HEADER DNA BINDING PROTEIN 15-JUN-25 9VGW TITLE CRYSTAL STRUCTURE OF HUMAN PCNA IN COMPLEX WITH REV1 PIP-BOX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PCNA,CYCLIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE FROM DNA REPAIR PROTEIN REV1; COMPND 8 CHAIN: X, Y, Z; COMPND 9 SYNONYM: ALPHA INTEGRIN-BINDING PROTEIN 80,AIBP80,REV1-LIKE TERMINAL COMPND 10 DEOXYCYTIDYL TRANSFERASE; COMPND 11 EC: 2.7.7.-; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: REV1 PIP-BOX SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR PROTEIN, DNA REPLICATION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,A.HISHIKI REVDAT 2 19-NOV-25 9VGW 1 JRNL REVDAT 1 10-SEP-25 9VGW 0 JRNL AUTH A.HISHIKI,N.HOSHINO,K.OKAWARA,S.FUCHIGAMI,K.HARA,H.HASHIMOTO JRNL TITL IDENTIFICATION OF A PCNA-BINDING MOTIF IN HUMAN TRANSLESION JRNL TITL 2 DNA POLYMERASE REV1 AND STRUCTURAL BASIS OF ITS INTERACTION JRNL TITL 3 WITH PCNA. JRNL REF J.BIOCHEM. V. 178 315 2025 JRNL REFN ISSN 0021-924X JRNL PMID 40888629 JRNL DOI 10.1093/JB/MVAF054 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1230 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1696 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.18000 REMARK 3 B22 (A**2) : -2.15000 REMARK 3 B33 (A**2) : 3.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.359 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.319 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5985 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5853 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8066 ; 1.349 ; 1.821 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13531 ; 0.573 ; 1.755 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 755 ; 6.606 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 24 ; 2.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1121 ;18.142 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 956 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6796 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1226 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3056 ; 2.639 ; 3.760 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3056 ; 2.639 ; 3.760 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3799 ; 4.330 ; 6.734 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3800 ; 4.329 ; 6.734 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2929 ; 3.267 ; 4.187 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2930 ; 3.266 ; 4.187 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4268 ; 5.309 ; 7.549 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6044 ; 7.541 ;35.610 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6045 ; 7.541 ;35.610 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9251 27.7840 -38.2619 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.1641 REMARK 3 T33: 0.2649 T12: -0.0075 REMARK 3 T13: -0.0642 T23: -0.0436 REMARK 3 L TENSOR REMARK 3 L11: 4.3211 L22: 1.4756 REMARK 3 L33: 2.2072 L12: -0.0856 REMARK 3 L13: -1.8137 L23: 0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.1155 S12: 0.1228 S13: -0.1382 REMARK 3 S21: -0.0681 S22: -0.1368 S23: 0.2043 REMARK 3 S31: 0.0928 S32: -0.0855 S33: 0.0213 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 255 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4405 22.6602 2.9599 REMARK 3 T TENSOR REMARK 3 T11: 0.3078 T22: 0.4145 REMARK 3 T33: 0.2108 T12: -0.1146 REMARK 3 T13: 0.0838 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 3.4974 L22: 2.4855 REMARK 3 L33: 1.2426 L12: -2.1773 REMARK 3 L13: 1.2699 L23: -0.7417 REMARK 3 S TENSOR REMARK 3 S11: -0.1350 S12: -0.3476 S13: -0.2465 REMARK 3 S21: 0.4161 S22: 0.0471 S23: 0.1313 REMARK 3 S31: 0.0572 S32: -0.0533 S33: 0.0878 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 255 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5263 11.3598 -29.5827 REMARK 3 T TENSOR REMARK 3 T11: 0.0089 T22: 0.1644 REMARK 3 T33: 0.3798 T12: -0.0136 REMARK 3 T13: 0.0112 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.2564 L22: 1.2816 REMARK 3 L33: 4.3853 L12: 0.0791 REMARK 3 L13: 0.8980 L23: 0.5882 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: -0.0056 S13: -0.2273 REMARK 3 S21: 0.0459 S22: -0.1200 S23: -0.1601 REMARK 3 S31: 0.1081 S32: 0.1153 S33: 0.0474 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1108 X 1118 REMARK 3 ORIGIN FOR THE GROUP (A): -18.6223 41.0040 -51.4847 REMARK 3 T TENSOR REMARK 3 T11: 0.2981 T22: 0.3319 REMARK 3 T33: 0.3027 T12: 0.0842 REMARK 3 T13: 0.0380 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 8.7999 L22: 4.2875 REMARK 3 L33: 4.4204 L12: -0.6490 REMARK 3 L13: 5.8088 L23: 0.0620 REMARK 3 S TENSOR REMARK 3 S11: 0.2057 S12: 0.6018 S13: 0.2752 REMARK 3 S21: -0.3931 S22: -0.1644 S23: 0.0742 REMARK 3 S31: -0.1259 S32: 0.1110 S33: -0.0413 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Y 1109 Y 1118 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4836 39.4244 9.9734 REMARK 3 T TENSOR REMARK 3 T11: 0.4217 T22: 0.3751 REMARK 3 T33: 0.2985 T12: -0.0213 REMARK 3 T13: 0.0609 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 7.0943 L22: 4.1562 REMARK 3 L33: 15.5287 L12: -2.3265 REMARK 3 L13: 1.6293 L23: -7.6966 REMARK 3 S TENSOR REMARK 3 S11: -0.2590 S12: -0.4610 S13: -0.1869 REMARK 3 S21: 0.1786 S22: 0.2029 S23: 0.0554 REMARK 3 S31: -0.1882 S32: -0.1936 S33: 0.0561 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Z 1109 Z 1117 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6617 20.1094 -22.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.0728 T22: 0.2490 REMARK 3 T33: 0.4421 T12: -0.0819 REMARK 3 T13: -0.0390 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 7.3439 L22: 16.5777 REMARK 3 L33: 22.4500 L12: -10.4651 REMARK 3 L13: -9.0920 L23: 8.9177 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: 0.0476 S13: 0.0821 REMARK 3 S21: -0.0400 S22: -0.1632 S23: -0.4705 REMARK 3 S31: -0.3617 S32: 0.3615 S33: 0.0672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9VGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1300060648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24928 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 72.61050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.25400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.61050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.25400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, X, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 122 REMARK 465 VAL A 123 REMARK 465 GLU A 124 REMARK 465 SER A 186 REMARK 465 ASN A 187 REMARK 465 VAL A 188 REMARK 465 ASP A 189 REMARK 465 LYS A 190 REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 ASN B 95 REMARK 465 ALA B 96 REMARK 465 VAL B 123 REMARK 465 GLU B 124 REMARK 465 THR B 185 REMARK 465 SER B 186 REMARK 465 ASN B 187 REMARK 465 VAL B 188 REMARK 465 ASP B 189 REMARK 465 LYS B 190 REMARK 465 GLU B 191 REMARK 465 GLU B 192 REMARK 465 GLU B 193 REMARK 465 GLU B 256 REMARK 465 ASP B 257 REMARK 465 GLU B 258 REMARK 465 GLU B 259 REMARK 465 GLY B 260 REMARK 465 SER B 261 REMARK 465 SER C 186 REMARK 465 ASN C 187 REMARK 465 VAL C 188 REMARK 465 ASP C 189 REMARK 465 LYS C 190 REMARK 465 GLU C 191 REMARK 465 GLU C 192 REMARK 465 GLU C 256 REMARK 465 ASP C 257 REMARK 465 GLU C 258 REMARK 465 GLU C 259 REMARK 465 GLY C 260 REMARK 465 SER C 261 REMARK 465 HIS X 1119 REMARK 465 GLU X 1120 REMARK 465 SER Y 1108 REMARK 465 HIS Y 1119 REMARK 465 GLU Y 1120 REMARK 465 SER Z 1108 REMARK 465 LYS Z 1118 REMARK 465 HIS Z 1119 REMARK 465 GLU Z 1120 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 192 -33.64 74.99 REMARK 500 SER A 222 138.49 -177.45 REMARK 500 MET A 244 -54.73 -156.98 REMARK 500 ALA B 67 77.63 -108.60 REMARK 500 GLU B 93 32.38 -83.14 REMARK 500 LEU B 126 -92.80 -88.82 REMARK 500 LEU B 175 41.87 -99.26 REMARK 500 MET B 244 -44.04 -139.33 REMARK 500 SER C 39 129.62 -173.69 REMARK 500 ARG C 64 136.20 -173.86 REMARK 500 ALA C 67 77.38 -108.62 REMARK 500 ALA C 96 43.79 70.87 REMARK 500 LEU C 126 119.01 -26.50 REMARK 500 ALA C 163 -164.87 -112.66 REMARK 500 ALA C 194 -178.76 77.97 REMARK 500 PRO C 220 1.92 -62.59 REMARK 500 MET C 244 -40.69 -143.28 REMARK 500 REMARK 500 REMARK: NULL DBREF 9VGW A 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 9VGW B 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 9VGW C 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 9VGW X 1108 1120 UNP Q9UBZ9 REV1_HUMAN 1108 1120 DBREF 9VGW Y 1108 1120 UNP Q9UBZ9 REV1_HUMAN 1108 1120 DBREF 9VGW Z 1108 1120 UNP Q9UBZ9 REV1_HUMAN 1108 1120 SEQRES 1 A 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 A 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 A 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 A 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 A 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 A 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 A 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 A 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 A 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 A 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 A 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 A 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 A 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 A 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 A 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 A 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 A 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 A 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 A 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 A 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 A 261 SER SEQRES 1 B 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 B 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 B 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 B 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 B 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 B 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 B 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 B 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 B 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 B 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 B 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 B 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 B 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 B 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 B 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 B 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 B 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 B 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 B 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 B 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 B 261 SER SEQRES 1 C 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 C 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 C 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 C 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 C 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 C 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 C 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 C 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 C 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 C 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 C 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 C 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 C 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 C 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 C 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 C 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 C 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 C 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 C 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 C 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 C 261 SER SEQRES 1 X 13 SER PRO GLN LYS LEU ILE ASP GLY PHE LEU LYS HIS GLU SEQRES 1 Y 13 SER PRO GLN LYS LEU ILE ASP GLY PHE LEU LYS HIS GLU SEQRES 1 Z 13 SER PRO GLN LYS LEU ILE ASP GLY PHE LEU LYS HIS GLU FORMUL 7 HOH *30(H2 O) HELIX 1 AA1 GLY A 9 ASP A 21 1 13 HELIX 2 AA2 GLU A 55 PHE A 57 5 3 HELIX 3 AA3 LEU A 72 LYS A 80 1 9 HELIX 4 AA4 SER A 141 HIS A 153 1 13 HELIX 5 AA5 LEU A 209 THR A 216 1 8 HELIX 6 AA6 LYS A 217 SER A 222 5 6 HELIX 7 AA7 GLY B 9 ASP B 21 1 13 HELIX 8 AA8 GLU B 55 PHE B 57 5 3 HELIX 9 AA9 LEU B 72 CYS B 81 1 10 HELIX 10 AB1 SER B 141 HIS B 153 1 13 HELIX 11 AB2 LEU B 209 THR B 216 1 8 HELIX 12 AB3 LYS B 217 SER B 222 5 6 HELIX 13 AB4 GLY C 9 ASP C 21 1 13 HELIX 14 AB5 GLU C 55 PHE C 57 5 3 HELIX 15 AB6 LEU C 72 LYS C 80 1 9 HELIX 16 AB7 SER C 141 HIS C 153 1 13 HELIX 17 AB8 LEU C 209 THR C 216 1 8 HELIX 18 AB9 LYS C 217 SER C 222 5 6 HELIX 19 AC1 ILE X 1113 LEU X 1117 5 5 HELIX 20 AC2 LEU Z 1112 LEU Z 1117 5 6 SHEET 1 AA1 9 THR A 59 CYS A 62 0 SHEET 2 AA1 9 PHE A 2 LEU A 6 -1 N GLU A 3 O ARG A 61 SHEET 3 AA1 9 ILE A 87 ALA A 92 -1 O ILE A 88 N LEU A 6 SHEET 4 AA1 9 THR A 98 GLU A 104 -1 O ALA A 100 N ARG A 91 SHEET 5 AA1 9 LYS A 110 LYS A 117 -1 O MET A 116 N LEU A 99 SHEET 6 AA1 9 ASN B 177 SER B 183 -1 O ASN B 179 N ASP A 113 SHEET 7 AA1 9 GLY B 166 SER B 172 -1 N PHE B 169 O ILE B 180 SHEET 8 AA1 9 ALA B 157 CYS B 162 -1 N VAL B 159 O SER B 170 SHEET 9 AA1 9 VAL B 203 ALA B 208 -1 O PHE B 207 N VAL B 158 SHEET 1 AA2 9 LEU A 66 ASN A 71 0 SHEET 2 AA2 9 GLU A 25 SER A 31 -1 N ALA A 26 O VAL A 70 SHEET 3 AA2 9 GLY A 34 MET A 40 -1 O ASN A 36 N ASP A 29 SHEET 4 AA2 9 SER A 46 ARG A 53 -1 O LEU A 50 N LEU A 37 SHEET 5 AA2 9 GLY A 245 LEU A 251 -1 O TYR A 250 N LEU A 47 SHEET 6 AA2 9 LEU A 235 ILE A 241 -1 N ILE A 241 O GLY A 245 SHEET 7 AA2 9 THR A 224 MET A 229 -1 N THR A 226 O GLU A 238 SHEET 8 AA2 9 CYS A 135 PRO A 140 -1 N VAL A 137 O LEU A 227 SHEET 9 AA2 9 THR A 196 MET A 199 -1 O THR A 196 N LYS A 138 SHEET 1 AA3 9 VAL A 203 ALA A 208 0 SHEET 2 AA3 9 ALA A 157 CYS A 162 -1 N VAL A 158 O PHE A 207 SHEET 3 AA3 9 GLY A 166 SER A 172 -1 O LYS A 168 N SER A 161 SHEET 4 AA3 9 GLY A 176 SER A 183 -1 O LEU A 182 N VAL A 167 SHEET 5 AA3 9 LYS C 110 LYS C 117 -1 O ASP C 113 N ASN A 179 SHEET 6 AA3 9 THR C 98 GLU C 104 -1 N LEU C 99 O MET C 116 SHEET 7 AA3 9 ILE C 87 ALA C 92 -1 N ARG C 91 O ALA C 100 SHEET 8 AA3 9 PHE C 2 LEU C 6 -1 N LEU C 6 O ILE C 88 SHEET 9 AA3 9 THR C 59 CYS C 62 -1 O THR C 59 N ARG C 5 SHEET 1 AA4 9 THR B 59 CYS B 62 0 SHEET 2 AA4 9 PHE B 2 LEU B 6 -1 N ARG B 5 O THR B 59 SHEET 3 AA4 9 ILE B 87 ALA B 92 -1 O LEU B 90 N ALA B 4 SHEET 4 AA4 9 THR B 98 GLU B 104 -1 O ALA B 100 N ARG B 91 SHEET 5 AA4 9 LYS B 110 LYS B 117 -1 O TYR B 114 N LEU B 101 SHEET 6 AA4 9 GLY C 176 LEU C 182 -1 O LYS C 181 N VAL B 111 SHEET 7 AA4 9 VAL C 167 SER C 172 -1 N PHE C 169 O ILE C 180 SHEET 8 AA4 9 ALA C 157 CYS C 162 -1 N SER C 161 O LYS C 168 SHEET 9 AA4 9 VAL C 203 ALA C 208 -1 O LEU C 205 N ILE C 160 SHEET 1 AA5 9 LEU B 66 ASN B 71 0 SHEET 2 AA5 9 GLU B 25 SER B 31 -1 N TRP B 28 O MET B 68 SHEET 3 AA5 9 GLY B 34 MET B 40 -1 O ASN B 36 N ASP B 29 SHEET 4 AA5 9 SER B 46 ARG B 53 -1 O VAL B 48 N SER B 39 SHEET 5 AA5 9 GLY B 245 LEU B 251 -1 O LYS B 248 N GLN B 49 SHEET 6 AA5 9 LEU B 235 ILE B 241 -1 N TYR B 239 O LEU B 247 SHEET 7 AA5 9 THR B 224 MET B 229 -1 N THR B 226 O GLU B 238 SHEET 8 AA5 9 CYS B 135 PRO B 140 -1 N CYS B 135 O MET B 229 SHEET 9 AA5 9 THR B 196 ILE B 197 -1 O THR B 196 N LYS B 138 SHEET 1 AA610 MET C 119 ASP C 120 0 SHEET 2 AA610 LEU C 66 ASN C 71 -1 N GLY C 69 O MET C 119 SHEET 3 AA610 GLU C 25 SER C 31 -1 N ILE C 30 O LEU C 66 SHEET 4 AA610 GLY C 34 MET C 40 -1 O ASN C 36 N ASP C 29 SHEET 5 AA610 SER C 46 ARG C 53 -1 O LEU C 52 N VAL C 35 SHEET 6 AA610 GLY C 245 LEU C 251 -1 O LYS C 248 N GLN C 49 SHEET 7 AA610 LEU C 235 ILE C 241 -1 N VAL C 237 O TYR C 249 SHEET 8 AA610 THR C 224 MET C 229 -1 N THR C 226 O GLU C 238 SHEET 9 AA610 CYS C 135 PRO C 140 -1 N VAL C 137 O LEU C 227 SHEET 10 AA610 THR C 196 MET C 199 -1 O THR C 196 N LYS C 138 CRYST1 145.221 72.508 83.599 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011962 0.00000 MASTER 438 0 0 20 55 0 0 6 5940 6 0 66 END