMARK 3 ORIGIN FOR THE GROUP (A): -22.3118 50.5790 8.9969 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.0914 REMARK 3 T33: 0.0884 T12: 0.0487 REMARK 3 T13: 0.0238 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 2.7949 L22: 1.0902 REMARK 3 L33: 1.2545 L12: -1.0234 REMARK 3 L13: -1.6942 L23: 0.2179 REMARK 3 S TENSOR REMARK 3 S11: -0.2093 S12: -0.2294 S13: -0.2014 REMARK 3 S21: 0.1481 S22: 0.1106 S23: 0.1377 REMARK 3 S31: 0.0897 S32: 0.1330 S33: 0.0986 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 365 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4371 44.2568 -2.2138 REMARK 3 T TENSOR REMARK 3 T11: 0.0620 T22: 0.0799 REMARK 3 T33: 0.0852 T12: 0.0089 REMARK 3 T13: -0.0053 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 1.3839 L22: 1.2704 REMARK 3 L33: 0.2762 L12: -1.2277 REMARK 3 L13: -0.5115 L23: 0.3288 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.1083 S13: 0.1071 REMARK 3 S21: 0.0261 S22: 0.1153 S23: -0.0678 REMARK 3 S31: 0.0247 S32: 0.0266 S33: -0.0688 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 393 A 430 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7417 32.5701 -8.2466 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.0634 REMARK 3 T33: 0.1348 T12: -0.0148 REMARK 3 T13: -0.0053 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.3351 L22: 1.4262 REMARK 3 L33: 0.0486 L12: 0.3242 REMARK 3 L13: -0.1136 L23: -0.1029 REMARK 3 S TENSOR REMARK 3 S11: 0.1008 S12: -0.0111 S13: -0.1649 REMARK 3 S21: -0.0182 S22: -0.0705 S23: -0.2218 REMARK 3 S31: -0.0166 S32: 0.0314 S33: -0.0304 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 431 A 459 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1693 37.0096 6.1191 REMARK 3 T TENSOR REMARK 3 T11: 0.0996 T22: 0.1066 REMARK 3 T33: 0.1488 T12: 0.0411 REMARK 3 T13: -0.0316 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.4797 L22: 0.4952 REMARK 3 L33: 0.2055 L12: 0.2374 REMARK 3 L13: -0.0197 L23: 0.2803 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: -0.3980 S13: -0.1778 REMARK 3 S21: 0.1606 S22: 0.0317 S23: -0.0557 REMARK 3 S31: 0.0806 S32: 0.0322 S33: 0.0588 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 460 A 476 REMARK 3 ORIGIN FOR THE GROUP (A): -26.7676 31.7621 2.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.3924 REMARK 3 T33: 0.3938 T12: -0.1585 REMARK 3 T13: 0.1600 T23: -0.2691 REMARK 3 L TENSOR REMARK 3 L11: 1.9550 L22: 1.4342 REMARK 3 L33: 0.0532 L12: -1.4225 REMARK 3 L13: -0.3205 L23: 0.2437 REMARK 3 S TENSOR REMARK 3 S11: 0.0279 S12: -0.4048 S13: -0.2786 REMARK 3 S21: 0.1438 S22: -0.0693 S23: 0.5782 REMARK 3 S31: -0.0012 S32: 0.0583 S33: 0.0415 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6245 17.8320 -7.8331 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.0690 REMARK 3 T33: 0.1929 T12: -0.0149 REMARK 3 T13: 0.0001 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 3.4556 L22: 1.4435 REMARK 3 L33: 0.5880 L12: 0.6614 REMARK 3 L13: 0.3710 L23: 0.4614 REMARK 3 S TENSOR REMARK 3 S11: 0.1999 S12: -0.2152 S13: -0.5129 REMARK 3 S21: -0.0889 S22: -0.0188 S23: 0.0353 REMARK 3 S31: -0.1098 S32: -0.0994 S33: -0.1812 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 17 REMARK 3 ORIGIN FOR THE GROUP (A): -23.8510 27.1974 -10.6257 REMARK 3 T TENSOR REMARK 3 T11: 0.0513 T22: 0.0692 REMARK 3 T33: 0.1479 T12: -0.0048 REMARK 3 T13: -0.0307 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 3.8132 L22: 0.0486 REMARK 3 L33: 1.1723 L12: 0.1972 REMARK 3 L13: 0.9384 L23: 0.2340 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: -0.0584 S13: -0.0006 REMARK 3 S21: -0.0070 S22: -0.0409 S23: 0.0300 REMARK 3 S31: -0.0093 S32: -0.1204 S33: 0.0660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9V8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300059981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42452 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 67.26 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8HUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE/CITRATE BUFFER (PH REMARK 280 5.5) AND 30% PEG SMEAR LOW, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.74000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.87000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.80500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.93500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.67500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 203 REMARK 465 LEU A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 LYS A 240 REMARK 465 THR A 241 REMARK 465 THR A 242 REMARK 465 ASP A 243 REMARK 465 LYS A 244 REMARK 465 ASP A 260 REMARK 465 LYS A 261 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 TYR A 477 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 427 O HOH A 501 2.11 REMARK 500 O HOH A 515 O HOH A 583 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 353 CB - CG - CD1 ANGL. DEV. = 11.2 DEGREES REMARK 500 LEU A 469 CB - CG - CD1 ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG B 5 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 335 -169.06 -126.62 REMARK 500 LEU A 393 49.62 -90.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 280 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 468 10.70 REMARK 500 AC5 B 7 13.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 9V8E A 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 9V8E B 0 18 PDB 9V8E 9V8E 0 18 SEQRES 1 A 275 GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA SEQRES 2 A 275 LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU SEQRES 3 A 275 THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR SEQRES 4 A 275 THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER SEQRES 5 A 275 LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE SEQRES 6 A 275 THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG SEQRES 7 A 275 ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL SEQRES 8 A 275 GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE SEQRES 9 A 275 VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS SEQRES 10 A 275 TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER SEQRES 11 A 275 LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN SEQRES 12 A 275 GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS SEQRES 13 A 275 PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA SEQRES 14 A 275 VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU SEQRES 15 A 275 ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG SEQRES 16 A 275 PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN SEQRES 17 A 275 ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU SEQRES 18 A 275 ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU SEQRES 19 A 275 GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS SEQRES 20 A 275 VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP SEQRES 21 A 275 MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP SEQRES 22 A 275 LEU TYR SEQRES 1 B 19 ACE DTY THR HIS LYS ARG LEU AC5 SER N9P 192 ARG LEU SEQRES 2 B 19 THR 192 ILE LEU CYS NH2 HET ACE B 0 3 HET DTY B 1 12 HET AC5 B 7 8 HET N9P B 9 11 HET 192 B 10 7 HET 192 B 14 7 HET NH2 B 18 1 HET PEG B 201 7 HETNAM ACE ACETYL GROUP HETNAM DTY D-TYROSINE HETNAM AC5 1-AMINOCYCLOPENTANECARBOXYLIC ACID HETNAM N9P 3-PYRIDIN-4-YL-L-ALANINE HETNAM 192 1-AMINOCYCLOBUTANECARBOXLIC ACID HETNAM NH2 AMINO GROUP HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN AC5 CYCLO-LEUCINE FORMUL 2 ACE C2 H4 O FORMUL 2 DTY C9 H11 N O3 FORMUL 2 AC5 C6 H11 N O2 FORMUL 2 N9P C8 H10 N2 O2 FORMUL 2 192 2(C5 H9 N O2) FORMUL 2 NH2 H2 N FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *148(H2 O) HELIX 1 AA1 GLU A 207 PHE A 226 1 20 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 GLU A 259 1 9 HELIX 4 AA4 GLU A 276 SER A 302 1 27 HELIX 5 AA5 GLY A 305 LEU A 309 5 5 HELIX 6 AA6 ASP A 310 SER A 332 1 23 HELIX 7 AA7 SER A 342 GLY A 344 5 3 HELIX 8 AA8 ARG A 350 SER A 355 1 6 HELIX 9 AA9 PRO A 359 PHE A 363 5 5 HELIX 10 AB1 MET A 364 ALA A 376 1 13 HELIX 11 AB2 ASP A 380 LEU A 393 1 14 HELIX 12 AB3 ASN A 402 HIS A 425 1 24 HELIX 13 AB4 GLN A 430 GLU A 460 1 31 HELIX 14 AB5 HIS A 466 LYS A 474 1 9 HELIX 15 AB6 ARG B 5 SER B 8 5 4 HELIX 16 AB7 N9P B 9 CYS B 17 1 9 SHEET 1 AA1 4 PHE A 247 ILE A 249 0 SHEET 2 AA1 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 AA1 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 LINK C ACE B 0 N DTY B 1 1555 1555 1.34 LINK CH3 ACE B 0 SG CYS B 17 1555 1555 1.85 LINK C DTY B 1 N THR B 2 1555 1555 1.36 LINK C LEU B 6 N AC5 B 7 1555 1555 1.36 LINK C AC5 B 7 N SER B 8 1555 1555 1.34 LINK C SER B 8 N N9P B 9 1555 1555 1.32 LINK C N9P B 9 N 192 B 10 1555 1555 1.34 LINK C 192 B 10 N ARG B 11 1555 1555 1.32 LINK C THR B 13 N 192 B 14 1555 1555 1.44 LINK C 192 B 14 N ILE B 15 1555 1555 1.37 LINK C CYS B 17 N NH2 B 18 1555 1555 1.33 CISPEP 1 LYS A 358 PRO A 359 0 -1.31 CRYST1 106.430 106.430 59.610 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009396 0.005425 0.000000 0.00000 SCALE2 0.000000 0.010849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016776 0.00000 CONECT 1998 1999 2000 2001 CONECT 1999 1998 CONECT 2000 1998 2144 CONECT 2001 1998 2002 CONECT 2002 2001 2003 2005 CONECT 2003 2002 2004 2013 CONECT 2004 2003 CONECT 2005 2002 2006 CONECT 2006 2005 2007 2008 CONECT 2007 2006 2009 CONECT 2008 2006 2010 CONECT 2009 2007 2011 CONECT 2010 2008 2011 CONECT 2011 2009 2010 2012 CONECT 2012 2011 CONECT 2013 2003 CONECT 2052 2058 CONECT 2058 2052 2060 CONECT 2059 2061 CONECT 2060 2058 2061 2062 2063 CONECT 2061 2059 2060 2066 CONECT 2062 2060 2064 CONECT 2063 2060 2065 CONECT 2064 2062 2065 CONECT 2065 2063 2064 CONECT 2066 2061 CONECT 2068 2072 CONECT 2072 2068 2073 CONECT 2073 2072 2074 2076 CONECT 2074 2073 2075 2083 CONECT 2075 2074 CONECT 2076 2073 2077 CONECT 2077 2076 2078 2079 CONECT 2078 2077 2080 CONECT 2079 2077 2081 CONECT 2080 2078 2082 CONECT 2081 2079 2082 CONECT 2082 2080 2081 CONECT 2083 2074 2085 CONECT 2084 2086 CONECT 2085 2083 2086 2087 2089 CONECT 2086 2084 2085 2090 CONECT 2087 2085 2088 CONECT 2088 2087 2089 CONECT 2089 2085 2088 CONECT 2090 2086 CONECT 2111 2116 CONECT 2116 2111 2118 CONECT 2117 2119 CONECT 2118 2116 2119 2120 2122 CONECT 2119 2117 2118 2123 CONECT 2120 2118 2121 CONECT 2121 2120 2122 CONECT 2122 2118 2121 CONECT 2123 2119 CONECT 2141 2145 CONECT 2144 2000 CONECT 2145 2141 CONECT 2147 2148 2149 CONECT 2148 2147 CONECT 2149 2147 2150 CONECT 2150 2149 2151 CONECT 2151 2150 2152 CONECT 2152 2151 2153 CONECT 2153 2152 MASTER 567 0 8 16 4 0 0 6 2299 2 65 24 END