HEADER OXIDOREDUCTASE 21-OCT-25 9X9L TITLE AN ARTIFICIALLY ENGINEERED OXIDOREDUCTASE SUITABLE FOR PROXIMITY TITLE 2 LABELING COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ASCORBATE PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.11; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: APX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS APEX2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.WEI,X.SHIMIN REVDAT 1 28-OCT-26 9X9L 0 JRNL AUTH X.SHIMIN,Q.WEI JRNL TITL STRUCTURE OF ENGINEERED THE ASCORBATE PEROXIDASE AT 2.0 JRNL TITL 2 ANGSTROMS RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 17557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 12.5700 - 4.6300 1.00 1319 145 0.1909 0.2068 REMARK 3 2 4.6300 - 3.7100 1.00 1260 136 0.1398 0.1874 REMARK 3 3 3.7000 - 3.2500 0.99 1229 135 0.1545 0.1737 REMARK 3 4 3.2500 - 2.9500 0.99 1207 130 0.1802 0.2322 REMARK 3 5 2.9500 - 2.7400 0.99 1229 125 0.1892 0.2450 REMARK 3 6 2.7400 - 2.5800 1.00 1190 141 0.1917 0.2107 REMARK 3 7 2.5800 - 2.4600 0.99 1209 132 0.1852 0.2437 REMARK 3 8 2.4600 - 2.3500 1.00 1190 142 0.1885 0.2412 REMARK 3 9 2.3500 - 2.2600 1.00 1199 130 0.1835 0.2352 REMARK 3 10 2.2600 - 2.1800 1.00 1199 134 0.1993 0.2732 REMARK 3 11 2.1800 - 2.1100 1.00 1203 138 0.1827 0.2696 REMARK 3 12 2.1100 - 2.0500 1.00 1171 133 0.1946 0.2413 REMARK 3 13 2.0500 - 2.0000 1.00 1200 131 0.1955 0.2228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.195 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.847 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2014 REMARK 3 ANGLE : 0.903 2747 REMARK 3 CHIRALITY : 0.047 280 REMARK 3 PLANARITY : 0.008 357 REMARK 3 DIHEDRAL : 9.494 270 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 19.2345 12.8035 16.5990 REMARK 3 T TENSOR REMARK 3 T11: 0.0711 T22: 0.0543 REMARK 3 T33: 0.0456 T12: 0.0117 REMARK 3 T13: -0.0021 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.8946 L22: 0.8392 REMARK 3 L33: 0.5203 L12: -0.1228 REMARK 3 L13: 0.1228 L23: -0.1358 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: -0.0311 S13: -0.0026 REMARK 3 S21: 0.0569 S22: -0.0153 S23: -0.0348 REMARK 3 S31: -0.0227 S32: 0.0115 S33: 0.0139 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9X9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 26-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1300064816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17557 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 12.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, MAGNESIUM SULFATE HEPTAHYDRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.83250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.83250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.53500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.83250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.83250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.53500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.83250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.83250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.53500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.83250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.83250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.53500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -205.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 554 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 250 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 163 N CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 72 O HOH A 401 1.97 REMARK 500 N LYS A 3 O HOH A 402 1.98 REMARK 500 O HOH A 568 O HOH A 570 2.02 REMARK 500 O HOH A 410 O HOH A 570 2.04 REMARK 500 O HOH A 405 O HOH A 418 2.11 REMARK 500 O HOH A 570 O HOH A 600 2.12 REMARK 500 O HOH A 418 O HOH A 561 2.12 REMARK 500 O HOH A 545 O HOH A 584 2.12 REMARK 500 O HOH A 562 O HOH A 580 2.16 REMARK 500 O HOH A 577 O HOH A 602 2.18 REMARK 500 O HOH A 401 O HOH A 578 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 SO4 A 304 O HOH A 457 6555 2.02 REMARK 500 O HOH A 570 O HOH A 582 6455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 172 -71.37 -103.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 606 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 607 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 608 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 609 DISTANCE = 8.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 163 NE2 REMARK 620 2 HEM A 301 NA 93.4 REMARK 620 3 HEM A 301 NB 92.2 88.4 REMARK 620 4 HEM A 301 NC 94.4 172.2 91.2 REMARK 620 5 HEM A 301 ND 99.9 88.9 167.7 89.9 REMARK 620 6 HOH A 421 O 168.1 85.2 76.0 87.1 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SO4 A 304 O1 REMARK 620 2 SO4 A 304 O3 61.6 REMARK 620 3 HOH A 419 O 157.7 105.9 REMARK 620 4 HOH A 457 O 43.3 54.9 114.5 REMARK 620 N 1 2 3 DBREF 9X9L A 1 250 UNP Q43758 Q43758_SOYBN 1 250 SEQADV 9X9L ASP A 14 UNP Q43758 LYS 14 CONFLICT SEQADV 9X9L PHE A 41 UNP Q43758 TRP 41 CONFLICT SEQADV 9X9L LYS A 112 UNP Q43758 GLU 112 CONFLICT SEQADV 9X9L PRO A 134 UNP Q43758 ALA 134 CONFLICT SEQRES 1 A 250 MET GLY LYS SER TYR PRO THR VAL SER ALA ASP TYR GLN SEQRES 2 A 250 ASP ALA VAL GLU LYS ALA LYS LYS LYS LEU ARG GLY PHE SEQRES 3 A 250 ILE ALA GLU LYS ARG CYS ALA PRO LEU MET LEU ARG LEU SEQRES 4 A 250 ALA PHE HIS SER ALA GLY THR PHE ASP LYS GLY THR LYS SEQRES 5 A 250 THR GLY GLY PRO PHE GLY THR ILE LYS HIS PRO ALA GLU SEQRES 6 A 250 LEU ALA HIS SER ALA ASN ASN GLY LEU ASP ILE ALA VAL SEQRES 7 A 250 ARG LEU LEU GLU PRO LEU LYS ALA GLU PHE PRO ILE LEU SEQRES 8 A 250 SER TYR ALA ASP PHE TYR GLN LEU ALA GLY VAL VAL ALA SEQRES 9 A 250 VAL GLU VAL THR GLY GLY PRO LYS VAL PRO PHE HIS PRO SEQRES 10 A 250 GLY ARG GLU ASP LYS PRO GLU PRO PRO PRO GLU GLY ARG SEQRES 11 A 250 LEU PRO ASP PRO THR LYS GLY SER ASP HIS LEU ARG ASP SEQRES 12 A 250 VAL PHE GLY LYS ALA MET GLY LEU THR ASP GLN ASP ILE SEQRES 13 A 250 VAL ALA LEU SER GLY GLY HIS THR ILE GLY ALA ALA HIS SEQRES 14 A 250 LYS GLU ARG SER GLY PHE GLU GLY PRO TRP THR SER ASN SEQRES 15 A 250 PRO LEU ILE PHE ASP ASN SER TYR PHE THR GLU LEU LEU SEQRES 16 A 250 SER GLY GLU LYS GLU GLY LEU LEU GLN LEU PRO SER ASP SEQRES 17 A 250 LYS ALA LEU LEU SER ASP PRO VAL PHE ARG PRO LEU VAL SEQRES 18 A 250 ASP LYS TYR ALA ALA ASP GLU ASP ALA PHE PHE ALA ASP SEQRES 19 A 250 TYR ALA GLU ALA HIS GLN LYS LEU SER GLU LEU GLY PHE SEQRES 20 A 250 ALA ASP ALA HET HEM A 301 73 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET MG A 307 1 HET MG A 308 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 MG 2(MG 2+) FORMUL 10 HOH *209(H2 O) HELIX 1 AA1 SER A 9 ARG A 31 1 23 HELIX 2 AA2 CYS A 32 GLY A 45 1 14 HELIX 3 AA3 GLY A 58 LYS A 61 5 4 HELIX 4 AA4 HIS A 62 ALA A 67 1 6 HELIX 5 AA5 HIS A 68 ASN A 72 5 5 HELIX 6 AA6 GLY A 73 GLU A 87 1 15 HELIX 7 AA7 SER A 92 THR A 108 1 17 HELIX 8 AA8 GLY A 137 GLY A 146 1 10 HELIX 9 AA9 THR A 152 GLY A 161 1 10 HELIX 10 AB1 GLY A 162 ILE A 165 5 4 HELIX 11 AB2 ASN A 188 GLY A 197 1 10 HELIX 12 AB3 LEU A 205 ASP A 214 1 10 HELIX 13 AB4 VAL A 216 ASP A 227 1 12 HELIX 14 AB5 ASP A 227 GLU A 244 1 18 SHEET 1 AA1 2 ALA A 167 ALA A 168 0 SHEET 2 AA1 2 GLY A 177 PRO A 178 -1 O GLY A 177 N ALA A 168 LINK ND1 HIS A 62 MG MG A 307 1555 1555 2.62 LINK NE2 HIS A 163 FE HEM A 301 1555 1555 2.22 LINK FE HEM A 301 O HOH A 421 1555 1555 2.10 LINK O1 SO4 A 304 MG MG A 308 1555 1555 1.86 LINK O3 SO4 A 304 MG MG A 308 1555 1555 2.66 LINK MG MG A 308 O HOH A 419 1555 1555 2.52 LINK MG MG A 308 O HOH A 457 1555 6555 2.92 CRYST1 81.665 81.665 75.070 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013321 0.00000 CONECT 459 1993 CONECT 1219 1937 CONECT 1895 1899 1926 1967 CONECT 1896 1902 1909 1938 CONECT 1897 1912 1916 1939 CONECT 1898 1919 1923 1940 CONECT 1899 1895 1900 1933 CONECT 1900 1899 1901 1904 CONECT 1901 1900 1902 1903 CONECT 1902 1896 1901 1933 CONECT 1903 1901 1941 1942 1943 CONECT 1904 1900 1905 1944 1945 CONECT 1905 1904 1906 1946 1947 CONECT 1906 1905 1907 1908 CONECT 1907 1906 CONECT 1908 1906 CONECT 1909 1896 1910 1934 CONECT 1910 1909 1911 1913 CONECT 1911 1910 1912 1914 CONECT 1912 1897 1911 1934 CONECT 1913 1910 1948 1949 1950 CONECT 1914 1911 1915 1951 CONECT 1915 1914 1952 1953 CONECT 1916 1897 1917 1935 CONECT 1917 1916 1918 1920 CONECT 1918 1917 1919 1921 CONECT 1919 1898 1918 1935 CONECT 1920 1917 1954 1955 1956 CONECT 1921 1918 1922 1957 CONECT 1922 1921 1958 1959 CONECT 1923 1898 1924 1936 CONECT 1924 1923 1925 1927 CONECT 1925 1924 1926 1928 CONECT 1926 1895 1925 1936 CONECT 1927 1924 1960 1961 1962 CONECT 1928 1925 1929 1963 1964 CONECT 1929 1928 1930 1965 1966 CONECT 1930 1929 1931 1932 CONECT 1931 1930 CONECT 1932 1930 CONECT 1933 1899 1902 1937 CONECT 1934 1909 1912 1937 CONECT 1935 1916 1919 1937 CONECT 1936 1923 1926 1937 CONECT 1937 1219 1933 1934 1935 CONECT 1937 1936 2015 CONECT 1938 1896 CONECT 1939 1897 CONECT 1940 1898 CONECT 1941 1903 CONECT 1942 1903 CONECT 1943 1903 CONECT 1944 1904 CONECT 1945 1904 CONECT 1946 1905 CONECT 1947 1905 CONECT 1948 1913 CONECT 1949 1913 CONECT 1950 1913 CONECT 1951 1914 CONECT 1952 1915 CONECT 1953 1915 CONECT 1954 1920 CONECT 1955 1920 CONECT 1956 1920 CONECT 1957 1921 CONECT 1958 1922 CONECT 1959 1922 CONECT 1960 1927 CONECT 1961 1927 CONECT 1962 1927 CONECT 1963 1928 CONECT 1964 1928 CONECT 1965 1929 CONECT 1966 1929 CONECT 1967 1895 CONECT 1968 1969 1970 1971 1972 CONECT 1969 1968 CONECT 1970 1968 CONECT 1971 1968 CONECT 1972 1968 CONECT 1973 1974 1975 1976 1977 CONECT 1974 1973 CONECT 1975 1973 CONECT 1976 1973 CONECT 1977 1973 CONECT 1978 1979 1980 1981 1982 CONECT 1979 1978 1994 CONECT 1980 1978 CONECT 1981 1978 1994 CONECT 1982 1978 CONECT 1983 1984 1985 1986 1987 CONECT 1984 1983 CONECT 1985 1983 CONECT 1986 1983 CONECT 1987 1983 CONECT 1988 1989 1990 1991 1992 CONECT 1989 1988 CONECT 1990 1988 CONECT 1991 1988 CONECT 1992 1988 CONECT 1993 459 CONECT 1994 1979 1981 2013 CONECT 2013 1994 CONECT 2015 1937 MASTER 362 0 8 14 2 0 0 6 2172 1 105 20 END