HEADER VIRAL PROTEIN/IMMUNE SYSTEM 30-OCT-25 9XGO TITLE OMICRON-SPECIFIC ULTRA-POTENT SARS-COV-2 NEUTRALIZING ANTIBODIES TITLE 2 TARGETING THE N1/N2 LOOP OF SPIKE N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BD58-0730 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BD58-0730 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S1; COMPND 11 CHAIN: N; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 15 CHAIN: R; COMPND 16 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 15 2; SOURCE 16 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 17 ORGANISM_TAXID: 2697049; SOURCE 18 VARIANT: OMICRON/XBB.1.5; SOURCE 19 GENE: S, 2; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 24 2; SOURCE 25 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 26 ORGANISM_TAXID: 2697049; SOURCE 27 VARIANT: OMICRON/XBB.1.5; SOURCE 28 GENE: S, 2; SOURCE 29 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2; N-TERMINAL DOMAIN; ANTIBODIES; N1/N2 LOOP; ACE2 KEYWDS 2 COMPETITION, VIRAL PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE KEYWDS 3 SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Z.Q.LI,X.NIU REVDAT 1 03-DEC-25 9XGO 0 JRNL AUTH X.NIU,Z.LI,J.WANG,F.JIAN,Y.YU,W.SONG,A.YISIMAYI,S.DU, JRNL AUTH 2 Z.ZHANG,Q.WANG,J.WANG,R.AN,Y.WANG,P.WANG,H.SUN,L.YU,S.YANG, JRNL AUTH 3 T.XIAO,Q.GU,F.SHAO,Y.WANG,J.XIAO,Y.CAO JRNL TITL OMICRON-SPECIFIC ULTRA-POTENT SARS-COV-2 NEUTRALIZING JRNL TITL 2 ANTIBODIES TARGETING THE N1/N2 LOOP OF SPIKE N-TERMINAL JRNL TITL 3 DOMAIN. JRNL REF EMERG MICROBES INFECT V. 13 12990 2024 JRNL REFN ESSN 2222-1751 JRNL PMID 39361729 JRNL DOI 10.1080/22221751.2024.2412990 REMARK 2 REMARK 2 RESOLUTION. 3.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.770 REMARK 3 NUMBER OF PARTICLES : 111000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9XGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 03-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1300065277. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : BD58-0730-S 6P TRIMER COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, N, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR N 248 REMARK 465 LEU N 249 REMARK 465 THR N 250 REMARK 465 PRO N 251 REMARK 465 GLY N 252 REMARK 465 ASP N 253 REMARK 465 SER N 254 REMARK 465 SER N 255 REMARK 465 SER N 256 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR L 5 OG1 THR L 23 2.12 REMARK 500 O THR R 393 OG1 THR R 523 2.14 REMARK 500 OG SER L 65 OG1 THR L 76 2.17 REMARK 500 OG1 THR L 94 O SER L 96 2.18 REMARK 500 OG SER L 17 O ASN R 481 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS R 391 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET H 33 119.03 -160.41 REMARK 500 ASN H 51 113.98 -39.20 REMARK 500 SER H 87 8.68 56.85 REMARK 500 ASP L 52 -169.52 -116.25 REMARK 500 ASP N 53 -168.33 -162.72 REMARK 500 THR N 73 147.87 -175.47 REMARK 500 THR N 76 41.49 38.83 REMARK 500 ALA N 83 135.87 -171.90 REMARK 500 ASP N 88 -117.39 56.49 REMARK 500 PHE N 106 129.93 -35.72 REMARK 500 GLN N 134 38.84 -99.89 REMARK 500 LYS N 147 -63.30 -90.83 REMARK 500 TRP N 152 -137.53 51.92 REMARK 500 CYS N 166 -174.99 -172.03 REMARK 500 THR N 167 -169.33 -100.69 REMARK 500 VAL N 171 61.02 33.13 REMARK 500 SER N 172 -169.32 -101.74 REMARK 500 ASP N 178 52.16 -92.37 REMARK 500 ASP N 198 47.12 34.45 REMARK 500 LYS N 206 142.91 -170.16 REMARK 500 LEU N 216 73.58 61.94 REMARK 500 PRO N 217 -174.37 -67.07 REMARK 500 PHE N 220 32.82 -96.50 REMARK 500 ASN N 234 38.20 -97.76 REMARK 500 ASN N 282 48.98 -90.98 REMARK 500 CYS N 291 -1.65 66.05 REMARK 500 PHE R 342 -60.28 -94.79 REMARK 500 CYS R 361 -168.99 -160.23 REMARK 500 TYR R 365 -8.13 -53.92 REMARK 500 PHE R 377 21.96 -140.79 REMARK 500 ASN R 487 17.11 56.53 REMARK 500 ASN R 536 -5.52 73.51 REMARK 500 CYS R 538 149.61 -178.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN N 81 PRO N 82 144.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-66856 RELATED DB: EMDB REMARK 900 OMICRON-SPECIFIC ULTRA-POTENT SARS-COV-2 NEUTRALIZING ANTIBODIES REMARK 900 TARGETING THE N1/N2 LOOP OF SPIKE N-TERMINAL DOMAIN DBREF 9XGO H 1 121 PDB 9XGO 9XGO 1 121 DBREF 9XGO L 1 112 PDB 9XGO 9XGO 1 112 DBREF 9XGO N 15 303 UNP P0DTC2 SPIKE_SARS2 15 303 DBREF 9XGO R 323 545 UNP P0DTC2 SPIKE_SARS2 323 545 SEQADV 9XGO ILE N 19 UNP P0DTC2 THR 19 VARIANT SEQADV 9XGO N UNP P0DTC2 LEU 24 DELETION SEQADV 9XGO N UNP P0DTC2 PRO 25 DELETION SEQADV 9XGO N UNP P0DTC2 PRO 26 DELETION SEQADV 9XGO SER N 27 UNP P0DTC2 ALA 27 VARIANT SEQADV 9XGO ALA N 83 UNP P0DTC2 VAL 83 VARIANT SEQADV 9XGO ASP N 142 UNP P0DTC2 GLY 142 VARIANT SEQADV 9XGO N UNP P0DTC2 TYR 144 DELETION SEQADV 9XGO GLN N 146 UNP P0DTC2 HIS 146 VARIANT SEQADV 9XGO GLU N 183 UNP P0DTC2 GLN 183 VARIANT SEQADV 9XGO GLU N 213 UNP P0DTC2 VAL 213 VARIANT SEQADV 9XGO HIS R 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 9XGO THR R 346 UNP P0DTC2 ARG 346 VARIANT SEQADV 9XGO ILE R 368 UNP P0DTC2 LEU 368 VARIANT SEQADV 9XGO PHE R 371 UNP P0DTC2 SER 371 VARIANT SEQADV 9XGO PRO R 373 UNP P0DTC2 SER 373 VARIANT SEQADV 9XGO PHE R 375 UNP P0DTC2 SER 375 VARIANT SEQADV 9XGO ALA R 376 UNP P0DTC2 THR 376 VARIANT SEQADV 9XGO ASN R 405 UNP P0DTC2 ASP 405 VARIANT SEQADV 9XGO SER R 408 UNP P0DTC2 ARG 408 VARIANT SEQADV 9XGO ASN R 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 9XGO LYS R 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 9XGO PRO R 445 UNP P0DTC2 VAL 445 VARIANT SEQADV 9XGO SER R 446 UNP P0DTC2 GLY 446 VARIANT SEQADV 9XGO LYS R 460 UNP P0DTC2 ASN 460 VARIANT SEQADV 9XGO ASN R 477 UNP P0DTC2 SER 477 VARIANT SEQADV 9XGO LYS R 478 UNP P0DTC2 THR 478 VARIANT SEQADV 9XGO ALA R 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 9XGO PRO R 486 UNP P0DTC2 PHE 486 VARIANT SEQADV 9XGO SER R 490 UNP P0DTC2 PHE 490 VARIANT SEQADV 9XGO ARG R 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 9XGO TYR R 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 9XGO HIS R 505 UNP P0DTC2 TYR 505 VARIANT SEQRES 1 H 121 VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS PRO SEQRES 2 H 121 GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY TYR SEQRES 3 H 121 THR PHE THR SER TYR TYR MET HIS TRP VAL ARG GLN ALA SEQRES 4 H 121 PRO GLY GLN GLY LEU GLU TRP MET GLY ILE ILE ASN PRO SEQRES 5 H 121 SER GLY GLY SER THR SER ASN ALA GLN LYS PHE GLN GLY SEQRES 6 H 121 ARG VAL THR MET THR ARG ASP THR PHE THR SER THR VAL SEQRES 7 H 121 TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR ALA SEQRES 8 H 121 VAL TYR TYR CYS ALA ARG ASP ILE ALA ARG GLY ILE GLY SEQRES 9 H 121 GLU TYR TYR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 121 THR VAL SER SER SEQRES 1 L 112 GLN SER ALA LEU THR GLN THR ALA SER VAL SER GLY SER SEQRES 2 L 112 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 L 112 SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 L 112 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR ASP SEQRES 5 L 112 VAL TYR LYS ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 L 112 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 112 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 L 112 SER TYR THR THR SER SER THR LEU LEU PHE GLY GLY GLY SEQRES 9 L 112 THR LYS LEU THR VAL LEU GLY GLN SEQRES 1 N 285 CYS VAL ASN LEU ILE THR ARG THR GLN SER TYR THR ASN SEQRES 2 N 285 SER PHE THR ARG GLY VAL TYR TYR PRO ASP LYS VAL PHE SEQRES 3 N 285 ARG SER SER VAL LEU HIS SER THR GLN ASP LEU PHE LEU SEQRES 4 N 285 PRO PHE PHE SER ASN VAL THR TRP PHE HIS ALA ILE HIS SEQRES 5 N 285 VAL SER GLY THR ASN GLY THR LYS ARG PHE ASP ASN PRO SEQRES 6 N 285 ALA LEU PRO PHE ASN ASP GLY VAL TYR PHE ALA SER THR SEQRES 7 N 285 GLU LYS SER ASN ILE ILE ARG GLY TRP ILE PHE GLY THR SEQRES 8 N 285 THR LEU ASP SER LYS THR GLN SER LEU LEU ILE VAL ASN SEQRES 9 N 285 ASN ALA THR ASN VAL VAL ILE LYS VAL CYS GLU PHE GLN SEQRES 10 N 285 PHE CYS ASN ASP PRO PHE LEU ASP VAL TYR GLN LYS ASN SEQRES 11 N 285 ASN LYS SER TRP MET GLU SER GLU PHE ARG VAL TYR SER SEQRES 12 N 285 SER ALA ASN ASN CYS THR PHE GLU TYR VAL SER GLN PRO SEQRES 13 N 285 PHE LEU MET ASP LEU GLU GLY LYS GLU GLY ASN PHE LYS SEQRES 14 N 285 ASN LEU ARG GLU PHE VAL PHE LYS ASN ILE ASP GLY TYR SEQRES 15 N 285 PHE LYS ILE TYR SER LYS HIS THR PRO ILE ASN LEU GLU SEQRES 16 N 285 ARG ASP LEU PRO GLN GLY PHE SER ALA LEU GLU PRO LEU SEQRES 17 N 285 VAL ASP LEU PRO ILE GLY ILE ASN ILE THR ARG PHE GLN SEQRES 18 N 285 THR LEU LEU ALA LEU HIS ARG SER TYR LEU THR PRO GLY SEQRES 19 N 285 ASP SER SER SER GLY TRP THR ALA GLY ALA ALA ALA TYR SEQRES 20 N 285 TYR VAL GLY TYR LEU GLN PRO ARG THR PHE LEU LEU LYS SEQRES 21 N 285 TYR ASN GLU ASN GLY THR ILE THR ASP ALA VAL ASP CYS SEQRES 22 N 285 ALA LEU ASP PRO LEU SER GLU THR LYS CYS THR LEU SEQRES 1 R 223 THR GLU SER ILE VAL ARG PHE PRO ASN ILE THR ASN LEU SEQRES 2 R 223 CYS PRO PHE HIS GLU VAL PHE ASN ALA THR THR PHE ALA SEQRES 3 R 223 SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SER ASN CYS SEQRES 4 R 223 VAL ALA ASP TYR SER VAL ILE TYR ASN PHE ALA PRO PHE SEQRES 5 R 223 PHE ALA PHE LYS CYS TYR GLY VAL SER PRO THR LYS LEU SEQRES 6 R 223 ASN ASP LEU CYS PHE THR ASN VAL TYR ALA ASP SER PHE SEQRES 7 R 223 VAL ILE ARG GLY ASN GLU VAL SER GLN ILE ALA PRO GLY SEQRES 8 R 223 GLN THR GLY ASN ILE ALA ASP TYR ASN TYR LYS LEU PRO SEQRES 9 R 223 ASP ASP PHE THR GLY CYS VAL ILE ALA TRP ASN SER ASN SEQRES 10 R 223 LYS LEU ASP SER LYS PRO SER GLY ASN TYR ASN TYR LEU SEQRES 11 R 223 TYR ARG LEU PHE ARG LYS SER LYS LEU LYS PRO PHE GLU SEQRES 12 R 223 ARG ASP ILE SER THR GLU ILE TYR GLN ALA GLY ASN LYS SEQRES 13 R 223 PRO CYS ASN GLY VAL ALA GLY PRO ASN CYS TYR SER PRO SEQRES 14 R 223 LEU GLN SER TYR GLY PHE ARG PRO THR TYR GLY VAL GLY SEQRES 15 R 223 HIS GLN PRO TYR ARG VAL VAL VAL LEU SER PHE GLU LEU SEQRES 16 R 223 LEU HIS ALA PRO ALA THR VAL CYS GLY PRO LYS LYS SER SEQRES 17 R 223 THR ASN LEU VAL LYS ASN LYS CYS VAL ASN PHE ASN PHE SEQRES 18 R 223 ASN GLY HET NAG N 401 14 HET NAG N 402 14 HET NAG N 403 14 HET NAG N 404 14 HET NAG N 405 14 HET NAG N 406 14 HET NAG R 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 7(C8 H15 N O6) HELIX 1 AA1 THR L 25 TYR L 32 1 8 HELIX 2 AA2 GLN L 81 ALA L 86 5 6 HELIX 3 AA3 ASP N 294 THR N 302 1 9 HELIX 4 AA4 SER R 349 TRP R 353 5 5 HELIX 5 AA5 TYR R 365 ALA R 372 1 8 HELIX 6 AA6 SER R 383 ASN R 388 1 6 HELIX 7 AA7 ARG R 403 ALA R 411 5 9 SHEET 1 AA1 4 VAL H 4 GLN H 5 0 SHEET 2 AA1 4 LYS H 18 LYS H 22 -1 O LYS H 22 N VAL H 4 SHEET 3 AA1 4 THR H 77 GLU H 81 -1 O VAL H 78 N CYS H 21 SHEET 4 AA1 4 THR H 70 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AA2 5 GLU H 9 LYS H 11 0 SHEET 2 AA2 5 THR H 115 VAL H 119 1 O THR H 118 N LYS H 11 SHEET 3 AA2 5 VAL H 92 ASP H 98 -1 N TYR H 93 O THR H 115 SHEET 4 AA2 5 HIS H 34 GLN H 38 -1 N HIS H 34 O ALA H 96 SHEET 5 AA2 5 LEU H 44 ILE H 49 -1 O MET H 47 N TRP H 35 SHEET 1 AA3 4 GLU H 9 LYS H 11 0 SHEET 2 AA3 4 THR H 115 VAL H 119 1 O THR H 118 N LYS H 11 SHEET 3 AA3 4 VAL H 92 ASP H 98 -1 N TYR H 93 O THR H 115 SHEET 4 AA3 4 PHE H 108 ASP H 109 -1 O ASP H 109 N ARG H 97 SHEET 1 AA4 2 SER L 11 GLY L 12 0 SHEET 2 AA4 2 THR L 108 VAL L 109 1 O THR L 108 N GLY L 12 SHEET 1 AA5 2 GLN L 39 GLN L 40 0 SHEET 2 AA5 2 ASP L 87 TYR L 88 -1 O ASP L 87 N GLN L 40 SHEET 1 AA6 2 SER L 91 TYR L 93 0 SHEET 2 AA6 2 LEU L 99 PHE L 101 -1 O LEU L 100 N SER L 92 SHEET 1 AA7 2 THR N 20 THR N 22 0 SHEET 2 AA7 2 HIS N 66 ILE N 68 -1 O ILE N 68 N THR N 20 SHEET 1 AA8 2 TYR N 28 SER N 31 0 SHEET 2 AA8 2 SER N 60 THR N 63 -1 O VAL N 62 N THR N 29 SHEET 1 AA9 3 LEU N 48 HIS N 49 0 SHEET 2 AA9 3 LEU N 276 TYR N 279 -1 O LEU N 277 N HIS N 49 SHEET 3 AA9 3 ILE N 285 VAL N 289 -1 O ASP N 287 N LYS N 278 SHEET 1 AB1 2 GLN N 52 PHE N 55 0 SHEET 2 AB1 2 GLN N 271 THR N 274 -1 O GLN N 271 N PHE N 55 SHEET 1 AB2 4 GLY N 103 TRP N 104 0 SHEET 2 AB2 4 THR N 240 HIS N 245 -1 O LEU N 241 N GLY N 103 SHEET 3 AB2 4 PHE N 140 TYR N 145 1 N LEU N 141 O LEU N 242 SHEET 4 AB2 4 GLU N 154 SER N 155 -1 O GLU N 154 N TYR N 145 SHEET 1 AB3 3 LEU N 189 ILE N 197 0 SHEET 2 AB3 3 TYR N 200 THR N 208 -1 O TYR N 200 N ILE N 197 SHEET 3 AB3 3 GLU N 224 LEU N 229 -1 O LEU N 226 N ILE N 203 SHEET 1 AB4 4 ARG R 355 ILE R 358 0 SHEET 2 AB4 4 VAL R 395 ILE R 402 -1 O ALA R 397 N LYS R 356 SHEET 3 AB4 4 TYR R 508 SER R 514 -1 O TYR R 508 N ILE R 402 SHEET 4 AB4 4 CYS R 432 ASN R 437 -1 N ILE R 434 O VAL R 511 SHEET 1 AB5 2 LEU R 452 ARG R 454 0 SHEET 2 AB5 2 LEU R 492 SER R 494 -1 O GLN R 493 N TYR R 453 SSBOND 1 CYS H 21 CYS H 95 1555 1555 2.03 SSBOND 2 CYS L 22 CYS L 90 1555 1555 2.03 SSBOND 3 CYS N 15 CYS N 136 1555 1555 2.03 SSBOND 4 CYS N 131 CYS N 166 1555 1555 2.03 SSBOND 5 CYS N 291 CYS N 301 1555 1555 2.02 SSBOND 6 CYS R 336 CYS R 361 1555 1555 2.03 SSBOND 7 CYS R 379 CYS R 432 1555 1555 2.03 SSBOND 8 CYS R 391 CYS R 525 1555 1555 2.03 SSBOND 9 CYS R 480 CYS R 488 1555 1555 2.03 LINK ND2 ASN N 61 C1 NAG N 403 1555 1555 1.44 LINK ND2 ASN N 74 C1 NAG N 406 1555 1555 1.44 LINK ND2 ASN N 122 C1 NAG N 402 1555 1555 1.44 LINK ND2 ASN N 165 C1 NAG N 401 1555 1555 1.43 LINK ND2 ASN N 234 C1 NAG N 404 1555 1555 1.44 LINK ND2 ASN N 282 C1 NAG N 405 1555 1555 1.44 LINK ND2 ASN R 343 C1 NAG R 601 1555 1555 1.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 146 731 CONECT 731 146 CONECT 1085 1606 CONECT 1606 1085 CONECT 1768 2718 CONECT 2126 5794 CONECT 2230 5836 CONECT 2608 5780 CONECT 2672 2962 CONECT 2718 1768 CONECT 2956 5766 CONECT 2962 2672 CONECT 3521 5808 CONECT 3841 5822 CONECT 3901 3974 CONECT 3974 3901 CONECT 4102 4311 CONECT 4165 5850 CONECT 4311 4102 CONECT 4460 4867 CONECT 4550 5609 CONECT 4867 4460 CONECT 5266 5315 CONECT 5315 5266 CONECT 5609 4550 CONECT 5766 2956 5767 5777 CONECT 5767 5766 5768 5774 CONECT 5768 5767 5769 5775 CONECT 5769 5768 5770 5776 CONECT 5770 5769 5771 5777 CONECT 5771 5770 5778 CONECT 5772 5773 5774 5779 CONECT 5773 5772 CONECT 5774 5767 5772 CONECT 5775 5768 CONECT 5776 5769 CONECT 5777 5766 5770 CONECT 5778 5771 CONECT 5779 5772 CONECT 5780 2608 5781 5791 CONECT 5781 5780 5782 5788 CONECT 5782 5781 5783 5789 CONECT 5783 5782 5784 5790 CONECT 5784 5783 5785 5791 CONECT 5785 5784 5792 CONECT 5786 5787 5788 5793 CONECT 5787 5786 CONECT 5788 5781 5786 CONECT 5789 5782 CONECT 5790 5783 CONECT 5791 5780 5784 CONECT 5792 5785 CONECT 5793 5786 CONECT 5794 2126 5795 5805 CONECT 5795 5794 5796 5802 CONECT 5796 5795 5797 5803 CONECT 5797 5796 5798 5804 CONECT 5798 5797 5799 5805 CONECT 5799 5798 5806 CONECT 5800 5801 5802 5807 CONECT 5801 5800 CONECT 5802 5795 5800 CONECT 5803 5796 CONECT 5804 5797 CONECT 5805 5794 5798 CONECT 5806 5799 CONECT 5807 5800 CONECT 5808 3521 5809 5819 CONECT 5809 5808 5810 5816 CONECT 5810 5809 5811 5817 CONECT 5811 5810 5812 5818 CONECT 5812 5811 5813 5819 CONECT 5813 5812 5820 CONECT 5814 5815 5816 5821 CONECT 5815 5814 CONECT 5816 5809 5814 CONECT 5817 5810 CONECT 5818 5811 CONECT 5819 5808 5812 CONECT 5820 5813 CONECT 5821 5814 CONECT 5822 3841 5823 5833 CONECT 5823 5822 5824 5830 CONECT 5824 5823 5825 5831 CONECT 5825 5824 5826 5832 CONECT 5826 5825 5827 5833 CONECT 5827 5826 5834 CONECT 5828 5829 5830 5835 CONECT 5829 5828 CONECT 5830 5823 5828 CONECT 5831 5824 CONECT 5832 5825 CONECT 5833 5822 5826 CONECT 5834 5827 CONECT 5835 5828 CONECT 5836 2230 5837 5847 CONECT 5837 5836 5838 5844 CONECT 5838 5837 5839 5845 CONECT 5839 5838 5840 5846 CONECT 5840 5839 5841 5847 CONECT 5841 5840 5848 CONECT 5842 5843 5844 5849 CONECT 5843 5842 CONECT 5844 5837 5842 CONECT 5845 5838 CONECT 5846 5839 CONECT 5847 5836 5840 CONECT 5848 5841 CONECT 5849 5842 CONECT 5850 4165 5851 5861 CONECT 5851 5850 5852 5858 CONECT 5852 5851 5853 5859 CONECT 5853 5852 5854 5860 CONECT 5854 5853 5855 5861 CONECT 5855 5854 5862 CONECT 5856 5857 5858 5863 CONECT 5857 5856 CONECT 5858 5851 5856 CONECT 5859 5852 CONECT 5860 5853 CONECT 5861 5850 5854 CONECT 5862 5855 CONECT 5863 5856 MASTER 210 0 7 7 41 0 0 6 5859 4 123 59 END