HEADER LIGASE 11-SEP-25 9WQS TITLE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE ISOLEUCYL-TRNA TITLE 2 SYNTHETASE IN COMPLEX WITH REVEROMYCIN A AND ISOLEUCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOLEUCINE--TRNA LIGASE, CYTOPLASMIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ISOLEUCYL-TRNA SYNTHETASE,ILERS; COMPND 5 EC: 6.1.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 GENE: ILS1, YBL076C, YBL0734; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOLEUCYL-TRNA SYNTHETASE, REVEROMYCIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.CHEN,F.YI,H.ZHOU REVDAT 1 08-APR-26 9WQS 0 JRNL AUTH B.CHEN,F.YI,H.QI,J.XU,J.SU,H.ZHOU,H.LIU JRNL TITL SUBSTRATE L-ISOLEUCINE FACILITATES THE HYPER INHIBITION OF JRNL TITL 2 REVEROMYCIN A ON HUMAN CYTOPLASMIC ISOLEUCYL-TRNA JRNL TITL 3 SYNTHETASE. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 780 10789 2026 JRNL REFN ESSN 1096-0384 JRNL PMID 41839287 JRNL DOI 10.1016/J.ABB.2026.110789 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 35709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2814 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : 3.88000 REMARK 3 B33 (A**2) : -1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.632 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.312 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.240 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7442 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6746 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10149 ; 1.274 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15475 ; 1.272 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 917 ; 6.299 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 370 ;35.009 ;22.892 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1138 ;14.635 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.805 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 985 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8512 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1740 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3673 ; 2.214 ; 4.427 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3672 ; 2.214 ; 4.428 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4587 ; 3.520 ; 6.641 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4588 ; 3.520 ; 6.640 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3769 ; 2.204 ; 4.424 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3770 ; 2.203 ; 4.424 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5563 ; 3.528 ; 6.579 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8157 ; 5.133 ;49.793 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8131 ; 5.118 ;49.787 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9WQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 17-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1300063537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37560 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PH 7.0 AND 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.53950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.22050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.53950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.22050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 ASN A 334 REMARK 465 ALA A 335 REMARK 465 ALA A 336 REMARK 465 CYS A 337 REMARK 465 LEU A 338 REMARK 465 LYS A 339 REMARK 465 LYS A 895 REMARK 465 ALA A 896 REMARK 465 VAL A 897 REMARK 465 ALA A 898 REMARK 465 ASP A 899 REMARK 465 TRP A 900 REMARK 465 PRO A 901 REMARK 465 VAL A 902 REMARK 465 LEU A 903 REMARK 465 GLY A 904 REMARK 465 LYS A 905 REMARK 465 LYS A 906 REMARK 465 LEU A 907 REMARK 465 LYS A 908 REMARK 465 LYS A 909 REMARK 465 ASP A 910 REMARK 465 ALA A 911 REMARK 465 LYS A 912 REMARK 465 LYS A 913 REMARK 465 VAL A 914 REMARK 465 LYS A 915 REMARK 465 ASP A 916 REMARK 465 ALA A 917 REMARK 465 LEU A 918 REMARK 465 PRO A 919 REMARK 465 SER A 920 REMARK 465 VAL A 921 REMARK 465 THR A 922 REMARK 465 SER A 923 REMARK 465 GLU A 924 REMARK 465 GLN A 925 REMARK 465 VAL A 926 REMARK 465 ARG A 927 REMARK 465 GLU A 928 REMARK 465 TYR A 929 REMARK 465 LEU A 930 REMARK 465 GLU A 931 REMARK 465 SER A 932 REMARK 465 GLY A 933 REMARK 465 LYS A 934 REMARK 465 LEU A 935 REMARK 465 GLU A 936 REMARK 465 VAL A 937 REMARK 465 ALA A 938 REMARK 465 GLY A 939 REMARK 465 ILE A 940 REMARK 465 GLU A 941 REMARK 465 LEU A 942 REMARK 465 VAL A 943 REMARK 465 LYS A 944 REMARK 465 GLY A 945 REMARK 465 ASP A 946 REMARK 465 LEU A 947 REMARK 465 ASN A 948 REMARK 465 ALA A 949 REMARK 465 SER A 984 REMARK 465 HIS A 985 REMARK 465 HIS A 986 REMARK 465 HIS A 987 REMARK 465 HIS A 988 REMARK 465 HIS A 989 REMARK 465 HIS A 990 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 7 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 37 CE NZ REMARK 470 ILE A 91 CD1 REMARK 470 LYS A 97 CD CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 ASP A 105 CG OD1 OD2 REMARK 470 VAL A 107 CG1 CG2 REMARK 470 PHE A 108 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 123 CG1 REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 LYS A 132 CD CE NZ REMARK 470 LYS A 168 CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 LYS A 267 CD CE NZ REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LYS A 270 CD CE NZ REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 ILE A 280 CD1 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 THR A 304 OG1 CG2 REMARK 470 ARG A 307 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 313 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 340 CG OD1 ND2 REMARK 470 ILE A 343 CG1 CG2 CD1 REMARK 470 GLU A 345 CG CD OE1 OE2 REMARK 470 ASP A 346 CG OD1 OD2 REMARK 470 SER A 347 OG REMARK 470 VAL A 348 CG1 CG2 REMARK 470 LEU A 349 CG CD1 CD2 REMARK 470 ILE A 353 CG1 CG2 CD1 REMARK 470 LYS A 361 CG CD CE NZ REMARK 470 LYS A 421 CD CE NZ REMARK 470 LYS A 433 CD CE NZ REMARK 470 LYS A 444 CD CE NZ REMARK 470 ARG A 454 NE CZ NH1 NH2 REMARK 470 TYR A 463 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 486 CD CE NZ REMARK 470 ARG A 495 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 510 O REMARK 470 LYS A 513 CD CE NZ REMARK 470 GLU A 548 CG CD OE1 OE2 REMARK 470 LYS A 549 CG CD CE NZ REMARK 470 GLU A 552 CG CD OE1 OE2 REMARK 470 ARG A 567 NE CZ NH1 NH2 REMARK 470 ARG A 601 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 602 CG CD CE NZ REMARK 470 SER A 604 OG REMARK 470 SER A 606 OG REMARK 470 LEU A 607 CG CD1 CD2 REMARK 470 LYS A 608 CG CD CE NZ REMARK 470 TYR A 610 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 619 CD CE NZ REMARK 470 LYS A 636 CD CE NZ REMARK 470 GLU A 645 CG CD OE1 OE2 REMARK 470 LYS A 653 CG CD CE NZ REMARK 470 LYS A 663 CD CE NZ REMARK 470 LYS A 673 CG CD CE NZ REMARK 470 LYS A 674 CD CE NZ REMARK 470 LYS A 722 CE NZ REMARK 470 ARG A 739 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 740 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 743 CD CE NZ REMARK 470 GLU A 790 CG CD OE1 OE2 REMARK 470 LYS A 795 CD CE NZ REMARK 470 LYS A 798 CG CD CE NZ REMARK 470 ILE A 820 CD1 REMARK 470 LYS A 840 CG CD CE NZ REMARK 470 LYS A 846 CG CD CE NZ REMARK 470 GLU A 874 CG CD OE1 OE2 REMARK 470 GLU A 893 CG CD OE1 OE2 REMARK 470 TYR A 894 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 950 CG1 CG2 CD1 REMARK 470 GLU A 955 CG CD OE1 OE2 REMARK 470 GLU A 981 CG CD OE1 OE2 REMARK 470 LYS A 983 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 305 -163.44 -123.27 REMARK 500 PRO A 350 115.23 -39.88 REMARK 500 VAL A 363 78.55 -111.87 REMARK 500 VAL A 420 -34.96 -130.27 REMARK 500 LYS A 444 -86.34 -114.44 REMARK 500 VAL A 654 -66.40 -120.09 REMARK 500 LYS A 674 -60.59 -91.98 REMARK 500 TRP A 733 -61.30 -132.47 REMARK 500 THR A 773 76.77 -118.45 REMARK 500 ASP A 969 -74.44 -134.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 9WQS A 1 984 UNP P09436 SYIC_YEAST 1 984 SEQADV 9WQS HIS A 985 UNP P09436 EXPRESSION TAG SEQADV 9WQS HIS A 986 UNP P09436 EXPRESSION TAG SEQADV 9WQS HIS A 987 UNP P09436 EXPRESSION TAG SEQADV 9WQS HIS A 988 UNP P09436 EXPRESSION TAG SEQADV 9WQS HIS A 989 UNP P09436 EXPRESSION TAG SEQADV 9WQS HIS A 990 UNP P09436 EXPRESSION TAG SEQRES 1 A 990 MET SER GLU SER ASN ALA HIS PHE SER PHE PRO LYS GLU SEQRES 2 A 990 GLU GLU LYS VAL LEU SER LEU TRP ASP GLU ILE ASP ALA SEQRES 3 A 990 PHE HIS THR SER LEU GLU LEU THR LYS ASP LYS PRO GLU SEQRES 4 A 990 PHE SER PHE PHE ASP GLY PRO PRO PHE ALA THR GLY THR SEQRES 5 A 990 PRO HIS TYR GLY HIS ILE LEU ALA SER THR ILE LYS ASP SEQRES 6 A 990 ILE VAL PRO ARG TYR ALA THR MET THR GLY HIS HIS VAL SEQRES 7 A 990 GLU ARG ARG PHE GLY TRP ASP THR HIS GLY VAL PRO ILE SEQRES 8 A 990 GLU HIS ILE ILE ASP LYS LYS LEU GLY ILE THR GLY LYS SEQRES 9 A 990 ASP ASP VAL PHE LYS TYR GLY LEU GLU ASN TYR ASN ASN SEQRES 10 A 990 GLU CYS ARG SER ILE VAL MET THR TYR ALA SER ASP TRP SEQRES 11 A 990 ARG LYS THR ILE GLY ARG LEU GLY ARG TRP ILE ASP PHE SEQRES 12 A 990 ASP ASN ASP TYR LYS THR MET TYR PRO SER PHE MET GLU SEQRES 13 A 990 SER THR TRP TRP ALA PHE LYS GLN LEU HIS GLU LYS GLY SEQRES 14 A 990 GLN VAL TYR ARG GLY PHE LYS VAL MET PRO TYR SER THR SEQRES 15 A 990 GLY LEU THR THR PRO LEU SER ASN PHE GLU ALA GLN GLN SEQRES 16 A 990 ASN TYR LYS ASP VAL ASN ASP PRO ALA VAL THR ILE GLY SEQRES 17 A 990 PHE ASN VAL ILE GLY GLN GLU LYS THR GLN LEU VAL ALA SEQRES 18 A 990 TRP THR THR THR PRO TRP THR LEU PRO SER ASN LEU SER SEQRES 19 A 990 LEU CYS VAL ASN ALA ASP PHE GLU TYR VAL LYS ILE TYR SEQRES 20 A 990 ASP GLU THR ARG ASP ARG TYR PHE ILE LEU LEU GLU SER SEQRES 21 A 990 LEU ILE LYS THR LEU TYR LYS LYS PRO LYS ASN GLU LYS SEQRES 22 A 990 TYR LYS ILE VAL GLU LYS ILE LYS GLY SER ASP LEU VAL SEQRES 23 A 990 GLY LEU LYS TYR GLU PRO LEU PHE PRO TYR PHE ALA GLU SEQRES 24 A 990 GLN PHE HIS GLU THR ALA PHE ARG VAL ILE SER ASP ASP SEQRES 25 A 990 TYR VAL THR SER ASP SER GLY THR GLY ILE VAL HIS ASN SEQRES 26 A 990 ALA PRO ALA PHE GLY GLU GLU ASP ASN ALA ALA CYS LEU SEQRES 27 A 990 LYS ASN GLY VAL ILE SER GLU ASP SER VAL LEU PRO ASN SEQRES 28 A 990 ALA ILE ASP ASP LEU GLY ARG PHE THR LYS ASP VAL PRO SEQRES 29 A 990 ASP PHE GLU GLY VAL TYR VAL LYS ASP ALA ASP LYS LEU SEQRES 30 A 990 ILE ILE LYS TYR LEU THR ASN THR GLY ASN LEU LEU LEU SEQRES 31 A 990 ALA SER GLN ILE ARG HIS SER TYR PRO PHE CYS TRP ARG SEQRES 32 A 990 SER ASP THR PRO LEU LEU TYR ARG SER VAL PRO ALA TRP SEQRES 33 A 990 PHE VAL ARG VAL LYS ASN ILE VAL PRO GLN MET LEU ASP SEQRES 34 A 990 SER VAL MET LYS SER HIS TRP VAL PRO ASN THR ILE LYS SEQRES 35 A 990 GLU LYS ARG PHE ALA ASN TRP ILE ALA ASN ALA ARG ASP SEQRES 36 A 990 TRP ASN VAL SER ARG ASN ARG TYR TRP GLY THR PRO ILE SEQRES 37 A 990 PRO LEU TRP VAL SER ASP ASP PHE GLU GLU VAL VAL CYS SEQRES 38 A 990 VAL GLY SER ILE LYS GLU LEU GLU GLU LEU THR GLY VAL SEQRES 39 A 990 ARG ASN ILE THR ASP LEU HIS ARG ASP VAL ILE ASP LYS SEQRES 40 A 990 LEU THR ILE PRO SER LYS GLN GLY LYS GLY ASP LEU LYS SEQRES 41 A 990 ARG ILE GLU GLU VAL PHE ASP CYS TRP PHE GLU SER GLY SEQRES 42 A 990 SER MET PRO TYR ALA SER GLN HIS TYR PRO PHE GLU ASN SEQRES 43 A 990 THR GLU LYS PHE ASP GLU ARG VAL PRO ALA ASN PHE ILE SEQRES 44 A 990 SER GLU GLY LEU ASP GLN THR ARG GLY TRP PHE TYR THR SEQRES 45 A 990 LEU ALA VAL LEU GLY THR HIS LEU PHE GLY SER VAL PRO SEQRES 46 A 990 TYR LYS ASN VAL ILE VAL SER GLY ILE VAL LEU ALA ALA SEQRES 47 A 990 ASP GLY ARG LYS MET SER LYS SER LEU LYS ASN TYR PRO SEQRES 48 A 990 ASP PRO SER ILE VAL LEU ASN LYS TYR GLY ALA ASP ALA SEQRES 49 A 990 LEU ARG LEU TYR LEU ILE ASN SER PRO VAL LEU LYS ALA SEQRES 50 A 990 GLU SER LEU LYS PHE LYS GLU GLU GLY VAL LYS GLU VAL SEQRES 51 A 990 VAL SER LYS VAL LEU LEU PRO TRP TRP ASN SER PHE LYS SEQRES 52 A 990 PHE LEU ASP GLY GLN ILE ALA LEU LEU LYS LYS MET SER SEQRES 53 A 990 ASN ILE ASP PHE GLN TYR ASP ASP SER VAL LYS SER ASP SEQRES 54 A 990 ASN VAL MET ASP ARG TRP ILE LEU ALA SER MET GLN SER SEQRES 55 A 990 LEU VAL GLN PHE ILE HIS GLU GLU MET GLY GLN TYR LYS SEQRES 56 A 990 LEU TYR THR VAL VAL PRO LYS LEU LEU ASN PHE ILE ASP SEQRES 57 A 990 GLU LEU THR ASN TRP TYR ILE ARG PHE ASN ARG ARG ARG SEQRES 58 A 990 LEU LYS GLY GLU ASN GLY VAL GLU ASP CYS LEU LYS ALA SEQRES 59 A 990 LEU ASN SER LEU PHE ASP ALA LEU PHE THR PHE VAL ARG SEQRES 60 A 990 ALA MET ALA PRO PHE THR PRO PHE LEU SER GLU SER ILE SEQRES 61 A 990 TYR LEU ARG LEU LYS GLU TYR ILE PRO GLU ALA VAL LEU SEQRES 62 A 990 ALA LYS TYR GLY LYS ASP GLY ARG SER VAL HIS PHE LEU SEQRES 63 A 990 SER TYR PRO VAL VAL LYS LYS GLU TYR PHE ASP GLU ALA SEQRES 64 A 990 ILE GLU THR ALA VAL SER ARG MET GLN SER VAL ILE ASP SEQRES 65 A 990 LEU GLY ARG ASN ILE ARG GLU LYS LYS THR ILE SER LEU SEQRES 66 A 990 LYS THR PRO LEU LYS THR LEU VAL ILE LEU HIS SER ASP SEQRES 67 A 990 GLU SER TYR LEU LYS ASP VAL GLU ALA LEU LYS ASN TYR SEQRES 68 A 990 ILE ILE GLU GLU LEU ASN VAL ARG ASP VAL VAL ILE THR SEQRES 69 A 990 SER ASP GLU ALA LYS TYR GLY VAL GLU TYR LYS ALA VAL SEQRES 70 A 990 ALA ASP TRP PRO VAL LEU GLY LYS LYS LEU LYS LYS ASP SEQRES 71 A 990 ALA LYS LYS VAL LYS ASP ALA LEU PRO SER VAL THR SER SEQRES 72 A 990 GLU GLN VAL ARG GLU TYR LEU GLU SER GLY LYS LEU GLU SEQRES 73 A 990 VAL ALA GLY ILE GLU LEU VAL LYS GLY ASP LEU ASN ALA SEQRES 74 A 990 ILE ARG GLY LEU PRO GLU SER ALA VAL GLN ALA GLY GLN SEQRES 75 A 990 GLU THR ARG THR ASP GLN ASP VAL LEU ILE ILE MET ASP SEQRES 76 A 990 THR ASN ILE TYR SER GLU LEU LYS SER HIS HIS HIS HIS SEQRES 77 A 990 HIS HIS HET GVU A1001 47 HET ILE A1002 9 HET EDO A1003 4 HET EDO A1004 4 HETNAM GVU (2E,4S,5S,6E,8E)-10-[(2S,3R,6S,8R,9S)-3-BUTYL-9-METHYL- HETNAM 2 GVU 2-[(1E,3E)-3-METHYL-5-OXIDANYL-5-OXIDANYLIDENE-PENTA- HETNAM 3 GVU 1,3-DIENYL]-3-(4-OXIDANYL-4-OXIDANYLIDENE-BUTANOYL) HETNAM 4 GVU OXY-1,7-DIOXASPIRO[5.5]UNDECAN-8-YL]-4,8-DIMETHYL-5- HETNAM 5 GVU OXIDANYL-DECA-2,6,8-TRIENOIC ACID HETNAM ILE ISOLEUCINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GVU C36 H52 O11 FORMUL 3 ILE C6 H13 N O2 FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *155(H2 O) HELIX 1 AA1 SER A 9 ILE A 24 1 16 HELIX 2 AA2 ASP A 25 LYS A 35 1 11 HELIX 3 AA3 HIS A 54 THR A 74 1 21 HELIX 4 AA4 GLY A 88 LEU A 99 1 12 HELIX 5 AA5 ASP A 105 GLY A 111 1 7 HELIX 6 AA6 GLY A 111 LEU A 137 1 27 HELIX 7 AA7 TYR A 151 LYS A 168 1 18 HELIX 8 AA8 PHE A 191 GLN A 195 5 5 HELIX 9 AA9 THR A 225 ASN A 232 5 8 HELIX 10 AB1 LEU A 258 LEU A 265 5 8 HELIX 11 AB2 LYS A 268 GLU A 272 5 5 HELIX 12 AB3 GLY A 282 VAL A 286 1 5 HELIX 13 AB4 PHE A 297 HIS A 302 1 6 HELIX 14 AB5 VAL A 363 GLU A 367 5 5 HELIX 15 AB6 TYR A 370 THR A 385 1 16 HELIX 16 AB7 VAL A 420 ASN A 422 5 3 HELIX 17 AB8 ILE A 423 LYS A 433 1 11 HELIX 18 AB9 PRO A 438 LYS A 444 1 7 HELIX 19 AC1 LYS A 444 ASN A 452 1 9 HELIX 20 AC2 SER A 484 GLY A 493 1 10 HELIX 21 AC3 HIS A 501 ASP A 506 1 6 HELIX 22 AC4 ASP A 527 SER A 534 1 8 HELIX 23 AC5 SER A 534 SER A 539 1 6 HELIX 24 AC6 ASN A 546 VAL A 554 1 9 HELIX 25 AC7 ASP A 564 ARG A 567 5 4 HELIX 26 AC8 GLY A 568 GLY A 582 1 15 HELIX 27 AC9 ASP A 612 GLY A 621 1 10 HELIX 28 AD1 GLY A 621 ASN A 631 1 11 HELIX 29 AD2 SER A 632 ALA A 637 5 6 HELIX 30 AD3 LYS A 643 VAL A 654 1 12 HELIX 31 AD4 VAL A 654 MET A 675 1 22 HELIX 32 AD5 ASN A 690 GLY A 712 1 23 HELIX 33 AD6 THR A 718 TRP A 733 1 16 HELIX 34 AD7 TRP A 733 ASN A 738 1 6 HELIX 35 AD8 ASN A 738 GLY A 744 1 7 HELIX 36 AD9 VAL A 748 ALA A 770 1 23 HELIX 37 AE1 PHE A 775 LYS A 785 1 11 HELIX 38 AE2 GLU A 786 ILE A 788 5 3 HELIX 39 AE3 PRO A 789 ALA A 794 1 6 HELIX 40 AE4 LYS A 795 GLY A 797 5 3 HELIX 41 AE5 SER A 802 LEU A 806 5 5 HELIX 42 AE6 LYS A 812 PHE A 816 5 5 HELIX 43 AE7 ASP A 817 LYS A 841 1 25 HELIX 44 AE8 ASP A 858 LEU A 868 1 11 HELIX 45 AE9 LEU A 868 ASN A 877 1 10 HELIX 46 AF1 GLU A 887 GLY A 891 5 5 HELIX 47 AF2 PRO A 954 ALA A 960 1 7 SHEET 1 AA1 2 ARG A 81 TRP A 84 0 SHEET 2 AA1 2 ASP A 142 LYS A 148 1 O TYR A 147 N TRP A 84 SHEET 1 AA2 4 THR A 186 PRO A 187 0 SHEET 2 AA2 4 VAL A 171 SER A 181 -1 N SER A 181 O THR A 186 SHEET 3 AA2 4 LEU A 409 VAL A 418 -1 O ALA A 415 N GLY A 174 SHEET 4 AA2 4 PHE A 329 GLY A 330 -1 N GLY A 330 O TYR A 410 SHEET 1 AA3 4 THR A 186 PRO A 187 0 SHEET 2 AA3 4 VAL A 171 SER A 181 -1 N SER A 181 O THR A 186 SHEET 3 AA3 4 LEU A 409 VAL A 418 -1 O ALA A 415 N GLY A 174 SHEET 4 AA3 4 TRP A 456 ASN A 457 -1 O TRP A 456 N VAL A 418 SHEET 1 AA4 6 TYR A 274 LYS A 281 0 SHEET 2 AA4 6 GLU A 242 ASP A 248 -1 N LYS A 245 O VAL A 277 SHEET 3 AA4 6 ARG A 253 LEU A 257 -1 O ARG A 253 N ASP A 248 SHEET 4 AA4 6 THR A 217 THR A 223 1 N VAL A 220 O ILE A 256 SHEET 5 AA4 6 TYR A 197 ASN A 210 -1 N ILE A 207 O ALA A 221 SHEET 6 AA4 6 LEU A 388 PRO A 399 -1 O LEU A 389 N THR A 206 SHEET 1 AA5 3 ARG A 307 SER A 310 0 SHEET 2 AA5 3 SER A 234 VAL A 237 1 N LEU A 235 O ILE A 309 SHEET 3 AA5 3 VAL A 323 ASN A 325 -1 O VAL A 323 N CYS A 236 SHEET 1 AA6 3 HIS A 435 VAL A 437 0 SHEET 2 AA6 3 ASN A 588 SER A 592 1 O VAL A 589 N VAL A 437 SHEET 3 AA6 3 ILE A 559 GLY A 562 1 N ILE A 559 O ILE A 590 SHEET 1 AA7 2 SER A 459 ARG A 460 0 SHEET 2 AA7 2 VAL A 525 PHE A 526 -1 O VAL A 525 N ARG A 460 SHEET 1 AA8 3 VAL A 479 CYS A 481 0 SHEET 2 AA8 3 LEU A 470 VAL A 472 -1 N TRP A 471 O VAL A 480 SHEET 3 AA8 3 LYS A 520 ARG A 521 -1 O LYS A 520 N VAL A 472 SHEET 1 AA9 2 VAL A 595 LEU A 596 0 SHEET 2 AA9 2 LEU A 640 LYS A 641 1 O LEU A 640 N LEU A 596 SHEET 1 AB1 4 VAL A 878 THR A 884 0 SHEET 2 AB1 4 LEU A 849 LEU A 855 1 N LYS A 850 O ASP A 880 SHEET 3 AB1 4 LEU A 971 ASP A 975 -1 O ILE A 973 N VAL A 853 SHEET 4 AB1 4 GLN A 962 THR A 966 -1 N GLU A 963 O MET A 974 CISPEP 1 VAL A 437 PRO A 438 0 3.87 CISPEP 2 TYR A 542 PRO A 543 0 -4.33 CISPEP 3 VAL A 554 PRO A 555 0 -3.63 CRYST1 171.079 64.441 141.718 90.00 107.81 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005845 0.000000 0.001878 0.00000 SCALE2 0.000000 0.015518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007412 0.00000 CONECT 7190 7200 7203 CONECT 7191 7199 CONECT 7192 7193 7202 7214 CONECT 7193 7192 7197 7219 7220 CONECT 7194 7195 7198 7201 7202 CONECT 7195 7194 7196 CONECT 7196 7195 7199 CONECT 7197 7193 7198 CONECT 7198 7194 7197 CONECT 7199 7191 7196 7200 CONECT 7200 7190 7199 7201 CONECT 7201 7194 7200 CONECT 7202 7192 7194 CONECT 7203 7190 7204 CONECT 7204 7203 7205 7206 CONECT 7205 7204 7207 CONECT 7206 7204 CONECT 7207 7205 7208 CONECT 7208 7207 7209 7212 CONECT 7209 7208 7210 7213 CONECT 7210 7209 7211 CONECT 7211 7210 7228 CONECT 7212 7208 CONECT 7213 7209 CONECT 7214 7192 7215 CONECT 7215 7214 7216 CONECT 7216 7215 7217 7218 CONECT 7217 7216 7231 CONECT 7218 7216 CONECT 7219 7193 7221 CONECT 7220 7193 7224 CONECT 7221 7219 7222 CONECT 7222 7221 7223 CONECT 7223 7222 CONECT 7224 7220 7225 7227 CONECT 7225 7224 7226 CONECT 7226 7225 7234 CONECT 7227 7224 CONECT 7228 7211 7229 7230 CONECT 7229 7228 CONECT 7230 7228 CONECT 7231 7217 7232 7233 CONECT 7232 7231 CONECT 7233 7231 CONECT 7234 7226 7235 7236 CONECT 7235 7234 CONECT 7236 7234 CONECT 7246 7247 7248 CONECT 7247 7246 CONECT 7248 7246 7249 CONECT 7249 7248 CONECT 7250 7251 7252 CONECT 7251 7250 CONECT 7252 7250 7253 CONECT 7253 7252 MASTER 433 0 4 47 33 0 0 6 7389 1 55 77 END