HEADER TRANSCRIPTION 04-SEP-25 9WNI TITLE WILD-TYPE MENIN COMPLEXED WITH KO-539 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MENIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEN1, SCG2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN MENIN, TRANSCRIPTION, M322I MUTANT INHIBITOR COMPLEX, DS1594 EXPDTA X-RAY DIFFRACTION AUTHOR S.BIJPURIA,B.M.MCKEEVER,G.M.MCGEEHAN REVDAT 1 29-APR-26 9WNI 0 JRNL AUTH S.BIJPURIA,B.M.MCKEEVER,G.M.MCGEEHAN JRNL TITL WILD-TYPE MENIN COMPLEXED WITH KO-539 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7193 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : 1.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.560 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.305 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.345 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7466 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7083 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10133 ; 1.443 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16267 ; 1.233 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 902 ; 6.762 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 398 ;32.531 ;21.658 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1249 ;17.279 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;15.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 936 ; 0.236 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8375 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1761 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3620 ; 2.295 ; 3.375 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3619 ; 2.295 ; 3.374 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4515 ; 3.743 ; 5.053 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4516 ; 3.743 ; 5.054 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3846 ; 2.448 ; 3.616 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3842 ; 2.449 ; 3.617 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5618 ; 4.089 ; 5.299 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8422 ; 6.457 ;38.587 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8356 ; 6.437 ;38.505 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9WNI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1300063393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953651 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.348 REMARK 200 RESOLUTION RANGE LOW (A) : 48.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7UJ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24%(W/V) PEG3350, 0.2M MAGNESIUM REMARK 280 NITRATE, 0.1M HEPES PH=7.8, 20%(V/V) ETHYLENE GLYCOL, PH7.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.42600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 53 REMARK 465 ILE A 54 REMARK 465 PRO A 55 REMARK 465 THR A 56 REMARK 465 ASN A 57 REMARK 465 VAL A 58 REMARK 465 PRO A 59 REMARK 465 GLU A 60 REMARK 465 LEU A 61 REMARK 465 THR A 62 REMARK 465 PHE A 63 REMARK 465 GLN A 64 REMARK 465 PRO A 65 REMARK 465 SER A 66 REMARK 465 PRO A 67 REMARK 465 ALA A 68 REMARK 465 PRO A 69 REMARK 465 ASP A 70 REMARK 465 PRO A 71 REMARK 465 GLY A 386 REMARK 465 GLU A 387 REMARK 465 GLU A 388 REMARK 465 ARG A 389 REMARK 465 PRO A 390 REMARK 465 GLY A 391 REMARK 465 GLU A 392 REMARK 465 GLN A 393 REMARK 465 SER A 394 REMARK 465 GLN A 395 REMARK 465 GLY A 396 REMARK 465 THR A 397 REMARK 465 GLN A 398 REMARK 465 SER A 399 REMARK 465 GLN A 400 REMARK 465 VAL B 53 REMARK 465 ILE B 54 REMARK 465 PRO B 55 REMARK 465 THR B 56 REMARK 465 ASN B 57 REMARK 465 VAL B 58 REMARK 465 PRO B 59 REMARK 465 GLU B 60 REMARK 465 LEU B 61 REMARK 465 THR B 62 REMARK 465 PHE B 63 REMARK 465 GLN B 64 REMARK 465 PRO B 65 REMARK 465 SER B 66 REMARK 465 PRO B 67 REMARK 465 ALA B 68 REMARK 465 PRO B 69 REMARK 465 ASP B 70 REMARK 465 PRO B 71 REMARK 465 PRO B 72 REMARK 465 GLY B 73 REMARK 465 GLY B 386 REMARK 465 GLU B 387 REMARK 465 GLU B 388 REMARK 465 ARG B 389 REMARK 465 PRO B 390 REMARK 465 GLY B 391 REMARK 465 GLU B 392 REMARK 465 GLN B 393 REMARK 465 SER B 394 REMARK 465 GLN B 395 REMARK 465 GLY B 396 REMARK 465 THR B 397 REMARK 465 GLN B 398 REMARK 465 SER B 399 REMARK 465 GLN B 400 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 49 -41.54 -144.50 REMARK 500 ASN A 51 79.81 -163.82 REMARK 500 PHE A 134 99.72 -62.39 REMARK 500 ASP A 180 17.71 -147.93 REMARK 500 ASN A 189 29.93 48.62 REMARK 500 SER A 226 37.58 -92.07 REMARK 500 ASP A 370 -55.69 -141.09 REMARK 500 GLN A 488 -50.93 -122.40 REMARK 500 GLU B 31 75.30 -116.03 REMARK 500 ALA B 49 -44.71 -131.44 REMARK 500 ASN B 51 82.78 -157.50 REMARK 500 HIS B 139 30.75 77.92 REMARK 500 SER B 178 -158.84 -91.62 REMARK 500 ASP B 180 16.52 -147.98 REMARK 500 ASN B 189 19.90 58.62 REMARK 500 LEU B 223 47.24 39.90 REMARK 500 LYS B 224 34.17 36.05 REMARK 500 SER B 226 38.73 -91.47 REMARK 500 ASP B 370 -70.33 -134.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 802 DISTANCE = 6.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 351 O REMARK 620 2 ASN A 352 OD1 83.4 REMARK 620 3 LYS A 422 O 105.0 169.7 REMARK 620 4 TRP A 423 O 81.5 113.6 74.0 REMARK 620 5 GLU A 425 O 161.5 91.1 82.6 84.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 351 O REMARK 620 2 ASN B 352 OD1 86.5 REMARK 620 3 TRP B 423 O 90.7 106.9 REMARK 620 4 GLU B 425 O 166.4 82.5 84.9 REMARK 620 N 1 2 3 DBREF 9WNI A 2 457 UNP O00255 MEN1_HUMAN 2 457 DBREF 9WNI A 458 489 UNP O00255 MEN1_HUMAN 551 583 DBREF 9WNI B 2 457 UNP O00255 MEN1_HUMAN 2 457 DBREF 9WNI B 458 489 UNP O00255 MEN1_HUMAN 551 583 SEQADV 9WNI THR A 5 UNP O00255 ALA 5 ENGINEERED MUTATION SEQADV 9WNI THR B 5 UNP O00255 ALA 5 ENGINEERED MUTATION SEQRES 1 A 488 GLY LEU LYS THR ALA GLN LYS THR LEU PHE PRO LEU ARG SEQRES 2 A 488 SER ILE ASP ASP VAL VAL ARG LEU PHE ALA ALA GLU LEU SEQRES 3 A 488 GLY ARG GLU GLU PRO ASP LEU VAL LEU LEU SER LEU VAL SEQRES 4 A 488 LEU GLY PHE VAL GLU HIS PHE LEU ALA VAL ASN ARG VAL SEQRES 5 A 488 ILE PRO THR ASN VAL PRO GLU LEU THR PHE GLN PRO SER SEQRES 6 A 488 PRO ALA PRO ASP PRO PRO GLY GLY LEU THR TYR PHE PRO SEQRES 7 A 488 VAL ALA ASP LEU SER ILE ILE ALA ALA LEU TYR ALA ARG SEQRES 8 A 488 PHE THR ALA GLN ILE ARG GLY ALA VAL ASP LEU SER LEU SEQRES 9 A 488 TYR PRO ARG GLU GLY GLY VAL SER SER ARG GLU LEU VAL SEQRES 10 A 488 LYS LYS VAL SER ASP VAL ILE TRP ASN SER LEU SER ARG SEQRES 11 A 488 SER TYR PHE LYS ASP ARG ALA HIS ILE GLN SER LEU PHE SEQRES 12 A 488 SER PHE ILE THR GLY THR LYS LEU ASP SER SER GLY VAL SEQRES 13 A 488 ALA PHE ALA VAL VAL GLY ALA CYS GLN ALA LEU GLY LEU SEQRES 14 A 488 ARG ASP VAL HIS LEU ALA LEU SER GLU ASP HIS ALA TRP SEQRES 15 A 488 VAL VAL PHE GLY PRO ASN GLY GLU GLN THR ALA GLU VAL SEQRES 16 A 488 THR TRP HIS GLY LYS GLY ASN GLU ASP ARG ARG GLY GLN SEQRES 17 A 488 THR VAL ASN ALA GLY VAL ALA GLU ARG SER TRP LEU TYR SEQRES 18 A 488 LEU LYS GLY SER TYR MET ARG CYS ASP ARG LYS MET GLU SEQRES 19 A 488 VAL ALA PHE MET VAL CYS ALA ILE ASN PRO SER ILE ASP SEQRES 20 A 488 LEU HIS THR ASP SER LEU GLU LEU LEU GLN LEU GLN GLN SEQRES 21 A 488 LYS LEU LEU TRP LEU LEU TYR ASP LEU GLY HIS LEU GLU SEQRES 22 A 488 ARG TYR PRO MET ALA LEU GLY ASN LEU ALA ASP LEU GLU SEQRES 23 A 488 GLU LEU GLU PRO THR PRO GLY ARG PRO ASP PRO LEU THR SEQRES 24 A 488 LEU TYR HIS LYS GLY ILE ALA SER ALA LYS THR TYR TYR SEQRES 25 A 488 ARG ASP GLU HIS ILE TYR PRO TYR MET TYR LEU ALA GLY SEQRES 26 A 488 TYR HIS CYS ARG ASN ARG ASN VAL ARG GLU ALA LEU GLN SEQRES 27 A 488 ALA TRP ALA ASP THR ALA THR VAL ILE GLN ASP TYR ASN SEQRES 28 A 488 TYR CYS ARG GLU ASP GLU GLU ILE TYR LYS GLU PHE PHE SEQRES 29 A 488 GLU VAL ALA ASN ASP VAL ILE PRO ASN LEU LEU LYS GLU SEQRES 30 A 488 ALA ALA SER LEU LEU GLU ALA GLY GLU GLU ARG PRO GLY SEQRES 31 A 488 GLU GLN SER GLN GLY THR GLN SER GLN GLY SER ALA LEU SEQRES 32 A 488 GLN ASP PRO GLU CYS PHE ALA HIS LEU LEU ARG PHE TYR SEQRES 33 A 488 ASP GLY ILE CYS LYS TRP GLU GLU GLY SER PRO THR PRO SEQRES 34 A 488 VAL LEU HIS VAL GLY TRP ALA THR PHE LEU VAL GLN SER SEQRES 35 A 488 LEU GLY ARG PHE GLU GLY GLN VAL ARG GLN LYS VAL ARG SEQRES 36 A 488 ILE THR PHE GLN SER GLU LYS MET LYS GLY MET LYS GLU SEQRES 37 A 488 LEU LEU VAL ALA THR LYS ILE ASN SER SER ALA ILE LYS SEQRES 38 A 488 LEU GLN LEU THR ALA GLN SER SEQRES 1 B 488 GLY LEU LYS THR ALA GLN LYS THR LEU PHE PRO LEU ARG SEQRES 2 B 488 SER ILE ASP ASP VAL VAL ARG LEU PHE ALA ALA GLU LEU SEQRES 3 B 488 GLY ARG GLU GLU PRO ASP LEU VAL LEU LEU SER LEU VAL SEQRES 4 B 488 LEU GLY PHE VAL GLU HIS PHE LEU ALA VAL ASN ARG VAL SEQRES 5 B 488 ILE PRO THR ASN VAL PRO GLU LEU THR PHE GLN PRO SER SEQRES 6 B 488 PRO ALA PRO ASP PRO PRO GLY GLY LEU THR TYR PHE PRO SEQRES 7 B 488 VAL ALA ASP LEU SER ILE ILE ALA ALA LEU TYR ALA ARG SEQRES 8 B 488 PHE THR ALA GLN ILE ARG GLY ALA VAL ASP LEU SER LEU SEQRES 9 B 488 TYR PRO ARG GLU GLY GLY VAL SER SER ARG GLU LEU VAL SEQRES 10 B 488 LYS LYS VAL SER ASP VAL ILE TRP ASN SER LEU SER ARG SEQRES 11 B 488 SER TYR PHE LYS ASP ARG ALA HIS ILE GLN SER LEU PHE SEQRES 12 B 488 SER PHE ILE THR GLY THR LYS LEU ASP SER SER GLY VAL SEQRES 13 B 488 ALA PHE ALA VAL VAL GLY ALA CYS GLN ALA LEU GLY LEU SEQRES 14 B 488 ARG ASP VAL HIS LEU ALA LEU SER GLU ASP HIS ALA TRP SEQRES 15 B 488 VAL VAL PHE GLY PRO ASN GLY GLU GLN THR ALA GLU VAL SEQRES 16 B 488 THR TRP HIS GLY LYS GLY ASN GLU ASP ARG ARG GLY GLN SEQRES 17 B 488 THR VAL ASN ALA GLY VAL ALA GLU ARG SER TRP LEU TYR SEQRES 18 B 488 LEU LYS GLY SER TYR MET ARG CYS ASP ARG LYS MET GLU SEQRES 19 B 488 VAL ALA PHE MET VAL CYS ALA ILE ASN PRO SER ILE ASP SEQRES 20 B 488 LEU HIS THR ASP SER LEU GLU LEU LEU GLN LEU GLN GLN SEQRES 21 B 488 LYS LEU LEU TRP LEU LEU TYR ASP LEU GLY HIS LEU GLU SEQRES 22 B 488 ARG TYR PRO MET ALA LEU GLY ASN LEU ALA ASP LEU GLU SEQRES 23 B 488 GLU LEU GLU PRO THR PRO GLY ARG PRO ASP PRO LEU THR SEQRES 24 B 488 LEU TYR HIS LYS GLY ILE ALA SER ALA LYS THR TYR TYR SEQRES 25 B 488 ARG ASP GLU HIS ILE TYR PRO TYR MET TYR LEU ALA GLY SEQRES 26 B 488 TYR HIS CYS ARG ASN ARG ASN VAL ARG GLU ALA LEU GLN SEQRES 27 B 488 ALA TRP ALA ASP THR ALA THR VAL ILE GLN ASP TYR ASN SEQRES 28 B 488 TYR CYS ARG GLU ASP GLU GLU ILE TYR LYS GLU PHE PHE SEQRES 29 B 488 GLU VAL ALA ASN ASP VAL ILE PRO ASN LEU LEU LYS GLU SEQRES 30 B 488 ALA ALA SER LEU LEU GLU ALA GLY GLU GLU ARG PRO GLY SEQRES 31 B 488 GLU GLN SER GLN GLY THR GLN SER GLN GLY SER ALA LEU SEQRES 32 B 488 GLN ASP PRO GLU CYS PHE ALA HIS LEU LEU ARG PHE TYR SEQRES 33 B 488 ASP GLY ILE CYS LYS TRP GLU GLU GLY SER PRO THR PRO SEQRES 34 B 488 VAL LEU HIS VAL GLY TRP ALA THR PHE LEU VAL GLN SER SEQRES 35 B 488 LEU GLY ARG PHE GLU GLY GLN VAL ARG GLN LYS VAL ARG SEQRES 36 B 488 ILE THR PHE GLN SER GLU LYS MET LYS GLY MET LYS GLU SEQRES 37 B 488 LEU LEU VAL ALA THR LYS ILE ASN SER SER ALA ILE LYS SEQRES 38 B 488 LEU GLN LEU THR ALA GLN SER HET K5O A 501 49 HET MG A 502 1 HET K5O B 501 49 HET MG B 502 1 HETNAM K5O ZIFTOMENIB HETNAM MG MAGNESIUM ION FORMUL 3 K5O 2(C33 H42 F3 N9 O2 S2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *425(H2 O) HELIX 1 AA1 LYS A 4 THR A 9 1 6 HELIX 2 AA2 SER A 15 LEU A 27 1 13 HELIX 3 AA3 ASP A 33 PHE A 47 1 15 HELIX 4 AA4 ASP A 82 VAL A 101 1 20 HELIX 5 AA5 ASP A 102 TYR A 106 5 5 HELIX 6 AA6 SER A 114 SER A 128 1 15 HELIX 7 AA7 SER A 142 THR A 150 1 9 HELIX 8 AA8 ASP A 153 LEU A 168 1 16 HELIX 9 AA9 GLY A 187 GLU A 191 5 5 HELIX 10 AB1 VAL A 211 ARG A 218 1 8 HELIX 11 AB2 SER A 219 SER A 226 5 8 HELIX 12 AB3 ASP A 231 ALA A 242 1 12 HELIX 13 AB4 SER A 253 LEU A 270 1 18 HELIX 14 AB5 TYR A 276 GLU A 290 1 15 HELIX 15 AB6 ASP A 297 TYR A 313 1 17 HELIX 16 AB7 ILE A 318 ASN A 331 1 14 HELIX 17 AB8 ASN A 333 GLN A 349 1 17 HELIX 18 AB9 CYS A 354 GLU A 356 5 3 HELIX 19 AC1 ASP A 357 ASP A 370 1 14 HELIX 20 AC2 ASP A 370 LEU A 383 1 14 HELIX 21 AC3 SER A 402 GLN A 405 5 4 HELIX 22 AC4 ASP A 406 GLU A 425 1 20 HELIX 23 AC5 HIS A 433 GLY A 445 1 13 HELIX 24 AC6 GLU A 448 GLN A 453 1 6 HELIX 25 AC7 SER A 461 GLY A 466 1 6 HELIX 26 AC8 MET A 467 ALA A 473 1 7 HELIX 27 AC9 ASN A 477 ALA A 487 1 11 HELIX 28 AD1 LYS B 4 THR B 9 1 6 HELIX 29 AD2 SER B 15 ARG B 29 1 15 HELIX 30 AD3 ASP B 33 VAL B 50 1 18 HELIX 31 AD4 ASP B 82 VAL B 101 1 20 HELIX 32 AD5 ASP B 102 TYR B 106 5 5 HELIX 33 AD6 SER B 114 SER B 128 1 15 HELIX 34 AD7 SER B 142 THR B 150 1 9 HELIX 35 AD8 ASP B 153 LEU B 168 1 16 HELIX 36 AD9 GLY B 187 GLU B 191 5 5 HELIX 37 AE1 VAL B 211 GLU B 217 1 7 HELIX 38 AE2 SER B 219 SER B 226 5 8 HELIX 39 AE3 ASP B 231 ALA B 242 1 12 HELIX 40 AE4 SER B 253 LEU B 270 1 18 HELIX 41 AE5 TYR B 276 GLU B 290 1 15 HELIX 42 AE6 ASP B 297 TYR B 313 1 17 HELIX 43 AE7 ILE B 318 ASN B 331 1 14 HELIX 44 AE8 ASN B 333 GLN B 349 1 17 HELIX 45 AE9 ASP B 357 ASP B 370 1 14 HELIX 46 AF1 ASP B 370 ALA B 385 1 16 HELIX 47 AF2 SER B 402 GLN B 405 5 4 HELIX 48 AF3 ASP B 406 GLU B 425 1 20 HELIX 49 AF4 HIS B 433 GLY B 445 1 13 HELIX 50 AF5 GLU B 448 GLN B 453 1 6 HELIX 51 AF6 SER B 461 GLY B 466 1 6 HELIX 52 AF7 MET B 467 ALA B 473 1 7 HELIX 53 AF8 ASN B 477 ALA B 487 1 11 SHEET 1 AA1 4 GLN A 192 ALA A 194 0 SHEET 2 AA1 4 ALA A 182 PHE A 186 -1 N VAL A 184 O ALA A 194 SHEET 3 AA1 4 HIS A 174 LEU A 177 -1 N HIS A 174 O VAL A 185 SHEET 4 AA1 4 MET A 228 ARG A 229 -1 O MET A 228 N LEU A 177 SHEET 1 AA2 2 SER A 246 ASP A 248 0 SHEET 2 AA2 2 THR A 251 ASP A 252 -1 O THR A 251 N ILE A 247 SHEET 1 AA3 4 GLN B 192 ALA B 194 0 SHEET 2 AA3 4 ALA B 182 PHE B 186 -1 N VAL B 184 O ALA B 194 SHEET 3 AA3 4 HIS B 174 LEU B 177 -1 N HIS B 174 O VAL B 185 SHEET 4 AA3 4 MET B 228 ARG B 229 -1 O MET B 228 N LEU B 177 LINK O TYR A 351 MG MG A 502 1555 1555 2.52 LINK OD1 ASN A 352 MG MG A 502 1555 1555 2.61 LINK O LYS A 422 MG MG A 502 1555 1555 2.97 LINK O TRP A 423 MG MG A 502 1555 1555 2.61 LINK O GLU A 425 MG MG A 502 1555 1555 2.19 LINK O TYR B 351 MG MG B 502 1555 1555 2.32 LINK OD1 ASN B 352 MG MG B 502 1555 1555 2.74 LINK O TRP B 423 MG MG B 502 1555 1555 2.58 LINK O GLU B 425 MG MG B 502 1555 1555 2.20 CISPEP 1 PHE A 11 PRO A 12 0 -1.23 CISPEP 2 PHE B 11 PRO B 12 0 2.09 CRYST1 70.089 78.852 93.340 90.00 101.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014268 0.000000 0.002912 0.00000 SCALE2 0.000000 0.012682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010934 0.00000 CONECT 2614 7250 CONECT 2629 7250 CONECT 3069 7250 CONECT 3078 7250 CONECT 3101 7250 CONECT 6211 7300 CONECT 6226 7300 CONECT 6675 7300 CONECT 6698 7300 CONECT 7201 7202 CONECT 7202 7201 7203 CONECT 7203 7202 7204 7249 CONECT 7204 7203 7205 CONECT 7205 7204 7206 7239 CONECT 7206 7205 7207 CONECT 7207 7206 7208 7238 CONECT 7208 7207 7209 CONECT 7209 7208 7210 CONECT 7210 7209 7211 7237 CONECT 7211 7210 7212 CONECT 7212 7211 7213 7233 CONECT 7213 7212 7214 CONECT 7214 7213 7215 CONECT 7215 7214 7216 7232 CONECT 7216 7215 7217 7230 CONECT 7217 7216 7218 CONECT 7218 7217 7219 7220 CONECT 7219 7218 CONECT 7220 7218 7221 7225 CONECT 7221 7220 7222 CONECT 7222 7221 7223 CONECT 7223 7222 7224 7226 CONECT 7224 7223 7225 CONECT 7225 7220 7224 CONECT 7226 7223 7227 7228 7229 CONECT 7227 7226 CONECT 7228 7226 CONECT 7229 7226 CONECT 7230 7216 7231 7235 CONECT 7231 7230 7232 CONECT 7232 7215 7231 7233 CONECT 7233 7212 7232 7234 CONECT 7234 7233 CONECT 7235 7230 7236 CONECT 7236 7235 CONECT 7237 7210 7238 CONECT 7238 7207 7237 CONECT 7239 7205 7240 7248 CONECT 7240 7239 7241 CONECT 7241 7240 7242 7247 CONECT 7242 7241 7243 CONECT 7243 7242 7244 7245 7246 CONECT 7244 7243 CONECT 7245 7243 CONECT 7246 7243 CONECT 7247 7241 7248 CONECT 7248 7239 7247 7249 CONECT 7249 7203 7248 CONECT 7250 2614 2629 3069 3078 CONECT 7250 3101 CONECT 7251 7252 CONECT 7252 7251 7253 CONECT 7253 7252 7254 7299 CONECT 7254 7253 7255 CONECT 7255 7254 7256 7289 CONECT 7256 7255 7257 CONECT 7257 7256 7258 7288 CONECT 7258 7257 7259 CONECT 7259 7258 7260 CONECT 7260 7259 7261 7287 CONECT 7261 7260 7262 CONECT 7262 7261 7263 7283 CONECT 7263 7262 7264 CONECT 7264 7263 7265 CONECT 7265 7264 7266 7282 CONECT 7266 7265 7267 7280 CONECT 7267 7266 7268 CONECT 7268 7267 7269 7270 CONECT 7269 7268 CONECT 7270 7268 7271 7275 CONECT 7271 7270 7272 CONECT 7272 7271 7273 CONECT 7273 7272 7274 7276 CONECT 7274 7273 7275 CONECT 7275 7270 7274 CONECT 7276 7273 7277 7278 7279 CONECT 7277 7276 CONECT 7278 7276 CONECT 7279 7276 CONECT 7280 7266 7281 7285 CONECT 7281 7280 7282 CONECT 7282 7265 7281 7283 CONECT 7283 7262 7282 7284 CONECT 7284 7283 CONECT 7285 7280 7286 CONECT 7286 7285 CONECT 7287 7260 7288 CONECT 7288 7257 7287 CONECT 7289 7255 7290 7298 CONECT 7290 7289 7291 CONECT 7291 7290 7292 7297 CONECT 7292 7291 7293 CONECT 7293 7292 7294 7295 7296 CONECT 7294 7293 CONECT 7295 7293 CONECT 7296 7293 CONECT 7297 7291 7298 CONECT 7298 7289 7297 7299 CONECT 7299 7253 7298 CONECT 7300 6211 6226 6675 6698 MASTER 383 0 4 53 10 0 0 6 7718 2 110 76 END