HEADER MEMBRANE PROTEIN 09-JUN-25 9VDQ TITLE CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB N49K MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIARCOBACTER BUTZLERI (STRAIN RM4018); SOURCE 3 ORGANISM_TAXID: 367737; SOURCE 4 GENE: ABU_1752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ION CHANNEL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.IRIE REVDAT 1 20-MAY-26 9VDQ 0 JRNL AUTH K.IRIE,S.HAN,S.APPLEWHITE,Y.K.MAEDA,J.VANCE,S.WANG JRNL TITL THE STRUCTURAL DYNAMICS AND MOLECULAR COUPLING IN THE SLOW JRNL TITL 2 INACTIVATION OF A PROKARYOTIC VOLTAGE-GATED SODIUM CHANNEL JRNL REF BIORXIV 2026 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2025.08.14.670348 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 14807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9300 - 8.4000 0.96 751 84 0.2616 0.3616 REMARK 3 2 8.3900 - 6.6700 1.00 720 79 0.2795 0.2550 REMARK 3 3 6.6700 - 5.8300 1.00 708 79 0.3209 0.2802 REMARK 3 4 5.8300 - 5.3000 1.00 698 78 0.2602 0.3136 REMARK 3 5 5.3000 - 4.9200 1.00 702 78 0.2235 0.2819 REMARK 3 6 4.9200 - 4.6300 1.00 698 77 0.2174 0.2971 REMARK 3 7 4.6300 - 4.4000 1.00 688 76 0.2060 0.2377 REMARK 3 8 4.4000 - 4.2100 1.00 690 77 0.2260 0.3193 REMARK 3 9 4.2100 - 4.0500 1.00 686 76 0.2274 0.2842 REMARK 3 10 4.0500 - 3.9100 1.00 685 77 0.2163 0.2649 REMARK 3 11 3.9000 - 3.7800 1.00 687 76 0.2190 0.2821 REMARK 3 12 3.7800 - 3.6800 1.00 678 76 0.2055 0.2356 REMARK 3 13 3.6800 - 3.5800 1.00 689 77 0.1991 0.2959 REMARK 3 14 3.5800 - 3.4900 1.00 672 74 0.2254 0.2631 REMARK 3 15 3.4900 - 3.4100 1.00 678 75 0.2439 0.2798 REMARK 3 16 3.4100 - 3.3400 1.00 680 75 0.2473 0.2558 REMARK 3 17 3.3400 - 3.2700 0.97 653 73 0.2616 0.2923 REMARK 3 18 3.2700 - 3.2100 0.88 592 66 0.2825 0.3140 REMARK 3 19 3.2100 - 3.1500 0.76 521 58 0.2783 0.3546 REMARK 3 20 3.1500 - 3.1000 0.66 451 49 0.3070 0.3375 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.391 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.379 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2314 REMARK 3 ANGLE : 1.453 3086 REMARK 3 CHIRALITY : 0.075 341 REMARK 3 PLANARITY : 0.008 325 REMARK 3 DIHEDRAL : 25.067 986 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.6638 -16.8019 25.6959 REMARK 3 T TENSOR REMARK 3 T11: 0.5606 T22: 0.3423 REMARK 3 T33: 0.4085 T12: 0.1353 REMARK 3 T13: -0.0453 T23: 0.1453 REMARK 3 L TENSOR REMARK 3 L11: 4.2911 L22: 1.5407 REMARK 3 L33: 3.0242 L12: -0.6254 REMARK 3 L13: 1.3371 L23: -0.1064 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: -0.2839 S13: -0.3318 REMARK 3 S21: 0.4032 S22: -0.0940 S23: -0.3980 REMARK 3 S31: 0.7975 S32: 0.5407 S33: 0.0553 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9VDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1300060376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 300 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15361 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 43.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9%-11% PEG MME 2000, 100MM SODIUM REMARK 280 CHLORIDE, 100MM MAGNESIUM NITRATE, 25MM CADMIUM NITRATE, 100MM REMARK 280 TRIS-HCL, PH 8.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.59150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.59150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 100.70500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 63.59150 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 63.59150 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 100.70500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.59150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 63.59150 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 100.70500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 63.59150 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.59150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 100.70500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 63.59150 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.59150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 100.70500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.59150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 63.59150 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 100.70500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 63.59150 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 63.59150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 100.70500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.59150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.59150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.70500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 41060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A1302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1407 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1228 REMARK 465 GLU A 1229 REMARK 465 GLN A 1230 REMARK 465 HIS A 1231 REMARK 465 ILE A 1232 REMARK 465 ILE A 1233 REMARK 465 ASP A 1234 REMARK 465 GLU A 1235 REMARK 465 VAL A 1236 REMARK 465 GLN A 1237 REMARK 465 SER A 1238 REMARK 465 HIS A 1239 REMARK 465 GLU A 1240 REMARK 465 ASP A 1241 REMARK 465 ASN A 1242 REMARK 465 ILE A 1243 REMARK 465 ASN A 1244 REMARK 465 ASN A 1245 REMARK 465 GLU A 1246 REMARK 465 ILE A 1247 REMARK 465 ILE A 1248 REMARK 465 LYS A 1249 REMARK 465 LEU A 1250 REMARK 465 ARG A 1251 REMARK 465 GLU A 1252 REMARK 465 GLU A 1253 REMARK 465 ILE A 1254 REMARK 465 VAL A 1255 REMARK 465 GLU A 1256 REMARK 465 LEU A 1257 REMARK 465 LYS A 1258 REMARK 465 GLU A 1259 REMARK 465 LEU A 1260 REMARK 465 ILE A 1261 REMARK 465 LYS A 1262 REMARK 465 THR A 1263 REMARK 465 SER A 1264 REMARK 465 LEU A 1265 REMARK 465 LYS A 1266 REMARK 465 ASN A 1267 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 1165 C5 PX4 A 1310 3555 1.38 REMARK 500 OE2 GLU A 1154 C4 PX4 A 1312 7555 1.38 REMARK 500 O GLY A 1161 C5 PX4 A 1311 4555 1.38 REMARK 500 C22 PX4 A 1309 C22 PX4 A 1311 4555 1.49 REMARK 500 C2 PX4 A 1308 C4 PX4 A 1310 2555 1.49 REMARK 500 CD GLU A 1165 C5 PX4 A 1310 3555 1.89 REMARK 500 O ARG A 1155 NH2 ARG A 1155 7555 1.89 REMARK 500 O HOH A 1408 O HOH A 1408 4555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A1041 16.16 -142.16 REMARK 500 ILE A1183 -59.58 -121.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1407 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH A1408 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A1409 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A1410 DISTANCE = 8.43 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1N7 A 1304 DBREF 9VDQ A 1001 1267 UNP A8EVM5 A8EVM5_ALIB4 1 267 SEQADV 9VDQ GLY A 999 UNP A8EVM5 EXPRESSION TAG SEQADV 9VDQ SER A 1000 UNP A8EVM5 EXPRESSION TAG SEQADV 9VDQ LYS A 1049 UNP A8EVM5 ASN 49 ENGINEERED MUTATION SEQRES 1 A 269 GLY SER MET TYR LEU ARG ILE THR ASN ILE VAL GLU SER SEQRES 2 A 269 SER PHE PHE THR LYS PHE ILE ILE TYR LEU ILE VAL LEU SEQRES 3 A 269 ASN GLY ILE THR MET GLY LEU GLU THR SER LYS THR PHE SEQRES 4 A 269 MET GLN SER PHE GLY VAL TYR THR THR LEU PHE LYS GLN SEQRES 5 A 269 ILE VAL ILE THR ILE PHE THR ILE GLU ILE ILE LEU ARG SEQRES 6 A 269 ILE TYR VAL HIS ARG ILE SER PHE PHE LYS ASP PRO TRP SEQRES 7 A 269 SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SER LEU VAL SEQRES 8 A 269 PRO THR SER SER GLY PHE GLU ILE LEU ARG VAL LEU ARG SEQRES 9 A 269 VAL LEU ARG LEU PHE ARG LEU VAL THR ALA VAL PRO GLN SEQRES 10 A 269 MET ARG LYS ILE VAL SER ALA LEU ILE SER VAL ILE PRO SEQRES 11 A 269 GLY MET LEU SER VAL ILE ALA LEU MET THR LEU PHE PHE SEQRES 12 A 269 TYR ILE PHE ALA ILE MET ALA THR GLN LEU PHE GLY GLU SEQRES 13 A 269 ARG PHE PRO GLU TRP PHE GLY THR LEU GLY GLU SER PHE SEQRES 14 A 269 TYR THR LEU PHE GLN VAL MET THR LEU GLU SER TRP SER SEQRES 15 A 269 MET GLY ILE VAL ARG PRO LEU MET GLU VAL TYR PRO TYR SEQRES 16 A 269 ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE VAL VAL THR SEQRES 17 A 269 PHE VAL MET ILE ASN LEU VAL VAL ALA ILE ILE VAL ASP SEQRES 18 A 269 ALA MET ALA ILE LEU ASN GLN LYS GLU GLU GLN HIS ILE SEQRES 19 A 269 ILE ASP GLU VAL GLN SER HIS GLU ASP ASN ILE ASN ASN SEQRES 20 A 269 GLU ILE ILE LYS LEU ARG GLU GLU ILE VAL GLU LEU LYS SEQRES 21 A 269 GLU LEU ILE LYS THR SER LEU LYS ASN HET NA A1301 1 HET NA A1302 1 HET NA A1303 1 HET 1N7 A1304 30 HET PX4 A1305 46 HET PX4 A1306 46 HET PX4 A1307 46 HET PX4 A1308 46 HET PX4 A1309 46 HET PX4 A1310 46 HET PX4 A1311 46 HET PX4 A1312 46 HETNAM NA SODIUM ION HETNAM 1N7 CHAPSO HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETSYN 1N7 2-HYDROXY-N,N-DIMETHYL-3-SULFO-N-(3-{[(3BETA,5BETA, HETSYN 2 1N7 7BETA,12BETA)-3,7,12-TRIHYDROXY-24-OXOCHOLAN-24- HETSYN 3 1N7 YL]AMINO}PROPYL)PROPAN-1-AMINIUM FORMUL 2 NA 3(NA 1+) FORMUL 5 1N7 C32 H59 N2 O8 S 1+ FORMUL 6 PX4 8(C36 H73 N O8 P 1+) FORMUL 14 HOH *10(H2 O) HELIX 1 AA1 GLY A 999 GLU A 1010 1 12 HELIX 2 AA2 SER A 1011 GLU A 1032 1 22 HELIX 3 AA3 SER A 1034 HIS A 1067 1 34 HELIX 4 AA4 ILE A 1069 LYS A 1073 5 5 HELIX 5 AA5 ASP A 1074 VAL A 1089 1 16 HELIX 6 AA6 PRO A 1090 GLY A 1094 5 5 HELIX 7 AA7 GLU A 1096 ARG A 1102 1 7 HELIX 8 AA8 VAL A 1103 LEU A 1106 5 4 HELIX 9 AA9 PHE A 1107 VAL A 1113 1 7 HELIX 10 AB1 VAL A 1113 VAL A 1126 1 14 HELIX 11 AB2 ILE A 1127 GLY A 1129 5 3 HELIX 12 AB3 MET A 1130 GLY A 1153 1 24 HELIX 13 AB4 PHE A 1156 GLY A 1161 1 6 HELIX 14 AB5 THR A 1162 LEU A 1176 1 15 HELIX 15 AB6 ILE A 1183 GLU A 1189 1 7 HELIX 16 AB7 VAL A 1190 TYR A 1193 5 4 HELIX 17 AB8 ALA A 1194 LYS A 1227 1 34 LINK NA NA A1303 O HOH A1410 1555 3555 3.11 CRYST1 127.183 127.183 201.410 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007863 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007863 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004965 0.00000 CONECT 1875 1876 1886 CONECT 1876 1875 1885 1889 1893 CONECT 1877 1878 1893 CONECT 1878 1877 1879 1903 CONECT 1879 1878 1880 1883 1884 CONECT 1880 1879 1881 1892 CONECT 1881 1880 1882 CONECT 1882 1881 1883 CONECT 1883 1879 1882 1894 CONECT 1884 1879 CONECT 1885 1876 CONECT 1886 1875 1887 CONECT 1887 1886 1888 1901 CONECT 1888 1887 1889 CONECT 1889 1876 1888 1890 CONECT 1890 1889 1891 CONECT 1891 1890 1892 1902 CONECT 1892 1880 1891 1893 CONECT 1893 1876 1877 1892 CONECT 1894 1883 1895 1896 CONECT 1895 1894 CONECT 1896 1894 1897 CONECT 1897 1896 1898 CONECT 1898 1897 1899 1900 CONECT 1899 1898 1904 CONECT 1900 1898 CONECT 1901 1887 CONECT 1902 1891 CONECT 1903 1878 CONECT 1904 1899 CONECT 1905 1907 CONECT 1906 1907 CONECT 1907 1905 1906 1908 1915 CONECT 1908 1907 1909 CONECT 1909 1908 1910 CONECT 1910 1909 1911 CONECT 1911 1910 1912 1913 1914 CONECT 1912 1911 CONECT 1913 1911 CONECT 1914 1911 CONECT 1915 1907 1916 CONECT 1916 1915 1917 CONECT 1917 1916 1918 1935 CONECT 1918 1917 1919 CONECT 1919 1918 1920 CONECT 1920 1919 1921 1922 CONECT 1921 1920 CONECT 1922 1920 1923 CONECT 1923 1922 1924 CONECT 1924 1923 1925 CONECT 1925 1924 1926 CONECT 1926 1925 1927 CONECT 1927 1926 1928 CONECT 1928 1927 1929 CONECT 1929 1928 1930 CONECT 1930 1929 1931 CONECT 1931 1930 1932 CONECT 1932 1931 1933 CONECT 1933 1932 1934 CONECT 1934 1933 CONECT 1935 1917 1936 CONECT 1936 1935 1937 1938 CONECT 1937 1936 CONECT 1938 1936 1939 CONECT 1939 1938 1940 CONECT 1940 1939 1941 CONECT 1941 1940 1942 CONECT 1942 1941 1943 CONECT 1943 1942 1944 CONECT 1944 1943 1945 CONECT 1945 1944 1946 CONECT 1946 1945 1947 CONECT 1947 1946 1948 CONECT 1948 1947 1949 CONECT 1949 1948 1950 CONECT 1950 1949 CONECT 1951 1953 CONECT 1952 1953 CONECT 1953 1951 1952 1954 1961 CONECT 1954 1953 1955 CONECT 1955 1954 1956 CONECT 1956 1955 1957 CONECT 1957 1956 1958 1959 1960 CONECT 1958 1957 CONECT 1959 1957 CONECT 1960 1957 CONECT 1961 1953 1962 CONECT 1962 1961 1963 CONECT 1963 1962 1964 1981 CONECT 1964 1963 1965 CONECT 1965 1964 1966 CONECT 1966 1965 1967 1968 CONECT 1967 1966 CONECT 1968 1966 1969 CONECT 1969 1968 1970 CONECT 1970 1969 1971 CONECT 1971 1970 1972 CONECT 1972 1971 1973 CONECT 1973 1972 1974 CONECT 1974 1973 1975 CONECT 1975 1974 1976 CONECT 1976 1975 1977 CONECT 1977 1976 1978 CONECT 1978 1977 1979 CONECT 1979 1978 1980 CONECT 1980 1979 CONECT 1981 1963 1982 CONECT 1982 1981 1983 1984 CONECT 1983 1982 CONECT 1984 1982 1985 CONECT 1985 1984 1986 CONECT 1986 1985 1987 CONECT 1987 1986 1988 CONECT 1988 1987 1989 CONECT 1989 1988 1990 CONECT 1990 1989 1991 CONECT 1991 1990 1992 CONECT 1992 1991 1993 CONECT 1993 1992 1994 CONECT 1994 1993 1995 CONECT 1995 1994 1996 CONECT 1996 1995 CONECT 1997 1999 CONECT 1998 1999 CONECT 1999 1997 1998 2000 2007 CONECT 2000 1999 2001 CONECT 2001 2000 2002 CONECT 2002 2001 2003 CONECT 2003 2002 2004 2005 2006 CONECT 2004 2003 CONECT 2005 2003 CONECT 2006 2003 CONECT 2007 1999 2008 CONECT 2008 2007 2009 CONECT 2009 2008 2010 2027 CONECT 2010 2009 2011 CONECT 2011 2010 2012 CONECT 2012 2011 2013 2014 CONECT 2013 2012 CONECT 2014 2012 2015 CONECT 2015 2014 2016 CONECT 2016 2015 2017 CONECT 2017 2016 2018 CONECT 2018 2017 2019 CONECT 2019 2018 2020 CONECT 2020 2019 2021 CONECT 2021 2020 2022 CONECT 2022 2021 2023 CONECT 2023 2022 2024 CONECT 2024 2023 2025 CONECT 2025 2024 2026 CONECT 2026 2025 CONECT 2027 2009 2028 CONECT 2028 2027 2029 2030 CONECT 2029 2028 CONECT 2030 2028 2031 CONECT 2031 2030 2032 CONECT 2032 2031 2033 CONECT 2033 2032 2034 CONECT 2034 2033 2035 CONECT 2035 2034 2036 CONECT 2036 2035 2037 CONECT 2037 2036 2038 CONECT 2038 2037 2039 CONECT 2039 2038 2040 CONECT 2040 2039 2041 CONECT 2041 2040 2042 CONECT 2042 2041 CONECT 2043 2045 CONECT 2044 2045 CONECT 2045 2043 2044 2046 2053 CONECT 2046 2045 2047 CONECT 2047 2046 2048 CONECT 2048 2047 2049 CONECT 2049 2048 2050 2051 2052 CONECT 2050 2049 CONECT 2051 2049 CONECT 2052 2049 CONECT 2053 2045 2054 CONECT 2054 2053 2055 CONECT 2055 2054 2056 2073 CONECT 2056 2055 2057 CONECT 2057 2056 2058 CONECT 2058 2057 2059 2060 CONECT 2059 2058 CONECT 2060 2058 2061 CONECT 2061 2060 2062 CONECT 2062 2061 2063 CONECT 2063 2062 2064 CONECT 2064 2063 2065 CONECT 2065 2064 2066 CONECT 2066 2065 2067 CONECT 2067 2066 2068 CONECT 2068 2067 2069 CONECT 2069 2068 2070 CONECT 2070 2069 2071 CONECT 2071 2070 2072 CONECT 2072 2071 CONECT 2073 2055 2074 CONECT 2074 2073 2075 2076 CONECT 2075 2074 CONECT 2076 2074 2077 CONECT 2077 2076 2078 CONECT 2078 2077 2079 CONECT 2079 2078 2080 CONECT 2080 2079 2081 CONECT 2081 2080 2082 CONECT 2082 2081 2083 CONECT 2083 2082 2084 CONECT 2084 2083 2085 CONECT 2085 2084 2086 CONECT 2086 2085 2087 CONECT 2087 2086 2088 CONECT 2088 2087 CONECT 2089 2091 CONECT 2090 2091 CONECT 2091 2089 2090 2092 2099 CONECT 2092 2091 2093 CONECT 2093 2092 2094 CONECT 2094 2093 2095 CONECT 2095 2094 2096 2097 2098 CONECT 2096 2095 CONECT 2097 2095 CONECT 2098 2095 CONECT 2099 2091 2100 CONECT 2100 2099 2101 CONECT 2101 2100 2102 2119 CONECT 2102 2101 2103 CONECT 2103 2102 2104 CONECT 2104 2103 2105 2106 CONECT 2105 2104 CONECT 2106 2104 2107 CONECT 2107 2106 2108 CONECT 2108 2107 2109 CONECT 2109 2108 2110 CONECT 2110 2109 2111 CONECT 2111 2110 2112 CONECT 2112 2111 2113 CONECT 2113 2112 2114 CONECT 2114 2113 2115 CONECT 2115 2114 2116 CONECT 2116 2115 2117 CONECT 2117 2116 2118 CONECT 2118 2117 CONECT 2119 2101 2120 CONECT 2120 2119 2121 2122 CONECT 2121 2120 CONECT 2122 2120 2123 CONECT 2123 2122 2124 CONECT 2124 2123 2125 CONECT 2125 2124 2126 CONECT 2126 2125 2127 CONECT 2127 2126 2128 CONECT 2128 2127 2129 CONECT 2129 2128 2130 CONECT 2130 2129 2131 CONECT 2131 2130 2132 CONECT 2132 2131 2133 CONECT 2133 2132 2134 CONECT 2134 2133 CONECT 2135 2137 CONECT 2136 2137 CONECT 2137 2135 2136 2138 2145 CONECT 2138 2137 2139 CONECT 2139 2138 2140 CONECT 2140 2139 2141 CONECT 2141 2140 2142 2143 2144 CONECT 2142 2141 CONECT 2143 2141 CONECT 2144 2141 CONECT 2145 2137 2146 CONECT 2146 2145 2147 CONECT 2147 2146 2148 2165 CONECT 2148 2147 2149 CONECT 2149 2148 2150 CONECT 2150 2149 2151 2152 CONECT 2151 2150 CONECT 2152 2150 2153 CONECT 2153 2152 2154 CONECT 2154 2153 2155 CONECT 2155 2154 2156 CONECT 2156 2155 2157 CONECT 2157 2156 2158 CONECT 2158 2157 2159 CONECT 2159 2158 2160 CONECT 2160 2159 2161 CONECT 2161 2160 2162 CONECT 2162 2161 2163 CONECT 2163 2162 2164 CONECT 2164 2163 CONECT 2165 2147 2166 CONECT 2166 2165 2167 2168 CONECT 2167 2166 CONECT 2168 2166 2169 CONECT 2169 2168 2170 CONECT 2170 2169 2171 CONECT 2171 2170 2172 CONECT 2172 2171 2173 CONECT 2173 2172 2174 CONECT 2174 2173 2175 CONECT 2175 2174 2176 CONECT 2176 2175 2177 CONECT 2177 2176 2178 CONECT 2178 2177 2179 CONECT 2179 2178 2180 CONECT 2180 2179 CONECT 2181 2183 CONECT 2182 2183 CONECT 2183 2181 2182 2184 2191 CONECT 2184 2183 2185 CONECT 2185 2184 2186 CONECT 2186 2185 2187 CONECT 2187 2186 2188 2189 2190 CONECT 2188 2187 CONECT 2189 2187 CONECT 2190 2187 CONECT 2191 2183 2192 CONECT 2192 2191 2193 CONECT 2193 2192 2194 2211 CONECT 2194 2193 2195 CONECT 2195 2194 2196 CONECT 2196 2195 2197 2198 CONECT 2197 2196 CONECT 2198 2196 2199 CONECT 2199 2198 2200 CONECT 2200 2199 2201 CONECT 2201 2200 2202 CONECT 2202 2201 2203 CONECT 2203 2202 2204 CONECT 2204 2203 2205 CONECT 2205 2204 2206 CONECT 2206 2205 2207 CONECT 2207 2206 2208 CONECT 2208 2207 2209 CONECT 2209 2208 2210 CONECT 2210 2209 CONECT 2211 2193 2212 CONECT 2212 2211 2213 2214 CONECT 2213 2212 CONECT 2214 2212 2215 CONECT 2215 2214 2216 CONECT 2216 2215 2217 CONECT 2217 2216 2218 CONECT 2218 2217 2219 CONECT 2219 2218 2220 CONECT 2220 2219 2221 CONECT 2221 2220 2222 CONECT 2222 2221 2223 CONECT 2223 2222 2224 CONECT 2224 2223 2225 CONECT 2225 2224 2226 CONECT 2226 2225 CONECT 2227 2229 CONECT 2228 2229 CONECT 2229 2227 2228 2230 2237 CONECT 2230 2229 2231 CONECT 2231 2230 2232 CONECT 2232 2231 2233 CONECT 2233 2232 2234 2235 2236 CONECT 2234 2233 CONECT 2235 2233 CONECT 2236 2233 CONECT 2237 2229 2238 CONECT 2238 2237 2239 CONECT 2239 2238 2240 2257 CONECT 2240 2239 2241 CONECT 2241 2240 2242 CONECT 2242 2241 2243 2244 CONECT 2243 2242 CONECT 2244 2242 2245 CONECT 2245 2244 2246 CONECT 2246 2245 2247 CONECT 2247 2246 2248 CONECT 2248 2247 2249 CONECT 2249 2248 2250 CONECT 2250 2249 2251 CONECT 2251 2250 2252 CONECT 2252 2251 2253 CONECT 2253 2252 2254 CONECT 2254 2253 2255 CONECT 2255 2254 2256 CONECT 2256 2255 CONECT 2257 2239 2258 CONECT 2258 2257 2259 2260 CONECT 2259 2258 CONECT 2260 2258 2261 CONECT 2261 2260 2262 CONECT 2262 2261 2263 CONECT 2263 2262 2264 CONECT 2264 2263 2265 CONECT 2265 2264 2266 CONECT 2266 2265 2267 CONECT 2267 2266 2268 CONECT 2268 2267 2269 CONECT 2269 2268 2270 CONECT 2270 2269 2271 CONECT 2271 2270 2272 CONECT 2272 2271 MASTER 408 0 12 17 0 0 0 6 2281 1 398 21 END