HEADER MEMBRANE PROTEIN 09-JUN-25 9VDU TITLE CRYSTAL STRUCTURE OF VOLTAGE-GATED SODIUM CHANNEL NAVAB N49K/L176F TITLE 2 DC230 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALIARCOBACTER BUTZLERI (STRAIN RM4018); SOURCE 3 ORGANISM_TAXID: 367737; SOURCE 4 GENE: ABU_1752; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ION CHANNEL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.IRIE REVDAT 1 20-MAY-26 9VDU 0 JRNL AUTH K.IRIE,S.HAN,S.APPLEWHITE,Y.K.MAEDA,J.VANCE,S.WANG JRNL TITL THE STRUCTURAL DYNAMICS AND MOLECULAR COUPLING IN THE SLOW JRNL TITL 2 INACTIVATION OF A PROKARYOTIC VOLTAGE-GATED SODIUM CHANNEL JRNL REF BIORXIV 2026 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2025.08.14.670348 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 11850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6800 - 9.1500 0.99 625 37 0.2999 0.3426 REMARK 3 2 9.1400 - 7.2900 1.00 593 34 0.2478 0.2781 REMARK 3 3 7.2900 - 6.3800 1.00 584 27 0.3002 0.3412 REMARK 3 4 6.3800 - 5.8000 1.00 569 35 0.3498 0.3686 REMARK 3 5 5.8000 - 5.3900 1.00 570 27 0.3113 0.2876 REMARK 3 6 5.3900 - 5.0700 1.00 586 25 0.2510 0.2725 REMARK 3 7 5.0700 - 4.8200 1.00 555 34 0.2364 0.3589 REMARK 3 8 4.8200 - 4.6100 1.00 552 32 0.2084 0.2577 REMARK 3 9 4.6100 - 4.4300 1.00 569 23 0.2429 0.2917 REMARK 3 10 4.4300 - 4.2800 1.00 551 38 0.2482 0.2920 REMARK 3 11 4.2800 - 4.1500 1.00 564 34 0.2232 0.3652 REMARK 3 12 4.1500 - 4.0300 1.00 562 20 0.2037 0.2843 REMARK 3 13 4.0300 - 3.9200 1.00 553 41 0.2142 0.2689 REMARK 3 14 3.9200 - 3.8300 1.00 570 17 0.2176 0.3625 REMARK 3 15 3.8300 - 3.7400 1.00 561 24 0.2216 0.2441 REMARK 3 16 3.7400 - 3.6600 1.00 535 31 0.1968 0.2278 REMARK 3 17 3.6600 - 3.5900 1.00 565 26 0.2048 0.2239 REMARK 3 18 3.5900 - 3.5200 1.00 572 24 0.2190 0.2741 REMARK 3 19 3.5200 - 3.4600 0.96 524 21 0.2321 0.2506 REMARK 3 20 3.4600 - 3.4000 0.92 516 24 0.2576 0.3003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.428 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2193 REMARK 3 ANGLE : 1.446 2929 REMARK 3 CHIRALITY : 0.076 328 REMARK 3 PLANARITY : 0.007 308 REMARK 3 DIHEDRAL : 22.297 920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 12.2644 -16.4998 25.4397 REMARK 3 T TENSOR REMARK 3 T11: 0.8652 T22: 0.6449 REMARK 3 T33: 0.4821 T12: 0.1118 REMARK 3 T13: -0.0378 T23: 0.1803 REMARK 3 L TENSOR REMARK 3 L11: 3.3059 L22: 1.4311 REMARK 3 L33: 2.5790 L12: -0.8059 REMARK 3 L13: 0.9350 L23: -0.0797 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: -0.4440 S13: -0.2308 REMARK 3 S21: 0.5482 S22: 0.0065 S23: -0.2657 REMARK 3 S31: 0.7008 S32: 0.3863 S33: 0.0341 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9VDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1300060466. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11918 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 104.7 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 84.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7%-9% PEG 6000, 100MM SODIUM CHLORIDE, REMARK 280 100MM MAGNESIUM NITRATE, 100MM CADMIUM CHLORIDE, 10MM COPPER REMARK 280 CHLORIDE, 100MM TRIS-HCL, PH 8.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 64.26000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 64.26000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 100.39500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 64.26000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 64.26000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 100.39500 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 64.26000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 64.26000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 100.39500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 64.26000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 64.26000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 100.39500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 64.26000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.26000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 100.39500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 64.26000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 64.26000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 100.39500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 64.26000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 64.26000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 100.39500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 64.26000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 64.26000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 100.39500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A1302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1404 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 999 REMARK 465 SER A 1000 REMARK 465 PRO A 1090 REMARK 465 THR A 1091 REMARK 465 SER A 1092 REMARK 465 SER A 1093 REMARK 465 GLY A 1094 REMARK 465 PHE A 1095 REMARK 465 GLU A 1096 REMARK 465 GLN A 1226 REMARK 465 LYS A 1227 REMARK 465 GLU A 1228 REMARK 465 GLU A 1229 REMARK 465 GLN A 1230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLU A 1165 C5 PX4 A 1304 3555 1.50 REMARK 500 OE2 GLU A 1165 C5 PX4 A 1304 3555 1.73 REMARK 500 OE1 GLU A 1165 C5 PX4 A 1304 3555 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A1009 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1403 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1404 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH A1405 DISTANCE = 9.42 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1N7 A 1303 REMARK 610 PX4 A 1308 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1401 O REMARK 620 2 HOH A1401 O 5.1 REMARK 620 N 1 DBREF 9VDU A 1001 1230 UNP A8EVM5 A8EVM5_ALIB4 1 230 SEQADV 9VDU GLY A 999 UNP A8EVM5 EXPRESSION TAG SEQADV 9VDU SER A 1000 UNP A8EVM5 EXPRESSION TAG SEQADV 9VDU LYS A 1049 UNP A8EVM5 ASN 49 ENGINEERED MUTATION SEQADV 9VDU PHE A 1176 UNP A8EVM5 LEU 176 ENGINEERED MUTATION SEQRES 1 A 232 GLY SER MET TYR LEU ARG ILE THR ASN ILE VAL GLU SER SEQRES 2 A 232 SER PHE PHE THR LYS PHE ILE ILE TYR LEU ILE VAL LEU SEQRES 3 A 232 ASN GLY ILE THR MET GLY LEU GLU THR SER LYS THR PHE SEQRES 4 A 232 MET GLN SER PHE GLY VAL TYR THR THR LEU PHE LYS GLN SEQRES 5 A 232 ILE VAL ILE THR ILE PHE THR ILE GLU ILE ILE LEU ARG SEQRES 6 A 232 ILE TYR VAL HIS ARG ILE SER PHE PHE LYS ASP PRO TRP SEQRES 7 A 232 SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SER LEU VAL SEQRES 8 A 232 PRO THR SER SER GLY PHE GLU ILE LEU ARG VAL LEU ARG SEQRES 9 A 232 VAL LEU ARG LEU PHE ARG LEU VAL THR ALA VAL PRO GLN SEQRES 10 A 232 MET ARG LYS ILE VAL SER ALA LEU ILE SER VAL ILE PRO SEQRES 11 A 232 GLY MET LEU SER VAL ILE ALA LEU MET THR LEU PHE PHE SEQRES 12 A 232 TYR ILE PHE ALA ILE MET ALA THR GLN LEU PHE GLY GLU SEQRES 13 A 232 ARG PHE PRO GLU TRP PHE GLY THR LEU GLY GLU SER PHE SEQRES 14 A 232 TYR THR LEU PHE GLN VAL MET THR PHE GLU SER TRP SER SEQRES 15 A 232 MET GLY ILE VAL ARG PRO LEU MET GLU VAL TYR PRO TYR SEQRES 16 A 232 ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE VAL VAL THR SEQRES 17 A 232 PHE VAL MET ILE ASN LEU VAL VAL ALA ILE ILE VAL ASP SEQRES 18 A 232 ALA MET ALA ILE LEU ASN GLN LYS GLU GLU GLN HET NA A1301 1 HET NA A1302 1 HET 1N7 A1303 32 HET PX4 A1304 46 HET PX4 A1305 46 HET PX4 A1306 46 HET PX4 A1307 46 HET PX4 A1308 45 HET PX4 A1309 46 HET PX4 A1310 46 HETNAM NA SODIUM ION HETNAM 1N7 CHAPSO HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETSYN 1N7 2-HYDROXY-N,N-DIMETHYL-3-SULFO-N-(3-{[(3BETA,5BETA, HETSYN 2 1N7 7BETA,12BETA)-3,7,12-TRIHYDROXY-24-OXOCHOLAN-24- HETSYN 3 1N7 YL]AMINO}PROPYL)PROPAN-1-AMINIUM FORMUL 2 NA 2(NA 1+) FORMUL 4 1N7 C32 H59 N2 O8 S 1+ FORMUL 5 PX4 7(C36 H73 N O8 P 1+) FORMUL 12 HOH *5(H2 O) HELIX 1 AA1 MET A 1001 GLU A 1010 1 10 HELIX 2 AA2 SER A 1011 THR A 1033 1 23 HELIX 3 AA3 SER A 1034 HIS A 1067 1 34 HELIX 4 AA4 ILE A 1069 ASP A 1074 1 6 HELIX 5 AA5 ASP A 1074 LEU A 1088 1 15 HELIX 6 AA6 LEU A 1098 ARG A 1102 1 5 HELIX 7 AA7 VAL A 1103 LEU A 1106 5 4 HELIX 8 AA8 PHE A 1107 VAL A 1113 1 7 HELIX 9 AA9 VAL A 1113 SER A 1125 1 13 HELIX 10 AB1 VAL A 1126 GLY A 1153 1 28 HELIX 11 AB2 PHE A 1156 GLY A 1161 1 6 HELIX 12 AB3 THR A 1162 THR A 1175 1 14 HELIX 13 AB4 SER A 1178 ILE A 1183 1 6 HELIX 14 AB5 ILE A 1183 TYR A 1191 1 9 HELIX 15 AB6 ALA A 1194 ASN A 1225 1 32 LINK NA NA A1301 O HOH A1401 1555 1555 2.39 LINK NA NA A1301 O HOH A1401 1555 4555 2.41 CRYST1 128.520 128.520 200.790 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007781 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004980 0.00000 CONECT 1797 2152 CONECT 1799 1800 1810 CONECT 1800 1799 1809 1813 1817 CONECT 1801 1802 1817 CONECT 1802 1801 1803 1827 CONECT 1803 1802 1804 1807 1808 CONECT 1804 1803 1805 1816 CONECT 1805 1804 1806 CONECT 1806 1805 1807 CONECT 1807 1803 1806 1818 CONECT 1808 1803 CONECT 1809 1800 CONECT 1810 1799 1811 CONECT 1811 1810 1812 1825 CONECT 1812 1811 1813 CONECT 1813 1800 1812 1814 CONECT 1814 1813 1815 CONECT 1815 1814 1816 1826 CONECT 1816 1804 1815 1817 CONECT 1817 1800 1801 1816 CONECT 1818 1807 1819 1820 CONECT 1819 1818 CONECT 1820 1818 1821 CONECT 1821 1820 1822 CONECT 1822 1821 1823 1824 CONECT 1823 1822 1828 CONECT 1824 1822 CONECT 1825 1811 CONECT 1826 1815 CONECT 1827 1802 CONECT 1828 1823 1829 CONECT 1829 1828 1830 CONECT 1830 1829 CONECT 1831 1833 CONECT 1832 1833 CONECT 1833 1831 1832 1834 1841 CONECT 1834 1833 1835 CONECT 1835 1834 1836 CONECT 1836 1835 1837 CONECT 1837 1836 1838 1839 1840 CONECT 1838 1837 CONECT 1839 1837 CONECT 1840 1837 CONECT 1841 1833 1842 CONECT 1842 1841 1843 CONECT 1843 1842 1844 1861 CONECT 1844 1843 1845 CONECT 1845 1844 1846 CONECT 1846 1845 1847 1848 CONECT 1847 1846 CONECT 1848 1846 1849 CONECT 1849 1848 1850 CONECT 1850 1849 1851 CONECT 1851 1850 1852 CONECT 1852 1851 1853 CONECT 1853 1852 1854 CONECT 1854 1853 1855 CONECT 1855 1854 1856 CONECT 1856 1855 1857 CONECT 1857 1856 1858 CONECT 1858 1857 1859 CONECT 1859 1858 1860 CONECT 1860 1859 CONECT 1861 1843 1862 CONECT 1862 1861 1863 1864 CONECT 1863 1862 CONECT 1864 1862 1865 CONECT 1865 1864 1866 CONECT 1866 1865 1867 CONECT 1867 1866 1868 CONECT 1868 1867 1869 CONECT 1869 1868 1870 CONECT 1870 1869 1871 CONECT 1871 1870 1872 CONECT 1872 1871 1873 CONECT 1873 1872 1874 CONECT 1874 1873 1875 CONECT 1875 1874 1876 CONECT 1876 1875 CONECT 1877 1879 CONECT 1878 1879 CONECT 1879 1877 1878 1880 1887 CONECT 1880 1879 1881 CONECT 1881 1880 1882 CONECT 1882 1881 1883 CONECT 1883 1882 1884 1885 1886 CONECT 1884 1883 CONECT 1885 1883 CONECT 1886 1883 CONECT 1887 1879 1888 CONECT 1888 1887 1889 CONECT 1889 1888 1890 1907 CONECT 1890 1889 1891 CONECT 1891 1890 1892 CONECT 1892 1891 1893 1894 CONECT 1893 1892 CONECT 1894 1892 1895 CONECT 1895 1894 1896 CONECT 1896 1895 1897 CONECT 1897 1896 1898 CONECT 1898 1897 1899 CONECT 1899 1898 1900 CONECT 1900 1899 1901 CONECT 1901 1900 1902 CONECT 1902 1901 1903 CONECT 1903 1902 1904 CONECT 1904 1903 1905 CONECT 1905 1904 1906 CONECT 1906 1905 CONECT 1907 1889 1908 CONECT 1908 1907 1909 1910 CONECT 1909 1908 CONECT 1910 1908 1911 CONECT 1911 1910 1912 CONECT 1912 1911 1913 CONECT 1913 1912 1914 CONECT 1914 1913 1915 CONECT 1915 1914 1916 CONECT 1916 1915 1917 CONECT 1917 1916 1918 CONECT 1918 1917 1919 CONECT 1919 1918 1920 CONECT 1920 1919 1921 CONECT 1921 1920 1922 CONECT 1922 1921 CONECT 1923 1925 CONECT 1924 1925 CONECT 1925 1923 1924 1926 1933 CONECT 1926 1925 1927 CONECT 1927 1926 1928 CONECT 1928 1927 1929 CONECT 1929 1928 1930 1931 1932 CONECT 1930 1929 CONECT 1931 1929 CONECT 1932 1929 CONECT 1933 1925 1934 CONECT 1934 1933 1935 CONECT 1935 1934 1936 1953 CONECT 1936 1935 1937 CONECT 1937 1936 1938 CONECT 1938 1937 1939 1940 CONECT 1939 1938 CONECT 1940 1938 1941 CONECT 1941 1940 1942 CONECT 1942 1941 1943 CONECT 1943 1942 1944 CONECT 1944 1943 1945 CONECT 1945 1944 1946 CONECT 1946 1945 1947 CONECT 1947 1946 1948 CONECT 1948 1947 1949 CONECT 1949 1948 1950 CONECT 1950 1949 1951 CONECT 1951 1950 1952 CONECT 1952 1951 CONECT 1953 1935 1954 CONECT 1954 1953 1955 1956 CONECT 1955 1954 CONECT 1956 1954 1957 CONECT 1957 1956 1958 CONECT 1958 1957 1959 CONECT 1959 1958 1960 CONECT 1960 1959 1961 CONECT 1961 1960 1962 CONECT 1962 1961 1963 CONECT 1963 1962 1964 CONECT 1964 1963 1965 CONECT 1965 1964 1966 CONECT 1966 1965 1967 CONECT 1967 1966 1968 CONECT 1968 1967 CONECT 1969 1971 CONECT 1970 1971 CONECT 1971 1969 1970 1972 1979 CONECT 1972 1971 1973 CONECT 1973 1972 1974 CONECT 1974 1973 1975 CONECT 1975 1974 1976 1977 1978 CONECT 1976 1975 CONECT 1977 1975 CONECT 1978 1975 CONECT 1979 1971 1980 CONECT 1980 1979 1981 CONECT 1981 1980 1982 1999 CONECT 1982 1981 1983 CONECT 1983 1982 1984 CONECT 1984 1983 1985 1986 CONECT 1985 1984 CONECT 1986 1984 1987 CONECT 1987 1986 1988 CONECT 1988 1987 1989 CONECT 1989 1988 1990 CONECT 1990 1989 1991 CONECT 1991 1990 1992 CONECT 1992 1991 1993 CONECT 1993 1992 1994 CONECT 1994 1993 1995 CONECT 1995 1994 1996 CONECT 1996 1995 1997 CONECT 1997 1996 1998 CONECT 1998 1997 CONECT 1999 1981 2000 CONECT 2000 1999 2001 2002 CONECT 2001 2000 CONECT 2002 2000 2003 CONECT 2003 2002 2004 CONECT 2004 2003 2005 CONECT 2005 2004 2006 CONECT 2006 2005 2007 CONECT 2007 2006 2008 CONECT 2008 2007 2009 CONECT 2009 2008 2010 CONECT 2010 2009 2011 CONECT 2011 2010 2012 CONECT 2012 2011 2013 CONECT 2013 2012 2014 CONECT 2014 2013 CONECT 2015 2017 CONECT 2016 2017 CONECT 2017 2015 2016 2018 2025 CONECT 2018 2017 2019 CONECT 2019 2018 2020 CONECT 2020 2019 2021 CONECT 2021 2020 2022 2023 2024 CONECT 2022 2021 CONECT 2023 2021 CONECT 2024 2021 CONECT 2025 2017 2026 CONECT 2026 2025 2027 CONECT 2027 2026 2028 2044 CONECT 2028 2027 2029 CONECT 2029 2028 2030 CONECT 2030 2029 2031 2032 CONECT 2031 2030 CONECT 2032 2030 2033 CONECT 2033 2032 2034 CONECT 2034 2033 2035 CONECT 2035 2034 2036 CONECT 2036 2035 2037 CONECT 2037 2036 2038 CONECT 2038 2037 2039 CONECT 2039 2038 2040 CONECT 2040 2039 2041 CONECT 2041 2040 2042 CONECT 2042 2041 2043 CONECT 2043 2042 CONECT 2044 2027 2045 CONECT 2045 2044 2046 2047 CONECT 2046 2045 CONECT 2047 2045 2048 CONECT 2048 2047 2049 CONECT 2049 2048 2050 CONECT 2050 2049 2051 CONECT 2051 2050 2052 CONECT 2052 2051 2053 CONECT 2053 2052 2054 CONECT 2054 2053 2055 CONECT 2055 2054 2056 CONECT 2056 2055 2057 CONECT 2057 2056 2058 CONECT 2058 2057 2059 CONECT 2059 2058 CONECT 2060 2062 CONECT 2061 2062 CONECT 2062 2060 2061 2063 2070 CONECT 2063 2062 2064 CONECT 2064 2063 2065 CONECT 2065 2064 2066 CONECT 2066 2065 2067 2068 2069 CONECT 2067 2066 CONECT 2068 2066 CONECT 2069 2066 CONECT 2070 2062 2071 CONECT 2071 2070 2072 CONECT 2072 2071 2073 2090 CONECT 2073 2072 2074 CONECT 2074 2073 2075 CONECT 2075 2074 2076 2077 CONECT 2076 2075 CONECT 2077 2075 2078 CONECT 2078 2077 2079 CONECT 2079 2078 2080 CONECT 2080 2079 2081 CONECT 2081 2080 2082 CONECT 2082 2081 2083 CONECT 2083 2082 2084 CONECT 2084 2083 2085 CONECT 2085 2084 2086 CONECT 2086 2085 2087 CONECT 2087 2086 2088 CONECT 2088 2087 2089 CONECT 2089 2088 CONECT 2090 2072 2091 CONECT 2091 2090 2092 2093 CONECT 2092 2091 CONECT 2093 2091 2094 CONECT 2094 2093 2095 CONECT 2095 2094 2096 CONECT 2096 2095 2097 CONECT 2097 2096 2098 CONECT 2098 2097 2099 CONECT 2099 2098 2100 CONECT 2100 2099 2101 CONECT 2101 2100 2102 CONECT 2102 2101 2103 CONECT 2103 2102 2104 CONECT 2104 2103 2105 CONECT 2105 2104 CONECT 2106 2108 CONECT 2107 2108 CONECT 2108 2106 2107 2109 2116 CONECT 2109 2108 2110 CONECT 2110 2109 2111 CONECT 2111 2110 2112 CONECT 2112 2111 2113 2114 2115 CONECT 2113 2112 CONECT 2114 2112 CONECT 2115 2112 CONECT 2116 2108 2117 CONECT 2117 2116 2118 CONECT 2118 2117 2119 2136 CONECT 2119 2118 2120 CONECT 2120 2119 2121 CONECT 2121 2120 2122 2123 CONECT 2122 2121 CONECT 2123 2121 2124 CONECT 2124 2123 2125 CONECT 2125 2124 2126 CONECT 2126 2125 2127 CONECT 2127 2126 2128 CONECT 2128 2127 2129 CONECT 2129 2128 2130 CONECT 2130 2129 2131 CONECT 2131 2130 2132 CONECT 2132 2131 2133 CONECT 2133 2132 2134 CONECT 2134 2133 2135 CONECT 2135 2134 CONECT 2136 2118 2137 CONECT 2137 2136 2138 2139 CONECT 2138 2137 CONECT 2139 2137 2140 CONECT 2140 2139 2141 CONECT 2141 2140 2142 CONECT 2142 2141 2143 CONECT 2143 2142 2144 CONECT 2144 2143 2145 CONECT 2145 2144 2146 CONECT 2146 2145 2147 CONECT 2147 2146 2148 CONECT 2148 2147 2149 CONECT 2149 2148 2150 CONECT 2150 2149 2151 CONECT 2151 2150 CONECT 2152 1797 MASTER 391 0 10 15 0 0 0 6 2155 1 355 18 END