HEADER TRANSCRIPTION 29-MAY-25 9V8G TITLE PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH PG08-NL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PG08-NL; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS NUCLEAR RECEPTOR, DE NOVO PEPTIDE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.SIGAL,C.OKADA,T.KATOH,H.SUGA,T.SENGOKU REVDAT 4 03-DEC-25 9V8G 1 JRNL REVDAT 3 19-NOV-25 9V8G 1 JRNL REVDAT 2 12-NOV-25 9V8G 1 JRNL REVDAT 1 05-NOV-25 9V8G 0 JRNL AUTH M.SIGAL,M.EGNER,C.OKADA,D.MERK,T.SENGOKU,T.KATOH,H.SUGA JRNL TITL DE NOVO DISCOVERY OF ALPHA , ALPHA-DISUBSTITUTED ALPHA-AMINO JRNL TITL 2 ACID-CONTAINING ALPHA-HELICAL PEPTIDES AS COMPETITIVE PPAR JRNL TITL 3 GAMMA PPI INHIBITORS. JRNL REF J.AM.CHEM.SOC. V. 147 42607 2025 JRNL REFN ESSN 1520-5126 JRNL PMID 41188059 JRNL DOI 10.1021/JACS.5C13803 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 59694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.350 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1100 - 3.3500 1.00 4248 148 0.1627 0.1707 REMARK 3 2 3.3500 - 2.6600 1.00 4204 141 0.1768 0.1774 REMARK 3 3 2.6600 - 2.3200 1.00 4162 149 0.1603 0.1737 REMARK 3 4 2.3200 - 2.1100 0.99 4149 147 0.1558 0.1449 REMARK 3 5 2.1100 - 1.9600 1.00 4167 148 0.1602 0.1925 REMARK 3 6 1.9600 - 1.8400 0.99 4097 144 0.1951 0.2342 REMARK 3 7 1.8400 - 1.7500 1.00 4113 132 0.1830 0.1959 REMARK 3 8 1.7500 - 1.6700 1.00 4155 155 0.1717 0.1904 REMARK 3 9 1.6700 - 1.6100 1.00 4131 124 0.1556 0.1776 REMARK 3 10 1.6100 - 1.5500 1.00 4135 151 0.1593 0.1711 REMARK 3 11 1.5500 - 1.5100 0.99 4081 147 0.1707 0.1666 REMARK 3 12 1.5100 - 1.4600 1.00 4158 142 0.2032 0.2262 REMARK 3 13 1.4600 - 1.4200 0.99 4115 132 0.2575 0.3122 REMARK 3 14 1.4200 - 1.3900 0.92 3779 140 0.3177 0.3337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.898 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2249 REMARK 3 ANGLE : 1.354 3043 REMARK 3 CHIRALITY : 0.097 357 REMARK 3 PLANARITY : 0.011 384 REMARK 3 DIHEDRAL : 16.622 862 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1298 -9.2046 -6.2297 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.1577 REMARK 3 T33: 0.1510 T12: -0.0343 REMARK 3 T13: -0.0362 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.1548 L22: 2.5787 REMARK 3 L33: 1.3515 L12: -0.2234 REMARK 3 L13: -1.2763 L23: -0.6041 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.3153 S13: 0.0026 REMARK 3 S21: -0.2600 S22: 0.0213 S23: 0.1876 REMARK 3 S31: 0.2627 S32: -0.3573 S33: 0.0565 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1065 -16.4606 -32.0546 REMARK 3 T TENSOR REMARK 3 T11: 0.4521 T22: 0.3971 REMARK 3 T33: 0.1893 T12: -0.0129 REMARK 3 T13: -0.0201 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 5.5941 L22: 4.8244 REMARK 3 L33: 6.6350 L12: 3.2981 REMARK 3 L13: -2.6847 L23: -2.1837 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: 0.7794 S13: 0.1332 REMARK 3 S21: -0.0264 S22: 0.3623 S23: 0.0417 REMARK 3 S31: 0.0564 S32: -0.4554 S33: -0.3993 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8557 -0.2683 -20.8436 REMARK 3 T TENSOR REMARK 3 T11: 0.3022 T22: 0.2070 REMARK 3 T33: 0.1603 T12: 0.0138 REMARK 3 T13: 0.0410 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 4.6958 L22: 1.9524 REMARK 3 L33: 6.1045 L12: -1.7608 REMARK 3 L13: -4.2413 L23: 2.3473 REMARK 3 S TENSOR REMARK 3 S11: 0.0949 S12: 0.5472 S13: -0.1005 REMARK 3 S21: -0.6208 S22: -0.0651 S23: -0.1244 REMARK 3 S31: 0.0055 S32: -0.1969 S33: -0.0214 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 303 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7962 3.6737 -8.5528 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.1285 REMARK 3 T33: 0.0871 T12: 0.0033 REMARK 3 T13: -0.0122 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.3104 L22: 5.2744 REMARK 3 L33: 1.6150 L12: -0.6261 REMARK 3 L13: -0.4288 L23: 0.8861 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.0586 S13: 0.0318 REMARK 3 S21: -0.3052 S22: -0.0133 S23: -0.1319 REMARK 3 S31: -0.0617 S32: 0.0787 S33: -0.0309 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 334 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2663 -13.8924 -20.7401 REMARK 3 T TENSOR REMARK 3 T11: 0.2467 T22: 0.2721 REMARK 3 T33: 0.2062 T12: 0.0377 REMARK 3 T13: 0.0259 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 2.1451 L22: 2.1944 REMARK 3 L33: 7.1889 L12: -0.0083 REMARK 3 L13: -1.1969 L23: 0.1751 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: 0.2330 S13: 0.0021 REMARK 3 S21: -0.2784 S22: -0.0040 S23: -0.2530 REMARK 3 S31: 0.2388 S32: 0.8365 S33: 0.1207 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 378 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8760 -4.2927 1.8938 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.1232 REMARK 3 T33: 0.1206 T12: 0.0094 REMARK 3 T13: -0.0205 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.8677 L22: 3.2364 REMARK 3 L33: 1.0789 L12: 1.2334 REMARK 3 L13: -0.3464 L23: -0.4061 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: -0.1097 S13: -0.0919 REMARK 3 S21: 0.1065 S22: -0.0997 S23: -0.1374 REMARK 3 S31: 0.0214 S32: 0.0740 S33: 0.0417 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 459 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5588 -3.7420 -10.4701 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.2974 REMARK 3 T33: 0.2863 T12: 0.0231 REMARK 3 T13: 0.0447 T23: 0.0720 REMARK 3 L TENSOR REMARK 3 L11: 2.8121 L22: 3.4355 REMARK 3 L33: 7.5000 L12: 1.6793 REMARK 3 L13: -2.0853 L23: -2.2354 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: 0.3648 S13: 0.2529 REMARK 3 S21: -0.4156 S22: -0.0377 S23: -0.3949 REMARK 3 S31: -0.2781 S32: 0.4402 S33: 0.0278 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 460 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9523 7.1400 -22.2291 REMARK 3 T TENSOR REMARK 3 T11: 0.3209 T22: 0.3406 REMARK 3 T33: 0.3123 T12: 0.0130 REMARK 3 T13: 0.1110 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 7.7156 L22: 2.6069 REMARK 3 L33: 3.3711 L12: -0.6312 REMARK 3 L13: -3.0258 L23: 1.7627 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.0428 S13: 0.2558 REMARK 3 S21: -0.4199 S22: -0.0639 S23: -0.7407 REMARK 3 S31: -0.0863 S32: 0.4173 S33: -0.1201 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3495 17.1382 -14.0924 REMARK 3 T TENSOR REMARK 3 T11: 0.2627 T22: 0.2280 REMARK 3 T33: 0.1791 T12: -0.0669 REMARK 3 T13: 0.0588 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 7.8926 L22: 7.7819 REMARK 3 L33: 2.1528 L12: -1.6644 REMARK 3 L13: 0.9963 L23: -0.6991 REMARK 3 S TENSOR REMARK 3 S11: -0.0820 S12: 0.3684 S13: 0.6060 REMARK 3 S21: 0.0923 S22: -0.0474 S23: -0.5863 REMARK 3 S31: -0.7614 S32: 0.7599 S33: 0.1336 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7397 11.8430 -14.4367 REMARK 3 T TENSOR REMARK 3 T11: 0.1896 T22: 0.1811 REMARK 3 T33: 0.1632 T12: 0.0273 REMARK 3 T13: -0.0115 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 6.5027 L22: 6.5917 REMARK 3 L33: 6.1117 L12: 3.3043 REMARK 3 L13: -0.7425 L23: -3.9177 REMARK 3 S TENSOR REMARK 3 S11: 0.1969 S12: 0.3490 S13: -0.1977 REMARK 3 S21: -0.0686 S22: -0.0094 S23: -0.1763 REMARK 3 S31: 0.2476 S32: 0.1800 S33: -0.2689 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9V8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300060004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 42.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8HUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE (PH 7.0) AND 20% REMARK 280 PEG 3,350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.93000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 203 REMARK 465 LEU A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 DTY B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 613 O HOH A 636 1.44 REMARK 500 O HOH A 624 O HOH A 727 1.54 REMARK 500 O HOH A 693 O HOH A 762 1.57 REMARK 500 O HOH A 787 O HOH A 797 1.64 REMARK 500 O HOH A 700 O HOH A 786 1.68 REMARK 500 OE1 GLU A 448 O HOH A 601 1.75 REMARK 500 OE2 GLU A 298 O HOH A 602 1.78 REMARK 500 O HOH A 619 O HOH A 637 1.87 REMARK 500 O HOH A 661 O HOH B 114 1.89 REMARK 500 O HOH A 604 O HOH A 663 2.03 REMARK 500 O HOH B 109 O HOH B 117 2.05 REMARK 500 NZ LYS A 216 O HOH A 603 2.13 REMARK 500 O HOH A 706 O HOH A 798 2.14 REMARK 500 N GLU A 207 O HOH A 604 2.14 REMARK 500 OE1 GLN A 470 O HOH A 605 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 320 CB TYR A 320 CG -0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 462 17.48 54.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 809 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 810 DISTANCE = 6.11 ANGSTROMS DBREF 9V8G A 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 9V8G B 1 20 PDB 9V8G 9V8G 1 20 SEQRES 1 A 275 GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA SEQRES 2 A 275 LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU SEQRES 3 A 275 THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR SEQRES 4 A 275 THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER SEQRES 5 A 275 LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE SEQRES 6 A 275 THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG SEQRES 7 A 275 ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL SEQRES 8 A 275 GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE SEQRES 9 A 275 VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS SEQRES 10 A 275 TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER SEQRES 11 A 275 LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN SEQRES 12 A 275 GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS SEQRES 13 A 275 PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA SEQRES 14 A 275 VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU SEQRES 15 A 275 ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG SEQRES 16 A 275 PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN SEQRES 17 A 275 ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU SEQRES 18 A 275 ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU SEQRES 19 A 275 GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS SEQRES 20 A 275 VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP SEQRES 21 A 275 MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP SEQRES 22 A 275 LEU TYR SEQRES 1 B 20 DTY LYS THR ALA ASN SER VAL AC5 VAL ARG HIS AC5 LEU SEQRES 2 B 20 LEU THR ALA ILE LEU AC5 NH2 HET AC5 B 8 8 HET AC5 B 12 8 HET AC5 B 19 8 HET NH2 B 20 1 HET PEG A 501 7 HETNAM AC5 1-AMINOCYCLOPENTANECARBOXYLIC ACID HETNAM NH2 AMINO GROUP HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN AC5 CYCLO-LEUCINE FORMUL 2 AC5 3(C6 H11 N O2) FORMUL 2 NH2 H2 N FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *230(H2 O) HELIX 1 AA1 GLU A 207 PHE A 226 1 20 HELIX 2 AA2 THR A 229 GLY A 239 1 11 HELIX 3 AA3 ASP A 251 GLU A 259 1 9 HELIX 4 AA4 GLU A 276 LYS A 301 1 26 HELIX 5 AA5 GLY A 305 LEU A 309 5 5 HELIX 6 AA6 ASP A 310 LEU A 333 1 24 HELIX 7 AA7 ARG A 350 SER A 355 1 6 HELIX 8 AA8 PRO A 359 PHE A 363 5 5 HELIX 9 AA9 MET A 364 ALA A 376 1 13 HELIX 10 AB1 ASP A 380 LEU A 393 1 14 HELIX 11 AB2 ASN A 402 HIS A 425 1 24 HELIX 12 AB3 GLN A 430 GLU A 460 1 31 HELIX 13 AB4 HIS A 466 LYS A 474 1 9 HELIX 14 AB5 SER B 6 ARG B 10 1 5 HELIX 15 AB6 HIS B 11 AC5 B 19 1 9 SHEET 1 AA1 4 PHE A 247 ILE A 249 0 SHEET 2 AA1 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 AA1 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 LINK C VAL B 7 N AC5 B 8 1555 1555 1.32 LINK C AC5 B 8 N VAL B 9 1555 1555 1.33 LINK C HIS B 11 N AC5 B 12 1555 1555 1.32 LINK C AC5 B 12 N LEU B 13 1555 1555 1.33 LINK C LEU B 18 N AC5 B 19 1555 1555 1.33 LINK C AC5 B 19 N NH2 B 20 1555 1555 1.42 CISPEP 1 LYS A 358 PRO A 359 0 -1.99 CRYST1 43.820 53.860 66.860 90.00 106.04 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022821 0.000000 0.006559 0.00000 SCALE2 0.000000 0.018567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015562 0.00000 CONECT 2104 2109 CONECT 2109 2104 2111 CONECT 2110 2112 CONECT 2111 2109 2112 2113 2114 CONECT 2112 2110 2111 2117 CONECT 2113 2111 2115 CONECT 2114 2111 2116 CONECT 2115 2113 2116 CONECT 2116 2114 2115 CONECT 2117 2112 CONECT 2137 2145 CONECT 2145 2137 2147 CONECT 2146 2148 CONECT 2147 2145 2148 2149 2150 CONECT 2148 2146 2147 2153 CONECT 2149 2147 2151 CONECT 2150 2147 2152 CONECT 2151 2149 2152 CONECT 2152 2150 2151 CONECT 2153 2148 CONECT 2191 2197 CONECT 2197 2191 2199 CONECT 2198 2200 CONECT 2199 2197 2200 2201 2202 CONECT 2200 2198 2199 2205 CONECT 2201 2199 2203 CONECT 2202 2199 2204 CONECT 2203 2201 2204 CONECT 2204 2202 2203 CONECT 2205 2200 CONECT 2207 2208 2209 CONECT 2208 2207 CONECT 2209 2207 2210 CONECT 2210 2209 2211 CONECT 2211 2210 2212 CONECT 2212 2211 2213 CONECT 2213 2212 MASTER 458 0 5 15 4 0 0 6 2419 2 37 24 END