data_9VP2 # _entry.id 9VP2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9VP2 pdb_00009vp2 10.2210/pdb9vp2/pdb WWPDB D_1300061114 ? ? EMDB EMD-65234 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-12-24 ? 2 'EM metadata' 1 0 2025-12-24 ? 3 'Additional map' 1 0 2025-12-24 1 4 FSC 1 0 2025-12-24 ? 5 'Half map' 1 0 2025-12-24 1 6 'Half map' 1 0 2025-12-24 2 7 Image 1 0 2025-12-24 ? 8 Mask 1 0 2025-12-24 1 9 'Primary map' 1 0 2025-12-24 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 Mask repository 'Initial release' ? ? 9 9 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9VP2 _pdbx_database_status.recvd_initial_deposition_date 2025-07-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'CryoEM structure of cyclised H-pilus (D69A)' _pdbx_database_related.db_id EMD-65234 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email konstantinos.beis@imperial.ac.uk _pdbx_contact_author.name_first Konstantinos _pdbx_contact_author.name_last Beis _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5727-4721 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ishimoto, N.' 1 0000-0001-8976-8582 'Beis, K.' 2 0000-0001-5727-4721 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Surface electrostatic potential affects mating pilus functionality' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'He, S.' 1 ? primary 'Ishimoto, N.' 2 ? primary 'Wong, J.' 3 ? primary 'David, S.' 4 ? primary 'Beis, K.' 5 ? primary 'Frankel, G.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Pilin 7557.932 1 ? D29A ? 'The last five residues of AGIPL are cleaved when H-pilus make cyclisation.' 2 non-polymer syn 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 722.970 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Pili assembly chaperone' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSDDGAFGDIWAYMSEALTGAPGKIIACGMLFSVAYFGVVKPNLGLALVSALMMLVMANGEKIISSFLAAGIPL _entity_poly.pdbx_seq_one_letter_code_can GSDDGAFGDIWAYMSEALTGAPGKIIACGMLFSVAYFGVVKPNLGLALVSALMMLVMANGEKIISSFLAAGIPL _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE _pdbx_entity_nonpoly.comp_id LHG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASP n 1 4 ASP n 1 5 GLY n 1 6 ALA n 1 7 PHE n 1 8 GLY n 1 9 ASP n 1 10 ILE n 1 11 TRP n 1 12 ALA n 1 13 TYR n 1 14 MET n 1 15 SER n 1 16 GLU n 1 17 ALA n 1 18 LEU n 1 19 THR n 1 20 GLY n 1 21 ALA n 1 22 PRO n 1 23 GLY n 1 24 LYS n 1 25 ILE n 1 26 ILE n 1 27 ALA n 1 28 CYS n 1 29 GLY n 1 30 MET n 1 31 LEU n 1 32 PHE n 1 33 SER n 1 34 VAL n 1 35 ALA n 1 36 TYR n 1 37 PHE n 1 38 GLY n 1 39 VAL n 1 40 VAL n 1 41 LYS n 1 42 PRO n 1 43 ASN n 1 44 LEU n 1 45 GLY n 1 46 LEU n 1 47 ALA n 1 48 LEU n 1 49 VAL n 1 50 SER n 1 51 ALA n 1 52 LEU n 1 53 MET n 1 54 MET n 1 55 LEU n 1 56 VAL n 1 57 MET n 1 58 ALA n 1 59 ASN n 1 60 GLY n 1 61 GLU n 1 62 LYS n 1 63 ILE n 1 64 ILE n 1 65 SER n 1 66 SER n 1 67 PHE n 1 68 LEU n 1 69 ALA n 1 70 ALA n 1 71 GLY n 1 72 ILE n 1 73 PRO n 1 74 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 74 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'trhA, HCM1.67' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name ' Salmonella enterica subsp. enterica serovar Typhi' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 90370 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LHG non-polymer . 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE ? 'C38 H75 O10 P' 722.970 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 TRP 11 11 11 TRP TRP A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 MET 14 14 14 MET MET A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 MET 57 57 57 MET MET A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ALA 70 70 ? ? ? A . n A 1 71 GLY 71 71 ? ? ? A . n A 1 72 ILE 72 72 ? ? ? A . n A 1 73 PRO 73 73 ? ? ? A . n A 1 74 LEU 74 74 ? ? ? A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id LHG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id LHG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id LHG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 101 _pdbx_nonpoly_scheme.pdb_mon_id LHG _pdbx_nonpoly_scheme.auth_mon_id LHG _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9VP2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9VP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9VP2 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9VP2 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.15 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 552 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.380 ? 734 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 12.817 ? 105 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.035 ? 81 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 84 ? f_plane_restr ? ? ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 generate ? 0.754710 -0.656059 0.000000 0.656059 0.754710 0.000000 0.000000 0.000000 1.000000 137.52430 -62.67343 -134.64000 2 generate ? -0.390731 -0.920505 0.000000 0.920505 -0.390731 0.000000 0.000000 0.000000 1.000000 352.63915 71.74525 -134.64000 3 generate ? -0.996195 0.087156 0.000000 -0.087156 -0.996195 0.000000 0.000000 0.000000 1.000000 291.27354 317.86929 -134.64000 4 generate ? -0.224951 0.974370 0.000000 -0.974370 -0.224951 0.000000 0.000000 0.000000 1.000000 38.23265 335.56363 -134.64000 5 generate ? 0.857167 0.515038 0.000000 -0.515038 0.857167 0.000000 0.000000 0.000000 1.000000 -56.78961 100.37529 -134.64000 6 generate ? 0.342020 -0.939693 0.000000 0.939693 0.342020 0.000000 0.000000 0.000000 1.000000 243.76648 -42.98261 -122.40000 7 generate ? -0.788011 -0.615661 0.000000 0.615661 -0.788011 0.000000 0.000000 0.000000 1.000000 366.74271 178.87237 -122.40000 8 generate ? -0.829038 0.559193 0.000000 -0.559193 -0.829038 0.000000 0.000000 0.000000 1.000000 193.74783 364.38667 -122.40000 9 generate ? 0.275637 0.961262 0.000000 -0.961262 0.275637 0.000000 0.000000 0.000000 1.000000 -36.14511 257.18583 -122.40000 10 generate ? 0.999391 0.034899 0.000000 -0.034899 0.999391 0.000000 0.000000 0.000000 1.000000 -5.23188 5.41777 -122.40000 11 generate ? -0.156434 -0.987688 0.000000 0.987688 -0.156434 0.000000 0.000000 0.000000 1.000000 327.14169 25.74661 -110.16000 12 generate ? -0.987688 -0.156434 0.000000 0.156434 -0.987688 0.000000 0.000000 0.000000 1.000000 327.14169 279.40540 -110.16000 13 generate ? -0.453990 0.891007 0.000000 -0.891007 -0.453990 0.000000 0.000000 0.000000 1.000000 85.89785 357.79028 -110.16000 14 generate ? 0.707107 0.707107 0.000000 -0.707107 0.707107 0.000000 0.000000 0.000000 1.000000 -63.19905 152.57600 -110.16000 15 generate ? 0.891007 -0.453990 0.000000 0.453990 0.891007 0.000000 0.000000 0.000000 1.000000 85.89785 -52.63827 -110.16000 16 generate ? -0.615661 -0.788011 0.000000 0.788011 -0.615661 0.000000 0.000000 0.000000 1.000000 366.74271 126.27964 -97.92000 17 generate ? -0.939693 0.342020 0.000000 -0.342020 -0.939693 0.000000 0.000000 0.000000 1.000000 243.76648 348.13462 -97.92000 18 generate ? 0.034899 0.999391 0.000000 -0.999391 0.034899 0.000000 0.000000 0.000000 1.000000 -5.23188 299.73424 -97.92000 19 generate ? 0.961262 0.275637 0.000000 -0.275637 0.961262 0.000000 0.000000 0.000000 1.000000 -36.14511 47.96618 -97.92000 20 generate ? 0.559193 -0.829038 0.000000 0.829038 0.559193 0.000000 0.000000 0.000000 1.000000 193.74783 -59.23466 -97.92000 21 generate ? -0.920505 -0.390731 0.000000 0.390731 -0.920505 0.000000 0.000000 0.000000 1.000000 352.63915 233.40676 -85.68000 22 generate ? -0.656059 0.754710 0.000000 -0.754710 -0.656059 0.000000 0.000000 0.000000 1.000000 137.52430 367.82544 -85.68000 23 generate ? 0.515038 0.857167 0.000000 -0.857167 0.515038 0.000000 0.000000 0.000000 1.000000 -56.78961 204.77672 -85.68000 24 generate ? 0.974370 -0.224951 0.000000 0.224951 0.974370 0.000000 0.000000 0.000000 1.000000 38.23265 -30.41162 -85.68000 25 generate ? 0.087156 -0.996195 0.000000 0.996195 0.087156 0.000000 0.000000 0.000000 1.000000 291.27354 -12.71728 -85.68000 26 generate ? -0.994522 0.104528 0.000000 -0.104528 -0.994522 0.000000 0.000000 0.000000 1.000000 288.36765 320.26472 -73.44000 27 generate ? -0.207912 0.978148 0.000000 -0.978148 -0.207912 0.000000 0.000000 0.000000 1.000000 35.05649 333.54019 -73.44000 28 generate ? 0.866025 0.500000 0.000000 -0.500000 0.866025 0.000000 0.000000 0.000000 1.000000 -55.84669 96.72931 -73.44000 29 generate ? 0.743145 -0.669131 0.000000 0.669131 0.743145 0.000000 0.000000 0.000000 1.000000 141.28321 -62.90334 -73.44000 30 generate ? -0.406737 -0.913545 0.000000 0.913545 -0.406737 0.000000 0.000000 0.000000 1.000000 354.01937 75.24914 -73.44000 31 generate ? -0.819152 0.573576 0.000000 -0.573576 -0.819152 0.000000 0.000000 0.000000 1.000000 190.04495 365.07295 -61.20000 32 generate ? 0.292372 0.956305 0.000000 -0.956305 0.292372 0.000000 0.000000 0.000000 1.000000 -37.94206 253.87626 -61.20000 33 generate ? 0.999848 0.017452 0.000000 -0.017452 0.999848 0.000000 0.000000 0.000000 1.000000 -2.63958 2.68606 -61.20000 34 generate ? 0.325568 -0.945519 0.000000 0.945519 0.325568 0.000000 0.000000 0.000000 1.000000 247.16556 -41.36133 -61.20000 35 generate ? -0.798636 -0.601815 0.000000 0.601815 -0.798636 0.000000 0.000000 0.000000 1.000000 366.25115 182.60609 -61.20000 36 generate ? -0.438371 0.898794 0.000000 -0.898794 -0.438371 0.000000 0.000000 0.000000 1.000000 82.32652 356.59533 -48.96000 37 generate ? 0.719340 0.694658 0.000000 -0.694658 0.719340 0.000000 0.000000 0.000000 1.000000 -63.16619 148.81021 -48.96000 38 generate ? 0.882948 -0.469472 0.000000 0.469472 0.882948 0.000000 0.000000 0.000000 1.000000 89.48948 -53.77071 -48.96000 39 generate ? -0.173648 -0.984808 0.000000 0.984808 -0.173648 0.000000 0.000000 0.000000 1.000000 329.32858 28.81252 -48.96000 40 generate ? -0.990268 -0.139173 0.000000 0.139173 -0.990268 0.000000 0.000000 0.000000 1.000000 324.90163 282.43268 -48.96000 41 generate ? 0.052336 0.998630 0.000000 -0.998630 0.052336 0.000000 0.000000 0.000000 1.000000 -7.77611 296.95770 -36.72000 42 generate ? 0.965926 0.258819 0.000000 -0.258819 0.965926 0.000000 0.000000 0.000000 1.000000 -34.29067 44.68848 -36.72000 43 generate ? 0.544639 -0.838671 0.000000 0.838671 0.544639 0.000000 0.000000 0.000000 1.000000 197.43816 -58.48385 -36.72000 44 generate ? -0.629320 -0.777146 0.000000 0.777146 -0.629320 0.000000 0.000000 0.000000 1.000000 367.16902 130.02137 -36.72000 45 generate ? -0.933580 0.358368 0.000000 -0.358368 -0.933580 0.000000 0.000000 0.000000 1.000000 240.33963 349.69633 -36.72000 46 generate ? 0.529919 0.848048 0.000000 -0.848048 0.529919 0.000000 0.000000 0.000000 1.000000 -57.66875 201.11483 -24.48000 47 generate ? 0.970296 -0.241922 0.000000 0.241922 0.970296 0.000000 0.000000 0.000000 1.000000 41.44364 -32.37932 -24.48000 48 generate ? 0.069756 -0.997564 0.000000 0.997564 0.069756 0.000000 0.000000 0.000000 1.000000 294.13718 -10.27150 -24.48000 49 generate ? -0.927184 -0.374607 0.000000 0.374607 -0.927184 0.000000 0.000000 0.000000 1.000000 351.19799 236.88604 -24.48000 50 generate ? -0.642788 0.766044 0.000000 -0.766044 -0.642788 0.000000 0.000000 0.000000 1.000000 133.76997 367.52997 -24.48000 51 generate ? 0.874620 0.484810 0.000000 -0.484810 0.874620 0.000000 0.000000 0.000000 1.000000 -54.84029 93.10034 -12.24000 52 generate ? 0.731354 -0.681998 0.000000 0.681998 0.731354 0.000000 0.000000 0.000000 1.000000 145.04556 -63.06761 -12.24000 53 generate ? -0.422618 -0.906308 0.000000 0.906308 -0.422618 0.000000 0.000000 0.000000 1.000000 355.33823 78.77659 -12.24000 54 generate ? -0.992546 0.121869 0.000000 -0.121869 -0.992546 0.000000 0.000000 0.000000 1.000000 285.42039 322.60907 -12.24000 55 generate ? -0.190809 0.981627 0.000000 -0.981627 -0.190809 0.000000 0.000000 0.000000 1.000000 31.91613 331.46163 -12.24000 57 generate ? 0.309017 -0.951057 0.000000 0.951057 0.309017 0.000000 0.000000 0.000000 1.000000 250.53583 -39.68098 0.00000 58 generate ? -0.809017 -0.587785 0.000000 0.587785 -0.809017 0.000000 0.000000 0.000000 1.000000 365.69451 186.33066 0.00000 59 generate ? -0.809017 0.587785 0.000000 -0.587785 -0.809017 0.000000 0.000000 0.000000 1.000000 186.33066 365.69451 0.00000 60 generate ? 0.309017 0.951057 0.000000 -0.951057 0.309017 0.000000 0.000000 0.000000 1.000000 -39.68098 250.53583 0.00000 61 generate ? 0.874620 -0.484810 0.000000 0.484810 0.874620 0.000000 0.000000 0.000000 1.000000 93.10034 -54.84029 12.24000 62 generate ? -0.190809 -0.981627 0.000000 0.981627 -0.190809 0.000000 0.000000 0.000000 1.000000 331.46163 31.91613 12.24000 63 generate ? -0.992546 -0.121869 0.000000 0.121869 -0.992546 0.000000 0.000000 0.000000 1.000000 322.60907 285.42039 12.24000 64 generate ? -0.422618 0.906308 0.000000 -0.906308 -0.422618 0.000000 0.000000 0.000000 1.000000 78.77659 355.33823 12.24000 65 generate ? 0.731354 0.681998 0.000000 -0.681998 0.731354 0.000000 0.000000 0.000000 1.000000 -63.06761 145.04556 12.24000 66 generate ? 0.529919 -0.848048 0.000000 0.848048 0.529919 0.000000 0.000000 0.000000 1.000000 201.11483 -57.66875 24.48000 67 generate ? -0.642788 -0.766044 0.000000 0.766044 -0.642788 0.000000 0.000000 0.000000 1.000000 367.52997 133.76997 24.48000 68 generate ? -0.927184 0.374607 0.000000 -0.374607 -0.927184 0.000000 0.000000 0.000000 1.000000 236.88604 351.19799 24.48000 69 generate ? 0.069756 0.997564 0.000000 -0.997564 0.069756 0.000000 0.000000 0.000000 1.000000 -10.27150 294.13718 24.48000 70 generate ? 0.970296 0.241922 0.000000 -0.241922 0.970296 0.000000 0.000000 0.000000 1.000000 -32.37932 41.44364 24.48000 71 generate ? 0.052336 -0.998630 0.000000 0.998630 0.052336 0.000000 0.000000 0.000000 1.000000 296.95770 -7.77611 36.72000 72 generate ? -0.933580 -0.358368 0.000000 0.358368 -0.933580 0.000000 0.000000 0.000000 1.000000 349.69633 240.33963 36.72000 73 generate ? -0.629320 0.777146 0.000000 -0.777146 -0.629320 0.000000 0.000000 0.000000 1.000000 130.02137 367.16902 36.72000 74 generate ? 0.544639 0.838671 0.000000 -0.838671 0.544639 0.000000 0.000000 0.000000 1.000000 -58.48385 197.43816 36.72000 75 generate ? 0.965926 -0.258819 0.000000 0.258819 0.965926 0.000000 0.000000 0.000000 1.000000 44.68848 -34.29067 36.72000 76 generate ? -0.438371 -0.898794 0.000000 0.898794 -0.438371 0.000000 0.000000 0.000000 1.000000 356.59533 82.32652 48.96000 77 generate ? -0.990268 0.139173 0.000000 -0.139173 -0.990268 0.000000 0.000000 0.000000 1.000000 282.43268 324.90163 48.96000 78 generate ? -0.173648 0.984808 0.000000 -0.984808 -0.173648 0.000000 0.000000 0.000000 1.000000 28.81252 329.32858 48.96000 79 generate ? 0.882948 0.469472 0.000000 -0.469472 0.882948 0.000000 0.000000 0.000000 1.000000 -53.77071 89.48948 48.96000 80 generate ? 0.719340 -0.694658 0.000000 0.694658 0.719340 0.000000 0.000000 0.000000 1.000000 148.81021 -63.16619 48.96000 81 generate ? -0.819152 -0.573576 0.000000 0.573576 -0.819152 0.000000 0.000000 0.000000 1.000000 365.07295 190.04495 61.20000 82 generate ? -0.798636 0.601815 0.000000 -0.601815 -0.798636 0.000000 0.000000 0.000000 1.000000 182.60609 366.25115 61.20000 83 generate ? 0.325568 0.945519 0.000000 -0.945519 0.325568 0.000000 0.000000 0.000000 1.000000 -41.36133 247.16556 61.20000 84 generate ? 0.999848 -0.017452 0.000000 0.017452 0.999848 0.000000 0.000000 0.000000 1.000000 2.68606 -2.63958 61.20000 85 generate ? 0.292372 -0.956305 0.000000 0.956305 0.292372 0.000000 0.000000 0.000000 1.000000 253.87626 -37.94206 61.20000 86 generate ? -0.994522 -0.104528 0.000000 0.104528 -0.994522 0.000000 0.000000 0.000000 1.000000 320.26472 288.36765 73.44000 87 generate ? -0.406737 0.913545 0.000000 -0.913545 -0.406737 0.000000 0.000000 0.000000 1.000000 75.24914 354.01937 73.44000 88 generate ? 0.743145 0.669131 0.000000 -0.669131 0.743145 0.000000 0.000000 0.000000 1.000000 -62.90334 141.28321 73.44000 89 generate ? 0.866025 -0.500000 0.000000 0.500000 0.866025 0.000000 0.000000 0.000000 1.000000 96.72931 -55.84669 73.44000 90 generate ? -0.207912 -0.978148 0.000000 0.978148 -0.207912 0.000000 0.000000 0.000000 1.000000 333.54019 35.05649 73.44000 91 generate ? -0.920505 0.390731 0.000000 -0.390731 -0.920505 0.000000 0.000000 0.000000 1.000000 233.40676 352.63915 85.68000 92 generate ? 0.087156 0.996195 0.000000 -0.996195 0.087156 0.000000 0.000000 0.000000 1.000000 -12.71728 291.27354 85.68000 93 generate ? 0.974370 0.224951 0.000000 -0.224951 0.974370 0.000000 0.000000 0.000000 1.000000 -30.41162 38.23265 85.68000 94 generate ? 0.515038 -0.857167 0.000000 0.857167 0.515038 0.000000 0.000000 0.000000 1.000000 204.77672 -56.78961 85.68000 95 generate ? -0.656059 -0.754710 0.000000 0.754710 -0.656059 0.000000 0.000000 0.000000 1.000000 367.82544 137.52430 85.68000 96 generate ? -0.615661 0.788011 0.000000 -0.788011 -0.615661 0.000000 0.000000 0.000000 1.000000 126.27964 366.74271 97.92000 97 generate ? 0.559193 0.829038 0.000000 -0.829038 0.559193 0.000000 0.000000 0.000000 1.000000 -59.23466 193.74783 97.92000 98 generate ? 0.961262 -0.275637 0.000000 0.275637 0.961262 0.000000 0.000000 0.000000 1.000000 47.96618 -36.14511 97.92000 99 generate ? 0.034899 -0.999391 0.000000 0.999391 0.034899 0.000000 0.000000 0.000000 1.000000 299.73424 -5.23188 97.92000 100 generate ? -0.939693 -0.342020 0.000000 0.342020 -0.939693 0.000000 0.000000 0.000000 1.000000 348.13462 243.76648 97.92000 101 generate ? -0.156434 0.987688 0.000000 -0.987688 -0.156434 0.000000 0.000000 0.000000 1.000000 25.74661 327.14169 110.16000 102 generate ? 0.891007 0.453990 0.000000 -0.453990 0.891007 0.000000 0.000000 0.000000 1.000000 -52.63827 85.89785 110.16000 103 generate ? 0.707107 -0.707107 0.000000 0.707107 0.707107 0.000000 0.000000 0.000000 1.000000 152.57600 -63.19905 110.16000 104 generate ? -0.453990 -0.891007 0.000000 0.891007 -0.453990 0.000000 0.000000 0.000000 1.000000 357.79028 85.89785 110.16000 105 generate ? -0.987688 0.156434 0.000000 -0.156434 -0.987688 0.000000 0.000000 0.000000 1.000000 279.40540 327.14169 110.16000 # _struct.entry_id 9VP2 _struct.title 'CryoEM structure of cyclised H-pilus (D69A)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9VP2 _struct_keywords.text 'pilus, conjugation, filament, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q935P5_SALTI _struct_ref.pdbx_db_accession Q935P5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GSDDGAFGDIWAYMSEALTGAPGKIIACGMLFSVAYFGVVKPNLGLALVSALMMLVMANGEKIISSFLDAGIPL _struct_ref.pdbx_align_begin 44 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9VP2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 74 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q935P5 _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 117 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 74 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 9VP2 _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 69 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q935P5 _struct_ref_seq_dif.db_mon_id ASP _struct_ref_seq_dif.pdbx_seq_db_seq_num 112 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 69 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 104-meric _pdbx_struct_assembly.oligomeric_count 104 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression ;1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104 ; _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'point symmetry operation' 1_555 x,y,z 0.754710 -0.656059 0.0 137.52430 0.656059 0.754710 0.0 -62.67343 0.0 0.0 1.0 -134.64000 2 'point symmetry operation' ? ? -0.390731 -0.920505 0.0 352.63915 0.920505 -0.390731 0.0 71.74525 0.0 0.0 1.0 -134.64000 3 'point symmetry operation' ? ? -0.996195 0.087156 0.0 291.27354 -0.087156 -0.996195 0.0 317.86929 0.0 0.0 1.0 -134.64000 4 'point symmetry operation' ? ? -0.224951 0.974370 0.0 38.23265 -0.974370 -0.224951 0.0 335.56363 0.0 0.0 1.0 -134.64000 5 'point symmetry operation' ? ? 0.857167 0.515038 0.0 -56.78961 -0.515038 0.857167 0.0 100.37529 0.0 0.0 1.0 -134.64000 6 'point symmetry operation' ? ? 0.342020 -0.939693 0.0 243.76648 0.939693 0.342020 0.0 -42.98261 0.0 0.0 1.0 -122.40000 7 'point symmetry operation' ? ? -0.788011 -0.615661 0.0 366.74271 0.615661 -0.788011 0.0 178.87237 0.0 0.0 1.0 -122.40000 8 'point symmetry operation' ? ? -0.829038 0.559193 0.0 193.74783 -0.559193 -0.829038 0.0 364.38667 0.0 0.0 1.0 -122.40000 9 'point symmetry operation' ? ? 0.275637 0.961262 0.0 -36.14511 -0.961262 0.275637 0.0 257.18583 0.0 0.0 1.0 -122.40000 10 'point symmetry operation' ? ? 0.999391 0.034899 0.0 -5.23188 -0.034899 0.999391 0.0 5.41777 0.0 0.0 1.0 -122.40000 11 'point symmetry operation' ? ? -0.156434 -0.987688 0.0 327.14169 0.987688 -0.156434 0.0 25.74661 0.0 0.0 1.0 -110.16000 12 'point symmetry operation' ? ? -0.987688 -0.156434 0.0 327.14169 0.156434 -0.987688 0.0 279.40540 0.0 0.0 1.0 -110.16000 13 'point symmetry operation' ? ? -0.453990 0.891007 0.0 85.89785 -0.891007 -0.453990 0.0 357.79028 0.0 0.0 1.0 -110.16000 14 'point symmetry operation' ? ? 0.707107 0.707107 0.0 -63.19905 -0.707107 0.707107 0.0 152.57600 0.0 0.0 1.0 -110.16000 15 'point symmetry operation' ? ? 0.891007 -0.453990 0.0 85.89785 0.453990 0.891007 0.0 -52.63827 0.0 0.0 1.0 -110.16000 16 'point symmetry operation' ? ? -0.615661 -0.788011 0.0 366.74271 0.788011 -0.615661 0.0 126.27964 0.0 0.0 1.0 -97.92000 17 'point symmetry operation' ? ? -0.939693 0.342020 0.0 243.76648 -0.342020 -0.939693 0.0 348.13462 0.0 0.0 1.0 -97.92000 18 'point symmetry operation' ? ? 0.034899 0.999391 0.0 -5.23188 -0.999391 0.034899 0.0 299.73424 0.0 0.0 1.0 -97.92000 19 'point symmetry operation' ? ? 0.961262 0.275637 0.0 -36.14511 -0.275637 0.961262 0.0 47.96618 0.0 0.0 1.0 -97.92000 20 'point symmetry operation' ? ? 0.559193 -0.829038 0.0 193.74783 0.829038 0.559193 0.0 -59.23466 0.0 0.0 1.0 -97.92000 21 'point symmetry operation' ? ? -0.920505 -0.390731 0.0 352.63915 0.390731 -0.920505 0.0 233.40676 0.0 0.0 1.0 -85.68000 22 'point symmetry operation' ? ? -0.656059 0.754710 0.0 137.52430 -0.754710 -0.656059 0.0 367.82544 0.0 0.0 1.0 -85.68000 23 'point symmetry operation' ? ? 0.515038 0.857167 0.0 -56.78961 -0.857167 0.515038 0.0 204.77672 0.0 0.0 1.0 -85.68000 24 'point symmetry operation' ? ? 0.974370 -0.224951 0.0 38.23265 0.224951 0.974370 0.0 -30.41162 0.0 0.0 1.0 -85.68000 25 'point symmetry operation' ? ? 0.087156 -0.996195 0.0 291.27354 0.996195 0.087156 0.0 -12.71728 0.0 0.0 1.0 -85.68000 26 'point symmetry operation' ? ? -0.994522 0.104528 0.0 288.36765 -0.104528 -0.994522 0.0 320.26472 0.0 0.0 1.0 -73.44000 27 'point symmetry operation' ? ? -0.207912 0.978148 0.0 35.05649 -0.978148 -0.207912 0.0 333.54019 0.0 0.0 1.0 -73.44000 28 'point symmetry operation' ? ? 0.866025 0.500000 0.0 -55.84669 -0.500000 0.866025 0.0 96.72931 0.0 0.0 1.0 -73.44000 29 'point symmetry operation' ? ? 0.743145 -0.669131 0.0 141.28321 0.669131 0.743145 0.0 -62.90334 0.0 0.0 1.0 -73.44000 30 'point symmetry operation' ? ? -0.406737 -0.913545 0.0 354.01937 0.913545 -0.406737 0.0 75.24914 0.0 0.0 1.0 -73.44000 31 'point symmetry operation' ? ? -0.819152 0.573576 0.0 190.04495 -0.573576 -0.819152 0.0 365.07295 0.0 0.0 1.0 -61.20000 32 'point symmetry operation' ? ? 0.292372 0.956305 0.0 -37.94206 -0.956305 0.292372 0.0 253.87626 0.0 0.0 1.0 -61.20000 33 'point symmetry operation' ? ? 0.999848 0.017452 0.0 -2.63958 -0.017452 0.999848 0.0 2.68606 0.0 0.0 1.0 -61.20000 34 'point symmetry operation' ? ? 0.325568 -0.945519 0.0 247.16556 0.945519 0.325568 0.0 -41.36133 0.0 0.0 1.0 -61.20000 35 'point symmetry operation' ? ? -0.798636 -0.601815 0.0 366.25115 0.601815 -0.798636 0.0 182.60609 0.0 0.0 1.0 -61.20000 36 'point symmetry operation' ? ? -0.438371 0.898794 0.0 82.32652 -0.898794 -0.438371 0.0 356.59533 0.0 0.0 1.0 -48.96000 37 'point symmetry operation' ? ? 0.719340 0.694658 0.0 -63.16619 -0.694658 0.719340 0.0 148.81021 0.0 0.0 1.0 -48.96000 38 'point symmetry operation' ? ? 0.882948 -0.469472 0.0 89.48948 0.469472 0.882948 0.0 -53.77071 0.0 0.0 1.0 -48.96000 39 'point symmetry operation' ? ? -0.173648 -0.984808 0.0 329.32858 0.984808 -0.173648 0.0 28.81252 0.0 0.0 1.0 -48.96000 40 'point symmetry operation' ? ? -0.990268 -0.139173 0.0 324.90163 0.139173 -0.990268 0.0 282.43268 0.0 0.0 1.0 -48.96000 41 'point symmetry operation' ? ? 0.052336 0.998630 0.0 -7.77611 -0.998630 0.052336 0.0 296.95770 0.0 0.0 1.0 -36.72000 42 'point symmetry operation' ? ? 0.965926 0.258819 0.0 -34.29067 -0.258819 0.965926 0.0 44.68848 0.0 0.0 1.0 -36.72000 43 'point symmetry operation' ? ? 0.544639 -0.838671 0.0 197.43816 0.838671 0.544639 0.0 -58.48385 0.0 0.0 1.0 -36.72000 44 'point symmetry operation' ? ? -0.629320 -0.777146 0.0 367.16902 0.777146 -0.629320 0.0 130.02137 0.0 0.0 1.0 -36.72000 45 'point symmetry operation' ? ? -0.933580 0.358368 0.0 240.33963 -0.358368 -0.933580 0.0 349.69633 0.0 0.0 1.0 -36.72000 46 'point symmetry operation' ? ? 0.529919 0.848048 0.0 -57.66875 -0.848048 0.529919 0.0 201.11483 0.0 0.0 1.0 -24.48000 47 'point symmetry operation' ? ? 0.970296 -0.241922 0.0 41.44364 0.241922 0.970296 0.0 -32.37932 0.0 0.0 1.0 -24.48000 48 'point symmetry operation' ? ? 0.069756 -0.997564 0.0 294.13718 0.997564 0.069756 0.0 -10.27150 0.0 0.0 1.0 -24.48000 49 'point symmetry operation' ? ? -0.927184 -0.374607 0.0 351.19799 0.374607 -0.927184 0.0 236.88604 0.0 0.0 1.0 -24.48000 50 'point symmetry operation' ? ? -0.642788 0.766044 0.0 133.76997 -0.766044 -0.642788 0.0 367.52997 0.0 0.0 1.0 -24.48000 51 'point symmetry operation' ? ? 0.874620 0.484810 0.0 -54.84029 -0.484810 0.874620 0.0 93.10034 0.0 0.0 1.0 -12.24000 52 'point symmetry operation' ? ? 0.731354 -0.681998 0.0 145.04556 0.681998 0.731354 0.0 -63.06761 0.0 0.0 1.0 -12.24000 53 'point symmetry operation' ? ? -0.422618 -0.906308 0.0 355.33823 0.906308 -0.422618 0.0 78.77659 0.0 0.0 1.0 -12.24000 54 'point symmetry operation' ? ? -0.992546 0.121869 0.0 285.42039 -0.121869 -0.992546 0.0 322.60907 0.0 0.0 1.0 -12.24000 55 'point symmetry operation' ? ? -0.190809 0.981627 0.0 31.91613 -0.981627 -0.190809 0.0 331.46163 0.0 0.0 1.0 -12.24000 56 'point symmetry operation' ? ? 0.309017 -0.951057 0.0 250.53583 0.951057 0.309017 0.0 -39.68098 0.0 0.0 1.0 0.0 57 'point symmetry operation' ? ? -0.809017 -0.587785 0.0 365.69451 0.587785 -0.809017 0.0 186.33066 0.0 0.0 1.0 0.0 58 'point symmetry operation' ? ? -0.809017 0.587785 0.0 186.33066 -0.587785 -0.809017 0.0 365.69451 0.0 0.0 1.0 0.0 59 'point symmetry operation' ? ? 0.309017 0.951057 0.0 -39.68098 -0.951057 0.309017 0.0 250.53583 0.0 0.0 1.0 0.0 60 'point symmetry operation' ? ? 0.874620 -0.484810 0.0 93.10034 0.484810 0.874620 0.0 -54.84029 0.0 0.0 1.0 12.24000 61 'point symmetry operation' ? ? -0.190809 -0.981627 0.0 331.46163 0.981627 -0.190809 0.0 31.91613 0.0 0.0 1.0 12.24000 62 'point symmetry operation' ? ? -0.992546 -0.121869 0.0 322.60907 0.121869 -0.992546 0.0 285.42039 0.0 0.0 1.0 12.24000 63 'point symmetry operation' ? ? -0.422618 0.906308 0.0 78.77659 -0.906308 -0.422618 0.0 355.33823 0.0 0.0 1.0 12.24000 64 'point symmetry operation' ? ? 0.731354 0.681998 0.0 -63.06761 -0.681998 0.731354 0.0 145.04556 0.0 0.0 1.0 12.24000 65 'point symmetry operation' ? ? 0.529919 -0.848048 0.0 201.11483 0.848048 0.529919 0.0 -57.66875 0.0 0.0 1.0 24.48000 66 'point symmetry operation' ? ? -0.642788 -0.766044 0.0 367.52997 0.766044 -0.642788 0.0 133.76997 0.0 0.0 1.0 24.48000 67 'point symmetry operation' ? ? -0.927184 0.374607 0.0 236.88604 -0.374607 -0.927184 0.0 351.19799 0.0 0.0 1.0 24.48000 68 'point symmetry operation' ? ? 0.069756 0.997564 0.0 -10.27150 -0.997564 0.069756 0.0 294.13718 0.0 0.0 1.0 24.48000 69 'point symmetry operation' ? ? 0.970296 0.241922 0.0 -32.37932 -0.241922 0.970296 0.0 41.44364 0.0 0.0 1.0 24.48000 70 'point symmetry operation' ? ? 0.052336 -0.998630 0.0 296.95770 0.998630 0.052336 0.0 -7.77611 0.0 0.0 1.0 36.72000 71 'point symmetry operation' ? ? -0.933580 -0.358368 0.0 349.69633 0.358368 -0.933580 0.0 240.33963 0.0 0.0 1.0 36.72000 72 'point symmetry operation' ? ? -0.629320 0.777146 0.0 130.02137 -0.777146 -0.629320 0.0 367.16902 0.0 0.0 1.0 36.72000 73 'point symmetry operation' ? ? 0.544639 0.838671 0.0 -58.48385 -0.838671 0.544639 0.0 197.43816 0.0 0.0 1.0 36.72000 74 'point symmetry operation' ? ? 0.965926 -0.258819 0.0 44.68848 0.258819 0.965926 0.0 -34.29067 0.0 0.0 1.0 36.72000 75 'point symmetry operation' ? ? -0.438371 -0.898794 0.0 356.59533 0.898794 -0.438371 0.0 82.32652 0.0 0.0 1.0 48.96000 76 'point symmetry operation' ? ? -0.990268 0.139173 0.0 282.43268 -0.139173 -0.990268 0.0 324.90163 0.0 0.0 1.0 48.96000 77 'point symmetry operation' ? ? -0.173648 0.984808 0.0 28.81252 -0.984808 -0.173648 0.0 329.32858 0.0 0.0 1.0 48.96000 78 'point symmetry operation' ? ? 0.882948 0.469472 0.0 -53.77071 -0.469472 0.882948 0.0 89.48948 0.0 0.0 1.0 48.96000 79 'point symmetry operation' ? ? 0.719340 -0.694658 0.0 148.81021 0.694658 0.719340 0.0 -63.16619 0.0 0.0 1.0 48.96000 80 'point symmetry operation' ? ? -0.819152 -0.573576 0.0 365.07295 0.573576 -0.819152 0.0 190.04495 0.0 0.0 1.0 61.20000 81 'point symmetry operation' ? ? -0.798636 0.601815 0.0 182.60609 -0.601815 -0.798636 0.0 366.25115 0.0 0.0 1.0 61.20000 82 'point symmetry operation' ? ? 0.325568 0.945519 0.0 -41.36133 -0.945519 0.325568 0.0 247.16556 0.0 0.0 1.0 61.20000 83 'point symmetry operation' ? ? 0.999848 -0.017452 0.0 2.68606 0.017452 0.999848 0.0 -2.63958 0.0 0.0 1.0 61.20000 84 'point symmetry operation' ? ? 0.292372 -0.956305 0.0 253.87626 0.956305 0.292372 0.0 -37.94206 0.0 0.0 1.0 61.20000 85 'point symmetry operation' ? ? -0.994522 -0.104528 0.0 320.26472 0.104528 -0.994522 0.0 288.36765 0.0 0.0 1.0 73.44000 86 'point symmetry operation' ? ? -0.406737 0.913545 0.0 75.24914 -0.913545 -0.406737 0.0 354.01937 0.0 0.0 1.0 73.44000 87 'point symmetry operation' ? ? 0.743145 0.669131 0.0 -62.90334 -0.669131 0.743145 0.0 141.28321 0.0 0.0 1.0 73.44000 88 'point symmetry operation' ? ? 0.866025 -0.500000 0.0 96.72931 0.500000 0.866025 0.0 -55.84669 0.0 0.0 1.0 73.44000 89 'point symmetry operation' ? ? -0.207912 -0.978148 0.0 333.54019 0.978148 -0.207912 0.0 35.05649 0.0 0.0 1.0 73.44000 90 'point symmetry operation' ? ? -0.920505 0.390731 0.0 233.40676 -0.390731 -0.920505 0.0 352.63915 0.0 0.0 1.0 85.68000 91 'point symmetry operation' ? ? 0.087156 0.996195 0.0 -12.71728 -0.996195 0.087156 0.0 291.27354 0.0 0.0 1.0 85.68000 92 'point symmetry operation' ? ? 0.974370 0.224951 0.0 -30.41162 -0.224951 0.974370 0.0 38.23265 0.0 0.0 1.0 85.68000 93 'point symmetry operation' ? ? 0.515038 -0.857167 0.0 204.77672 0.857167 0.515038 0.0 -56.78961 0.0 0.0 1.0 85.68000 94 'point symmetry operation' ? ? -0.656059 -0.754710 0.0 367.82544 0.754710 -0.656059 0.0 137.52430 0.0 0.0 1.0 85.68000 95 'point symmetry operation' ? ? -0.615661 0.788011 0.0 126.27964 -0.788011 -0.615661 0.0 366.74271 0.0 0.0 1.0 97.92000 96 'point symmetry operation' ? ? 0.559193 0.829038 0.0 -59.23466 -0.829038 0.559193 0.0 193.74783 0.0 0.0 1.0 97.92000 97 'point symmetry operation' ? ? 0.961262 -0.275637 0.0 47.96618 0.275637 0.961262 0.0 -36.14511 0.0 0.0 1.0 97.92000 98 'point symmetry operation' ? ? 0.034899 -0.999391 0.0 299.73424 0.999391 0.034899 0.0 -5.23188 0.0 0.0 1.0 97.92000 99 'point symmetry operation' ? ? -0.939693 -0.342020 0.0 348.13462 0.342020 -0.939693 0.0 243.76648 0.0 0.0 1.0 97.92000 100 'point symmetry operation' ? ? -0.156434 0.987688 0.0 25.74661 -0.987688 -0.156434 0.0 327.14169 0.0 0.0 1.0 110.16000 101 'point symmetry operation' ? ? 0.891007 0.453990 0.0 -52.63827 -0.453990 0.891007 0.0 85.89785 0.0 0.0 1.0 110.16000 102 'point symmetry operation' ? ? 0.707107 -0.707107 0.0 152.57600 0.707107 0.707107 0.0 -63.19905 0.0 0.0 1.0 110.16000 103 'point symmetry operation' ? ? -0.453990 -0.891007 0.0 357.79028 0.891007 -0.453990 0.0 85.89785 0.0 0.0 1.0 110.16000 104 'point symmetry operation' ? ? -0.987688 0.156434 0.0 279.40540 -0.156434 -0.987688 0.0 327.14169 0.0 0.0 1.0 110.16000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 7 ? THR A 19 ? PHE A 7 THR A 19 1 ? 13 HELX_P HELX_P2 AA2 GLY A 20 ? GLY A 38 ? GLY A 20 GLY A 38 1 ? 19 HELX_P HELX_P3 AA3 LEU A 44 ? ASN A 59 ? LEU A 44 ASN A 59 1 ? 16 HELX_P HELX_P4 AA4 ASN A 59 ? LEU A 68 ? ASN A 59 LEU A 68 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag both _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_label_atom_id N _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id ALA _struct_conn.ptnr2_label_seq_id 69 _struct_conn.ptnr2_label_atom_id C _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ALA _struct_conn.ptnr2_auth_seq_id 69 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id GLY _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 1 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id ALA _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 69 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id GLY _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 1 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id ALA _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 69 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom N _pdbx_modification_feature.modified_residue_id_linking_atom C _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Non-standard linkage' # _pdbx_entry_details.entry_id 9VP2 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLY _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ALA _pdbx_validate_close_contact.auth_seq_id_2 69 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.92 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9VP2 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9VP2 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.15 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 420903 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name 'Pilus (D69A)' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9VP2 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9VP2 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9VP2 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 70 ? A ALA 70 2 1 Y 1 A GLY 71 ? A GLY 71 3 1 Y 1 A ILE 72 ? A ILE 72 4 1 Y 1 A PRO 73 ? A PRO 73 5 1 Y 1 A LEU 74 ? A LEU 74 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 CYS N N N N 47 CYS CA C N R 48 CYS C C N N 49 CYS O O N N 50 CYS CB C N N 51 CYS SG S N N 52 CYS OXT O N N 53 CYS H H N N 54 CYS H2 H N N 55 CYS HA H N N 56 CYS HB2 H N N 57 CYS HB3 H N N 58 CYS HG H N N 59 CYS HXT H N N 60 GLU N N N N 61 GLU CA C N S 62 GLU C C N N 63 GLU O O N N 64 GLU CB C N N 65 GLU CG C N N 66 GLU CD C N N 67 GLU OE1 O N N 68 GLU OE2 O N N 69 GLU OXT O N N 70 GLU H H N N 71 GLU H2 H N N 72 GLU HA H N N 73 GLU HB2 H N N 74 GLU HB3 H N N 75 GLU HG2 H N N 76 GLU HG3 H N N 77 GLU HE2 H N N 78 GLU HXT H N N 79 GLY N N N N 80 GLY CA C N N 81 GLY C C N N 82 GLY O O N N 83 GLY OXT O N N 84 GLY H H N N 85 GLY H2 H N N 86 GLY HA2 H N N 87 GLY HA3 H N N 88 GLY HXT H N N 89 ILE N N N N 90 ILE CA C N S 91 ILE C C N N 92 ILE O O N N 93 ILE CB C N S 94 ILE CG1 C N N 95 ILE CG2 C N N 96 ILE CD1 C N N 97 ILE OXT O N N 98 ILE H H N N 99 ILE H2 H N N 100 ILE HA H N N 101 ILE HB H N N 102 ILE HG12 H N N 103 ILE HG13 H N N 104 ILE HG21 H N N 105 ILE HG22 H N N 106 ILE HG23 H N N 107 ILE HD11 H N N 108 ILE HD12 H N N 109 ILE HD13 H N N 110 ILE HXT H N N 111 LEU N N N N 112 LEU CA C N S 113 LEU C C N N 114 LEU O O N N 115 LEU CB C N N 116 LEU CG C N N 117 LEU CD1 C N N 118 LEU CD2 C N N 119 LEU OXT O N N 120 LEU H H N N 121 LEU H2 H N N 122 LEU HA H N N 123 LEU HB2 H N N 124 LEU HB3 H N N 125 LEU HG H N N 126 LEU HD11 H N N 127 LEU HD12 H N N 128 LEU HD13 H N N 129 LEU HD21 H N N 130 LEU HD22 H N N 131 LEU HD23 H N N 132 LEU HXT H N N 133 LHG O1 O N N 134 LHG C1 C N N 135 LHG C2 C N S 136 LHG O2 O N N 137 LHG C3 C N N 138 LHG O3 O N N 139 LHG P P N S 140 LHG O4 O N N 141 LHG O5 O N N 142 LHG O6 O N N 143 LHG C4 C N N 144 LHG C5 C N R 145 LHG C6 C N N 146 LHG O7 O N N 147 LHG C7 C N N 148 LHG O9 O N N 149 LHG C8 C N N 150 LHG C9 C N N 151 LHG C10 C N N 152 LHG O8 O N N 153 LHG C23 C N N 154 LHG O10 O N N 155 LHG C24 C N N 156 LHG C11 C N N 157 LHG C12 C N N 158 LHG C13 C N N 159 LHG C14 C N N 160 LHG C15 C N N 161 LHG C16 C N N 162 LHG C17 C N N 163 LHG C18 C N N 164 LHG C19 C N N 165 LHG C20 C N N 166 LHG C21 C N N 167 LHG C22 C N N 168 LHG C25 C N N 169 LHG C26 C N N 170 LHG C27 C N N 171 LHG C28 C N N 172 LHG C29 C N N 173 LHG C30 C N N 174 LHG C31 C N N 175 LHG C32 C N N 176 LHG C33 C N N 177 LHG C34 C N N 178 LHG C35 C N N 179 LHG C36 C N N 180 LHG C37 C N N 181 LHG C38 C N N 182 LHG HO1 H N N 183 LHG HC11 H N N 184 LHG HC12 H N N 185 LHG HC2 H N N 186 LHG H02 H N N 187 LHG HC31 H N N 188 LHG HC32 H N N 189 LHG HO4 H N N 190 LHG HC41 H N N 191 LHG HC42 H N N 192 LHG HC5 H N N 193 LHG HC61 H N N 194 LHG HC62 H N N 195 LHG HC81 H N N 196 LHG HC82 H N N 197 LHG HC91 H N N 198 LHG HC92 H N N 199 LHG H101 H N N 200 LHG H102 H N N 201 LHG H241 H N N 202 LHG H242 H N N 203 LHG H111 H N N 204 LHG H112 H N N 205 LHG H121 H N N 206 LHG H122 H N N 207 LHG H131 H N N 208 LHG H132 H N N 209 LHG H141 H N N 210 LHG H142 H N N 211 LHG H151 H N N 212 LHG H152 H N N 213 LHG H161 H N N 214 LHG H162 H N N 215 LHG H171 H N N 216 LHG H172 H N N 217 LHG H181 H N N 218 LHG H182 H N N 219 LHG H191 H N N 220 LHG H192 H N N 221 LHG H201 H N N 222 LHG H202 H N N 223 LHG H211 H N N 224 LHG H212 H N N 225 LHG H221 H N N 226 LHG H222 H N N 227 LHG H223 H N N 228 LHG H251 H N N 229 LHG H252 H N N 230 LHG H261 H N N 231 LHG H262 H N N 232 LHG H271 H N N 233 LHG H272 H N N 234 LHG H281 H N N 235 LHG H282 H N N 236 LHG H291 H N N 237 LHG H292 H N N 238 LHG H301 H N N 239 LHG H302 H N N 240 LHG H311 H N N 241 LHG H312 H N N 242 LHG H321 H N N 243 LHG H322 H N N 244 LHG H331 H N N 245 LHG H332 H N N 246 LHG H341 H N N 247 LHG H342 H N N 248 LHG H351 H N N 249 LHG H352 H N N 250 LHG H361 H N N 251 LHG H362 H N N 252 LHG H371 H N N 253 LHG H372 H N N 254 LHG H381 H N N 255 LHG H382 H N N 256 LHG H383 H N N 257 LYS N N N N 258 LYS CA C N S 259 LYS C C N N 260 LYS O O N N 261 LYS CB C N N 262 LYS CG C N N 263 LYS CD C N N 264 LYS CE C N N 265 LYS NZ N N N 266 LYS OXT O N N 267 LYS H H N N 268 LYS H2 H N N 269 LYS HA H N N 270 LYS HB2 H N N 271 LYS HB3 H N N 272 LYS HG2 H N N 273 LYS HG3 H N N 274 LYS HD2 H N N 275 LYS HD3 H N N 276 LYS HE2 H N N 277 LYS HE3 H N N 278 LYS HZ1 H N N 279 LYS HZ2 H N N 280 LYS HZ3 H N N 281 LYS HXT H N N 282 MET N N N N 283 MET CA C N S 284 MET C C N N 285 MET O O N N 286 MET CB C N N 287 MET CG C N N 288 MET SD S N N 289 MET CE C N N 290 MET OXT O N N 291 MET H H N N 292 MET H2 H N N 293 MET HA H N N 294 MET HB2 H N N 295 MET HB3 H N N 296 MET HG2 H N N 297 MET HG3 H N N 298 MET HE1 H N N 299 MET HE2 H N N 300 MET HE3 H N N 301 MET HXT H N N 302 PHE N N N N 303 PHE CA C N S 304 PHE C C N N 305 PHE O O N N 306 PHE CB C N N 307 PHE CG C Y N 308 PHE CD1 C Y N 309 PHE CD2 C Y N 310 PHE CE1 C Y N 311 PHE CE2 C Y N 312 PHE CZ C Y N 313 PHE OXT O N N 314 PHE H H N N 315 PHE H2 H N N 316 PHE HA H N N 317 PHE HB2 H N N 318 PHE HB3 H N N 319 PHE HD1 H N N 320 PHE HD2 H N N 321 PHE HE1 H N N 322 PHE HE2 H N N 323 PHE HZ H N N 324 PHE HXT H N N 325 PRO N N N N 326 PRO CA C N S 327 PRO C C N N 328 PRO O O N N 329 PRO CB C N N 330 PRO CG C N N 331 PRO CD C N N 332 PRO OXT O N N 333 PRO H H N N 334 PRO HA H N N 335 PRO HB2 H N N 336 PRO HB3 H N N 337 PRO HG2 H N N 338 PRO HG3 H N N 339 PRO HD2 H N N 340 PRO HD3 H N N 341 PRO HXT H N N 342 SER N N N N 343 SER CA C N S 344 SER C C N N 345 SER O O N N 346 SER CB C N N 347 SER OG O N N 348 SER OXT O N N 349 SER H H N N 350 SER H2 H N N 351 SER HA H N N 352 SER HB2 H N N 353 SER HB3 H N N 354 SER HG H N N 355 SER HXT H N N 356 THR N N N N 357 THR CA C N S 358 THR C C N N 359 THR O O N N 360 THR CB C N R 361 THR OG1 O N N 362 THR CG2 C N N 363 THR OXT O N N 364 THR H H N N 365 THR H2 H N N 366 THR HA H N N 367 THR HB H N N 368 THR HG1 H N N 369 THR HG21 H N N 370 THR HG22 H N N 371 THR HG23 H N N 372 THR HXT H N N 373 TRP N N N N 374 TRP CA C N S 375 TRP C C N N 376 TRP O O N N 377 TRP CB C N N 378 TRP CG C Y N 379 TRP CD1 C Y N 380 TRP CD2 C Y N 381 TRP NE1 N Y N 382 TRP CE2 C Y N 383 TRP CE3 C Y N 384 TRP CZ2 C Y N 385 TRP CZ3 C Y N 386 TRP CH2 C Y N 387 TRP OXT O N N 388 TRP H H N N 389 TRP H2 H N N 390 TRP HA H N N 391 TRP HB2 H N N 392 TRP HB3 H N N 393 TRP HD1 H N N 394 TRP HE1 H N N 395 TRP HE3 H N N 396 TRP HZ2 H N N 397 TRP HZ3 H N N 398 TRP HH2 H N N 399 TRP HXT H N N 400 TYR N N N N 401 TYR CA C N S 402 TYR C C N N 403 TYR O O N N 404 TYR CB C N N 405 TYR CG C Y N 406 TYR CD1 C Y N 407 TYR CD2 C Y N 408 TYR CE1 C Y N 409 TYR CE2 C Y N 410 TYR CZ C Y N 411 TYR OH O N N 412 TYR OXT O N N 413 TYR H H N N 414 TYR H2 H N N 415 TYR HA H N N 416 TYR HB2 H N N 417 TYR HB3 H N N 418 TYR HD1 H N N 419 TYR HD2 H N N 420 TYR HE1 H N N 421 TYR HE2 H N N 422 TYR HH H N N 423 TYR HXT H N N 424 VAL N N N N 425 VAL CA C N S 426 VAL C C N N 427 VAL O O N N 428 VAL CB C N N 429 VAL CG1 C N N 430 VAL CG2 C N N 431 VAL OXT O N N 432 VAL H H N N 433 VAL H2 H N N 434 VAL HA H N N 435 VAL HB H N N 436 VAL HG11 H N N 437 VAL HG12 H N N 438 VAL HG13 H N N 439 VAL HG21 H N N 440 VAL HG22 H N N 441 VAL HG23 H N N 442 VAL HXT H N N 443 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 CYS N CA sing N N 44 CYS N H sing N N 45 CYS N H2 sing N N 46 CYS CA C sing N N 47 CYS CA CB sing N N 48 CYS CA HA sing N N 49 CYS C O doub N N 50 CYS C OXT sing N N 51 CYS CB SG sing N N 52 CYS CB HB2 sing N N 53 CYS CB HB3 sing N N 54 CYS SG HG sing N N 55 CYS OXT HXT sing N N 56 GLU N CA sing N N 57 GLU N H sing N N 58 GLU N H2 sing N N 59 GLU CA C sing N N 60 GLU CA CB sing N N 61 GLU CA HA sing N N 62 GLU C O doub N N 63 GLU C OXT sing N N 64 GLU CB CG sing N N 65 GLU CB HB2 sing N N 66 GLU CB HB3 sing N N 67 GLU CG CD sing N N 68 GLU CG HG2 sing N N 69 GLU CG HG3 sing N N 70 GLU CD OE1 doub N N 71 GLU CD OE2 sing N N 72 GLU OE2 HE2 sing N N 73 GLU OXT HXT sing N N 74 GLY N CA sing N N 75 GLY N H sing N N 76 GLY N H2 sing N N 77 GLY CA C sing N N 78 GLY CA HA2 sing N N 79 GLY CA HA3 sing N N 80 GLY C O doub N N 81 GLY C OXT sing N N 82 GLY OXT HXT sing N N 83 ILE N CA sing N N 84 ILE N H sing N N 85 ILE N H2 sing N N 86 ILE CA C sing N N 87 ILE CA CB sing N N 88 ILE CA HA sing N N 89 ILE C O doub N N 90 ILE C OXT sing N N 91 ILE CB CG1 sing N N 92 ILE CB CG2 sing N N 93 ILE CB HB sing N N 94 ILE CG1 CD1 sing N N 95 ILE CG1 HG12 sing N N 96 ILE CG1 HG13 sing N N 97 ILE CG2 HG21 sing N N 98 ILE CG2 HG22 sing N N 99 ILE CG2 HG23 sing N N 100 ILE CD1 HD11 sing N N 101 ILE CD1 HD12 sing N N 102 ILE CD1 HD13 sing N N 103 ILE OXT HXT sing N N 104 LEU N CA sing N N 105 LEU N H sing N N 106 LEU N H2 sing N N 107 LEU CA C sing N N 108 LEU CA CB sing N N 109 LEU CA HA sing N N 110 LEU C O doub N N 111 LEU C OXT sing N N 112 LEU CB CG sing N N 113 LEU CB HB2 sing N N 114 LEU CB HB3 sing N N 115 LEU CG CD1 sing N N 116 LEU CG CD2 sing N N 117 LEU CG HG sing N N 118 LEU CD1 HD11 sing N N 119 LEU CD1 HD12 sing N N 120 LEU CD1 HD13 sing N N 121 LEU CD2 HD21 sing N N 122 LEU CD2 HD22 sing N N 123 LEU CD2 HD23 sing N N 124 LEU OXT HXT sing N N 125 LHG O1 C1 sing N N 126 LHG O1 HO1 sing N N 127 LHG C1 C2 sing N N 128 LHG C1 HC11 sing N N 129 LHG C1 HC12 sing N N 130 LHG C2 O2 sing N N 131 LHG C2 C3 sing N N 132 LHG C2 HC2 sing N N 133 LHG O2 H02 sing N N 134 LHG C3 O3 sing N N 135 LHG C3 HC31 sing N N 136 LHG C3 HC32 sing N N 137 LHG O3 P sing N N 138 LHG P O4 sing N N 139 LHG P O5 doub N N 140 LHG P O6 sing N N 141 LHG O4 HO4 sing N N 142 LHG O6 C4 sing N N 143 LHG C4 C5 sing N N 144 LHG C4 HC41 sing N N 145 LHG C4 HC42 sing N N 146 LHG C5 C6 sing N N 147 LHG C5 O7 sing N N 148 LHG C5 HC5 sing N N 149 LHG C6 O8 sing N N 150 LHG C6 HC61 sing N N 151 LHG C6 HC62 sing N N 152 LHG O7 C7 sing N N 153 LHG C7 O9 doub N N 154 LHG C7 C8 sing N N 155 LHG C8 C9 sing N N 156 LHG C8 HC81 sing N N 157 LHG C8 HC82 sing N N 158 LHG C9 C10 sing N N 159 LHG C9 HC91 sing N N 160 LHG C9 HC92 sing N N 161 LHG C10 C11 sing N N 162 LHG C10 H101 sing N N 163 LHG C10 H102 sing N N 164 LHG O8 C23 sing N N 165 LHG C23 O10 doub N N 166 LHG C23 C24 sing N N 167 LHG C24 C25 sing N N 168 LHG C24 H241 sing N N 169 LHG C24 H242 sing N N 170 LHG C11 C12 sing N N 171 LHG C11 H111 sing N N 172 LHG C11 H112 sing N N 173 LHG C12 C13 sing N N 174 LHG C12 H121 sing N N 175 LHG C12 H122 sing N N 176 LHG C13 C14 sing N N 177 LHG C13 H131 sing N N 178 LHG C13 H132 sing N N 179 LHG C14 C15 sing N N 180 LHG C14 H141 sing N N 181 LHG C14 H142 sing N N 182 LHG C15 C16 sing N N 183 LHG C15 H151 sing N N 184 LHG C15 H152 sing N N 185 LHG C16 C17 sing N N 186 LHG C16 H161 sing N N 187 LHG C16 H162 sing N N 188 LHG C17 C18 sing N N 189 LHG C17 H171 sing N N 190 LHG C17 H172 sing N N 191 LHG C18 C19 sing N N 192 LHG C18 H181 sing N N 193 LHG C18 H182 sing N N 194 LHG C19 C20 sing N N 195 LHG C19 H191 sing N N 196 LHG C19 H192 sing N N 197 LHG C20 C21 sing N N 198 LHG C20 H201 sing N N 199 LHG C20 H202 sing N N 200 LHG C21 C22 sing N N 201 LHG C21 H211 sing N N 202 LHG C21 H212 sing N N 203 LHG C22 H221 sing N N 204 LHG C22 H222 sing N N 205 LHG C22 H223 sing N N 206 LHG C25 C26 sing N N 207 LHG C25 H251 sing N N 208 LHG C25 H252 sing N N 209 LHG C26 C27 sing N N 210 LHG C26 H261 sing N N 211 LHG C26 H262 sing N N 212 LHG C27 C28 sing N N 213 LHG C27 H271 sing N N 214 LHG C27 H272 sing N N 215 LHG C28 C29 sing N N 216 LHG C28 H281 sing N N 217 LHG C28 H282 sing N N 218 LHG C29 C30 sing N N 219 LHG C29 H291 sing N N 220 LHG C29 H292 sing N N 221 LHG C30 C31 sing N N 222 LHG C30 H301 sing N N 223 LHG C30 H302 sing N N 224 LHG C31 C32 sing N N 225 LHG C31 H311 sing N N 226 LHG C31 H312 sing N N 227 LHG C32 C33 sing N N 228 LHG C32 H321 sing N N 229 LHG C32 H322 sing N N 230 LHG C33 C34 sing N N 231 LHG C33 H331 sing N N 232 LHG C33 H332 sing N N 233 LHG C34 C35 sing N N 234 LHG C34 H341 sing N N 235 LHG C34 H342 sing N N 236 LHG C35 C36 sing N N 237 LHG C35 H351 sing N N 238 LHG C35 H352 sing N N 239 LHG C36 C37 sing N N 240 LHG C36 H361 sing N N 241 LHG C36 H362 sing N N 242 LHG C37 C38 sing N N 243 LHG C37 H371 sing N N 244 LHG C37 H372 sing N N 245 LHG C38 H381 sing N N 246 LHG C38 H382 sing N N 247 LHG C38 H383 sing N N 248 LYS N CA sing N N 249 LYS N H sing N N 250 LYS N H2 sing N N 251 LYS CA C sing N N 252 LYS CA CB sing N N 253 LYS CA HA sing N N 254 LYS C O doub N N 255 LYS C OXT sing N N 256 LYS CB CG sing N N 257 LYS CB HB2 sing N N 258 LYS CB HB3 sing N N 259 LYS CG CD sing N N 260 LYS CG HG2 sing N N 261 LYS CG HG3 sing N N 262 LYS CD CE sing N N 263 LYS CD HD2 sing N N 264 LYS CD HD3 sing N N 265 LYS CE NZ sing N N 266 LYS CE HE2 sing N N 267 LYS CE HE3 sing N N 268 LYS NZ HZ1 sing N N 269 LYS NZ HZ2 sing N N 270 LYS NZ HZ3 sing N N 271 LYS OXT HXT sing N N 272 MET N CA sing N N 273 MET N H sing N N 274 MET N H2 sing N N 275 MET CA C sing N N 276 MET CA CB sing N N 277 MET CA HA sing N N 278 MET C O doub N N 279 MET C OXT sing N N 280 MET CB CG sing N N 281 MET CB HB2 sing N N 282 MET CB HB3 sing N N 283 MET CG SD sing N N 284 MET CG HG2 sing N N 285 MET CG HG3 sing N N 286 MET SD CE sing N N 287 MET CE HE1 sing N N 288 MET CE HE2 sing N N 289 MET CE HE3 sing N N 290 MET OXT HXT sing N N 291 PHE N CA sing N N 292 PHE N H sing N N 293 PHE N H2 sing N N 294 PHE CA C sing N N 295 PHE CA CB sing N N 296 PHE CA HA sing N N 297 PHE C O doub N N 298 PHE C OXT sing N N 299 PHE CB CG sing N N 300 PHE CB HB2 sing N N 301 PHE CB HB3 sing N N 302 PHE CG CD1 doub Y N 303 PHE CG CD2 sing Y N 304 PHE CD1 CE1 sing Y N 305 PHE CD1 HD1 sing N N 306 PHE CD2 CE2 doub Y N 307 PHE CD2 HD2 sing N N 308 PHE CE1 CZ doub Y N 309 PHE CE1 HE1 sing N N 310 PHE CE2 CZ sing Y N 311 PHE CE2 HE2 sing N N 312 PHE CZ HZ sing N N 313 PHE OXT HXT sing N N 314 PRO N CA sing N N 315 PRO N CD sing N N 316 PRO N H sing N N 317 PRO CA C sing N N 318 PRO CA CB sing N N 319 PRO CA HA sing N N 320 PRO C O doub N N 321 PRO C OXT sing N N 322 PRO CB CG sing N N 323 PRO CB HB2 sing N N 324 PRO CB HB3 sing N N 325 PRO CG CD sing N N 326 PRO CG HG2 sing N N 327 PRO CG HG3 sing N N 328 PRO CD HD2 sing N N 329 PRO CD HD3 sing N N 330 PRO OXT HXT sing N N 331 SER N CA sing N N 332 SER N H sing N N 333 SER N H2 sing N N 334 SER CA C sing N N 335 SER CA CB sing N N 336 SER CA HA sing N N 337 SER C O doub N N 338 SER C OXT sing N N 339 SER CB OG sing N N 340 SER CB HB2 sing N N 341 SER CB HB3 sing N N 342 SER OG HG sing N N 343 SER OXT HXT sing N N 344 THR N CA sing N N 345 THR N H sing N N 346 THR N H2 sing N N 347 THR CA C sing N N 348 THR CA CB sing N N 349 THR CA HA sing N N 350 THR C O doub N N 351 THR C OXT sing N N 352 THR CB OG1 sing N N 353 THR CB CG2 sing N N 354 THR CB HB sing N N 355 THR OG1 HG1 sing N N 356 THR CG2 HG21 sing N N 357 THR CG2 HG22 sing N N 358 THR CG2 HG23 sing N N 359 THR OXT HXT sing N N 360 TRP N CA sing N N 361 TRP N H sing N N 362 TRP N H2 sing N N 363 TRP CA C sing N N 364 TRP CA CB sing N N 365 TRP CA HA sing N N 366 TRP C O doub N N 367 TRP C OXT sing N N 368 TRP CB CG sing N N 369 TRP CB HB2 sing N N 370 TRP CB HB3 sing N N 371 TRP CG CD1 doub Y N 372 TRP CG CD2 sing Y N 373 TRP CD1 NE1 sing Y N 374 TRP CD1 HD1 sing N N 375 TRP CD2 CE2 doub Y N 376 TRP CD2 CE3 sing Y N 377 TRP NE1 CE2 sing Y N 378 TRP NE1 HE1 sing N N 379 TRP CE2 CZ2 sing Y N 380 TRP CE3 CZ3 doub Y N 381 TRP CE3 HE3 sing N N 382 TRP CZ2 CH2 doub Y N 383 TRP CZ2 HZ2 sing N N 384 TRP CZ3 CH2 sing Y N 385 TRP CZ3 HZ3 sing N N 386 TRP CH2 HH2 sing N N 387 TRP OXT HXT sing N N 388 TYR N CA sing N N 389 TYR N H sing N N 390 TYR N H2 sing N N 391 TYR CA C sing N N 392 TYR CA CB sing N N 393 TYR CA HA sing N N 394 TYR C O doub N N 395 TYR C OXT sing N N 396 TYR CB CG sing N N 397 TYR CB HB2 sing N N 398 TYR CB HB3 sing N N 399 TYR CG CD1 doub Y N 400 TYR CG CD2 sing Y N 401 TYR CD1 CE1 sing Y N 402 TYR CD1 HD1 sing N N 403 TYR CD2 CE2 doub Y N 404 TYR CD2 HD2 sing N N 405 TYR CE1 CZ doub Y N 406 TYR CE1 HE1 sing N N 407 TYR CE2 CZ sing Y N 408 TYR CE2 HE2 sing N N 409 TYR CZ OH sing N N 410 TYR OH HH sing N N 411 TYR OXT HXT sing N N 412 VAL N CA sing N N 413 VAL N H sing N N 414 VAL N H2 sing N N 415 VAL CA C sing N N 416 VAL CA CB sing N N 417 VAL CA HA sing N N 418 VAL C O doub N N 419 VAL C OXT sing N N 420 VAL CB CG1 sing N N 421 VAL CB CG2 sing N N 422 VAL CB HB sing N N 423 VAL CG1 HG11 sing N N 424 VAL CG1 HG12 sing N N 425 VAL CG1 HG13 sing N N 426 VAL CG2 HG21 sing N N 427 VAL CG2 HG22 sing N N 428 VAL CG2 HG23 sing N N 429 VAL OXT HXT sing N N 430 # _em_admin.current_status REL _em_admin.deposition_date 2025-07-02 _em_admin.deposition_site PDBJ _em_admin.entry_id 9VP2 _em_admin.last_update 2025-12-24 _em_admin.map_release_date 2025-12-24 _em_admin.title 'CryoEM structure of cyclised H-pilus (D69A)' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 7.1 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 90370 _em_entity_assembly_naturalsource.organism 'Salmonella enterica subsp. enterica serovar Typhi' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C5 _em_helical_entity.angular_rotation_per_subunit 29.00 _em_helical_entity.axial_rise_per_subunit 12.24 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 48.0 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF ChimeraX' ? ? 'MODEL FITTING' ? 8 ? 1 ? Coot ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? 'MODEL REFINEMENT' ? 14 ? 1 ? PHENIX 1.20.1_4487 ? 'VOLUME SELECTION' ? 15 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 16 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 17 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 18 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 19 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 20 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9VP2 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ #