HEADER TRANSCRIPTION 29-MAY-25 9V8H TITLE PPARGAMMA LIGAND-BINDING DOMAIN IN COMPLEX WITH PG08-NL AND TITLE 2 ROSIGLITAZONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PG08-NL; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS NUCLEAR RECEPTOR, DE NOVO PEPTIDE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.SIGAL,C.OKADA,T.KATOH,H.SUGA,T.SENGOKU REVDAT 4 03-DEC-25 9V8H 1 JRNL REVDAT 3 19-NOV-25 9V8H 1 JRNL REVDAT 2 12-NOV-25 9V8H 1 JRNL REVDAT 1 05-NOV-25 9V8H 0 JRNL AUTH M.SIGAL,M.EGNER,C.OKADA,D.MERK,T.SENGOKU,T.KATOH,H.SUGA JRNL TITL DE NOVO DISCOVERY OF ALPHA , ALPHA-DISUBSTITUTED ALPHA-AMINO JRNL TITL 2 ACID-CONTAINING ALPHA-HELICAL PEPTIDES AS COMPETITIVE PPAR JRNL TITL 3 GAMMA PPI INHIBITORS. JRNL REF J.AM.CHEM.SOC. V. 147 42607 2025 JRNL REFN ESSN 1520-5126 JRNL PMID 41188059 JRNL DOI 10.1021/JACS.5C13803 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1982 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4271 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.4320 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.4370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.986 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2230 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2216 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3011 ; 2.057 ; 1.835 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5117 ; 0.673 ; 1.750 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 270 ; 5.229 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ; 8.831 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;12.501 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2495 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 472 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1080 ; 1.957 ; 0.923 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1079 ; 1.952 ; 0.921 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1350 ; 3.047 ; 1.613 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1351 ; 3.048 ; 1.613 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1150 ; 3.381 ; 1.398 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1151 ; 3.379 ; 1.399 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1662 ; 5.239 ; 2.350 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2649 ; 8.198 ;13.290 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2564 ; 8.084 ;11.440 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 207 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3415 -5.7010 0.3038 REMARK 3 T TENSOR REMARK 3 T11: 0.1705 T22: 0.1364 REMARK 3 T33: 0.1478 T12: -0.0090 REMARK 3 T13: 0.0150 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.4784 L22: 0.4519 REMARK 3 L33: 0.6266 L12: 0.3290 REMARK 3 L13: -0.3062 L23: -0.5097 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: 0.0721 S13: 0.0300 REMARK 3 S21: 0.0586 S22: 0.0248 S23: 0.0972 REMARK 3 S31: -0.0349 S32: -0.0295 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7907 -15.4659 -15.4652 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.1577 REMARK 3 T33: 0.1038 T12: -0.0642 REMARK 3 T13: -0.0119 T23: -0.0376 REMARK 3 L TENSOR REMARK 3 L11: 0.6476 L22: 1.9251 REMARK 3 L33: 2.6822 L12: 0.3513 REMARK 3 L13: -1.2911 L23: -0.3000 REMARK 3 S TENSOR REMARK 3 S11: -0.1811 S12: 0.1608 S13: -0.0403 REMARK 3 S21: -0.1549 S22: 0.0784 S23: -0.1086 REMARK 3 S31: 0.3430 S32: -0.3392 S33: 0.1027 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 239 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2275 -17.8839 -31.9441 REMARK 3 T TENSOR REMARK 3 T11: 0.2951 T22: 0.4311 REMARK 3 T33: 0.0386 T12: -0.1206 REMARK 3 T13: 0.0072 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.3970 L22: 1.2958 REMARK 3 L33: 3.6743 L12: 0.5681 REMARK 3 L13: 0.4751 L23: 1.9030 REMARK 3 S TENSOR REMARK 3 S11: -0.1401 S12: 0.3450 S13: 0.0117 REMARK 3 S21: -0.0678 S22: 0.2574 S23: -0.0246 REMARK 3 S31: 0.1281 S32: -0.1530 S33: -0.1173 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 277 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7162 -1.1707 -21.6390 REMARK 3 T TENSOR REMARK 3 T11: 0.2282 T22: 0.1288 REMARK 3 T33: 0.1039 T12: 0.0095 REMARK 3 T13: 0.0112 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.0647 L22: 0.6981 REMARK 3 L33: 1.5148 L12: -0.5044 REMARK 3 L13: -1.1847 L23: 0.6535 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: 0.0277 S13: 0.0441 REMARK 3 S21: -0.2007 S22: -0.0047 S23: 0.0367 REMARK 3 S31: -0.0679 S32: -0.0470 S33: -0.0536 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 303 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0549 3.2998 -8.5949 REMARK 3 T TENSOR REMARK 3 T11: 0.1751 T22: 0.1206 REMARK 3 T33: 0.1379 T12: 0.0032 REMARK 3 T13: 0.0049 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.1394 L22: 0.6391 REMARK 3 L33: 0.4939 L12: -0.1235 REMARK 3 L13: -0.1351 L23: 0.2086 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0094 S13: 0.0470 REMARK 3 S21: -0.0636 S22: 0.0082 S23: 0.0001 REMARK 3 S31: 0.0101 S32: 0.0148 S33: -0.0106 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 334 A 377 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1127 -14.5180 -20.4867 REMARK 3 T TENSOR REMARK 3 T11: 0.2222 T22: 0.1106 REMARK 3 T33: 0.1149 T12: 0.0243 REMARK 3 T13: 0.0274 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.6875 L22: 0.2007 REMARK 3 L33: 1.6591 L12: -0.0201 REMARK 3 L13: -0.2211 L23: 0.0421 REMARK 3 S TENSOR REMARK 3 S11: -0.0663 S12: 0.0301 S13: -0.0421 REMARK 3 S21: -0.0887 S22: -0.0172 S23: -0.0827 REMARK 3 S31: 0.1854 S32: 0.1103 S33: 0.0835 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 378 A 430 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7649 -3.9974 1.8513 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.1243 REMARK 3 T33: 0.1411 T12: -0.0051 REMARK 3 T13: -0.0033 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.3629 L22: 0.9727 REMARK 3 L33: 0.1296 L12: 0.3965 REMARK 3 L13: -0.1285 L23: -0.2570 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: -0.0353 S13: 0.0002 REMARK 3 S21: 0.0223 S22: -0.0080 S23: -0.0168 REMARK 3 S31: 0.0170 S32: 0.0375 S33: -0.0088 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 431 A 459 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5549 -4.6676 -10.4790 REMARK 3 T TENSOR REMARK 3 T11: 0.1566 T22: 0.1504 REMARK 3 T33: 0.1571 T12: 0.0131 REMARK 3 T13: 0.0059 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.9663 L22: 0.7476 REMARK 3 L33: 1.8247 L12: 0.7556 REMARK 3 L13: -0.2751 L23: -0.7240 REMARK 3 S TENSOR REMARK 3 S11: -0.0986 S12: 0.0435 S13: -0.0452 REMARK 3 S21: -0.0243 S22: 0.0039 S23: -0.0735 REMARK 3 S31: -0.0448 S32: 0.1255 S33: 0.0947 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 460 A 477 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0223 6.6733 -21.4791 REMARK 3 T TENSOR REMARK 3 T11: 0.3099 T22: 0.1150 REMARK 3 T33: 0.2132 T12: -0.0300 REMARK 3 T13: 0.1453 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.4834 L22: 0.3913 REMARK 3 L33: 1.6548 L12: 0.9090 REMARK 3 L13: -0.4610 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: 0.1265 S12: 0.0321 S13: 0.1093 REMARK 3 S21: -0.0634 S22: 0.0489 S23: -0.0528 REMARK 3 S31: -0.0841 S32: 0.0588 S33: -0.1753 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): -8.0484 16.7422 -14.1167 REMARK 3 T TENSOR REMARK 3 T11: 0.2368 T22: 0.0871 REMARK 3 T33: 0.1400 T12: -0.0284 REMARK 3 T13: 0.0698 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 3.0662 L22: 2.7106 REMARK 3 L33: 5.9220 L12: 0.5764 REMARK 3 L13: 1.4000 L23: 1.5264 REMARK 3 S TENSOR REMARK 3 S11: 0.2068 S12: 0.2812 S13: 0.2176 REMARK 3 S21: -0.0440 S22: -0.0354 S23: -0.0906 REMARK 3 S31: -0.4222 S32: 0.2201 S33: -0.1715 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 14 B 18 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9808 11.0102 -14.5564 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.1303 REMARK 3 T33: 0.1216 T12: 0.0081 REMARK 3 T13: 0.0192 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 3.7657 L22: 2.2535 REMARK 3 L33: 1.9288 L12: -1.5714 REMARK 3 L13: -1.4375 L23: 1.1260 REMARK 3 S TENSOR REMARK 3 S11: 0.2255 S12: -0.0046 S13: -0.0621 REMARK 3 S21: -0.1427 S22: -0.0502 S23: -0.0241 REMARK 3 S31: -0.0490 S32: -0.0513 S33: -0.1753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9V8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300060008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59561 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 41.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 70.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8HUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE (PH 7.5 TO 8.0) REMARK 280 AND 15 TO 20% PEG 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.73500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 203 REMARK 465 LEU A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 THR A 242 REMARK 465 ASP A 243 REMARK 465 LYS A 244 REMARK 465 ASP A 260 REMARK 465 LYS A 261 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 ASP A 462 REMARK 465 DTY B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ASN B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 358 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 PGE A 502 O HOH A 601 1.65 REMARK 500 O HOH A 615 O HOH A 658 1.82 REMARK 500 O HOH A 776 O HOH A 780 1.96 REMARK 500 O SER A 464 O HOH A 602 1.97 REMARK 500 OH TYR A 477 O HOH A 603 1.98 REMARK 500 O HOH A 614 O HOH A 638 2.02 REMARK 500 O HOH A 801 O HOH A 823 2.02 REMARK 500 O HOH A 714 O HOH A 786 2.10 REMARK 500 O HOH B 114 O HOH B 115 2.10 REMARK 500 O HOH A 729 O HOH B 111 2.11 REMARK 500 OE1 GLU A 259 O HOH A 604 2.12 REMARK 500 O HOH A 650 O HOH A 778 2.12 REMARK 500 O HOH A 721 O HOH A 785 2.14 REMARK 500 O HOH A 788 O HOH A 825 2.15 REMARK 500 O HOH A 750 O HOH A 757 2.16 REMARK 500 OE2 GLU A 298 O HOH A 605 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 727 O HOH A 752 2445 1.83 REMARK 500 O HOH A 642 O HOH A 805 2445 2.08 REMARK 500 O HOH A 634 O HOH B 113 2545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR A 477 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 AC5 B 19 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 357 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 116 DISTANCE = 7.79 ANGSTROMS DBREF 9V8H A 203 477 UNP P37231 PPARG_HUMAN 231 505 DBREF 9V8H B 1 20 PDB 9V8H 9V8H 1 20 SEQRES 1 A 275 GLN LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA SEQRES 2 A 275 LYS HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU SEQRES 3 A 275 THR LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR SEQRES 4 A 275 THR ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER SEQRES 5 A 275 LEU MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE SEQRES 6 A 275 THR PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG SEQRES 7 A 275 ILE PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL SEQRES 8 A 275 GLN GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE SEQRES 9 A 275 VAL ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS SEQRES 10 A 275 TYR GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER SEQRES 11 A 275 LEU MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN SEQRES 12 A 275 GLY PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS SEQRES 13 A 275 PRO PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA SEQRES 14 A 275 VAL LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU SEQRES 15 A 275 ALA ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG SEQRES 16 A 275 PRO GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN SEQRES 17 A 275 ASP ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU SEQRES 18 A 275 ASN HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU SEQRES 19 A 275 GLN LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS SEQRES 20 A 275 VAL GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP SEQRES 21 A 275 MET SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP SEQRES 22 A 275 LEU TYR SEQRES 1 B 20 DTY LYS THR ALA ASN SER VAL AC5 VAL ARG HIS AC5 LEU SEQRES 2 B 20 LEU THR ALA ILE LEU AC5 NH2 HET AC5 B 8 8 HET AC5 B 12 8 HET AC5 B 19 8 HET NH2 B 20 1 HET BRL A 501 25 HET PGE A 502 10 HET PEG A 503 7 HETNAM AC5 1-AMINOCYCLOPENTANECARBOXYLIC ACID HETNAM NH2 AMINO GROUP HETNAM BRL 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2- HETNAM 2 BRL PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN AC5 CYCLO-LEUCINE HETSYN BRL BRL49653; ROSIGLITAZONE FORMUL 2 AC5 3(C6 H11 N O2) FORMUL 2 NH2 H2 N FORMUL 3 BRL C18 H19 N3 O3 S FORMUL 4 PGE C6 H14 O4 FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *243(H2 O) HELIX 1 AA1 GLU A 207 PHE A 226 1 20 HELIX 2 AA2 THR A 229 GLY A 239 1 11 HELIX 3 AA3 ASP A 251 GLU A 259 1 9 HELIX 4 AA4 VAL A 277 SER A 302 1 26 HELIX 5 AA5 GLY A 305 LEU A 309 5 5 HELIX 6 AA6 ASP A 310 LEU A 333 1 24 HELIX 7 AA7 SER A 342 GLY A 344 5 3 HELIX 8 AA8 ARG A 350 SER A 355 1 6 HELIX 9 AA9 PRO A 359 PHE A 363 5 5 HELIX 10 AB1 MET A 364 ALA A 376 1 13 HELIX 11 AB2 ASP A 380 LEU A 393 1 14 HELIX 12 AB3 ASN A 402 HIS A 425 1 24 HELIX 13 AB4 GLN A 430 GLU A 460 1 31 HELIX 14 AB5 HIS A 466 LYS A 474 1 9 HELIX 15 AB6 VAL B 7 ARG B 10 5 4 HELIX 16 AB7 HIS B 11 AC5 B 19 1 9 SHEET 1 AA1 4 PHE A 247 ILE A 249 0 SHEET 2 AA1 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 AA1 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 LINK C VAL B 7 N AC5 B 8 1555 1555 1.34 LINK C AC5 B 8 N VAL B 9 1555 1555 1.34 LINK C HIS B 11 N AC5 B 12 1555 1555 1.32 LINK C AC5 B 12 N LEU B 13 1555 1555 1.34 LINK C LEU B 18 N AC5 B 19 1555 1555 1.36 LINK C AC5 B 19 N NH2 B 20 1555 1555 1.40 CISPEP 1 LYS A 358 PRO A 359 0 -5.12 CRYST1 43.690 53.470 66.830 90.00 106.50 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022889 0.000000 0.006780 0.00000 SCALE2 0.000000 0.018702 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015606 0.00000 CONECT 2049 2054 CONECT 2054 2049 2056 CONECT 2055 2057 CONECT 2056 2054 2057 2058 2059 CONECT 2057 2055 2056 2062 CONECT 2058 2056 2060 CONECT 2059 2056 2061 CONECT 2060 2058 2061 CONECT 2061 2059 2060 CONECT 2062 2057 CONECT 2082 2090 CONECT 2090 2082 2092 CONECT 2091 2093 CONECT 2092 2090 2093 2094 2095 CONECT 2093 2091 2092 2098 CONECT 2094 2092 2096 CONECT 2095 2092 2097 CONECT 2096 2094 2097 CONECT 2097 2095 2096 CONECT 2098 2093 CONECT 2136 2142 CONECT 2142 2136 2144 CONECT 2143 2145 CONECT 2144 2142 2145 2146 2147 CONECT 2145 2143 2144 2150 CONECT 2146 2144 2148 CONECT 2147 2144 2149 CONECT 2148 2146 2149 CONECT 2149 2147 2148 CONECT 2150 2145 CONECT 2152 2159 2161 CONECT 2153 2159 CONECT 2154 2160 CONECT 2155 2166 2169 CONECT 2156 2159 2160 CONECT 2157 2170 2171 2172 CONECT 2158 2172 2173 CONECT 2159 2152 2153 2156 CONECT 2160 2154 2156 2161 CONECT 2161 2152 2160 2162 CONECT 2162 2161 2163 CONECT 2163 2162 2164 2168 CONECT 2164 2163 2165 CONECT 2165 2164 2166 CONECT 2166 2155 2165 2167 CONECT 2167 2166 2168 CONECT 2168 2163 2167 CONECT 2169 2155 2170 CONECT 2170 2157 2169 CONECT 2171 2157 CONECT 2172 2157 2158 2176 CONECT 2173 2158 2174 CONECT 2174 2173 2175 CONECT 2175 2174 2176 CONECT 2176 2172 2175 CONECT 2177 2178 2179 CONECT 2178 2177 CONECT 2179 2177 2180 CONECT 2180 2179 2181 CONECT 2181 2180 2182 CONECT 2182 2181 2186 CONECT 2183 2184 CONECT 2184 2183 2185 CONECT 2185 2184 2186 CONECT 2186 2182 2185 CONECT 2187 2188 2189 CONECT 2188 2187 CONECT 2189 2187 2190 CONECT 2190 2189 2191 CONECT 2191 2190 2192 CONECT 2192 2191 2193 CONECT 2193 2192 MASTER 570 0 7 16 4 0 0 6 2401 2 72 24 END