data_9X9O # _entry.id 9X9O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9X9O pdb_00009x9o 10.2210/pdb9x9o/pdb WWPDB D_1300064934 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-10-28 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9X9O _pdbx_database_status.recvd_initial_deposition_date 2025-10-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email aimingren@zju.edu.cn _pdbx_contact_author.name_first Ren _pdbx_contact_author.name_last Aiming _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5420-4899 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tai, X.Q.' 1 ? 'Ren, A.M.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of apo-state RhoBAST' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tai, X.Q.' 1 ? primary 'Ren, A.M.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (57-MER)' 18574.088 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 15 ? ? ? ? 3 water nat water 18.015 55 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GDP)GAACCUCCGCCGAAAGGCGGUGAAGGAGAGGCGCAAGGUUAACCGCCUCAGGUUCC' _entity_poly.pdbx_seq_one_letter_code_can GGAACCUCCGCCGAAAGGCGGUGAAGGAGAGGCGCAAGGUUAACCGCCUCAGGUUCC _entity_poly.pdbx_strand_id U,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GDP n 1 2 G n 1 3 A n 1 4 A n 1 5 C n 1 6 C n 1 7 U n 1 8 C n 1 9 C n 1 10 G n 1 11 C n 1 12 C n 1 13 G n 1 14 A n 1 15 A n 1 16 A n 1 17 G n 1 18 G n 1 19 C n 1 20 G n 1 21 G n 1 22 U n 1 23 G n 1 24 A n 1 25 A n 1 26 G n 1 27 G n 1 28 A n 1 29 G n 1 30 A n 1 31 G n 1 32 G n 1 33 C n 1 34 G n 1 35 C n 1 36 A n 1 37 A n 1 38 G n 1 39 G n 1 40 U n 1 41 U n 1 42 A n 1 43 A n 1 44 C n 1 45 C n 1 46 G n 1 47 C n 1 48 C n 1 49 U n 1 50 C n 1 51 A n 1 52 G n 1 53 G n 1 54 U n 1 55 U n 1 56 C n 1 57 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 57 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GDP 1 1 1 GDP GDP U . n A 1 2 G 2 2 2 G G U . n A 1 3 A 3 3 3 A A U . n A 1 4 A 4 4 4 A A U . n A 1 5 C 5 5 5 C C U . n A 1 6 C 6 6 6 C C U . n A 1 7 U 7 7 7 U U U . n A 1 8 C 8 8 8 C C U . n A 1 9 C 9 9 9 C C U . n A 1 10 G 10 10 10 G G U . n A 1 11 C 11 11 11 C C U . n A 1 12 C 12 12 12 C C U . n A 1 13 G 13 13 13 G G U . n A 1 14 A 14 14 14 A A U . n A 1 15 A 15 15 15 A A U . n A 1 16 A 16 16 16 A A U . n A 1 17 G 17 17 17 G G U . n A 1 18 G 18 18 18 G G U . n A 1 19 C 19 19 19 C C U . n A 1 20 G 20 20 20 G G U . n A 1 21 G 21 21 21 G G U . n A 1 22 U 22 22 22 U U U . n A 1 23 G 23 23 23 G G U . n A 1 24 A 24 24 24 A A U . n A 1 25 A 25 25 25 A A U . n A 1 26 G 26 26 26 G G U . n A 1 27 G 27 27 27 G G U . n A 1 28 A 28 28 28 A A U . n A 1 29 G 29 29 29 G G U . n A 1 30 A 30 30 30 A A U . n A 1 31 G 31 31 31 G G U . n A 1 32 G 32 32 32 G G U . n A 1 33 C 33 33 33 C C U . n A 1 34 G 34 34 34 G G U . n A 1 35 C 35 35 35 C C U . n A 1 36 A 36 36 36 A A U . n A 1 37 A 37 37 37 A A U . n A 1 38 G 38 38 38 G G U . n A 1 39 G 39 39 39 G G U . n A 1 40 U 40 40 40 U U U . n A 1 41 U 41 41 41 U U U . n A 1 42 A 42 42 42 A A U . n A 1 43 A 43 43 43 A A U . n A 1 44 C 44 44 44 C C U . n A 1 45 C 45 45 45 C C U . n A 1 46 G 46 46 46 G G U . n A 1 47 C 47 47 47 C C U . n A 1 48 C 48 48 48 C C U . n A 1 49 U 49 49 49 U U U . n A 1 50 C 50 50 50 C C U . n A 1 51 A 51 51 51 A A U . n A 1 52 G 52 52 52 G G U . n A 1 53 G 53 53 53 G G U . n A 1 54 U 54 54 54 U U U . n A 1 55 U 55 55 55 U U U . n A 1 56 C 56 56 56 C C U . n A 1 57 C 57 57 57 C C U . n B 1 1 GDP 1 1 1 GDP GDP B . n B 1 2 G 2 2 2 G G B . n B 1 3 A 3 3 3 A A B . n B 1 4 A 4 4 4 A A B . n B 1 5 C 5 5 5 C C B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 C 8 8 8 C C B . n B 1 9 C 9 9 9 C C B . n B 1 10 G 10 10 10 G G B . n B 1 11 C 11 11 11 C C B . n B 1 12 C 12 12 12 C C B . n B 1 13 G 13 13 13 G G B . n B 1 14 A 14 14 14 A A B . n B 1 15 A 15 15 15 A A B . n B 1 16 A 16 16 16 A A B . n B 1 17 G 17 17 17 G G B . n B 1 18 G 18 18 18 G G B . n B 1 19 C 19 19 19 C C B . n B 1 20 G 20 20 20 G G B . n B 1 21 G 21 21 21 G G B . n B 1 22 U 22 22 22 U U B . n B 1 23 G 23 23 23 G G B . n B 1 24 A 24 24 24 A A B . n B 1 25 A 25 25 25 A A B . n B 1 26 G 26 26 26 G G B . n B 1 27 G 27 27 27 G G B . n B 1 28 A 28 28 28 A A B . n B 1 29 G 29 29 29 G G B . n B 1 30 A 30 30 30 A A B . n B 1 31 G 31 31 31 G G B . n B 1 32 G 32 32 32 G G B . n B 1 33 C 33 33 33 C C B . n B 1 34 G 34 34 34 G G B . n B 1 35 C 35 35 35 C C B . n B 1 36 A 36 36 36 A A B . n B 1 37 A 37 37 37 A A B . n B 1 38 G 38 38 38 G G B . n B 1 39 G 39 39 39 G G B . n B 1 40 U 40 40 40 U U B . n B 1 41 U 41 41 41 U U B . n B 1 42 A 42 42 42 A A B . n B 1 43 A 43 43 43 A A B . n B 1 44 C 44 44 44 C C B . n B 1 45 C 45 45 45 C C B . n B 1 46 G 46 46 46 G G B . n B 1 47 C 47 47 47 C C B . n B 1 48 C 48 48 48 C C B . n B 1 49 U 49 49 49 U U B . n B 1 50 C 50 50 50 C C B . n B 1 51 A 51 51 51 A A B . n B 1 52 G 52 52 52 G G B . n B 1 53 G 53 53 53 G G B . n B 1 54 U 54 54 54 U U B . n B 1 55 U 55 55 55 U U B . n B 1 56 C 56 56 56 C C B . n B 1 57 C 57 57 57 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 1 MG MG U . D 2 MG 1 102 2 MG MG U . E 2 MG 1 103 3 MG MG U . F 2 MG 1 104 4 MG MG U . G 2 MG 1 105 5 MG MG U . H 2 MG 1 106 6 MG MG U . I 2 MG 1 107 13 MG MG U . J 2 MG 1 101 7 MG MG B . K 2 MG 1 102 8 MG MG B . L 2 MG 1 103 9 MG MG B . M 2 MG 1 104 10 MG MG B . N 2 MG 1 105 11 MG MG B . O 2 MG 1 106 12 MG MG B . P 2 MG 1 107 14 MG MG B . Q 2 MG 1 108 15 MG MG B . R 3 HOH 1 201 13 HOH HOH U . R 3 HOH 2 202 3 HOH HOH U . R 3 HOH 3 203 26 HOH HOH U . R 3 HOH 4 204 18 HOH HOH U . R 3 HOH 5 205 12 HOH HOH U . R 3 HOH 6 206 16 HOH HOH U . R 3 HOH 7 207 19 HOH HOH U . R 3 HOH 8 208 6 HOH HOH U . R 3 HOH 9 209 7 HOH HOH U . R 3 HOH 10 210 15 HOH HOH U . R 3 HOH 11 211 11 HOH HOH U . R 3 HOH 12 212 20 HOH HOH U . R 3 HOH 13 213 9 HOH HOH U . R 3 HOH 14 214 22 HOH HOH U . R 3 HOH 15 215 8 HOH HOH U . R 3 HOH 16 216 57 HOH HOH U . R 3 HOH 17 217 17 HOH HOH U . R 3 HOH 18 218 23 HOH HOH U . R 3 HOH 19 219 21 HOH HOH U . R 3 HOH 20 220 5 HOH HOH U . R 3 HOH 21 221 10 HOH HOH U . R 3 HOH 22 222 56 HOH HOH U . R 3 HOH 23 223 4 HOH HOH U . R 3 HOH 24 224 14 HOH HOH U . R 3 HOH 25 225 24 HOH HOH U . R 3 HOH 26 226 25 HOH HOH U . S 3 HOH 1 201 36 HOH HOH B . S 3 HOH 2 202 42 HOH HOH B . S 3 HOH 3 203 40 HOH HOH B . S 3 HOH 4 204 41 HOH HOH B . S 3 HOH 5 205 30 HOH HOH B . S 3 HOH 6 206 34 HOH HOH B . S 3 HOH 7 207 52 HOH HOH B . S 3 HOH 8 208 51 HOH HOH B . S 3 HOH 9 209 31 HOH HOH B . S 3 HOH 10 210 39 HOH HOH B . S 3 HOH 11 211 38 HOH HOH B . S 3 HOH 12 212 35 HOH HOH B . S 3 HOH 13 213 46 HOH HOH B . S 3 HOH 14 214 53 HOH HOH B . S 3 HOH 15 215 47 HOH HOH B . S 3 HOH 16 216 50 HOH HOH B . S 3 HOH 17 217 49 HOH HOH B . S 3 HOH 18 218 37 HOH HOH B . S 3 HOH 19 219 33 HOH HOH B . S 3 HOH 20 220 55 HOH HOH B . S 3 HOH 21 221 48 HOH HOH B . S 3 HOH 22 222 43 HOH HOH B . S 3 HOH 23 223 29 HOH HOH B . S 3 HOH 24 224 45 HOH HOH B . S 3 HOH 25 225 54 HOH HOH B . S 3 HOH 26 226 32 HOH HOH B . S 3 HOH 27 227 27 HOH HOH B . S 3 HOH 28 228 28 HOH HOH B . S 3 HOH 29 229 44 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' ? 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . ? 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . ? 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 9X9O _cell.details ? _cell.formula_units_Z ? _cell.length_a 83.280 _cell.length_a_esd ? _cell.length_b 83.280 _cell.length_b_esd ? _cell.length_c 102.736 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9X9O _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9X9O _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.77 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Sodium chloride, Na/K phosphate pH 6.2, PEG 400' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 289 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-04-13 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.10067 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.10067 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9X9O _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.53 _reflns.d_resolution_low 50.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13555 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 7.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.802 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.100 _reflns.pdbx_Rpim_I_all 0.023 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 270312 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.981 _reflns.pdbx_CC_star 0.995 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.097 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.53 2.57 ? ? ? ? ? ? 662 ? ? ? ? ? ? ? ? ? ? ? ? 0.622 ? ? 0.717 0.159 ? 1 1 0.944 0.986 ? 100.0 ? 0.699 ? ? ? ? ? ? ? ? ? 2.57 2.62 ? ? ? ? ? ? 671 ? ? ? ? ? ? ? ? ? ? ? ? 0.706 ? ? 0.580 0.130 ? 2 1 0.956 0.989 ? 100.0 ? 0.565 ? ? ? ? ? ? ? ? ? 2.62 2.67 ? ? ? ? ? ? 673 ? ? ? ? ? ? ? ? ? ? ? ? 1.091 ? ? 0.625 0.145 ? 3 1 0.922 0.979 ? 100.0 ? 0.608 ? ? ? ? ? ? ? ? ? 2.67 2.73 ? ? ? ? ? ? 680 ? ? ? ? ? ? ? ? ? ? ? ? 0.941 ? ? 0.559 0.133 ? 4 1 0.959 0.989 ? 100.0 ? 0.543 ? ? ? ? ? ? ? ? ? 2.73 2.78 ? ? ? ? ? ? 670 ? ? ? ? ? ? ? ? ? ? ? ? 0.808 ? ? 0.394 0.088 ? 5 1 0.970 0.992 ? 100.0 ? 0.384 ? ? ? ? ? ? ? ? ? 2.78 2.85 ? ? ? ? ? ? 672 ? ? ? ? ? ? ? ? ? ? ? ? 0.982 ? ? 0.336 0.073 ? 6 1 0.983 0.996 ? 100.0 ? 0.328 ? ? ? ? ? ? ? ? ? 2.85 2.92 ? ? ? ? ? ? 668 ? ? ? ? ? ? ? ? ? ? ? ? 1.165 ? ? 0.257 0.056 ? 7 1 0.989 0.997 ? 100.0 ? 0.250 ? ? ? ? ? ? ? ? ? 2.92 3.00 ? ? ? ? ? ? 690 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? ? 0.210 0.046 ? 8 1 0.993 0.998 ? 100.0 ? 0.205 ? ? ? ? ? ? ? ? ? 3.00 3.09 ? ? ? ? ? ? 675 ? ? ? ? ? ? ? ? ? ? ? 20.7 1.724 ? ? 0.176 0.039 ? 9 1 0.996 0.999 ? 100.0 ? 0.172 ? ? ? ? ? ? ? ? ? 3.09 3.19 ? ? ? ? ? ? 666 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? ? 0.151 0.034 ? 10 1 0.997 0.999 ? 100.0 ? 0.148 ? ? ? ? ? ? ? ? ? 3.19 3.30 ? ? ? ? ? ? 677 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? ? 0.154 0.035 ? 11 1 0.996 0.999 ? 100.0 ? 0.150 ? ? ? ? ? ? ? ? ? 3.30 3.43 ? ? ? ? ? ? 678 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? ? 0.132 0.030 ? 12 1 0.997 0.999 ? 100.0 ? 0.128 ? ? ? ? ? ? ? ? ? 3.43 3.59 ? ? ? ? ? ? 683 ? ? ? ? ? ? ? ? ? ? ? ? 2.900 ? ? 0.134 0.032 ? 13 1 0.996 0.999 ? 100.0 ? 0.130 ? ? ? ? ? ? ? ? ? 3.59 3.78 ? ? ? ? ? ? 682 ? ? ? ? ? ? ? ? ? ? ? ? 2.910 ? ? 0.124 0.027 ? 14 1 0.997 0.999 ? 100.0 ? 0.121 ? ? ? ? ? ? ? ? ? 3.78 4.02 ? ? ? ? ? ? 668 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? ? 0.114 0.025 ? 15 1 0.998 0.999 ? 100.0 ? 0.111 ? ? ? ? ? ? ? ? ? 4.02 4.33 ? ? ? ? ? ? 674 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? ? 0.101 0.022 ? 16 1 0.998 0.999 ? 100.0 ? 0.098 ? ? ? ? ? ? ? ? ? 4.33 4.76 ? ? ? ? ? ? 690 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? ? 0.091 0.020 ? 17 1 0.998 0.999 ? 100.0 ? 0.089 ? ? ? ? ? ? ? ? ? 4.76 5.45 ? ? ? ? ? ? 680 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? ? 0.080 0.018 ? 18 1 0.998 1.000 ? 100.0 ? 0.077 ? ? ? ? ? ? ? ? ? 5.45 6.86 ? ? ? ? ? ? 691 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? ? 0.070 0.015 ? 19 1 0.999 1.000 ? 99.9 ? 0.068 ? ? ? ? ? ? ? ? ? 6.86 50.00 ? ? ? ? ? ? 705 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? ? 0.063 0.015 ? 20 1 0.999 1.000 ? 100.0 ? 0.061 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9X9O _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.53 _refine.ls_d_res_low 41.84 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13450 _refine.ls_number_reflns_R_free 1351 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.18 _refine.ls_percent_reflns_R_free 10.04 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2091 _refine.ls_R_factor_R_free 0.2417 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2056 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 33.98 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.53 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2466 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 55 _refine_hist.number_atoms_total 2536 _refine_hist.d_res_high 2.53 _refine_hist.d_res_low 41.84 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 2758 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.078 ? 4300 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 14.519 ? 1360 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.044 ? 568 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 114 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.53 2.62 . . 130 1156 96.00 . . . . 0.3793 . . . . . . . . . . . . . . . 0.4391 'X-RAY DIFFRACTION' 2.62 2.72 . . 134 1198 99.00 . . . . 0.3932 . . . . . . . . . . . . . . . 0.4914 'X-RAY DIFFRACTION' 2.72 2.85 . . 137 1195 99.00 . . . . 0.3753 . . . . . . . . . . . . . . . 0.4080 'X-RAY DIFFRACTION' 2.85 3.00 . . 136 1222 99.00 . . . . 0.2809 . . . . . . . . . . . . . . . 0.4296 'X-RAY DIFFRACTION' 3.00 3.19 . . 136 1198 100.00 . . . . 0.2639 . . . . . . . . . . . . . . . 0.3077 'X-RAY DIFFRACTION' 3.19 3.43 . . 134 1224 100.00 . . . . 0.1926 . . . . . . . . . . . . . . . 0.2341 'X-RAY DIFFRACTION' 3.43 3.78 . . 136 1224 100.00 . . . . 0.1943 . . . . . . . . . . . . . . . 0.2060 'X-RAY DIFFRACTION' 3.78 4.32 . . 134 1214 100.00 . . . . 0.1684 . . . . . . . . . . . . . . . 0.1908 'X-RAY DIFFRACTION' 4.32 5.44 . . 135 1222 100.00 . . . . 0.1691 . . . . . . . . . . . . . . . 0.2231 'X-RAY DIFFRACTION' 5.44 41.84 . . 139 1246 99.00 . . . . 0.1728 . . . . . . . . . . . . . . . 0.1875 # _struct.entry_id 9X9O _struct.title 'Crystal structure of apo-state RhoBAST' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9X9O _struct_keywords.text 'aptamer, RhoBAST, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 3 ? S N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9X9O _struct_ref.pdbx_db_accession 9X9O _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9X9O U 1 ? 57 ? 9X9O 1 ? 57 ? 1 57 2 1 9X9O B 1 ? 57 ? 9X9O 1 ? 57 ? 1 57 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2050 ? 1 MORE -90 ? 1 'SSA (A^2)' 19710 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 B,J,K,L,M,N,O,P,Q,S 1 2 A,C,D,E,F,G,H,I,R # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z+1/2 -1.0000000000 0.0000000000 0.0000000000 83.2800000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 51.3680000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GDP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? U GDP 1 U G 2 1_555 ? ? ? ? ? ? ? 1.563 ? ? covale2 covale both ? B GDP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GDP 1 B G 2 1_555 ? ? ? ? ? ? ? 1.567 ? ? metalc1 metalc ? ? A A 25 N7 ? ? ? 1_555 O MG . MG ? ? U A 25 B MG 106 1_555 ? ? ? ? ? ? ? 2.769 ? ? metalc2 metalc ? ? A G 26 O6 ? ? ? 1_555 C MG . MG ? ? U G 26 U MG 101 1_555 ? ? ? ? ? ? ? 2.666 ? ? metalc3 metalc ? ? A G 26 OP1 ? ? ? 1_555 E MG . MG ? ? U G 26 U MG 103 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc4 metalc ? ? A G 38 OP2 ? ? ? 1_555 I MG . MG ? ? U G 38 U MG 107 1_555 ? ? ? ? ? ? ? 2.611 ? ? metalc5 metalc ? ? R HOH . O ? ? ? 4_655 Q MG . MG ? ? U HOH 216 B MG 108 1_555 ? ? ? ? ? ? ? 2.887 ? ? metalc6 metalc ? ? B G 26 O6 ? ? ? 1_555 L MG . MG ? ? B G 26 B MG 103 1_555 ? ? ? ? ? ? ? 2.928 ? ? metalc7 metalc ? ? B G 38 OP2 ? ? ? 1_555 P MG . MG ? ? B G 38 B MG 107 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc8 metalc ? ? B A 51 "O2'" ? ? ? 1_555 O MG . MG ? ? B A 51 B MG 106 1_555 ? ? ? ? ? ? ? 2.471 ? ? metalc9 metalc ? ? B G 52 "O4'" ? ? ? 1_555 O MG . MG ? ? B G 52 B MG 106 1_555 ? ? ? ? ? ? ? 2.617 ? ? metalc10 metalc ? ? Q MG . MG ? ? ? 1_555 S HOH . O ? ? B MG 108 B HOH 220 1_555 ? ? ? ? ? ? ? 2.861 ? ? hydrog1 hydrog ? ? B GDP 1 N1 ? ? ? 1_555 B C 57 N3 ? ? B GDP 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B GDP 1 N2 ? ? ? 1_555 B C 57 O2 ? ? B GDP 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B GDP 1 O6 ? ? ? 1_555 B C 57 N4 ? ? B GDP 1 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 56 N3 ? ? B G 2 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 56 O2 ? ? B G 2 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 56 N4 ? ? B G 2 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 55 N3 ? ? B A 3 B U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 55 O4 ? ? B A 3 B U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 54 N3 ? ? B A 4 B U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 54 O4 ? ? B A 4 B U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 53 N1 ? ? B C 5 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 53 O6 ? ? B C 5 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 53 N2 ? ? B C 5 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 52 N1 ? ? B C 6 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 52 O6 ? ? B C 6 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 52 N2 ? ? B C 6 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 51 N1 ? ? B U 7 B A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 51 N6 ? ? B U 7 B A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 21 N1 ? ? B C 8 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 21 O6 ? ? B C 8 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 21 N2 ? ? B C 8 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B C 9 N3 ? ? ? 1_555 B G 20 N1 ? ? B C 9 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B C 9 N4 ? ? ? 1_555 B G 20 O6 ? ? B C 9 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B C 9 O2 ? ? ? 1_555 B G 20 N2 ? ? B C 9 B G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 19 N3 ? ? B G 10 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 19 O2 ? ? B G 10 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 19 N4 ? ? B G 10 B C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B C 11 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 11 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 11 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 11 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 11 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 11 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 17 N1 ? ? B C 12 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 17 O6 ? ? B C 12 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 17 N2 ? ? B C 12 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B G 13 N2 ? ? ? 1_555 B A 16 N7 ? ? B G 13 B A 16 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog35 hydrog ? ? B U 22 N3 ? ? ? 1_555 B A 28 N1 ? ? B U 22 B A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B U 22 O4 ? ? ? 1_555 B A 28 N6 ? ? B U 22 B A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B G 23 N1 ? ? ? 1_555 B C 44 N3 ? ? B G 23 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 23 N2 ? ? ? 1_555 B C 44 O2 ? ? B G 23 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 23 O6 ? ? ? 1_555 B C 44 N4 ? ? B G 23 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B A 24 N1 ? ? ? 1_555 B A 42 N6 ? ? B A 24 B A 42 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog41 hydrog ? ? B A 24 N6 ? ? ? 1_555 B A 42 N7 ? ? B A 24 B A 42 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog42 hydrog ? ? B G 26 N2 ? ? ? 1_555 B A 43 N7 ? ? B G 26 B A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog43 hydrog ? ? B G 26 N3 ? ? ? 1_555 B A 43 N6 ? ? B G 26 B A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog44 hydrog ? ? B G 27 N1 ? ? ? 1_555 B C 35 N3 ? ? B G 27 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 27 N2 ? ? ? 1_555 B C 35 O2 ? ? B G 27 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 27 O6 ? ? ? 1_555 B C 35 N4 ? ? B G 27 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 29 N1 ? ? ? 1_555 B C 50 N3 ? ? B G 29 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 29 N2 ? ? ? 1_555 B C 50 O2 ? ? B G 29 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 29 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 29 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B A 30 N1 ? ? ? 1_555 B U 49 N3 ? ? B A 30 B U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B A 30 N6 ? ? ? 1_555 B U 49 O4 ? ? B A 30 B U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 31 N1 ? ? ? 1_555 B C 48 N3 ? ? B G 31 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 31 N2 ? ? ? 1_555 B C 48 O2 ? ? B G 31 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 31 O6 ? ? ? 1_555 B C 48 N4 ? ? B G 31 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 47 N3 ? ? B G 32 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 47 O2 ? ? B G 32 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 47 N4 ? ? B G 32 B C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 33 N3 ? ? ? 1_555 B G 46 N1 ? ? B C 33 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 33 N4 ? ? ? 1_555 B G 46 O6 ? ? B C 33 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 33 O2 ? ? ? 1_555 B G 46 N2 ? ? B C 33 B G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B G 34 N1 ? ? ? 1_555 B C 45 N3 ? ? B G 34 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B G 34 N2 ? ? ? 1_555 B C 45 O2 ? ? B G 34 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 34 O6 ? ? ? 1_555 B C 45 N4 ? ? B G 34 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A GDP 1 N1 ? ? ? 1_555 A C 57 N3 ? ? U GDP 1 U C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A GDP 1 N2 ? ? ? 1_555 A C 57 O2 ? ? U GDP 1 U C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A GDP 1 O6 ? ? ? 1_555 A C 57 N4 ? ? U GDP 1 U C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 56 N3 ? ? U G 2 U C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 56 O2 ? ? U G 2 U C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 56 N4 ? ? U G 2 U C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 55 N3 ? ? U A 3 U U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 55 O4 ? ? U A 3 U U 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 54 N3 ? ? U A 4 U U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 54 O4 ? ? U A 4 U U 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 53 N1 ? ? U C 5 U G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 53 O6 ? ? U C 5 U G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 53 N2 ? ? U C 5 U G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 52 N1 ? ? U C 6 U G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 52 O6 ? ? U C 6 U G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 52 N2 ? ? U C 6 U G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 51 N1 ? ? U U 7 U A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 51 N6 ? ? U U 7 U A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 21 N1 ? ? U C 8 U G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 21 O6 ? ? U C 8 U G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 21 N2 ? ? U C 8 U G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 20 N1 ? ? U C 9 U G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 20 O6 ? ? U C 9 U G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 20 N2 ? ? U C 9 U G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 19 N3 ? ? U G 10 U C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 19 O2 ? ? U G 10 U C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 19 N4 ? ? U G 10 U C 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 18 N1 ? ? U C 11 U G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 18 O6 ? ? U C 11 U G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 18 N2 ? ? U C 11 U G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 17 N1 ? ? U C 12 U G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 17 O6 ? ? U C 12 U G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 17 N2 ? ? U C 12 U G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 13 N2 ? ? ? 1_555 A A 16 N7 ? ? U G 13 U A 16 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog98 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 28 N1 ? ? U U 22 U A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 28 N6 ? ? U U 22 U A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 44 N3 ? ? U G 23 U C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 44 O2 ? ? U G 23 U C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 44 N4 ? ? U G 23 U C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A A 24 N1 ? ? ? 1_555 A A 42 N6 ? ? U A 24 U A 42 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog104 hydrog ? ? A A 24 N6 ? ? ? 1_555 A A 42 N7 ? ? U A 24 U A 42 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog105 hydrog ? ? A A 25 N6 ? ? ? 1_555 B G 29 N3 ? ? U A 25 B G 29 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog106 hydrog ? ? A G 26 N2 ? ? ? 1_555 A A 43 N7 ? ? U G 26 U A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog107 hydrog ? ? A G 26 N3 ? ? ? 1_555 A A 43 N6 ? ? U G 26 U A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog108 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 35 N3 ? ? U G 27 U C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 35 O2 ? ? U G 27 U C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 35 N4 ? ? U G 27 U C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A G 29 N3 ? ? ? 1_555 B A 25 N6 ? ? U G 29 B A 25 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog112 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 50 N3 ? ? U G 29 U C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 50 O2 ? ? U G 29 U C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 50 N4 ? ? U G 29 U C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A A 30 N1 ? ? ? 1_555 A U 49 N3 ? ? U A 30 U U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A A 30 N6 ? ? ? 1_555 A U 49 O4 ? ? U A 30 U U 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 48 N3 ? ? U G 31 U C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 48 O2 ? ? U G 31 U C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 48 N4 ? ? U G 31 U C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 47 N3 ? ? U G 32 U C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 47 O2 ? ? U G 32 U C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 47 N4 ? ? U G 32 U C 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 46 N1 ? ? U C 33 U G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 46 O6 ? ? U C 33 U G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 46 N2 ? ? U C 33 U G 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? A G 34 N1 ? ? ? 1_555 A C 45 N3 ? ? U G 34 U C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? A G 34 N2 ? ? ? 1_555 A C 45 O2 ? ? U G 34 U C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? A G 34 O6 ? ? ? 1_555 A C 45 N4 ? ? U G 34 U C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? A G 38 N2 ? ? ? 1_555 A U 41 O2 ? ? U G 38 U U 41 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog130 hydrog ? ? A G 39 N3 ? ? ? 1_555 A U 41 N3 ? ? U G 39 U U 41 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A A 25 ? U A 25 ? 1_555 MG ? O MG . ? B MG 106 ? 1_555 "O2'" ? B A 51 ? B A 51 ? 1_555 94.0 ? 2 N7 ? A A 25 ? U A 25 ? 1_555 MG ? O MG . ? B MG 106 ? 1_555 "O4'" ? B G 52 ? B G 52 ? 1_555 169.8 ? 3 "O2'" ? B A 51 ? B A 51 ? 1_555 MG ? O MG . ? B MG 106 ? 1_555 "O4'" ? B G 52 ? B G 52 ? 1_555 76.0 ? 4 O ? R HOH . ? U HOH 216 ? 4_655 MG ? Q MG . ? B MG 108 ? 1_555 O ? S HOH . ? B HOH 220 ? 1_555 66.6 ? # _pdbx_entry_details.entry_id 9X9O _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 B C 6 ? ? O B HOH 201 ? ? 2.10 2 1 OP2 U C 6 ? ? O U HOH 201 ? ? 2.12 3 1 N3 B G 21 ? ? O B HOH 202 ? ? 2.14 4 1 O1A U GDP 1 ? ? O U HOH 202 ? ? 2.16 5 1 OP2 B C 19 ? ? O B HOH 203 ? ? 2.16 6 1 OP2 B G 21 ? ? O B HOH 204 ? ? 2.17 7 1 O1A B GDP 1 ? ? O B HOH 205 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" U GDP 1 ? ? "O3'" U GDP 1 ? ? P U G 2 ? ? 107.34 119.70 -12.36 1.20 Y 2 1 "O3'" U GDP 1 ? ? P U G 2 ? ? OP2 U G 2 ? ? 120.87 110.50 10.37 1.10 Y 3 1 "C3'" B GDP 1 ? ? "O3'" B GDP 1 ? ? P B G 2 ? ? 104.42 119.70 -15.28 1.20 Y 4 1 "O3'" B GDP 1 ? ? P B G 2 ? ? OP2 B G 2 ? ? 124.52 110.50 14.02 1.10 Y # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 41.6798 _pdbx_refine_tls.origin_y 11.5183 _pdbx_refine_tls.origin_z 10.3049 _pdbx_refine_tls.T[1][1] 0.4628 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0001 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.1341 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.4720 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0054 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.6055 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 1.0087 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.1007 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.1326 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.0153 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.0504 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.0825 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0715 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.0422 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.1667 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0042 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.0578 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0039 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.0908 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.0033 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.0122 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GDP PB P N N 111 GDP O1B O N N 112 GDP O2B O N N 113 GDP O3B O N N 114 GDP O3A O N N 115 GDP PA P N N 116 GDP O1A O N N 117 GDP O2A O N N 118 GDP "O5'" O N N 119 GDP "C5'" C N N 120 GDP "C4'" C N R 121 GDP "O4'" O N N 122 GDP "C3'" C N S 123 GDP "O3'" O N N 124 GDP "C2'" C N R 125 GDP "O2'" O N N 126 GDP "C1'" C N R 127 GDP N9 N Y N 128 GDP C8 C Y N 129 GDP N7 N Y N 130 GDP C5 C Y N 131 GDP C6 C N N 132 GDP O6 O N N 133 GDP N1 N N N 134 GDP C2 C N N 135 GDP N2 N N N 136 GDP N3 N N N 137 GDP C4 C Y N 138 GDP HOB2 H N N 139 GDP HOB3 H N N 140 GDP HOA2 H N N 141 GDP "H5'" H N N 142 GDP "H5''" H N N 143 GDP "H4'" H N N 144 GDP "H3'" H N N 145 GDP "HO3'" H N N 146 GDP "H2'" H N N 147 GDP "HO2'" H N N 148 GDP "H1'" H N N 149 GDP H8 H N N 150 GDP HN1 H N N 151 GDP HN21 H N N 152 GDP HN22 H N N 153 HOH O O N N 154 HOH H1 H N N 155 HOH H2 H N N 156 MG MG MG N N 157 U OP3 O N N 158 U P P N N 159 U OP1 O N N 160 U OP2 O N N 161 U "O5'" O N N 162 U "C5'" C N N 163 U "C4'" C N R 164 U "O4'" O N N 165 U "C3'" C N S 166 U "O3'" O N N 167 U "C2'" C N R 168 U "O2'" O N N 169 U "C1'" C N R 170 U N1 N N N 171 U C2 C N N 172 U O2 O N N 173 U N3 N N N 174 U C4 C N N 175 U O4 O N N 176 U C5 C N N 177 U C6 C N N 178 U HOP3 H N N 179 U HOP2 H N N 180 U "H5'" H N N 181 U "H5''" H N N 182 U "H4'" H N N 183 U "H3'" H N N 184 U "HO3'" H N N 185 U "H2'" H N N 186 U "HO2'" H N N 187 U "H1'" H N N 188 U H3 H N N 189 U H5 H N N 190 U H6 H N N 191 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GDP PB O1B doub N N 116 GDP PB O2B sing N N 117 GDP PB O3B sing N N 118 GDP PB O3A sing N N 119 GDP O2B HOB2 sing N N 120 GDP O3B HOB3 sing N N 121 GDP O3A PA sing N N 122 GDP PA O1A doub N N 123 GDP PA O2A sing N N 124 GDP PA "O5'" sing N N 125 GDP O2A HOA2 sing N N 126 GDP "O5'" "C5'" sing N N 127 GDP "C5'" "C4'" sing N N 128 GDP "C5'" "H5'" sing N N 129 GDP "C5'" "H5''" sing N N 130 GDP "C4'" "O4'" sing N N 131 GDP "C4'" "C3'" sing N N 132 GDP "C4'" "H4'" sing N N 133 GDP "O4'" "C1'" sing N N 134 GDP "C3'" "O3'" sing N N 135 GDP "C3'" "C2'" sing N N 136 GDP "C3'" "H3'" sing N N 137 GDP "O3'" "HO3'" sing N N 138 GDP "C2'" "O2'" sing N N 139 GDP "C2'" "C1'" sing N N 140 GDP "C2'" "H2'" sing N N 141 GDP "O2'" "HO2'" sing N N 142 GDP "C1'" N9 sing N N 143 GDP "C1'" "H1'" sing N N 144 GDP N9 C8 sing Y N 145 GDP N9 C4 sing Y N 146 GDP C8 N7 doub Y N 147 GDP C8 H8 sing N N 148 GDP N7 C5 sing Y N 149 GDP C5 C6 sing N N 150 GDP C5 C4 doub Y N 151 GDP C6 O6 doub N N 152 GDP C6 N1 sing N N 153 GDP N1 C2 sing N N 154 GDP N1 HN1 sing N N 155 GDP C2 N2 sing N N 156 GDP C2 N3 doub N N 157 GDP N2 HN21 sing N N 158 GDP N2 HN22 sing N N 159 GDP N3 C4 sing N N 160 HOH O H1 sing N N 161 HOH O H2 sing N N 162 U OP3 P sing N N 163 U OP3 HOP3 sing N N 164 U P OP1 doub N N 165 U P OP2 sing N N 166 U P "O5'" sing N N 167 U OP2 HOP2 sing N N 168 U "O5'" "C5'" sing N N 169 U "C5'" "C4'" sing N N 170 U "C5'" "H5'" sing N N 171 U "C5'" "H5''" sing N N 172 U "C4'" "O4'" sing N N 173 U "C4'" "C3'" sing N N 174 U "C4'" "H4'" sing N N 175 U "O4'" "C1'" sing N N 176 U "C3'" "O3'" sing N N 177 U "C3'" "C2'" sing N N 178 U "C3'" "H3'" sing N N 179 U "O3'" "HO3'" sing N N 180 U "C2'" "O2'" sing N N 181 U "C2'" "C1'" sing N N 182 U "C2'" "H2'" sing N N 183 U "O2'" "HO2'" sing N N 184 U "C1'" N1 sing N N 185 U "C1'" "H1'" sing N N 186 U N1 C2 sing N N 187 U N1 C6 sing N N 188 U C2 O2 doub N N 189 U C2 N3 sing N N 190 U N3 C4 sing N N 191 U N3 H3 sing N N 192 U C4 O4 doub N N 193 U C4 C5 sing N N 194 U C5 C6 doub N N 195 U C5 H5 sing N N 196 U C6 H6 sing N N 197 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9X9O 'double helix' 9X9O 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GDP 1 1_555 A C 57 1_555 -0.301 0.323 -0.291 -10.024 -6.058 5.857 1 U_GDP1:C57_U U 1 ? U 57 ? 19 1 1 A G 2 1_555 A C 56 1_555 -0.162 0.080 -0.199 -5.134 -15.882 0.764 2 U_G2:C56_U U 2 ? U 56 ? 19 1 1 A A 3 1_555 A U 55 1_555 0.247 -0.423 0.050 -2.192 -13.732 1.222 3 U_A3:U55_U U 3 ? U 55 ? 20 1 1 A A 4 1_555 A U 54 1_555 0.420 0.037 0.067 0.622 -19.019 4.756 4 U_A4:U54_U U 4 ? U 54 ? 20 1 1 A C 5 1_555 A G 53 1_555 0.398 -0.077 0.288 -4.818 -20.527 6.626 5 U_C5:G53_U U 5 ? U 53 ? 19 1 1 A C 6 1_555 A G 52 1_555 0.273 -0.144 0.510 -12.459 -15.856 -3.173 6 U_C6:G52_U U 6 ? U 52 ? 19 1 1 A U 7 1_555 A A 51 1_555 -0.016 0.116 0.244 2.333 -7.525 -0.760 7 U_U7:A51_U U 7 ? U 51 ? 20 1 1 A G 29 1_555 A C 50 1_555 -0.124 -0.146 -0.147 4.267 -3.912 3.885 8 U_G29:C50_U U 29 ? U 50 ? 19 1 1 A A 30 1_555 A U 49 1_555 -0.405 -0.169 -0.122 -13.534 -13.721 8.820 9 U_A30:U49_U U 30 ? U 49 ? 20 1 1 A G 31 1_555 A C 48 1_555 -0.160 -0.175 -0.086 -10.878 -10.431 -0.842 10 U_G31:C48_U U 31 ? U 48 ? 19 1 1 A G 32 1_555 A C 47 1_555 -0.119 -0.243 0.008 -6.844 -10.484 -2.677 11 U_G32:C47_U U 32 ? U 47 ? 19 1 1 A C 33 1_555 A G 46 1_555 0.136 -0.169 0.241 0.165 -8.655 0.662 12 U_C33:G46_U U 33 ? U 46 ? 19 1 1 A G 34 1_555 A C 45 1_555 -0.330 -0.238 0.066 3.209 -13.783 3.639 13 U_G34:C45_U U 34 ? U 45 ? 19 1 1 A C 35 1_555 A G 27 1_555 0.533 -0.112 -0.236 -6.311 0.676 2.392 14 U_C35:G27_U U 35 ? U 27 ? 19 1 1 A A 16 1_555 A G 13 1_555 -7.203 -4.879 1.144 -10.455 0.371 -14.176 15 U_A16:G13_U U 16 ? U 13 ? ? ? 1 A G 17 1_555 A C 12 1_555 -0.300 -0.193 -0.272 -2.730 -2.423 4.253 16 U_G17:C12_U U 17 ? U 12 ? 19 1 1 A G 18 1_555 A C 11 1_555 -0.510 -0.130 -0.301 -3.962 -14.546 2.745 17 U_G18:C11_U U 18 ? U 11 ? 19 1 1 A C 19 1_555 A G 10 1_555 0.301 -0.465 0.179 -0.692 -9.573 0.464 18 U_C19:G10_U U 19 ? U 10 ? 19 1 1 A G 20 1_555 A C 9 1_555 -0.081 -0.439 0.092 -4.877 -16.771 -0.114 19 U_G20:C9_U U 20 ? U 9 ? 19 1 1 A G 21 1_555 A C 8 1_555 0.121 0.230 0.152 -12.066 -20.174 1.240 20 U_G21:C8_U U 21 ? U 8 ? 19 1 1 A U 22 1_555 A A 28 1_555 -0.272 0.259 0.689 -17.199 -7.107 3.549 21 U_U22:A28_U U 22 ? U 28 ? 20 1 1 A G 23 1_555 A C 44 1_555 -0.568 -0.266 -0.371 -13.953 4.741 -3.560 22 U_G23:C44_U U 23 ? U 44 ? 19 1 1 A G 26 1_555 A A 43 1_555 6.877 -4.269 -0.194 -14.889 -25.866 3.824 23 U_G26:A43_U U 26 ? U 43 ? 11 10 1 A A 24 1_555 A A 42 1_555 4.286 1.178 0.305 -1.315 -6.026 -109.440 24 U_A24:A42_U U 24 ? U 42 ? 5 4 1 A G 39 1_555 A U 41 1_555 2.758 3.696 0.760 39.101 45.852 164.992 25 U_G39:U41_U U 39 ? U 41 ? ? ? 1 B GDP 1 1_555 B C 57 1_555 -0.363 0.354 -0.279 -11.057 -5.556 7.334 26 B_GDP1:C57_B B 1 ? B 57 ? 19 1 1 B G 2 1_555 B C 56 1_555 -0.201 0.092 -0.075 -5.927 -15.331 1.642 27 B_G2:C56_B B 2 ? B 56 ? 19 1 1 B A 3 1_555 B U 55 1_555 0.174 -0.376 0.067 -2.940 -13.300 3.185 28 B_A3:U55_B B 3 ? B 55 ? 20 1 1 B A 4 1_555 B U 54 1_555 0.470 0.108 0.066 0.603 -18.556 5.571 29 B_A4:U54_B B 4 ? B 54 ? 20 1 1 B C 5 1_555 B G 53 1_555 0.536 -0.050 0.257 -4.213 -18.181 6.320 30 B_C5:G53_B B 5 ? B 53 ? 19 1 1 B C 6 1_555 B G 52 1_555 0.361 -0.138 0.552 -13.253 -15.060 -2.920 31 B_C6:G52_B B 6 ? B 52 ? 19 1 1 B U 7 1_555 B A 51 1_555 -0.173 0.131 0.204 5.773 -7.249 -1.500 32 B_U7:A51_B B 7 ? B 51 ? 20 1 1 B G 29 1_555 B C 50 1_555 -0.280 -0.112 -0.210 6.297 -6.113 2.793 33 B_G29:C50_B B 29 ? B 50 ? 19 1 1 B A 30 1_555 B U 49 1_555 -0.250 -0.137 -0.190 -14.189 -12.997 7.297 34 B_A30:U49_B B 30 ? B 49 ? 20 1 1 B G 31 1_555 B C 48 1_555 0.022 -0.215 -0.215 -13.030 -10.335 -4.194 35 B_G31:C48_B B 31 ? B 48 ? 19 1 1 B G 32 1_555 B C 47 1_555 -0.218 -0.150 0.035 -6.130 -8.902 -0.948 36 B_G32:C47_B B 32 ? B 47 ? 19 1 1 B C 33 1_555 B G 46 1_555 0.315 -0.117 0.229 -0.446 -7.953 0.044 37 B_C33:G46_B B 33 ? B 46 ? 19 1 1 B G 34 1_555 B C 45 1_555 -0.303 -0.258 0.094 2.359 -13.394 2.180 38 B_G34:C45_B B 34 ? B 45 ? 19 1 1 B C 35 1_555 B G 27 1_555 0.424 -0.185 -0.269 -7.698 2.356 2.189 39 B_C35:G27_B B 35 ? B 27 ? 19 1 1 B A 16 1_555 B G 13 1_555 -7.129 -4.920 1.213 -8.551 1.274 -13.783 40 B_A16:G13_B B 16 ? B 13 ? ? ? 1 B G 17 1_555 B C 12 1_555 -0.256 -0.118 -0.167 -1.115 -0.621 6.072 41 B_G17:C12_B B 17 ? B 12 ? 19 1 1 B G 18 1_555 B C 11 1_555 -0.508 -0.076 -0.221 -4.222 -14.164 4.491 42 B_G18:C11_B B 18 ? B 11 ? 19 1 1 B C 19 1_555 B G 10 1_555 0.329 -0.388 0.207 -1.660 -9.255 -0.388 43 B_C19:G10_B B 19 ? B 10 ? 19 1 1 B G 20 1_555 B C 9 1_555 0.103 -0.457 -0.008 -6.256 -16.951 0.399 44 B_G20:C9_B B 20 ? B 9 ? 19 1 1 B G 21 1_555 B C 8 1_555 0.328 0.194 0.199 -13.347 -17.611 4.878 45 B_G21:C8_B B 21 ? B 8 ? 19 1 1 B U 22 1_555 B A 28 1_555 -0.379 0.235 0.768 -17.828 -8.942 5.199 46 B_U22:A28_B B 22 ? B 28 ? 20 1 1 B G 23 1_555 B C 44 1_555 -0.494 -0.277 -0.409 -14.973 4.516 -3.465 47 B_G23:C44_B B 23 ? B 44 ? 19 1 1 B G 26 1_555 B A 43 1_555 6.814 -4.240 -0.105 -15.975 -27.170 4.111 48 B_G26:A43_B B 26 ? B 43 ? 11 10 1 B A 24 1_555 B A 42 1_555 4.389 1.339 0.315 -1.257 -6.803 -111.600 49 B_A24:A42_B B 24 ? B 42 ? 5 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GDP 1 1_555 A C 57 1_555 A G 2 1_555 A C 56 1_555 -0.136 -1.289 3.083 -3.120 14.072 36.508 -3.402 -0.125 2.445 21.463 4.759 39.160 1 UU_GDP1G2:C56C57_UU U 1 ? U 57 ? U 2 ? U 56 ? 1 A G 2 1_555 A C 56 1_555 A A 3 1_555 A U 55 1_555 0.144 -1.364 3.170 0.510 7.282 34.492 -3.258 -0.167 2.834 12.113 -0.848 35.233 2 UU_G2A3:U55C56_UU U 2 ? U 56 ? U 3 ? U 55 ? 1 A A 3 1_555 A U 55 1_555 A A 4 1_555 A U 54 1_555 -0.086 -0.957 3.100 1.681 8.881 33.955 -2.800 0.373 2.763 14.882 -2.818 35.103 3 UU_A3A4:U54U55_UU U 3 ? U 55 ? U 4 ? U 54 ? 1 A A 4 1_555 A U 54 1_555 A C 5 1_555 A G 53 1_555 0.664 -1.379 3.263 0.880 9.261 32.263 -3.826 -1.014 2.788 16.248 -1.545 33.543 4 UU_A4C5:G53U54_UU U 4 ? U 54 ? U 5 ? U 53 ? 1 A C 5 1_555 A G 53 1_555 A C 6 1_555 A G 52 1_555 -0.481 -1.420 3.340 0.231 9.402 34.619 -3.612 0.814 2.866 15.450 -0.379 35.836 5 UU_C5C6:G52G53_UU U 5 ? U 53 ? U 6 ? U 52 ? 1 A C 6 1_555 A G 52 1_555 A U 7 1_555 A A 51 1_555 0.144 -0.994 2.894 4.015 8.357 28.949 -3.320 0.409 2.513 16.201 -7.783 30.367 6 UU_C6U7:A51G52_UU U 6 ? U 52 ? U 7 ? U 51 ? 1 A U 7 1_555 A A 51 1_555 A G 29 1_555 A C 50 1_555 -1.122 -1.659 3.078 0.756 13.596 40.217 -3.490 1.619 2.399 19.121 -1.063 42.370 7 UU_U7G29:C50A51_UU U 7 ? U 51 ? U 29 ? U 50 ? 1 A G 29 1_555 A C 50 1_555 A A 30 1_555 A U 49 1_555 -0.019 -2.104 3.460 -0.750 14.030 35.650 -4.879 -0.060 2.488 21.896 1.171 38.235 8 UU_G29A30:U49C50_UU U 29 ? U 50 ? U 30 ? U 49 ? 1 A A 30 1_555 A U 49 1_555 A G 31 1_555 A C 48 1_555 -1.172 -1.539 3.162 -1.021 5.567 30.899 -3.818 1.987 2.884 10.339 1.896 31.401 9 UU_A30G31:C48U49_UU U 30 ? U 49 ? U 31 ? U 48 ? 1 A G 31 1_555 A C 48 1_555 A G 32 1_555 A C 47 1_555 -0.083 -1.229 3.179 -0.902 8.196 31.935 -3.459 0.004 2.787 14.595 1.606 32.955 10 UU_G31G32:C47C48_UU U 31 ? U 48 ? U 32 ? U 47 ? 1 A G 32 1_555 A C 47 1_555 A C 33 1_555 A G 46 1_555 0.609 -1.161 3.018 -0.182 5.206 31.493 -2.958 -1.137 2.791 9.510 0.332 31.910 11 UU_G32C33:G46C47_UU U 32 ? U 47 ? U 33 ? U 46 ? 1 A C 33 1_555 A G 46 1_555 A G 34 1_555 A C 45 1_555 0.999 -1.898 3.084 4.111 7.497 28.530 -5.095 -1.177 2.626 14.797 -8.115 29.758 12 UU_C33G34:C45G46_UU U 33 ? U 46 ? U 34 ? U 45 ? 1 A G 34 1_555 A C 45 1_555 A C 35 1_555 A G 27 1_555 2.251 -0.934 3.371 7.346 -3.364 53.829 -0.800 -1.979 3.674 -3.693 -8.063 54.388 13 UU_G34C35:G27C45_UU U 34 ? U 45 ? U 35 ? U 27 ? 1 A A 16 1_555 A G 13 1_555 A G 17 1_555 A C 12 1_555 2.272 -1.076 3.063 5.034 10.857 47.793 -2.057 -2.375 2.977 13.161 -6.102 49.183 14 UU_A16G17:C12G13_UU U 16 ? U 13 ? U 17 ? U 12 ? 1 A G 17 1_555 A C 12 1_555 A G 18 1_555 A C 11 1_555 -0.637 -1.598 3.260 -2.362 7.471 30.222 -4.318 0.759 2.833 14.035 4.437 31.199 15 UU_G17G18:C11C12_UU U 17 ? U 12 ? U 18 ? U 11 ? 1 A G 18 1_555 A C 11 1_555 A C 19 1_555 A G 10 1_555 0.031 -1.363 3.159 -4.591 3.914 36.736 -2.628 -0.625 2.978 6.159 7.224 37.211 16 UU_G18C19:G10C11_UU U 18 ? U 11 ? U 19 ? U 10 ? 1 A C 19 1_555 A G 10 1_555 A G 20 1_555 A C 9 1_555 0.252 -2.027 3.214 3.158 9.819 26.446 -6.132 0.126 2.340 20.498 -6.593 28.353 17 UU_C19G20:C9G10_UU U 19 ? U 10 ? U 20 ? U 9 ? 1 A G 20 1_555 A C 9 1_555 A G 21 1_555 A C 8 1_555 0.613 -1.695 3.360 2.768 4.868 34.997 -3.500 -0.601 3.141 8.030 -4.567 35.429 18 UU_G20G21:C8C9_UU U 20 ? U 9 ? U 21 ? U 8 ? 1 A G 21 1_555 A C 8 1_555 A U 22 1_555 A A 28 1_555 -0.463 -1.043 3.317 -1.646 -0.745 31.061 -1.800 0.542 3.360 -1.390 3.071 31.112 19 UU_G21U22:A28C8_UU U 21 ? U 8 ? U 22 ? U 28 ? 1 A U 22 1_555 A A 28 1_555 A G 23 1_555 A C 44 1_555 2.121 0.367 3.152 19.311 0.902 43.294 0.377 -0.905 3.735 1.156 -24.756 47.224 20 UU_U22G23:C44A28_UU U 22 ? U 28 ? U 23 ? U 44 ? 1 A G 23 1_555 A C 44 1_555 A G 26 1_555 A A 43 1_555 0.065 0.174 3.996 12.175 27.127 67.797 -0.953 0.439 3.799 23.221 -10.422 73.311 21 UU_G23G26:A43C44_UU U 23 ? U 44 ? U 26 ? U 43 ? 1 A G 26 1_555 A A 43 1_555 A A 24 1_555 A A 42 1_555 -1.578 0.352 3.062 -2.475 8.439 -15.854 -5.324 -6.246 2.305 -27.967 -8.202 -18.116 22 UU_G26A24:A42A43_UU U 26 ? U 43 ? U 24 ? U 42 ? 1 A A 24 1_555 A A 42 1_555 A G 39 1_555 A U 41 1_555 3.001 -0.233 6.088 5.188 -22.546 115.960 0.299 -1.656 6.153 -13.227 -3.043 117.410 23 UU_A24G39:U41A42_UU U 24 ? U 42 ? U 39 ? U 41 ? 1 B GDP 1 1_555 B C 57 1_555 B G 2 1_555 B C 56 1_555 -0.149 -1.302 3.088 -3.968 12.657 36.342 -3.351 -0.208 2.516 19.512 6.118 38.610 24 BB_GDP1G2:C56C57_BB B 1 ? B 57 ? B 2 ? B 56 ? 1 B G 2 1_555 B C 56 1_555 B A 3 1_555 B U 55 1_555 0.254 -1.323 3.068 0.984 8.350 34.835 -3.225 -0.287 2.695 13.702 -1.615 35.805 25 BB_G2A3:U55C56_BB B 2 ? B 56 ? B 3 ? B 55 ? 1 B A 3 1_555 B U 55 1_555 B A 4 1_555 B U 54 1_555 -0.197 -0.907 3.124 1.528 8.686 34.904 -2.610 0.520 2.814 14.202 -2.499 35.967 26 BB_A3A4:U54U55_BB B 3 ? B 55 ? B 4 ? B 54 ? 1 B A 4 1_555 B U 54 1_555 B C 5 1_555 B G 53 1_555 0.542 -1.368 3.280 0.892 8.398 31.987 -3.759 -0.809 2.852 14.917 -1.585 33.055 27 BB_A4C5:G53U54_BB B 4 ? B 54 ? B 5 ? B 53 ? 1 B C 5 1_555 B G 53 1_555 B C 6 1_555 B G 52 1_555 -0.398 -1.460 3.358 -0.258 9.265 34.390 -3.701 0.615 2.883 15.328 0.427 35.581 28 BB_C5C6:G52G53_BB B 5 ? B 53 ? B 6 ? B 52 ? 1 B C 6 1_555 B G 52 1_555 B U 7 1_555 B A 51 1_555 0.114 -1.056 2.769 5.264 7.968 27.418 -3.526 0.709 2.356 16.200 -10.702 29.004 29 BB_C6U7:A51G52_BB B 6 ? B 52 ? B 7 ? B 51 ? 1 B U 7 1_555 B A 51 1_555 B G 29 1_555 B C 50 1_555 -1.063 -1.596 3.183 1.510 14.350 40.879 -3.418 1.574 2.474 19.815 -2.086 43.248 30 BB_U7G29:C50A51_BB B 7 ? B 51 ? B 29 ? B 50 ? 1 B G 29 1_555 B C 50 1_555 B A 30 1_555 B U 49 1_555 -0.007 -2.140 3.582 -1.391 13.985 37.105 -4.773 -0.150 2.636 21.073 2.096 39.590 31 BB_G29A30:U49C50_BB B 29 ? B 50 ? B 30 ? B 49 ? 1 B A 30 1_555 B U 49 1_555 B G 31 1_555 B C 48 1_555 -1.349 -1.582 3.199 -0.253 6.803 31.236 -4.020 2.409 2.811 12.449 0.462 31.951 32 BB_A30G31:C48U49_BB B 30 ? B 49 ? B 31 ? B 48 ? 1 B G 31 1_555 B C 48 1_555 B G 32 1_555 B C 47 1_555 0.187 -1.291 3.083 -1.423 7.062 30.087 -3.649 -0.599 2.705 13.364 2.693 30.918 33 BB_G31G32:C47C48_BB B 31 ? B 48 ? B 32 ? B 47 ? 1 B G 32 1_555 B C 47 1_555 B C 33 1_555 B G 46 1_555 0.612 -1.167 3.069 -0.157 6.434 33.315 -2.937 -1.073 2.799 11.094 0.270 33.914 34 BB_G32C33:G46C47_BB B 32 ? B 47 ? B 33 ? B 46 ? 1 B C 33 1_555 B G 46 1_555 B G 34 1_555 B C 45 1_555 0.815 -1.943 3.060 3.735 7.361 28.084 -5.249 -0.904 2.564 14.769 -7.494 29.249 35 BB_C33G34:C45G46_BB B 33 ? B 46 ? B 34 ? B 45 ? 1 B G 34 1_555 B C 45 1_555 B C 35 1_555 B G 27 1_555 2.270 -1.034 3.421 7.565 -4.149 52.876 -0.860 -1.995 3.755 -4.624 -8.432 53.525 36 BB_G34C35:G27C45_BB B 34 ? B 45 ? B 35 ? B 27 ? 1 B A 16 1_555 B G 13 1_555 B G 17 1_555 B C 12 1_555 2.340 -1.062 3.014 3.946 11.605 48.301 -2.040 -2.518 2.874 13.923 -4.734 49.742 37 BB_A16G17:C12G13_BB B 16 ? B 13 ? B 17 ? B 12 ? 1 B G 17 1_555 B C 12 1_555 B G 18 1_555 B C 11 1_555 -0.623 -1.657 3.287 -1.794 7.068 30.029 -4.421 0.837 2.863 13.394 3.399 30.882 38 BB_G17G18:C11C12_BB B 17 ? B 12 ? B 18 ? B 11 ? 1 B G 18 1_555 B C 11 1_555 B C 19 1_555 B G 10 1_555 -0.025 -1.337 3.153 -4.763 4.980 36.950 -2.686 -0.544 2.935 7.774 7.436 37.565 39 BB_G18C19:G10C11_BB B 18 ? B 11 ? B 19 ? B 10 ? 1 B C 19 1_555 B G 10 1_555 B G 20 1_555 B C 9 1_555 0.145 -1.910 3.265 4.288 7.983 26.974 -5.577 0.611 2.596 16.533 -8.879 28.429 40 BB_C19G20:C9G10_BB B 19 ? B 10 ? B 20 ? B 9 ? 1 B G 20 1_555 B C 9 1_555 B G 21 1_555 B C 8 1_555 0.625 -1.700 3.305 1.394 5.375 35.924 -3.458 -0.813 3.049 8.651 -2.243 36.336 41 BB_G20G21:C8C9_BB B 20 ? B 9 ? B 21 ? B 8 ? 1 B G 21 1_555 B C 8 1_555 B U 22 1_555 B A 28 1_555 -0.499 -1.029 3.306 -1.142 -0.063 28.633 -2.064 0.747 3.325 -0.128 2.308 28.656 42 BB_G21U22:A28C8_BB B 21 ? B 8 ? B 22 ? B 28 ? 1 B U 22 1_555 B A 28 1_555 B G 23 1_555 B C 44 1_555 2.010 0.439 3.185 18.996 0.649 44.273 0.483 -0.817 3.712 0.818 -23.940 47.991 43 BB_U22G23:C44A28_BB B 22 ? B 28 ? B 23 ? B 44 ? 1 B G 23 1_555 B C 44 1_555 B G 26 1_555 B A 43 1_555 0.062 0.183 3.981 11.142 26.924 67.263 -0.954 0.406 3.792 23.229 -9.613 72.616 44 BB_G23G26:A43C44_BB B 23 ? B 44 ? B 26 ? B 43 ? 1 B G 26 1_555 B A 43 1_555 B A 24 1_555 B A 42 1_555 -1.651 0.232 3.059 -2.324 7.999 -14.510 -5.508 -7.045 2.318 -28.778 -8.360 -16.719 45 BB_G26A24:A42A43_BB B 26 ? B 43 ? B 24 ? B 42 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9L8F _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9X9O _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.012008 _atom_sites.fract_transf_matrix[1][2] 0.006933 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013865 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009734 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_ # loop_ #