HEADER VIRAL PROTEIN 19-JUN-25 9VJD TITLE CUCUMBER GREEN MOTTLE MOSAIC VIRUS (CGMMV) COAT PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COAT PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUCUMBER GREEN MOTTLE MOSAIC VIRUS (STRAIN SOURCE 3 WATERMELON SH); SOURCE 4 ORGANISM_COMMON: CGMMV; SOURCE 5 ORGANISM_TAXID: 12236; SOURCE 6 STRAIN: WATERMELON SH; SOURCE 7 GENE: CP; SOURCE 8 EXPRESSION_SYSTEM: LAGENARIA SICERARIA; SOURCE 9 EXPRESSION_SYSTEM_COMMON: WHITE-FLOWERED GOURD; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 3668 KEYWDS HELICAL, RNA VIRUS, COAT PROTEIN SUBUNIT, VIRUS, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR A.CHATTERJEE,A.VENKATASUBRAMANIAN,A.K.JAILANI,U.DAS,V.K.RAGUNATH, AUTHOR 2 B.MANDAL,P.P.DATTA REVDAT 1 15-JUL-26 9VJD 0 JRNL AUTH A.CHATTERJEE,A.VENKATASUBRAMANIAN,A.K.JAILANI,U.DAS, JRNL AUTH 2 V.K.RAGUNATH,B.MANDAL,P.P.DATTA JRNL TITL CUCUMBER GREEN MOTTLE MOSAIC VIRUS (CGMMV) COAT PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, CTFFIND, COOT, CRYOSPARC, REMARK 3 PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.860 REMARK 3 NUMBER OF PARTICLES : 2038 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9VJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-25. REMARK 100 THE DEPOSITION ID IS D_1300058529. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : CUCUMBER GREEN MOTTLE MOSAIC REMARK 245 VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3582.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 59000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 92 64.20 -100.73 REMARK 500 ASP A 99 133.19 -38.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-60696 RELATED DB: EMDB DBREF 9VJD A 2 156 UNP P69474 CAPSD_CGMVS 2 156 SEQRES 1 A 155 ALA TYR ASN PRO ILE THR PRO SER LYS LEU ILE ALA PHE SEQRES 2 A 155 SER ALA SER TYR VAL PRO VAL ARG THR LEU LEU ASN PHE SEQRES 3 A 155 LEU VAL ALA SER GLN GLY THR ALA PHE GLN THR GLN ALA SEQRES 4 A 155 GLY ARG ASP SER PHE ARG GLU SER LEU SER ALA LEU PRO SEQRES 5 A 155 SER SER VAL VAL ASP ILE ASN SER ARG PHE PRO ASP ALA SEQRES 6 A 155 GLY PHE TYR ALA PHE LEU ASN GLY PRO VAL LEU ARG PRO SEQRES 7 A 155 ILE PHE VAL SER LEU LEU SER SER THR ASP THR ARG ASN SEQRES 8 A 155 ARG VAL ILE GLU VAL VAL ASP PRO SER ASN PRO THR THR SEQRES 9 A 155 ALA GLU SER LEU ASN ALA VAL LYS ARG THR ASP ASP ALA SEQRES 10 A 155 SER THR ALA ALA ARG ALA GLU ILE ASP ASN LEU ILE GLU SEQRES 11 A 155 SER ILE SER LYS GLY PHE ASP VAL TYR ASP ARG ALA SER SEQRES 12 A 155 PHE GLU ALA ALA PHE SER VAL VAL TRP SER GLU ALA HELIX 1 AA1 THR A 7 SER A 15 5 9 HELIX 2 AA2 VAL A 21 SER A 31 1 11 HELIX 3 AA3 GLN A 32 THR A 34 5 3 HELIX 4 AA4 THR A 38 LEU A 52 1 15 HELIX 5 AA5 VAL A 76 ASP A 89 1 14 HELIX 6 AA6 ASN A 92 VAL A 98 1 7 HELIX 7 AA7 THR A 104 LYS A 135 1 32 HELIX 8 AA8 ASP A 141 SER A 150 1 10 SHEET 1 AA1 2 TYR A 3 ASN A 4 0 SHEET 2 AA1 2 VAL A 152 TRP A 153 -1 O VAL A 152 N ASN A 4 SHEET 1 AA2 3 TYR A 18 PRO A 20 0 SHEET 2 AA2 3 TYR A 69 PHE A 71 -1 O ALA A 70 N VAL A 19 SHEET 3 AA2 3 VAL A 139 TYR A 140 -1 O TYR A 140 N TYR A 69 CISPEP 1 ASN A 4 PRO A 5 0 -7.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 116 0 0 8 5 0 0 6 1186 1 0 12 END