HEADER METAL BINDING PROTEIN 16-JUL-25 9VWB TITLE HAMA, A HEME-OXYGENASE-LIKE ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUF3050 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MANGOTOXIN BIOSYNTHESIS-INVOLVED PROTEIN MGOB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA H111; SOURCE 3 ORGANISM_TAXID: 1055524; SOURCE 4 GENE: A8E72_20635, B9Z07_11505, EGT41_25585, LGN22_04230; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS 2-OXOGLUTARATE-DEPENDENT HYDROXYLASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.B.SU,T.T.ZHANG,Y.YU,H.P.LIU REVDAT 1 12-NOV-25 9VWB 0 JRNL AUTH B.SU,T.ZHANG,Y.YU,H.LIU JRNL TITL STRUCTURAL BASIS OF A 2-OXOGLUTARATE-DEPENDENT JRNL TITL 2 HEME-OXYGENASE-LIKE ENZYME HAMA IN FRAGIN BIOSYNTHESIS. JRNL REF RSC ADV V. 15 38502 2025 JRNL REFN ESSN 2046-2069 JRNL PMID 41103923 JRNL DOI 10.1039/D5RA05203C REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 16110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1133 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1957 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2018 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1838 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2734 ; 1.425 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4265 ; 0.485 ; 1.550 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 5.369 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 21 ;16.846 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;15.093 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2347 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 417 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 991 ; 1.808 ; 1.954 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 992 ; 1.807 ; 1.953 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1235 ; 2.781 ; 2.912 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1236 ; 2.780 ; 2.915 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1027 ; 2.691 ; 2.288 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1026 ; 2.692 ; 2.290 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1498 ; 4.325 ; 3.299 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2425 ; 5.680 ;31.913 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2392 ; 5.650 ;31.690 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9VWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 18-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1300061500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-ARC 150 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16978 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.24400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 1.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH 5.0 REMARK 280 2.85 M SODIUM FORMATE 5% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.77550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.77550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.77550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.77550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.77550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.77550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.77550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.77550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 436 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 482 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 201 REMARK 465 VAL A 202 REMARK 465 ASP A 203 REMARK 465 SER A 204 REMARK 465 GLY A 205 REMARK 465 GLU A 206 REMARK 465 HIS A 207 REMARK 465 ASN A 256 REMARK 465 VAL A 257 REMARK 465 VAL A 258 REMARK 465 PRO A 259 REMARK 465 ALA A 260 REMARK 465 LEU A 261 REMARK 465 GLU A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 505 O HOH A 529 2.05 REMARK 500 O HOH A 420 O HOH A 481 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 240 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 61 62.48 -115.73 REMARK 500 SER A 86 57.75 -156.16 REMARK 500 ARG A 167 -70.99 -131.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 9 0.09 SIDE CHAIN REMARK 500 ARG A 17 0.15 SIDE CHAIN REMARK 500 ARG A 28 0.15 SIDE CHAIN REMARK 500 ARG A 105 0.09 SIDE CHAIN REMARK 500 ARG A 167 0.10 SIDE CHAIN REMARK 500 ARG A 176 0.28 SIDE CHAIN REMARK 500 ARG A 212 0.13 SIDE CHAIN REMARK 500 ARG A 255 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 OE1 REMARK 620 2 GLU A 84 OE2 60.9 REMARK 620 3 HIS A 96 ND1 89.9 87.8 REMARK 620 4 HIS A 199 NE2 109.7 170.6 93.2 REMARK 620 5 ACY A 302 O 146.0 94.3 113.5 93.9 REMARK 620 6 ACY A 302 OXT 94.5 89.3 172.7 90.8 60.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 156 OG1 REMARK 620 2 HOH A 494 O 90.5 REMARK 620 3 HOH A 500 O 82.9 90.5 REMARK 620 4 HOH A 514 O 87.8 170.5 98.5 REMARK 620 N 1 2 3 DBREF1 9VWB A 1 260 UNP A0A144VC93_9BURK DBREF2 9VWB A A0A144VC93 1 260 SEQADV 9VWB LEU A 261 UNP A0A144VC9 EXPRESSION TAG SEQADV 9VWB GLU A 262 UNP A0A144VC9 EXPRESSION TAG SEQADV 9VWB HIS A 263 UNP A0A144VC9 EXPRESSION TAG SEQADV 9VWB HIS A 264 UNP A0A144VC9 EXPRESSION TAG SEQADV 9VWB HIS A 265 UNP A0A144VC9 EXPRESSION TAG SEQADV 9VWB HIS A 266 UNP A0A144VC9 EXPRESSION TAG SEQADV 9VWB HIS A 267 UNP A0A144VC9 EXPRESSION TAG SEQADV 9VWB HIS A 268 UNP A0A144VC9 EXPRESSION TAG SEQRES 1 A 268 MET ASN GLN LEU GLU GLY LEU GLU ARG LYS ILE GLY GLU SEQRES 2 A 268 GLN HIS GLU ARG LEU ALA HIS HIS PRO VAL PHE GLY SER SEQRES 3 A 268 ILE ARG THR ILE ASP GLU LEU ARG VAL PHE MET GLU TRP SEQRES 4 A 268 HIS VAL PHE ALA VAL TRP ASP PHE MET SER LEU VAL LYS SEQRES 5 A 268 ARG LEU GLN GLN ASP LEU THR THR VAL ALA VAL PRO TRP SEQRES 6 A 268 VAL ALA PRO ARG ASN ALA ASN ALA SER ARG LEU ILE ASN SEQRES 7 A 268 GLU ILE VAL LEU GLY GLU GLU SER ASP GLU THR PRO ASN SEQRES 8 A 268 GLY HIS MET SER HIS TYR ASP LEU TYR LEU HIS ALA MET SEQRES 9 A 268 ARG ASP VAL GLY ALA SER THR SER ARG ILE GLU GLU MET SEQRES 10 A 268 VAL SER LEU VAL ARG SER GLY PHE SER VAL SER ALA ALA SEQRES 11 A 268 LEU LYS ALA VAL ASP ALA PRO GLU PRO VAL ILE ARG PHE SEQRES 12 A 268 VAL GLU ALA THR MET ALA ALA CYS THR SER GLY ALA THR SEQRES 13 A 268 HIS GLN VAL LEU GLY ASN PHE PHE TYR GLY ARG GLU ASN SEQRES 14 A 268 VAL ILE PRO ASP MET PHE ARG THR LEU LEU ASP GLU TRP SEQRES 15 A 268 LYS ILE GLU ARG SER SER ILE PRO LEU LEU VAL TYR TYR SEQRES 16 A 268 LEU ASP ARG HIS ILE GLU VAL ASP SER GLY GLU HIS GLY SEQRES 17 A 268 PRO ALA ALA ARG ALA MET ILE ARG GLU ALA ALA ASP GLY SEQRES 18 A 268 ASP ALA ALA LYS LEU GLU GLU ALA LEU GLN ALA GLY LEU SEQRES 19 A 268 ASP ALA ILE ASP GLU ARG MET ARG LEU TRP ASP GLY LEU SEQRES 20 A 268 LEU ALA HIS LEU GLY GLN THR ARG ASN VAL VAL PRO ALA SEQRES 21 A 268 LEU GLU HIS HIS HIS HIS HIS HIS HET FE A 301 1 HET ACY A 302 4 HET FMT A 303 3 HET NA A 304 1 HETNAM FE FE (III) ION HETNAM ACY ACETIC ACID HETNAM FMT FORMIC ACID HETNAM NA SODIUM ION FORMUL 2 FE FE 3+ FORMUL 3 ACY C2 H4 O2 FORMUL 4 FMT C H2 O2 FORMUL 5 NA NA 1+ FORMUL 6 HOH *144(H2 O) HELIX 1 AA1 ASN A 2 HIS A 20 1 19 HELIX 2 AA2 VAL A 23 ILE A 27 5 5 HELIX 3 AA3 THR A 29 THR A 59 1 31 HELIX 4 AA4 ASN A 70 SER A 86 1 17 HELIX 5 AA5 SER A 95 GLY A 108 1 14 HELIX 6 AA6 THR A 111 SER A 123 1 13 HELIX 7 AA7 SER A 126 VAL A 134 1 9 HELIX 8 AA8 PRO A 137 GLY A 154 1 18 HELIX 9 AA9 ALA A 155 ARG A 167 1 13 HELIX 10 AB1 VAL A 170 LYS A 183 1 14 HELIX 11 AB2 ILE A 184 ARG A 186 5 3 HELIX 12 AB3 ILE A 189 HIS A 199 1 11 HELIX 13 AB4 PRO A 209 ASP A 220 1 12 HELIX 14 AB5 ASP A 222 THR A 254 1 33 SHEET 1 AA1 2 ASP A 87 THR A 89 0 SHEET 2 AA1 2 GLY A 92 MET A 94 -1 O GLY A 92 N THR A 89 LINK OE1 GLU A 84 FE FE A 301 1555 1555 2.13 LINK OE2 GLU A 84 FE FE A 301 1555 1555 2.23 LINK ND1 HIS A 96 FE FE A 301 1555 1555 2.11 LINK OG1 THR A 156 NA NA A 304 1555 1555 2.39 LINK NE2 HIS A 199 FE FE A 301 1555 1555 2.14 LINK FE FE A 301 O ACY A 302 1555 1555 2.15 LINK FE FE A 301 OXT ACY A 302 1555 1555 2.20 LINK NA NA A 304 O HOH A 494 1555 1555 2.13 LINK NA NA A 304 O HOH A 500 1555 1555 2.68 LINK NA NA A 304 O HOH A 514 1555 1555 2.14 CISPEP 1 VAL A 63 PRO A 64 0 -2.83 CRYST1 101.551 101.551 46.893 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009847 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021325 0.00000 TER 1969 ARG A 255 HETATM 1970 FE FE A 301 9.401 23.596 9.406 1.00 15.14 FE HETATM 1971 C ACY A 302 7.004 23.729 10.024 1.00 15.29 C HETATM 1972 O ACY A 302 7.841 23.357 10.867 1.00 16.20 O HETATM 1973 OXT ACY A 302 7.317 24.057 8.873 1.00 15.48 O HETATM 1974 CH3 ACY A 302 5.504 23.831 10.416 1.00 16.25 C HETATM 1975 C FMT A 303 2.312 25.215 11.267 1.00 11.70 C HETATM 1976 O1 FMT A 303 1.582 24.989 10.330 1.00 12.14 O HETATM 1977 O2 FMT A 303 2.280 26.373 11.964 1.00 12.10 O HETATM 1978 NA NA A 304 -3.899 12.537 -7.410 1.00 30.73 NA HETATM 1979 O HOH A 401 4.008 9.265 -7.075 1.00 21.85 O HETATM 1980 O HOH A 402 12.305 14.103 -10.460 1.00 12.10 O HETATM 1981 O HOH A 403 16.536 28.214 28.084 1.00 32.11 O HETATM 1982 O HOH A 404 -1.354 40.071 16.523 1.00 29.31 O HETATM 1983 O HOH A 405 21.269 26.439 11.383 1.00 36.36 O HETATM 1984 O HOH A 406 -13.243 26.031 6.425 1.00 37.70 O HETATM 1985 O HOH A 407 12.522 41.590 13.557 1.00 22.94 O HETATM 1986 O HOH A 408 13.870 13.935 14.497 1.00 25.83 O HETATM 1987 O HOH A 409 8.903 39.697 27.145 1.00 41.80 O HETATM 1988 O HOH A 410 -11.083 28.057 23.035 1.00 15.60 O HETATM 1989 O HOH A 411 -0.204 9.420 -5.786 1.00 29.94 O HETATM 1990 O HOH A 412 8.461 24.094 4.053 1.00 29.79 O HETATM 1991 O HOH A 413 6.659 1.149 -9.874 1.00 23.14 O HETATM 1992 O HOH A 414 5.558 10.357 21.172 1.00 17.28 O HETATM 1993 O HOH A 415 4.576 41.365 16.263 1.00 29.01 O HETATM 1994 O HOH A 416 12.917 27.711 23.331 1.00 24.45 O HETATM 1995 O HOH A 417 -13.772 31.241 14.726 1.00 18.84 O HETATM 1996 O HOH A 418 -11.925 16.085 -4.460 1.00 33.66 O HETATM 1997 O HOH A 419 9.081 12.721 21.222 1.00 33.19 O HETATM 1998 O HOH A 420 4.939 17.647 30.841 1.00 38.50 O HETATM 1999 O HOH A 421 -10.182 34.870 -13.086 1.00 42.91 O HETATM 2000 O HOH A 422 -4.361 26.037 29.332 1.00 20.61 O HETATM 2001 O HOH A 423 -12.026 23.258 5.921 1.00 16.78 O HETATM 2002 O HOH A 424 11.456 13.531 -12.966 1.00 21.44 O HETATM 2003 O HOH A 425 -10.131 19.583 5.177 1.00 15.69 O HETATM 2004 O HOH A 426 18.477 31.390 19.140 1.00 18.93 O HETATM 2005 O HOH A 427 -10.090 33.060 6.703 1.00 28.69 O HETATM 2006 O HOH A 428 -10.668 31.624 4.431 1.00 25.53 O HETATM 2007 O HOH A 429 12.791 24.593 -0.793 1.00 41.25 O HETATM 2008 O HOH A 430 18.351 20.901 5.980 1.00 22.24 O HETATM 2009 O HOH A 431 16.075 21.276 1.712 1.00 24.21 O HETATM 2010 O HOH A 432 7.179 28.840 3.668 1.00 33.89 O HETATM 2011 O HOH A 433 -3.420 23.171 6.408 1.00 12.31 O HETATM 2012 O HOH A 434 -10.122 13.972 9.342 1.00 17.71 O HETATM 2013 O HOH A 435 6.821 12.453 19.710 1.00 17.12 O HETATM 2014 O HOH A 436 12.600 12.603 0.000 0.50 18.31 O HETATM 2015 O HOH A 437 -4.291 10.701 28.635 1.00 41.59 O HETATM 2016 O HOH A 438 1.848 14.425 10.611 1.00 7.08 O HETATM 2017 O HOH A 439 3.190 11.730 27.074 1.00 31.13 O HETATM 2018 O HOH A 440 14.365 22.781 -14.292 1.00 19.02 O HETATM 2019 O HOH A 441 -11.361 7.194 14.674 1.00 34.30 O HETATM 2020 O HOH A 442 -12.261 19.274 10.995 1.00 12.81 O HETATM 2021 O HOH A 443 -5.598 16.440 -8.629 1.00 18.18 O HETATM 2022 O HOH A 444 -11.817 22.427 -2.699 1.00 15.14 O HETATM 2023 O HOH A 445 -11.029 27.214 27.133 1.00 39.44 O HETATM 2024 O HOH A 446 15.359 21.663 25.051 1.00 32.50 O HETATM 2025 O HOH A 447 15.957 36.813 15.198 1.00 33.49 O HETATM 2026 O HOH A 448 1.889 18.879 24.688 1.00 26.70 O HETATM 2027 O HOH A 449 4.651 39.224 9.440 1.00 31.93 O HETATM 2028 O HOH A 450 -0.197 19.989 23.810 1.00 17.34 O HETATM 2029 O HOH A 451 6.278 8.267 19.481 1.00 24.13 O HETATM 2030 O HOH A 452 -6.147 22.353 9.057 1.00 12.29 O HETATM 2031 O HOH A 453 20.801 20.978 -3.467 1.00 35.44 O HETATM 2032 O HOH A 454 -1.046 9.586 -2.239 1.00 20.12 O HETATM 2033 O HOH A 455 -8.428 22.609 2.504 1.00 12.14 O HETATM 2034 O HOH A 456 -11.939 34.037 19.576 1.00 16.91 O HETATM 2035 O HOH A 457 20.526 35.751 23.406 1.00 29.44 O HETATM 2036 O HOH A 458 -13.639 19.821 17.728 1.00 31.85 O HETATM 2037 O HOH A 459 -13.950 27.964 4.109 1.00 33.76 O HETATM 2038 O HOH A 460 -1.843 32.518 1.741 1.00 46.50 O HETATM 2039 O HOH A 461 -9.638 24.766 12.612 1.00 13.65 O HETATM 2040 O HOH A 462 6.401 15.044 -18.319 1.00 29.43 O HETATM 2041 O HOH A 463 10.952 41.395 20.873 1.00 19.43 O HETATM 2042 O HOH A 464 16.916 37.882 26.002 1.00 20.12 O HETATM 2043 O HOH A 465 -5.140 24.784 7.729 1.00 13.11 O HETATM 2044 O HOH A 466 -2.868 26.430 8.279 1.00 9.42 O HETATM 2045 O HOH A 467 -7.145 38.815 11.865 1.00 24.18 O HETATM 2046 O HOH A 468 -3.660 9.744 1.485 1.00 24.38 O HETATM 2047 O HOH A 469 -11.815 22.251 0.056 1.00 22.44 O HETATM 2048 O HOH A 470 2.146 22.793 -15.015 1.00 32.87 O HETATM 2049 O HOH A 471 -11.745 22.252 24.134 1.00 29.80 O HETATM 2050 O HOH A 472 17.190 29.803 12.690 1.00 22.32 O HETATM 2051 O HOH A 473 17.430 21.056 19.363 1.00 25.88 O HETATM 2052 O HOH A 474 -13.503 21.376 9.252 1.00 21.78 O HETATM 2053 O HOH A 475 10.490 11.277 -2.617 1.00 11.83 O HETATM 2054 O HOH A 476 7.019 20.103 10.792 1.00 9.94 O HETATM 2055 O HOH A 477 7.125 25.401 6.446 1.00 18.57 O HETATM 2056 O HOH A 478 0.851 18.449 27.793 1.00 30.34 O HETATM 2057 O HOH A 479 -12.339 28.157 17.372 1.00 13.84 O HETATM 2058 O HOH A 480 12.328 6.437 -15.159 1.00 13.77 O HETATM 2059 O HOH A 481 6.372 17.712 29.197 1.00 34.78 O HETATM 2060 O HOH A 482 14.541 14.541 0.000 0.50 16.10 O HETATM 2061 O HOH A 483 0.421 21.998 -16.439 1.00 30.41 O HETATM 2062 O HOH A 484 10.523 11.769 17.450 1.00 17.82 O HETATM 2063 O HOH A 485 -13.733 22.513 3.671 1.00 34.40 O HETATM 2064 O HOH A 486 5.332 -0.359 -7.652 1.00 38.92 O HETATM 2065 O HOH A 487 -10.920 15.984 1.833 1.00 33.01 O HETATM 2066 O HOH A 488 6.119 15.045 -10.480 1.00 27.66 O HETATM 2067 O HOH A 489 12.019 23.179 -8.391 1.00 23.65 O HETATM 2068 O HOH A 490 6.522 36.086 31.631 1.00 28.44 O HETATM 2069 O HOH A 491 4.814 7.487 -5.500 1.00 26.33 O HETATM 2070 O HOH A 492 14.664 23.569 6.876 1.00 20.07 O HETATM 2071 O HOH A 493 9.647 11.978 -16.382 1.00 27.99 O HETATM 2072 O HOH A 494 -5.759 13.059 -6.524 1.00 18.70 O HETATM 2073 O HOH A 495 4.021 3.962 20.207 1.00 36.20 O HETATM 2074 O HOH A 496 8.741 18.064 11.122 1.00 9.35 O HETATM 2075 O HOH A 497 -4.942 23.970 26.411 1.00 24.44 O HETATM 2076 O HOH A 498 -10.467 25.308 15.146 1.00 12.65 O HETATM 2077 O HOH A 499 -8.504 10.173 12.156 1.00 20.39 O HETATM 2078 O HOH A 500 -3.267 11.052 -5.269 1.00 32.46 O HETATM 2079 O HOH A 501 -17.943 26.029 9.937 1.00 36.46 O HETATM 2080 O HOH A 502 -13.839 18.057 12.619 1.00 19.88 O HETATM 2081 O HOH A 503 -7.016 22.221 6.455 1.00 18.60 O HETATM 2082 O HOH A 504 9.938 41.474 10.855 1.00 34.69 O HETATM 2083 O HOH A 505 -5.575 8.417 11.158 1.00 29.59 O HETATM 2084 O HOH A 506 7.779 11.258 17.403 1.00 17.81 O HETATM 2085 O HOH A 507 -9.302 11.799 7.590 1.00 27.65 O HETATM 2086 O HOH A 508 -15.337 27.225 -4.783 1.00 31.61 O HETATM 2087 O HOH A 509 -8.586 4.212 16.138 1.00 22.97 O HETATM 2088 O HOH A 510 4.663 11.526 -11.410 1.00 21.79 O HETATM 2089 O HOH A 511 6.563 -0.270 -3.555 1.00 22.94 O HETATM 2090 O HOH A 512 -11.254 24.967 -18.208 1.00 28.98 O HETATM 2091 O HOH A 513 7.473 39.476 25.237 1.00 41.07 O HETATM 2092 O HOH A 514 -2.086 12.287 -8.515 1.00 33.20 O HETATM 2093 O HOH A 515 15.763 14.850 18.581 1.00 32.67 O HETATM 2094 O HOH A 516 -0.684 5.514 11.858 1.00 30.94 O HETATM 2095 O HOH A 517 18.520 22.256 17.740 1.00 30.26 O HETATM 2096 O HOH A 518 -18.141 30.188 12.899 1.00 42.35 O HETATM 2097 O HOH A 519 3.607 9.544 -21.307 1.00 35.34 O HETATM 2098 O HOH A 520 -7.092 40.514 22.127 1.00 32.42 O HETATM 2099 O HOH A 521 -7.530 11.495 -4.412 1.00 32.94 O HETATM 2100 O HOH A 522 -16.014 21.224 10.863 1.00 33.80 O HETATM 2101 O HOH A 523 1.401 11.626 -18.030 1.00 33.68 O HETATM 2102 O HOH A 524 -12.594 17.727 8.840 1.00 19.96 O HETATM 2103 O HOH A 525 -14.000 23.829 17.772 1.00 23.97 O HETATM 2104 O HOH A 526 -14.626 24.771 -5.427 1.00 23.73 O HETATM 2105 O HOH A 527 18.449 32.365 16.605 1.00 27.36 O HETATM 2106 O HOH A 528 -12.748 14.818 9.237 1.00 30.13 O HETATM 2107 O HOH A 529 -6.641 9.875 10.189 1.00 32.32 O HETATM 2108 O HOH A 530 7.805 28.120 5.795 1.00 30.19 O HETATM 2109 O HOH A 531 -9.616 22.455 5.038 1.00 5.33 O HETATM 2110 O HOH A 532 -10.717 18.718 2.563 1.00 18.87 O HETATM 2111 O HOH A 533 20.594 32.233 20.547 1.00 27.70 O HETATM 2112 O HOH A 534 -13.475 30.716 3.543 1.00 36.31 O HETATM 2113 O HOH A 535 21.010 33.192 23.101 1.00 29.94 O HETATM 2114 O HOH A 536 -10.521 25.208 24.295 1.00 24.39 O HETATM 2115 O HOH A 537 7.701 27.732 -3.487 1.00 33.83 O HETATM 2116 O HOH A 538 -12.882 25.871 16.221 1.00 16.15 O HETATM 2117 O HOH A 539 11.021 25.791 -10.605 1.00 21.37 O HETATM 2118 O HOH A 540 8.878 25.310 -11.061 1.00 30.54 O HETATM 2119 O HOH A 541 -12.456 19.184 6.363 1.00 18.82 O HETATM 2120 O HOH A 542 -14.361 22.867 -3.261 1.00 26.16 O HETATM 2121 O HOH A 543 -9.567 20.850 0.764 1.00 27.07 O HETATM 2122 O HOH A 544 10.121 27.619 -3.207 1.00 36.47 O CONECT 681 1970 CONECT 682 1970 CONECT 771 1970 CONECT 1215 1978 CONECT 1593 1970 CONECT 1970 681 682 771 1593 CONECT 1970 1972 1973 CONECT 1971 1972 1973 1974 CONECT 1972 1970 1971 CONECT 1973 1970 1971 CONECT 1974 1971 CONECT 1975 1976 1977 CONECT 1976 1975 CONECT 1977 1975 CONECT 1978 1215 2072 2078 2092 CONECT 2072 1978 CONECT 2078 1978 CONECT 2092 1978 MASTER 399 0 4 14 2 0 0 6 2110 1 18 21 END