HEADER HYDROLASE 11-JUN-25 9VFK TITLE PUTATIVE BLF1-LIKE DEAMIDASE FROM METHYLOMONAS SP. KB3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE BLF1-LIKE DEAMIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOMONAS SP. KB3; SOURCE 3 ORGANISM_TAXID: 1611544; SOURCE 4 GENE: CWO84_RS12955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DEAMIDASE, HYPOTHETICAL PROTEIN, MOTIF, DISTANT HOMOLOG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.A.S.MUHAMAD ISMAIL,A.A.ABD AZIZ,A.NAKAGAWA,D.RICE,S.NATHAN,F.D.ABU AUTHOR 2 BAKAR,A.M.ABDUL MURAD,M.FIRDAUS-RAIH,D.H.X.QUAY REVDAT 1 30-SEP-26 9VFK 0 JRNL AUTH N.A.S.MUHAMAD ISMAIL,A.A.ABD AZIZ,A.NAKAGAWA,F.D.ABU BAKAR, JRNL AUTH 2 A.M.ABDUL MURAD,S.NATHAN,M.F.MOHD RAIH,D.H.X.QUAY,D.RICE JRNL TITL STRUCTURAL INSIGHTS INTO A PUTATIVE BLF1-LIKE DEAMIDASE FROM JRNL TITL 2 METHYLOMONAS SP. KB3. JRNL REF ACTA CRYSTALLOGR.,SECT.F 2026 JRNL REFN ESSN 2053-230X JRNL PMID 42745721 JRNL DOI 10.1107/S2053230X2600868X REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0431 (REFMACAT 0.4.126) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.034 REMARK 3 FREE R VALUE TEST SET COUNT : 3019 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 232 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.070 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.064 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.217 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1764 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1632 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2391 ; 2.047 ; 1.796 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3742 ; 0.666 ; 1.754 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 219 ; 7.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ;16.665 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 280 ;11.617 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2117 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 435 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 289 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 13 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 851 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 152 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 876 ; 9.548 ; 3.364 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 876 ; 9.547 ; 3.363 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1095 ;11.971 ; 6.034 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1096 ;11.967 ; 6.033 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 888 ;12.324 ; 3.689 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 877 ;11.932 ; 3.665 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1296 ;15.922 ; 6.632 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1279 ;15.508 ; 6.585 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3396 ; 5.070 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): 50.1381 0.5919 -10.4112 REMARK 3 T TENSOR REMARK 3 T11: 0.0321 T22: 0.0124 REMARK 3 T33: 0.0264 T12: 0.0094 REMARK 3 T13: -0.0006 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.0880 L22: 0.8110 REMARK 3 L33: 2.0823 L12: -0.1594 REMARK 3 L13: -0.3072 L23: 0.3430 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: -0.0324 S13: -0.1502 REMARK 3 S21: 0.0938 S22: 0.0967 S23: -0.0126 REMARK 3 S31: 0.2317 S32: 0.0324 S33: -0.0387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9VFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1300059167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59984 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 46.818 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 44.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES MONOHYDRATE, PH 6.5,1.6 M REMARK 280 MAGNESIUM SULFATE HEPTAHYDRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 84.32350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.32350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 84.32350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.32350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.32350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 84.32350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 84.32350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 84.32350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 84.32350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 84.32350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 84.32350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 84.32350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 84.32350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 84.32350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 84.32350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 84.32350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 84.32350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 84.32350 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 126.48525 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 42.16175 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 42.16175 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 126.48525 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 126.48525 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 126.48525 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.16175 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 42.16175 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 126.48525 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.16175 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 126.48525 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 42.16175 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 126.48525 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 42.16175 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 42.16175 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 42.16175 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 126.48525 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 42.16175 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 126.48525 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 126.48525 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 126.48525 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 42.16175 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 42.16175 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 126.48525 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 126.48525 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 42.16175 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 42.16175 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 42.16175 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 42.16175 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 126.48525 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 42.16175 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 126.48525 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 42.16175 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 126.48525 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 126.48525 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 126.48525 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 83 O HOH A 401 1.59 REMARK 500 O HOH A 512 O HOH A 563 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 25 OG1 - CB - CG2 ANGL. DEV. = 13.9 DEGREES REMARK 500 MET A 26 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 TYR A 89 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 23 41.42 -107.68 REMARK 500 ASN A 31 18.97 59.43 REMARK 500 ARG A 79 -55.36 -133.73 REMARK 500 ASN A 110 131.96 -39.13 REMARK 500 ASP A 112 55.29 -143.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 72 0.09 SIDE CHAIN REMARK 500 ARG A 79 0.08 SIDE CHAIN REMARK 500 ARG A 168 0.15 SIDE CHAIN REMARK 500 ARG A 185 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 589 DISTANCE = 6.43 ANGSTROMS DBREF1 9VFK A 1 217 UNP A0A2N0V6Z7_9GAMM DBREF2 9VFK A A0A2N0V6Z7 1 217 SEQADV 9VFK SER A -2 UNP A0A2N0V6Z EXPRESSION TAG SEQADV 9VFK ASN A -1 UNP A0A2N0V6Z EXPRESSION TAG SEQADV 9VFK ALA A 0 UNP A0A2N0V6Z EXPRESSION TAG SEQRES 1 A 220 SER ASN ALA MET THR ALA ILE SER ASP PHE VAL ALA ASN SEQRES 2 A 220 PRO LYS GLN PHE LEU LYS ASN ASN VAL LEU ARG VAL LEU SEQRES 3 A 220 PHE THR MET PRO ALA GLN PRO ASN SER ILE GLY MET PHE SEQRES 4 A 220 LYS PHE GLU ARG LYS ASN TYR ASP ALA VAL LYS LEU ALA SEQRES 5 A 220 THR GLY ALA ASN ILE PRO CYS TYR SER LEU VAL PRO ILE SEQRES 6 A 220 HIS GLY GLN GLU ALA THR ILE PHE SER ARG ASN ALA THR SEQRES 7 A 220 SER ALA ASN ARG ASP TYR LEU ARG ALA TYR TRP CYS PRO SEQRES 8 A 220 TYR GLU ASP ASP ALA MET HIS SER ILE MET VAL GLY ALA SEQRES 9 A 220 GLY ALA ASP PHE MET PHE THR SER ASN MET ASP GLY CSO SEQRES 10 A 220 SER PHE GLY VAL GLY SER ALA THR PRO THR GLY ASP ARG SEQRES 11 A 220 ARG VAL ALA HIS ILE ASN LEU ARG SER GLN PRO ASN SER SEQRES 12 A 220 HIS ASN LEU GLN ASP GLY THR LEU ALA VAL GLN SER LEU SEQRES 13 A 220 THR ASP HIS HIS VAL LYS PRO ASP ARG TYR MET LYS SER SEQRES 14 A 220 SER ARG THR PRO GLY SER ILE PRO GLY GLU ILE LYS ALA SEQRES 15 A 220 THR THR ILE GLY ILE ARG ASN THR ALA THR GLY ALA TRP SEQRES 16 A 220 SER PHE HIS TYR GLN GLN TYR ARG LEU LEU GLY GLY GLN SEQRES 17 A 220 ILE ASN GLN VAL TYR LEU LEU ALA LEU LYS ASN VAL MODRES 9VFK CSO A 114 CYS MODIFIED RESIDUE HET CSO A 114 12 HET EDO A 301 10 HET EDO A 302 10 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HETNAM CSO S-HYDROXYCYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *189(H2 O) HELIX 1 AA1 THR A 2 ASN A 10 1 9 HELIX 2 AA2 ASN A 10 LYS A 16 1 7 HELIX 3 AA3 GLN A 29 ASN A 31 5 3 HELIX 4 AA4 HIS A 63 ARG A 72 1 10 HELIX 5 AA5 ASN A 73 ALA A 77 5 5 HELIX 6 AA6 ASN A 139 GLN A 151 1 13 HELIX 7 AA7 LYS A 159 MET A 164 1 6 HELIX 8 AA8 GLY A 203 GLN A 205 5 3 SHEET 1 AA110 VAL A 19 ARG A 21 0 SHEET 2 AA110 CYS A 56 PRO A 61 1 O TYR A 57 N VAL A 19 SHEET 3 AA110 ILE A 33 ARG A 40 -1 N GLU A 39 O SER A 58 SHEET 4 AA110 LEU A 82 CYS A 87 -1 O ALA A 84 N GLY A 34 SHEET 5 AA110 PHE A 105 THR A 108 1 O PHE A 105 N TYR A 85 SHEET 6 AA110 ILE A 177 ARG A 185 -1 O GLY A 183 N MET A 106 SHEET 7 AA110 TRP A 192 LEU A 201 -1 O SER A 193 N ILE A 184 SHEET 8 AA110 VAL A 209 VAL A 217 -1 O LYS A 215 N TYR A 196 SHEET 9 AA110 ALA A 45 LYS A 47 1 N VAL A 46 O LEU A 211 SHEET 10 AA110 ASN A 53 ILE A 54 -1 O ILE A 54 N ALA A 45 SHEET 1 AA2 4 ALA A 93 VAL A 99 0 SHEET 2 AA2 4 ARG A 127 ASN A 133 -1 O ARG A 127 N VAL A 99 SHEET 3 AA2 4 SER A 115 VAL A 118 -1 N SER A 115 O ILE A 132 SHEET 4 AA2 4 HIS A 157 VAL A 158 -1 O VAL A 158 N PHE A 116 LINK C GLY A 113 N CSO A 114 1555 1555 1.33 LINK C CSO A 114 N SER A 115 1555 1555 1.34 CRYST1 168.647 168.647 168.647 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005930 0.00000 CONECT 1774 1779 CONECT 1779 1774 1780 1786 CONECT 1780 1779 1781 1783 1787 CONECT 1781 1780 1782 1788 1789 CONECT 1782 1781 1785 CONECT 1783 1780 1784 1791 CONECT 1784 1783 CONECT 1785 1782 1790 CONECT 1786 1779 CONECT 1787 1780 CONECT 1788 1781 CONECT 1789 1781 CONECT 1790 1785 CONECT 1791 1783 CONECT 3386 3387 3388 3390 3391 CONECT 3387 3386 3392 CONECT 3388 3386 3389 3393 3394 CONECT 3389 3388 3395 CONECT 3390 3386 CONECT 3391 3386 CONECT 3392 3387 CONECT 3393 3388 CONECT 3394 3388 CONECT 3395 3389 CONECT 3396 3397 3398 3400 3401 CONECT 3397 3396 3402 CONECT 3398 3396 3399 3403 3404 CONECT 3399 3398 3405 CONECT 3400 3396 CONECT 3401 3396 CONECT 3402 3397 CONECT 3403 3398 CONECT 3404 3398 CONECT 3405 3399 CONECT 3406 3407 3408 3409 3410 CONECT 3407 3406 CONECT 3408 3406 CONECT 3409 3406 CONECT 3410 3406 CONECT 3411 3412 3413 3414 3415 CONECT 3412 3411 CONECT 3413 3411 CONECT 3414 3411 CONECT 3415 3411 CONECT 3416 3417 3418 3419 3420 CONECT 3417 3416 CONECT 3418 3416 CONECT 3419 3416 CONECT 3420 3416 MASTER 437 0 6 8 14 0 0 6 1906 1 49 17 END