HEADER METAL BINDING PROTEIN 20-JUL-25 9VY8 TITLE STRUCTURE OF MIF BINDING WITH SAMARIUM IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROPEPTIDE, PEPSY AMD PEPTIDASE M4; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACILLUS FLAGELLATUS KT; SOURCE 3 ORGANISM_TAXID: 265072; SOURCE 4 ATCC: 51484; SOURCE 5 GENE: MFLA_0908, MFLA_1052; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS RARE EARTH, METALLOPROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.X.DU,Z.Q.LI,L.LIU REVDAT 1 22-JUL-26 9VY8 0 JRNL AUTH Y.X.DU,Z.Q.LI,L.LIU JRNL TITL ADJACENT RARE EARTH SEPARATION BY A PROTEIN ATOMIC RULER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 15489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6500 - 3.6900 1.00 3091 160 0.1789 0.1830 REMARK 3 2 3.6900 - 2.9300 1.00 2951 156 0.2225 0.2212 REMARK 3 3 2.9300 - 2.5600 1.00 2922 137 0.2569 0.2986 REMARK 3 4 2.5600 - 2.3300 0.99 2883 163 0.3226 0.3107 REMARK 3 5 2.3300 - 2.1600 0.99 2896 130 0.3742 0.3862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.247 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.536 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1188 REMARK 3 ANGLE : 1.558 1603 REMARK 3 CHIRALITY : 0.065 177 REMARK 3 PLANARITY : 0.008 211 REMARK 3 DIHEDRAL : 6.671 155 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.8534 16.8039 -30.8500 REMARK 3 T TENSOR REMARK 3 T11: 0.4427 T22: 0.3210 REMARK 3 T33: 0.5055 T12: 0.0210 REMARK 3 T13: 0.0921 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 3.5448 L22: 4.2385 REMARK 3 L33: 2.2051 L12: -0.1346 REMARK 3 L13: 0.2334 L23: 0.5777 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: -0.1595 S13: 0.1800 REMARK 3 S21: 0.6460 S22: 0.0444 S23: 0.5234 REMARK 3 S31: -0.0782 S32: -0.2269 S33: -0.0300 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9VY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 24-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1300061302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979176 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15877 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 84.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.1, 29.4% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, 0.5% W/V N-OCTYL-BETA-D-GLUCOSIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 59.52600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 59.52600 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.60450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.52600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.80225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.52600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.40675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.52600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.40675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.52600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.80225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 59.52600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 59.52600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.60450 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.52600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.52600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 39.60450 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.52600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 59.40675 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.52600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 19.80225 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.52600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 19.80225 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.52600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 59.40675 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.52600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.52600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 39.60450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -79.20900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 309 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 HIS A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 153 SM SM A 206 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 50 9.68 86.82 REMARK 500 GLU A 101 117.09 -167.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A 206 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 29 NZ REMARK 620 2 ASP A 44 OD2 60.3 REMARK 620 3 GLU A 70 OE1 112.9 82.4 REMARK 620 4 GLU A 70 OE2 121.7 132.2 51.5 REMARK 620 5 GLU A 106 OE1 46.1 79.5 75.8 77.6 REMARK 620 6 GLU A 153 OE2 96.1 84.3 135.8 136.0 141.9 REMARK 620 7 HOH A 310 O 77.3 135.2 130.5 81.1 81.2 86.7 REMARK 620 8 HOH A 312 O 142.8 145.9 99.5 65.6 134.3 70.6 67.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A 201 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 31 OE2 REMARK 620 2 GLU A 104 OE1 119.7 REMARK 620 3 GLU A 104 OE2 72.8 47.0 REMARK 620 4 ASP A 120 OD2 69.6 88.6 68.8 REMARK 620 5 GLU A 128 OE2 139.9 87.5 124.8 83.5 REMARK 620 6 GLU A 146 OE1 109.0 126.5 160.5 130.5 66.9 REMARK 620 7 GLU A 146 OE2 74.1 165.2 145.8 91.9 77.9 45.1 REMARK 620 8 GLN A 149 OE1 87.2 77.9 76.8 142.7 129.6 83.8 109.8 REMARK 620 9 HOH A 307 O 153.1 69.5 112.6 137.3 60.2 57.0 100.8 69.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A 204 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 35 OE1 REMARK 620 2 GLU A 35 OE2 53.9 REMARK 620 3 GLU A 37 OE1 10.2 54.1 REMARK 620 4 GLU A 37 OE2 4.6 52.5 6.0 REMARK 620 5 GLU A 56 OE1 125.7 79.9 118.7 121.8 REMARK 620 6 GLU A 56 OE2 116.3 64.6 118.5 116.1 47.9 REMARK 620 7 GLU A 66 OE1 161.6 132.9 169.8 166.2 71.4 68.4 REMARK 620 8 HOH A 305 O 82.9 127.1 88.8 86.5 151.0 128.6 81.0 REMARK 620 9 HOH A 306 O 77.1 65.4 86.6 80.7 110.8 63.1 90.7 77.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A 202 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 42 OE2 REMARK 620 2 ASP A 54 OD2 70.9 REMARK 620 3 GLU A 106 OE2 156.5 128.4 REMARK 620 4 GLU A 108 OE1 123.9 57.7 79.4 REMARK 620 5 GLU A 118 OE1 96.7 118.6 85.3 89.6 REMARK 620 6 GLU A 118 OE2 68.6 69.9 127.1 73.8 50.5 REMARK 620 7 HOH A 303 O 80.9 144.7 76.0 155.1 84.7 119.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A 203 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD2 REMARK 620 2 GLU A 68 OE1 74.3 REMARK 620 3 GLU A 68 OE2 114.6 50.2 REMARK 620 4 GLU A 108 OE2 74.2 87.5 72.1 REMARK 620 5 GLU A 118 OE2 71.9 145.3 143.7 76.1 REMARK 620 6 GLU A 132 OE2 155.7 120.7 72.1 86.8 89.2 REMARK 620 7 HOH A 301 O 148.2 84.3 64.2 128.9 129.7 56.1 REMARK 620 8 HOH A 302 O 101.2 135.7 141.4 134.7 60.2 81.3 77.9 REMARK 620 9 HOH A 308 O 67.4 75.1 117.2 140.8 98.6 132.3 84.7 63.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A 205 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 66 OE2 REMARK 620 2 GLU A 68 OE2 81.2 REMARK 620 3 GLU A 110 OE1 67.2 87.7 REMARK 620 4 GLU A 110 OE2 112.9 74.4 50.7 REMARK 620 5 GLU A 132 OE1 158.5 90.0 132.4 83.0 REMARK 620 6 GLU A 132 OE2 121.2 57.7 139.0 95.5 39.7 REMARK 620 7 GLU A 142 OE2 91.5 134.4 130.5 146.5 80.7 90.4 REMARK 620 8 HOH A 301 O 85.6 67.8 146.2 134.5 72.9 42.7 66.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: D_1300061689 RELATED DB: PDB-DEV REMARK 900 THE SAME PROTEIN BINDING WITH DIFFERENT RARE-EARTH IONS DBREF 9VY8 A 2 153 UNP Q1H2G7 Q1H2G7_METFK 24 175 SEQADV 9VY8 MET A 1 UNP Q1H2G7 INITIATING METHIONINE SEQRES 1 A 153 MET ASP HIS HIS PHE PRO LYS GLY LYS VAL SER LEU GLU SEQRES 2 A 153 THR CYS LEU GLU ALA ALA LEU LYS ALA LYS PRO GLY THR SEQRES 3 A 153 VAL VAL LYS VAL GLU TYR LYS LEU GLU GLY GLU THR PRO SEQRES 4 A 153 VAL TYR GLU PHE ASP ILE GLU SER SER ASP SER THR ALA SEQRES 5 A 153 TRP ASP VAL GLU CYS ASP ALA ASN THR GLY LYS ILE VAL SEQRES 6 A 153 GLU ILE GLU GLN GLU VAL ASP SER ALA ASP HIS PRO LEU SEQRES 7 A 153 PHE LYS ALA LYS GLN LYS VAL SER GLU ALA GLU ALA ARG SEQRES 8 A 153 LYS THR ALA LEU ALA ALA HIS PRO GLY GLU ILE VAL GLU SEQRES 9 A 153 VAL GLU TYR GLU ILE GLU GLU ASN GLY ALA ALA SER TYR SEQRES 10 A 153 GLU PHE ASP ILE LYS THR LYS ASP GLY LYS GLU PHE LYS SEQRES 11 A 153 VAL GLU VAL ASP ALA SER THR GLY LYS ILE VAL GLU ALA SEQRES 12 A 153 ASN GLN GLU PHE TYR GLN ILE GLY LYS GLU HET SM A 201 1 HET SM A 202 1 HET SM A 203 1 HET SM A 204 1 HET SM A 205 1 HET SM A 206 1 HETNAM SM SAMARIUM (III) ION FORMUL 2 SM 6(SM 3+) FORMUL 8 HOH *17(H2 O) HELIX 1 AA1 SER A 11 LYS A 23 1 13 HELIX 2 AA2 HIS A 76 ALA A 81 1 6 HELIX 3 AA3 SER A 86 HIS A 98 1 13 SHEET 1 AA1 9 THR A 26 GLU A 35 0 SHEET 2 AA1 9 THR A 38 GLU A 46 -1 O GLU A 46 N THR A 26 SHEET 3 AA1 9 ALA A 52 ASP A 58 -1 O VAL A 55 N PHE A 43 SHEET 4 AA1 9 ILE A 64 VAL A 71 -1 O GLU A 68 N ASP A 54 SHEET 5 AA1 9 GLU A 101 ILE A 109 -1 O ILE A 109 N GLN A 69 SHEET 6 AA1 9 ALA A 115 LYS A 122 -1 O SER A 116 N GLU A 108 SHEET 7 AA1 9 GLU A 128 ASP A 134 -1 O VAL A 131 N PHE A 119 SHEET 8 AA1 9 ILE A 140 ILE A 150 -1 O GLU A 146 N GLU A 128 SHEET 9 AA1 9 THR A 26 GLU A 35 -1 N VAL A 30 O ILE A 150 SSBOND 1 CYS A 15 CYS A 57 1555 1555 2.08 LINK NZ LYS A 29 SM SM A 206 1555 1555 3.35 LINK OE2 GLU A 31 SM SM A 201 1555 1555 2.51 LINK OE1 GLU A 35 SM SM A 204 1555 1555 2.69 LINK OE2 GLU A 35 SM SM A 204 1555 1555 2.01 LINK OE1 GLU A 37 SM SM A 204 1555 6554 2.69 LINK OE2 GLU A 37 SM SM A 204 1555 6554 2.38 LINK OE2 GLU A 42 SM SM A 202 1555 1555 2.25 LINK OD2 ASP A 44 SM SM A 206 1555 1555 2.54 LINK OD2 ASP A 54 SM SM A 202 1555 1555 2.58 LINK OD2 ASP A 54 SM SM A 203 1555 1555 2.64 LINK OE1 GLU A 56 SM SM A 204 1555 1555 2.50 LINK OE2 GLU A 56 SM SM A 204 1555 1555 2.86 LINK OE1 GLU A 66 SM SM A 204 1555 1555 2.73 LINK OE2 GLU A 66 SM SM A 205 1555 1555 2.34 LINK OE1 GLU A 68 SM SM A 203 1555 1555 2.31 LINK OE2 GLU A 68 SM SM A 203 1555 1555 2.69 LINK OE2 GLU A 68 SM SM A 205 1555 1555 2.55 LINK OE1 GLU A 70 SM SM A 206 1555 1555 2.45 LINK OE2 GLU A 70 SM SM A 206 1555 1555 2.51 LINK OE1 GLU A 104 SM SM A 201 1555 1555 2.22 LINK OE2 GLU A 104 SM SM A 201 1555 1555 3.00 LINK OE2 GLU A 106 SM SM A 202 1555 1555 2.17 LINK OE1 GLU A 106 SM SM A 206 1555 1555 2.45 LINK OE1 GLU A 108 SM SM A 202 1555 1555 2.27 LINK OE2 GLU A 108 SM SM A 203 1555 1555 2.23 LINK OE1 GLU A 110 SM SM A 205 1555 1555 2.68 LINK OE2 GLU A 110 SM SM A 205 1555 1555 2.37 LINK OE1 GLU A 118 SM SM A 202 1555 1555 2.38 LINK OE2 GLU A 118 SM SM A 202 1555 1555 2.64 LINK OE2 GLU A 118 SM SM A 203 1555 1555 2.46 LINK OD2 ASP A 120 SM SM A 201 1555 1555 2.45 LINK OE2 GLU A 128 SM SM A 201 1555 1555 2.66 LINK OE2 GLU A 132 SM SM A 203 1555 1555 2.32 LINK OE1 GLU A 132 SM SM A 205 1555 1555 2.40 LINK OE2 GLU A 132 SM SM A 205 1555 1555 3.39 LINK OE2 GLU A 142 SM SM A 205 1555 1555 2.41 LINK OE1 GLU A 146 SM SM A 201 1555 1555 3.10 LINK OE2 GLU A 146 SM SM A 201 1555 1555 2.21 LINK OE1 GLN A 149 SM SM A 201 1555 1555 2.06 LINK OE2 GLU A 153 SM SM A 206 1555 1555 2.57 LINK SM SM A 201 O HOH A 307 1555 1555 2.45 LINK SM SM A 202 O HOH A 303 1555 1555 2.38 LINK SM SM A 203 O HOH A 301 1555 1555 2.56 LINK SM SM A 203 O HOH A 302 1555 1555 2.25 LINK SM SM A 203 O HOH A 308 1555 1555 2.39 LINK SM SM A 204 O HOH A 305 1555 1555 2.35 LINK SM SM A 204 O HOH A 306 1555 1555 2.62 LINK SM SM A 205 O HOH A 301 1555 1555 2.46 LINK SM SM A 206 O HOH A 310 1555 1555 2.94 LINK SM SM A 206 O HOH A 312 1555 1555 2.83 CRYST1 119.052 119.052 79.209 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012625 0.00000 CONECT 182 820 CONECT 389 2300 CONECT 427 2295 CONECT 503 2298 CONECT 504 2298 CONECT 606 2296 CONECT 640 2300 CONECT 779 2296 2297 CONECT 807 2298 CONECT 808 2298 CONECT 820 182 CONECT 946 2298 CONECT 947 2299 CONECT 980 2297 CONECT 981 2297 2299 CONECT 1012 2300 CONECT 1013 2300 CONECT 1525 2295 CONECT 1526 2295 CONECT 1556 2300 CONECT 1557 2296 CONECT 1592 2296 CONECT 1593 2297 CONECT 1626 2299 CONECT 1627 2299 CONECT 1729 2296 CONECT 1730 2296 2297 CONECT 1764 2295 CONECT 1895 2295 CONECT 1967 2299 CONECT 1968 2297 2299 CONECT 2110 2299 CONECT 2165 2295 CONECT 2166 2295 CONECT 2221 2295 CONECT 2287 2300 CONECT 2295 427 1525 1526 1764 CONECT 2295 1895 2165 2166 2221 CONECT 2295 2307 CONECT 2296 606 779 1557 1592 CONECT 2296 1729 1730 2303 CONECT 2297 779 980 981 1593 CONECT 2297 1730 1968 2301 2302 CONECT 2297 2308 CONECT 2298 503 504 807 808 CONECT 2298 946 2305 2306 CONECT 2299 947 981 1626 1627 CONECT 2299 1967 1968 2110 2301 CONECT 2300 389 640 1012 1013 CONECT 2300 1556 2287 2310 2312 CONECT 2301 2297 2299 CONECT 2302 2297 CONECT 2303 2296 CONECT 2305 2298 CONECT 2306 2298 CONECT 2307 2295 CONECT 2308 2297 CONECT 2310 2300 CONECT 2312 2300 MASTER 398 0 6 3 9 0 0 6 1191 1 59 12 END