HEADER MEMBRANE PROTEIN 26-OCT-25 9XCR TITLE CRYO-EM STRUCTURE OF HALT (E643Q MUTANT), A PEPTIDASE-DOMAIN TITLE 2 CONTAINING ABC TRANSPORTER, INCUBATED WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LANTIBIOTIC MERSACIDIN TRANSPORTER SYSTEM; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALALKALIBACTERIUM HALODURANS C-125; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 GENE: BH0451; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS MEMBRANE PROTEIN, PEPTIDASE-DOMAIN CONTAINING ABC TRANSPORTER EXPDTA ELECTRON MICROSCOPY AUTHOR B.K.GAN,M.LUO REVDAT 1 28-OCT-26 9XCR 0 JRNL AUTH B.K.GAN,M.LUO JRNL TITL CRYO-EM STRUCTURE OF HALT (E643Q MUTANT), A PEPTIDASE-DOMAIN JRNL TITL 2 CONTAINING ABC TRANSPORTER, INCUBATED WITH ATP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.820 REMARK 3 NUMBER OF PARTICLES : 34916 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9XCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1300064952. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HALT (E643Q MUTANT), A REMARK 245 PEPTIDASE-DOMAIN CONTAINING ABC REMARK 245 TRANSPORTER, INCUBATED WITH ATP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3988.30 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 SER A 715 REMARK 465 GLU A 716 REMARK 465 GLU A 717 REMARK 465 GLN A 718 REMARK 465 LYS A 719 REMARK 465 VAL A 720 REMARK 465 PRO A 721 REMARK 465 GLN A 722 REMARK 465 SER A 723 REMARK 465 ILE A 724 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 465 ILE B 6 REMARK 465 LYS B 7 REMARK 465 HIS B 8 REMARK 465 ARG B 9 REMARK 465 ARG B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 PRO B 13 REMARK 465 PHE B 14 REMARK 465 ILE B 15 REMARK 465 GLU B 16 REMARK 465 GLN B 17 REMARK 465 LEU B 18 REMARK 465 GLN B 19 REMARK 465 GLN B 20 REMARK 465 THR B 21 REMARK 465 GLU B 22 REMARK 465 CYS B 23 REMARK 465 GLY B 24 REMARK 465 LEU B 25 REMARK 465 CYS B 26 REMARK 465 CYS B 27 REMARK 465 MET B 28 REMARK 465 ALA B 29 REMARK 465 MET B 30 REMARK 465 ILE B 31 REMARK 465 VAL B 32 REMARK 465 LYS B 33 REMARK 465 TYR B 34 REMARK 465 TYR B 35 REMARK 465 LYS B 36 REMARK 465 GLY B 37 REMARK 465 HIS B 38 REMARK 465 VAL B 39 REMARK 465 SER B 40 REMARK 465 LEU B 41 REMARK 465 HIS B 42 REMARK 465 TYR B 43 REMARK 465 LEU B 44 REMARK 465 ARG B 45 REMARK 465 GLU B 46 REMARK 465 ARG B 47 REMARK 465 MET B 48 REMARK 465 ALA B 49 REMARK 465 ASN B 50 REMARK 465 GLY B 51 REMARK 465 ARG B 52 REMARK 465 ASP B 53 REMARK 465 GLY B 54 REMARK 465 THR B 55 REMARK 465 THR B 56 REMARK 465 LEU B 57 REMARK 465 LEU B 58 REMARK 465 HIS B 59 REMARK 465 LEU B 60 REMARK 465 LYS B 61 REMARK 465 GLN B 62 REMARK 465 LEU B 63 REMARK 465 ALA B 64 REMARK 465 LYS B 65 REMARK 465 HIS B 66 REMARK 465 LEU B 67 REMARK 465 GLY B 68 REMARK 465 PHE B 69 REMARK 465 GLU B 70 REMARK 465 ALA B 71 REMARK 465 LYS B 72 REMARK 465 VAL B 73 REMARK 465 TYR B 74 REMARK 465 GLN B 75 REMARK 465 THR B 76 REMARK 465 PRO B 77 REMARK 465 ALA B 78 REMARK 465 GLU B 79 REMARK 465 HIS B 80 REMARK 465 LEU B 81 REMARK 465 HIS B 82 REMARK 465 MET B 83 REMARK 465 HIS B 84 REMARK 465 GLN B 85 REMARK 465 LEU B 86 REMARK 465 PRO B 87 REMARK 465 ALA B 88 REMARK 465 ILE B 89 REMARK 465 LEU B 90 REMARK 465 PHE B 91 REMARK 465 TRP B 92 REMARK 465 GLU B 93 REMARK 465 GLY B 94 REMARK 465 LYS B 95 REMARK 465 HIS B 96 REMARK 465 PHE B 97 REMARK 465 VAL B 98 REMARK 465 VAL B 99 REMARK 465 LEU B 100 REMARK 465 GLU B 101 REMARK 465 LYS B 102 REMARK 465 VAL B 103 REMARK 465 THR B 104 REMARK 465 LYS B 105 REMARK 465 ASN B 106 REMARK 465 HIS B 107 REMARK 465 TYR B 108 REMARK 465 TYR B 109 REMARK 465 ILE B 110 REMARK 465 VAL B 111 REMARK 465 ASP B 112 REMARK 465 PRO B 113 REMARK 465 ALA B 114 REMARK 465 LEU B 115 REMARK 465 GLY B 116 REMARK 465 ARG B 117 REMARK 465 LEU B 118 REMARK 465 LYS B 119 REMARK 465 ILE B 120 REMARK 465 ARG B 121 REMARK 465 GLN B 122 REMARK 465 ASP B 123 REMARK 465 GLU B 124 REMARK 465 LEU B 125 REMARK 465 GLN B 126 REMARK 465 GLN B 127 REMARK 465 LYS B 128 REMARK 465 TYR B 129 REMARK 465 THR B 130 REMARK 465 GLY B 131 REMARK 465 TYR B 132 REMARK 465 ILE B 133 REMARK 465 LEU B 134 REMARK 465 THR B 135 REMARK 465 CYS B 136 REMARK 465 ASN B 137 REMARK 465 PRO B 138 REMARK 465 GLU B 139 REMARK 465 ARG B 140 REMARK 465 GLN B 141 REMARK 465 PRO B 142 REMARK 465 ASP B 143 REMARK 465 TYR B 144 REMARK 465 GLN B 145 REMARK 465 LYS B 146 REMARK 465 PRO B 147 REMARK 465 LYS B 148 REMARK 465 ASN B 149 REMARK 465 TYR B 714 REMARK 465 SER B 715 REMARK 465 GLU B 716 REMARK 465 GLU B 717 REMARK 465 GLN B 718 REMARK 465 LYS B 719 REMARK 465 VAL B 720 REMARK 465 PRO B 721 REMARK 465 GLN B 722 REMARK 465 SER B 723 REMARK 465 ILE B 724 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 144 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ASP A 465 CG OD1 OD2 REMARK 470 ILE A 466 CG1 CG2 CD1 REMARK 470 GLU A 468 CG CD OE1 OE2 REMARK 470 ASN A 469 CG OD1 ND2 REMARK 470 ARG A 470 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 ARG B 491 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 688 CG OD1 OD2 REMARK 470 LYS B 690 CG CD CE NZ REMARK 470 ILE B 691 CG1 CG2 CD1 REMARK 470 ILE B 692 CG1 CG2 CD1 REMARK 470 GLU B 693 CG CD OE1 OE2 REMARK 470 THR B 694 OG1 CG2 REMARK 470 THR B 696 OG1 CG2 REMARK 470 HIS B 697 CG ND1 CD2 CE1 NE2 REMARK 470 THR B 698 OG1 CG2 REMARK 470 GLU B 699 CG CD OE1 OE2 REMARK 470 LEU B 700 CG CD1 CD2 REMARK 470 LEU B 701 CG CD1 CD2 REMARK 470 ASN B 702 CG OD1 ND2 REMARK 470 GLN B 703 CG CD OE1 NE2 REMARK 470 SER B 704 OG REMARK 470 TYR B 706 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 707 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 709 OG REMARK 470 PHE B 710 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 711 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 712 CG OD1 ND2 REMARK 470 ASN B 713 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 153 CG PRO A 153 CD -0.519 REMARK 500 PRO A 153 CD PRO A 153 N 0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 14 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 LEU A 81 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 PRO A 153 CA - N - CD ANGL. DEV. = -14.2 DEGREES REMARK 500 PRO A 153 CA - CB - CG ANGL. DEV. = -22.9 DEGREES REMARK 500 PRO A 153 CB - CG - CD ANGL. DEV. = 25.1 DEGREES REMARK 500 PRO A 153 N - CD - CG ANGL. DEV. = -28.6 DEGREES REMARK 500 LEU A 165 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 LEU A 185 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ASP A 286 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 642 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 LEU B 195 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 170.27 62.97 REMARK 500 CYS A 23 -35.58 -131.75 REMARK 500 MET A 48 -68.09 -95.03 REMARK 500 ARG A 52 -11.52 72.40 REMARK 500 LEU A 86 76.60 53.66 REMARK 500 GLU A 93 49.21 -85.92 REMARK 500 VAL A 103 -57.16 -126.13 REMARK 500 LYS A 105 -167.41 -163.20 REMARK 500 GLN A 127 -71.18 62.78 REMARK 500 THR A 135 70.71 57.45 REMARK 500 ASN A 137 66.54 30.24 REMARK 500 LYS A 152 73.76 55.69 REMARK 500 PHE A 192 -6.61 66.28 REMARK 500 ILE A 193 -55.58 -129.25 REMARK 500 LEU A 304 63.45 -100.29 REMARK 500 GLU A 468 -148.99 60.39 REMARK 500 ALA A 472 -77.39 54.91 REMARK 500 LEU A 473 69.64 61.44 REMARK 500 HIS A 474 94.11 -68.36 REMARK 500 LEU A 476 -167.11 -102.88 REMARK 500 SER A 516 -100.60 58.07 REMARK 500 ASP A 541 43.47 -141.57 REMARK 500 LYS A 556 34.10 -96.90 REMARK 500 PRO A 580 -166.87 -75.15 REMARK 500 GLU A 608 19.17 -140.71 REMARK 500 LEU A 632 15.04 -141.22 REMARK 500 LYS A 635 72.37 53.66 REMARK 500 GLN A 643 -61.98 -108.10 REMARK 500 ALA A 644 41.44 39.35 REMARK 500 SER A 647 -135.12 51.59 REMARK 500 ASP A 649 16.71 57.27 REMARK 500 SER A 661 59.01 -92.12 REMARK 500 ASP A 688 60.40 38.28 REMARK 500 TYR A 706 -177.67 59.80 REMARK 500 TYR A 707 -3.92 67.32 REMARK 500 ASN A 713 -95.29 56.73 REMARK 500 ASN B 248 56.16 -91.82 REMARK 500 LEU B 269 47.93 -91.19 REMARK 500 GLU B 360 -37.18 -132.23 REMARK 500 LYS B 471 59.03 38.85 REMARK 500 HIS B 474 -97.37 55.00 REMARK 500 SER B 518 31.16 -98.80 REMARK 500 LYS B 520 -95.40 58.34 REMARK 500 LEU B 548 -169.90 -78.22 REMARK 500 ILE B 557 -65.07 -121.41 REMARK 500 GLN B 569 -155.42 47.02 REMARK 500 PRO B 580 48.30 -83.34 REMARK 500 TYR B 607 -177.95 57.70 REMARK 500 HIS B 634 -14.24 -140.52 REMARK 500 ILE B 656 -51.34 -123.35 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 562 NE2 REMARK 620 2 ATP A 801 O1G 86.4 REMARK 620 3 ATP A 801 O3G 114.9 64.5 REMARK 620 4 ATP A 801 O2B 145.2 125.0 94.2 REMARK 620 5 ATP A 801 O3B 144.0 59.7 63.8 65.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 521 OG REMARK 620 2 GLN B 562 OE1 67.4 REMARK 620 3 GLN B 562 NE2 117.5 52.1 REMARK 620 4 GLN B 643 NE2 117.3 111.7 76.7 REMARK 620 5 ATP B 801 O1G 171.4 119.3 70.5 66.4 REMARK 620 6 ATP B 801 O2B 79.3 122.3 144.6 125.4 92.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-66741 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HALT (E643Q MUTANT), A PEPTIDASE-DOMAIN REMARK 900 CONTAINING ABC TRANSPORTER, INCUBATED WITH ATP DBREF 9XCR A 1 724 UNP Q9KFM8 Q9KFM8_HALH5 1 724 DBREF 9XCR B 1 724 UNP Q9KFM8 Q9KFM8_HALH5 1 724 SEQADV 9XCR GLN A 643 UNP Q9KFM8 GLU 643 ENGINEERED MUTATION SEQADV 9XCR GLN B 643 UNP Q9KFM8 GLU 643 ENGINEERED MUTATION SEQRES 1 A 724 MET THR ASP ASN LYS ILE LYS HIS ARG ARG LYS VAL PRO SEQRES 2 A 724 PHE ILE GLU GLN LEU GLN GLN THR GLU CYS GLY LEU CYS SEQRES 3 A 724 CYS MET ALA MET ILE VAL LYS TYR TYR LYS GLY HIS VAL SEQRES 4 A 724 SER LEU HIS TYR LEU ARG GLU ARG MET ALA ASN GLY ARG SEQRES 5 A 724 ASP GLY THR THR LEU LEU HIS LEU LYS GLN LEU ALA LYS SEQRES 6 A 724 HIS LEU GLY PHE GLU ALA LYS VAL TYR GLN THR PRO ALA SEQRES 7 A 724 GLU HIS LEU HIS MET HIS GLN LEU PRO ALA ILE LEU PHE SEQRES 8 A 724 TRP GLU GLY LYS HIS PHE VAL VAL LEU GLU LYS VAL THR SEQRES 9 A 724 LYS ASN HIS TYR TYR ILE VAL ASP PRO ALA LEU GLY ARG SEQRES 10 A 724 LEU LYS ILE ARG GLN ASP GLU LEU GLN GLN LYS TYR THR SEQRES 11 A 724 GLY TYR ILE LEU THR CYS ASN PRO GLU ARG GLN PRO ASP SEQRES 12 A 724 TYR GLN LYS PRO LYS ASN LEU TRP LYS PRO TYR LEU THR SEQRES 13 A 724 TYR MET VAL LYS LYS PRO LYS LEU LEU LEU PHE ILE ILE SEQRES 14 A 724 ALA VAL SER VAL THR LEU GLN LEU LEU THR LEU ALA ASN SEQRES 15 A 724 PRO LEU LEU VAL GLN PHE VAL ILE ASP PHE ILE LEU LEU SEQRES 16 A 724 PRO GLU ASN ARG GLU MET LEU GLN VAL PHE LEU ILE GLY SEQRES 17 A 724 LEU SER CYS TYR VAL PHE SER GLN ALA PHE PHE VAL PHE SEQRES 18 A 724 ILE GLN GLY ARG ALA LEU VAL ILE MET GLN ASN HIS LEU SEQRES 19 A 724 ASP ARG GLU MET MET THR LYS PHE PHE ARG HIS LEU LEU SEQRES 20 A 724 ASN LEU PRO TYR HIS PHE PHE GLN VAL ARG SER PHE GLY SEQRES 21 A 724 ASP ILE LEU PHE ARG ALA GLY SER LEU ARG VAL ILE ARG SEQRES 22 A 724 ASP LEU LEU ALA ASN GLN LEU LEU LYS GLY ILE LEU ASP SEQRES 23 A 724 ILE GLY MET LEU VAL VAL ILE LEU ALA TYR MET THR LEU SEQRES 24 A 724 PHE SER PRO LEU LEU THR LEU ILE VAL PHE LEU LEU ALA SEQRES 25 A 724 THR VAL ASN GLY LEU ILE ILE TYR PHE SER ARG PRO LYS SEQRES 26 A 724 ILE SER GLU ALA ASN GLN LYS GLU ILE MET LYS GLN SER SEQRES 27 A 724 GLU VAL GLN ALA THR GLN THR GLU THR MET TYR GLY ILE SEQRES 28 A 724 PHE GLY ILE LYS THR ALA GLY VAL GLU ASP THR MET TYR SEQRES 29 A 724 GLN LYS TRP GLU ASN ARG PHE ASP LYS LEU ILE LEU ALA SEQRES 30 A 724 TYR LYS ASN LYS GLU TYR ILE LEU ASN ASN VAL ASN THR SEQRES 31 A 724 ALA THR THR PHE LEU THR VAL ILE ALA PRO LEU ILE VAL SEQRES 32 A 724 LEU TYR ILE GLY SER HIS GLN VAL LEU ALA GLN ALA VAL SEQRES 33 A 724 THR MET GLY THR VAL VAL ALA PHE TYR SER VAL THR THR SEQRES 34 A 724 GLN PHE PHE GLY LEU SER SER SER LEU VAL HIS THR ILE SEQRES 35 A 724 ASN SER PHE ILE LEU ALA ASN ALA TYR LEU GLY ARG ALA SEQRES 36 A 724 GLN ASP VAL PHE ASP SER LYS GLU GLU ASP ILE GLY GLU SEQRES 37 A 724 ASN ARG LYS ALA LEU HIS ASN LEU HIS GLY GLU ILE THR SEQRES 38 A 724 LEU LYS ASP VAL SER PHE SER TYR SER ARG PHE GLY GLN SEQRES 39 A 724 GLU VAL VAL LYS ASP VAL SER LEU ARG VAL ALA PRO GLY SEQRES 40 A 724 THR LYS VAL ALA LEU VAL GLY LYS SER GLY SER GLY LYS SEQRES 41 A 724 SER THR LEU SER LYS ILE MET LEU GLY LEU TYR GLU PRO SEQRES 42 A 724 THR LYS GLY GLU VAL TYR TYR ASP GLY TYR ASN LEU ASN SEQRES 43 A 724 ASP LEU ASN LYS ARG ALA LEU ARG GLN LYS ILE GLY VAL SEQRES 44 A 724 VAL PRO GLN ASP VAL THR LEU LEU ASN GLN SER ILE ARG SEQRES 45 A 724 GLU ASN ILE ALA LEU HIS ASN PRO ASP THR SER MET GLU SEQRES 46 A 724 ASP ILE ILE GLU ALA ALA LYS ILE ALA GLN VAL HIS GLU SEQRES 47 A 724 GLU ILE MET ASN MET PRO MET ASN TYR GLU THR LEU VAL SEQRES 48 A 724 SER GLU MET GLY HIS ASN ILE SER GLY GLY GLN ARG GLN SEQRES 49 A 724 ARG ILE ALA LEU ALA ARG ALA LEU VAL HIS LYS PRO LYS SEQRES 50 A 724 ILE LEU LEU LEU ASP GLN ALA THR SER SER LEU ASP HIS SEQRES 51 A 724 VAL ASN GLU ALA LYS ILE ASP GLN TYR LEU SER ALA MET SEQRES 52 A 724 LYS CYS THR ARG ILE VAL ILE ALA HIS ARG LEU THR THR SEQRES 53 A 724 ILE MET ASN ALA ASP LEU ILE ILE VAL LEU GLU ASP GLY SEQRES 54 A 724 LYS ILE ILE GLU THR GLY THR HIS THR GLU LEU LEU ASN SEQRES 55 A 724 GLN SER GLY TYR TYR ALA SER PHE TYR ASN ASN TYR SER SEQRES 56 A 724 GLU GLU GLN LYS VAL PRO GLN SER ILE SEQRES 1 B 724 MET THR ASP ASN LYS ILE LYS HIS ARG ARG LYS VAL PRO SEQRES 2 B 724 PHE ILE GLU GLN LEU GLN GLN THR GLU CYS GLY LEU CYS SEQRES 3 B 724 CYS MET ALA MET ILE VAL LYS TYR TYR LYS GLY HIS VAL SEQRES 4 B 724 SER LEU HIS TYR LEU ARG GLU ARG MET ALA ASN GLY ARG SEQRES 5 B 724 ASP GLY THR THR LEU LEU HIS LEU LYS GLN LEU ALA LYS SEQRES 6 B 724 HIS LEU GLY PHE GLU ALA LYS VAL TYR GLN THR PRO ALA SEQRES 7 B 724 GLU HIS LEU HIS MET HIS GLN LEU PRO ALA ILE LEU PHE SEQRES 8 B 724 TRP GLU GLY LYS HIS PHE VAL VAL LEU GLU LYS VAL THR SEQRES 9 B 724 LYS ASN HIS TYR TYR ILE VAL ASP PRO ALA LEU GLY ARG SEQRES 10 B 724 LEU LYS ILE ARG GLN ASP GLU LEU GLN GLN LYS TYR THR SEQRES 11 B 724 GLY TYR ILE LEU THR CYS ASN PRO GLU ARG GLN PRO ASP SEQRES 12 B 724 TYR GLN LYS PRO LYS ASN LEU TRP LYS PRO TYR LEU THR SEQRES 13 B 724 TYR MET VAL LYS LYS PRO LYS LEU LEU LEU PHE ILE ILE SEQRES 14 B 724 ALA VAL SER VAL THR LEU GLN LEU LEU THR LEU ALA ASN SEQRES 15 B 724 PRO LEU LEU VAL GLN PHE VAL ILE ASP PHE ILE LEU LEU SEQRES 16 B 724 PRO GLU ASN ARG GLU MET LEU GLN VAL PHE LEU ILE GLY SEQRES 17 B 724 LEU SER CYS TYR VAL PHE SER GLN ALA PHE PHE VAL PHE SEQRES 18 B 724 ILE GLN GLY ARG ALA LEU VAL ILE MET GLN ASN HIS LEU SEQRES 19 B 724 ASP ARG GLU MET MET THR LYS PHE PHE ARG HIS LEU LEU SEQRES 20 B 724 ASN LEU PRO TYR HIS PHE PHE GLN VAL ARG SER PHE GLY SEQRES 21 B 724 ASP ILE LEU PHE ARG ALA GLY SER LEU ARG VAL ILE ARG SEQRES 22 B 724 ASP LEU LEU ALA ASN GLN LEU LEU LYS GLY ILE LEU ASP SEQRES 23 B 724 ILE GLY MET LEU VAL VAL ILE LEU ALA TYR MET THR LEU SEQRES 24 B 724 PHE SER PRO LEU LEU THR LEU ILE VAL PHE LEU LEU ALA SEQRES 25 B 724 THR VAL ASN GLY LEU ILE ILE TYR PHE SER ARG PRO LYS SEQRES 26 B 724 ILE SER GLU ALA ASN GLN LYS GLU ILE MET LYS GLN SER SEQRES 27 B 724 GLU VAL GLN ALA THR GLN THR GLU THR MET TYR GLY ILE SEQRES 28 B 724 PHE GLY ILE LYS THR ALA GLY VAL GLU ASP THR MET TYR SEQRES 29 B 724 GLN LYS TRP GLU ASN ARG PHE ASP LYS LEU ILE LEU ALA SEQRES 30 B 724 TYR LYS ASN LYS GLU TYR ILE LEU ASN ASN VAL ASN THR SEQRES 31 B 724 ALA THR THR PHE LEU THR VAL ILE ALA PRO LEU ILE VAL SEQRES 32 B 724 LEU TYR ILE GLY SER HIS GLN VAL LEU ALA GLN ALA VAL SEQRES 33 B 724 THR MET GLY THR VAL VAL ALA PHE TYR SER VAL THR THR SEQRES 34 B 724 GLN PHE PHE GLY LEU SER SER SER LEU VAL HIS THR ILE SEQRES 35 B 724 ASN SER PHE ILE LEU ALA ASN ALA TYR LEU GLY ARG ALA SEQRES 36 B 724 GLN ASP VAL PHE ASP SER LYS GLU GLU ASP ILE GLY GLU SEQRES 37 B 724 ASN ARG LYS ALA LEU HIS ASN LEU HIS GLY GLU ILE THR SEQRES 38 B 724 LEU LYS ASP VAL SER PHE SER TYR SER ARG PHE GLY GLN SEQRES 39 B 724 GLU VAL VAL LYS ASP VAL SER LEU ARG VAL ALA PRO GLY SEQRES 40 B 724 THR LYS VAL ALA LEU VAL GLY LYS SER GLY SER GLY LYS SEQRES 41 B 724 SER THR LEU SER LYS ILE MET LEU GLY LEU TYR GLU PRO SEQRES 42 B 724 THR LYS GLY GLU VAL TYR TYR ASP GLY TYR ASN LEU ASN SEQRES 43 B 724 ASP LEU ASN LYS ARG ALA LEU ARG GLN LYS ILE GLY VAL SEQRES 44 B 724 VAL PRO GLN ASP VAL THR LEU LEU ASN GLN SER ILE ARG SEQRES 45 B 724 GLU ASN ILE ALA LEU HIS ASN PRO ASP THR SER MET GLU SEQRES 46 B 724 ASP ILE ILE GLU ALA ALA LYS ILE ALA GLN VAL HIS GLU SEQRES 47 B 724 GLU ILE MET ASN MET PRO MET ASN TYR GLU THR LEU VAL SEQRES 48 B 724 SER GLU MET GLY HIS ASN ILE SER GLY GLY GLN ARG GLN SEQRES 49 B 724 ARG ILE ALA LEU ALA ARG ALA LEU VAL HIS LYS PRO LYS SEQRES 50 B 724 ILE LEU LEU LEU ASP GLN ALA THR SER SER LEU ASP HIS SEQRES 51 B 724 VAL ASN GLU ALA LYS ILE ASP GLN TYR LEU SER ALA MET SEQRES 52 B 724 LYS CYS THR ARG ILE VAL ILE ALA HIS ARG LEU THR THR SEQRES 53 B 724 ILE MET ASN ALA ASP LEU ILE ILE VAL LEU GLU ASP GLY SEQRES 54 B 724 LYS ILE ILE GLU THR GLY THR HIS THR GLU LEU LEU ASN SEQRES 55 B 724 GLN SER GLY TYR TYR ALA SER PHE TYR ASN ASN TYR SER SEQRES 56 B 724 GLU GLU GLN LYS VAL PRO GLN SER ILE HET ATP A 801 31 HET MG A 802 1 HET ATP B 801 31 HET MG B 802 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 2(MG 2+) HELIX 1 AA1 GLY A 24 TYR A 35 1 12 HELIX 2 AA2 LEU A 44 ALA A 49 1 6 HELIX 3 AA3 LEU A 58 LYS A 65 1 8 HELIX 4 AA4 TYR A 154 VAL A 159 1 6 HELIX 5 AA5 LYS A 161 LEU A 180 1 20 HELIX 6 AA6 LEU A 180 ASP A 191 1 12 HELIX 7 AA7 MET A 201 ASN A 248 1 48 HELIX 8 AA8 HIS A 252 ARG A 257 1 6 HELIX 9 AA9 PHE A 259 GLY A 267 1 9 HELIX 10 AB1 GLY A 267 GLY A 283 1 17 HELIX 11 AB2 ILE A 284 PHE A 300 1 17 HELIX 12 AB3 SER A 301 LEU A 304 5 4 HELIX 13 AB4 THR A 305 GLY A 350 1 46 HELIX 14 AB5 GLY A 350 LYS A 355 1 6 HELIX 15 AB6 VAL A 359 LYS A 373 1 15 HELIX 16 AB7 LEU A 374 LEU A 412 1 39 HELIX 17 AB8 THR A 417 ARG A 454 1 38 HELIX 18 AB9 LYS A 520 LYS A 525 1 6 HELIX 19 AC1 ASN A 544 LEU A 548 5 5 HELIX 20 AC2 SER A 570 ALA A 576 1 7 HELIX 21 AC3 SER A 583 ALA A 594 1 12 HELIX 22 AC4 VAL A 596 MET A 601 1 6 HELIX 23 AC5 SER A 619 ALA A 631 1 13 HELIX 24 AC6 VAL A 651 GLN A 658 1 8 HELIX 25 AC7 ARG A 673 ILE A 677 5 5 HELIX 26 AC8 THR A 696 LEU A 701 1 6 HELIX 27 AC9 TRP B 151 THR B 156 1 6 HELIX 28 AD1 LYS B 161 LEU B 180 1 20 HELIX 29 AD2 LEU B 180 PHE B 192 1 13 HELIX 30 AD3 MET B 201 ASN B 248 1 48 HELIX 31 AD4 SER B 258 ALA B 266 1 9 HELIX 32 AD5 ARG B 270 LEU B 299 1 30 HELIX 33 AD6 THR B 305 THR B 313 1 9 HELIX 34 AD7 GLY B 316 GLY B 350 1 35 HELIX 35 AD8 GLY B 350 GLY B 358 1 9 HELIX 36 AD9 GLU B 360 LEU B 412 1 53 HELIX 37 AE1 THR B 417 ASP B 460 1 44 HELIX 38 AE2 LYS B 520 LYS B 525 1 6 HELIX 39 AE3 ASN B 549 ARG B 554 1 6 HELIX 40 AE4 GLN B 555 ILE B 557 5 3 HELIX 41 AE5 SER B 570 ALA B 576 1 7 HELIX 42 AE6 SER B 583 ALA B 594 1 12 HELIX 43 AE7 VAL B 596 ILE B 600 5 5 HELIX 44 AE8 SER B 619 ALA B 631 1 13 HELIX 45 AE9 HIS B 697 GLN B 703 1 7 HELIX 46 AF1 GLY B 705 TYR B 711 1 7 SHEET 1 AA1 3 VAL A 497 ARG A 503 0 SHEET 2 AA1 3 THR A 481 PHE A 487 -1 N LEU A 482 O LEU A 502 SHEET 3 AA1 3 LYS A 535 TYR A 539 -1 O LYS A 535 N SER A 486 SHEET 1 AA2 6 ILE A 557 VAL A 560 0 SHEET 2 AA2 6 ILE A 638 LEU A 641 1 O LEU A 640 N GLY A 558 SHEET 3 AA2 6 THR A 666 ILE A 670 1 O THR A 666 N LEU A 639 SHEET 4 AA2 6 THR A 508 VAL A 513 1 N VAL A 510 O ARG A 667 SHEET 5 AA2 6 LEU A 682 VAL A 685 1 O ILE A 684 N VAL A 513 SHEET 6 AA2 6 THR A 694 GLY A 695 -1 O GLY A 695 N ILE A 683 SHEET 1 AA3 6 VAL B 559 VAL B 560 0 SHEET 2 AA3 6 LEU B 639 LEU B 641 1 O LEU B 640 N VAL B 560 SHEET 3 AA3 6 ARG B 667 ILE B 670 1 O ILE B 670 N LEU B 641 SHEET 4 AA3 6 LYS B 509 GLY B 514 1 N VAL B 510 O ARG B 667 SHEET 5 AA3 6 LEU B 682 GLU B 687 1 O ILE B 684 N ALA B 511 SHEET 6 AA3 6 LYS B 690 GLY B 695 -1 O LYS B 690 N GLU B 687 LINK NE2 GLN A 562 MG MG A 802 1555 1555 2.18 LINK O1G ATP A 801 MG MG A 802 1555 1555 2.57 LINK O3G ATP A 801 MG MG A 802 1555 1555 2.11 LINK O2B ATP A 801 MG MG A 802 1555 1555 2.07 LINK O3B ATP A 801 MG MG A 802 1555 1555 2.53 LINK OG SER B 521 MG MG B 802 1555 1555 2.29 LINK OE1 GLN B 562 MG MG B 802 1555 1555 2.06 LINK NE2 GLN B 562 MG MG B 802 1555 1555 2.81 LINK NE2 GLN B 643 MG MG B 802 1555 1555 2.27 LINK O1G ATP B 801 MG MG B 802 1555 1555 2.07 LINK O2B ATP B 801 MG MG B 802 1555 1555 2.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 445510081 CONECT 861410113 CONECT 894310113 CONECT 894410113 CONECT 958010113 CONECT1005010051100521005310057 CONECT100511005010081 CONECT1005210050 CONECT100531005010081 CONECT1005410055100561005710061 CONECT1005510054 CONECT100561005410081 CONECT10057100501005410081 CONECT1005810059100601006110062 CONECT1005910058 CONECT1006010058 CONECT100611005410058 CONECT100621005810063 CONECT100631006210064 CONECT10064100631006510066 CONECT100651006410070 CONECT10066100641006710068 CONECT1006710066 CONECT10068100661006910070 CONECT1006910068 CONECT10070100651006810071 CONECT10071100701007210080 CONECT100721007110073 CONECT100731007210074 CONECT10074100731007510080 CONECT10075100741007610077 CONECT1007610075 CONECT100771007510078 CONECT100781007710079 CONECT100791007810080 CONECT10080100711007410079 CONECT10081 4455100511005310056 CONECT1008110057 CONECT1008210083100841008510089 CONECT100831008210113 CONECT1008410082 CONECT1008510082 CONECT1008610087100881008910093 CONECT1008710086 CONECT100881008610113 CONECT100891008210086 CONECT1009010091100921009310094 CONECT1009110090 CONECT1009210090 CONECT100931008610090 CONECT100941009010095 CONECT100951009410096 CONECT10096100951009710098 CONECT100971009610102 CONECT10098100961009910100 CONECT1009910098 CONECT10100100981010110102 CONECT1010110100 CONECT10102100971010010103 CONECT10103101021010410112 CONECT101041010310105 CONECT101051010410106 CONECT10106101051010710112 CONECT10107101061010810109 CONECT1010810107 CONECT101091010710110 CONECT101101010910111 CONECT101111011010112 CONECT10112101031010610111 CONECT10113 8614 8943 8944 9580 CONECT101131008310088 MASTER 465 0 4 46 15 0 0 610111 2 71 112 END