HEADER OXIDOREDUCTASE 04-NOV-25 9XJ0 TITLE CRYSTAL STRUCTURE OF SOD1 BY SERIAL SYNCHROTRON CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SUPEROXIDE DISMUTASE 1,HSOD1; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HSOD1, SOD1, SUPEROXIDE DISMUTASE (CU-ZN), OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.YAPICI,H.DEMIRCI REVDAT 1 01-APR-26 9XJ0 0 JRNL AUTH H.DEMIRCI,I.YAPICI JRNL TITL TEMPERATURE-DEPENDENT STRUCTURAL DYNAMICS OF SOD1 REVEALED JRNL TITL 2 BY SERIAL SYNCHROTRON CRYSTALLOGRAPHY JRNL REF ABANT MED J V. 14 208 2025 JRNL REFN ISSN 1305-4392 JRNL DOI 10.47493/ABANTMEDJ.1817591 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 98.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 98.5500 - 4.7900 1.00 2543 122 0.1893 0.1946 REMARK 3 2 4.7800 - 3.8000 1.00 2507 129 0.1693 0.1867 REMARK 3 3 3.8000 - 3.3200 1.00 2498 124 0.1783 0.2106 REMARK 3 4 3.3200 - 3.0100 1.00 2483 131 0.1744 0.2102 REMARK 3 5 3.0100 - 2.8000 1.00 2445 144 0.1890 0.2384 REMARK 3 6 2.8000 - 2.6300 1.00 2433 172 0.2016 0.2091 REMARK 3 7 2.6300 - 2.5000 1.00 2462 143 0.2021 0.2540 REMARK 3 8 2.5000 - 2.3900 1.00 2473 123 0.2138 0.2595 REMARK 3 9 2.3900 - 2.3000 1.00 2483 111 0.2183 0.2772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2363 REMARK 3 ANGLE : 0.569 3216 REMARK 3 CHIRALITY : 0.049 351 REMARK 3 PLANARITY : 0.003 439 REMARK 3 DIHEDRAL : 5.460 343 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6154 -4.7563 -11.3515 REMARK 3 T TENSOR REMARK 3 T11: 0.2513 T22: 0.2947 REMARK 3 T33: 0.3140 T12: -0.0284 REMARK 3 T13: 0.0048 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 2.3162 L22: 3.0765 REMARK 3 L33: 3.6668 L12: -0.1001 REMARK 3 L13: 1.1658 L23: 1.0452 REMARK 3 S TENSOR REMARK 3 S11: -0.1491 S12: -0.0506 S13: -0.0002 REMARK 3 S21: 0.1320 S22: 0.0786 S23: -0.0578 REMARK 3 S31: -0.3706 S32: 0.4168 S33: 0.0308 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9410 -6.5093 -18.8341 REMARK 3 T TENSOR REMARK 3 T11: 0.3236 T22: 0.3592 REMARK 3 T33: 0.2141 T12: 0.0188 REMARK 3 T13: 0.0271 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.2133 L22: 3.0134 REMARK 3 L33: 3.1891 L12: 0.7430 REMARK 3 L13: -0.7787 L23: -3.0067 REMARK 3 S TENSOR REMARK 3 S11: -0.2181 S12: -0.1484 S13: -0.0978 REMARK 3 S21: 0.6792 S22: 0.0294 S23: -0.2046 REMARK 3 S31: -0.4451 S32: -0.4321 S33: 0.3073 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2812 -9.9016 -9.2295 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.2957 REMARK 3 T33: 0.2600 T12: 0.0170 REMARK 3 T13: -0.0060 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.9998 L22: 2.0958 REMARK 3 L33: 1.4157 L12: -0.4607 REMARK 3 L13: -0.5642 L23: 0.2829 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: 0.0033 S13: -0.0415 REMARK 3 S21: 0.0685 S22: 0.0128 S23: 0.0123 REMARK 3 S31: 0.0975 S32: -0.0248 S33: -0.0185 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3011 -12.2720 -14.8211 REMARK 3 T TENSOR REMARK 3 T11: 0.2569 T22: 0.2676 REMARK 3 T33: 0.2625 T12: 0.0010 REMARK 3 T13: -0.0066 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.7943 L22: 1.5093 REMARK 3 L33: 1.3767 L12: -0.8709 REMARK 3 L13: -0.4378 L23: -0.0130 REMARK 3 S TENSOR REMARK 3 S11: -0.2992 S12: 0.1124 S13: -0.3186 REMARK 3 S21: 0.0751 S22: 0.1025 S23: 0.0055 REMARK 3 S31: 0.0509 S32: -0.1925 S33: 0.0320 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3173 -28.3509 -11.7008 REMARK 3 T TENSOR REMARK 3 T11: 0.3273 T22: 0.3321 REMARK 3 T33: 0.3620 T12: 0.0038 REMARK 3 T13: 0.0562 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 2.6225 L22: 3.0420 REMARK 3 L33: 0.8745 L12: -0.7569 REMARK 3 L13: -0.3398 L23: -0.4547 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: -0.1953 S13: -0.1368 REMARK 3 S21: 0.3499 S22: 0.0930 S23: -0.0321 REMARK 3 S31: -0.0754 S32: 0.0690 S33: -0.0369 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0056 -26.1699 -19.2943 REMARK 3 T TENSOR REMARK 3 T11: 0.3745 T22: 0.4775 REMARK 3 T33: 0.4840 T12: 0.0356 REMARK 3 T13: 0.0637 T23: -0.0854 REMARK 3 L TENSOR REMARK 3 L11: 1.6835 L22: 4.8699 REMARK 3 L33: 2.0474 L12: 1.8146 REMARK 3 L13: 1.6260 L23: 0.5858 REMARK 3 S TENSOR REMARK 3 S11: -0.0902 S12: 0.2226 S13: -0.3668 REMARK 3 S21: 0.4302 S22: -0.6846 S23: 0.1629 REMARK 3 S31: 0.6154 S32: -0.3466 S33: 1.0010 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9888 -21.9385 -11.1594 REMARK 3 T TENSOR REMARK 3 T11: 0.3334 T22: 0.3562 REMARK 3 T33: 0.4254 T12: 0.0169 REMARK 3 T13: -0.0041 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.9648 L22: 1.5307 REMARK 3 L33: 1.6182 L12: -0.3151 REMARK 3 L13: 0.4608 L23: -0.1414 REMARK 3 S TENSOR REMARK 3 S11: -0.0735 S12: -0.0670 S13: 0.1068 REMARK 3 S21: 0.1106 S22: 0.1017 S23: -0.2237 REMARK 3 S31: 0.0486 S32: 0.1965 S33: -0.0332 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9XJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1300065494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23556 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 99.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 49.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE, PVP REMARK 280 -K15, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.70000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.70000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 308 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 9 CE REMARK 480 ASN A 26 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 19 O HOH A 301 2.06 REMARK 500 N TRP A 32 O HOH A 301 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 310 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH B 311 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 312 DISTANCE = 8.41 ANGSTROMS REMARK 525 HOH B 313 DISTANCE = 8.43 ANGSTROMS REMARK 525 HOH B 314 DISTANCE = 8.83 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 146.9 REMARK 620 3 HIS A 120 NE2 93.4 114.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 106.3 REMARK 620 3 HIS A 80 ND1 113.9 122.6 REMARK 620 4 ASP A 83 OD1 101.1 96.0 113.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 46 ND1 REMARK 620 2 HIS B 48 NE2 135.5 REMARK 620 3 HIS B 63 NE2 89.2 107.1 REMARK 620 4 HIS B 120 NE2 90.1 102.3 138.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 63 ND1 REMARK 620 2 HIS B 71 ND1 103.1 REMARK 620 3 HIS B 80 ND1 109.9 119.4 REMARK 620 4 ASP B 83 OD1 107.0 97.1 118.5 REMARK 620 N 1 2 3 DBREF 9XJ0 A 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 9XJ0 B 1 153 UNP P00441 SODC_HUMAN 2 154 SEQRES 1 A 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 A 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 B 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 B 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 B 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 B 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 B 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 B 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 B 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 B 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 B 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 B 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 B 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 B 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET CU A 201 1 HET ZN A 202 1 HET CU B 201 1 HET ZN B 202 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 3 CU 2(CU 2+) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *24(H2 O) HELIX 1 AA1 ALA A 55 GLY A 61 5 7 HELIX 2 AA2 SER A 107 CYS A 111 5 5 HELIX 3 AA3 ALA B 55 GLY B 61 5 7 HELIX 4 AA4 SER B 107 CYS B 111 5 5 SHEET 1 AA1 8 ASP A 83 ALA A 89 0 SHEET 2 AA1 8 GLY A 41 HIS A 48 -1 N HIS A 43 O VAL A 87 SHEET 3 AA1 8 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 AA1 8 ARG A 143 VAL A 148 -1 O GLY A 147 N LEU A 117 SHEET 5 AA1 8 THR A 2 GLY A 10 -1 N LYS A 9 O CYS A 146 SHEET 6 AA1 8 GLN A 15 GLN A 22 -1 O ILE A 18 N CYS A 6 SHEET 7 AA1 8 VAL A 29 LYS A 36 -1 O TRP A 32 N ASN A 19 SHEET 8 AA1 8 ALA A 95 ASP A 101 -1 O ILE A 99 N VAL A 31 SHEET 1 AA2 6 ASP A 83 ALA A 89 0 SHEET 2 AA2 6 GLY A 41 HIS A 48 -1 N HIS A 43 O VAL A 87 SHEET 3 AA2 6 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 AA2 6 ARG A 143 VAL A 148 -1 O GLY A 147 N LEU A 117 SHEET 5 AA2 6 THR A 2 GLY A 10 -1 N LYS A 9 O CYS A 146 SHEET 6 AA2 6 GLY A 150 ILE A 151 -1 O GLY A 150 N VAL A 5 SHEET 1 AA3 5 ALA B 95 ASP B 101 0 SHEET 2 AA3 5 VAL B 29 LYS B 36 -1 N VAL B 31 O ILE B 99 SHEET 3 AA3 5 GLN B 15 GLN B 22 -1 N ASN B 19 O TRP B 32 SHEET 4 AA3 5 THR B 2 LEU B 8 -1 N ALA B 4 O PHE B 20 SHEET 5 AA3 5 GLY B 150 ILE B 151 -1 O GLY B 150 N VAL B 5 SHEET 1 AA4 4 ASP B 83 ALA B 89 0 SHEET 2 AA4 4 GLY B 41 HIS B 48 -1 N HIS B 43 O VAL B 87 SHEET 3 AA4 4 THR B 116 HIS B 120 -1 O THR B 116 N HIS B 48 SHEET 4 AA4 4 ARG B 143 VAL B 148 -1 O GLY B 147 N LEU B 117 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.03 SSBOND 2 CYS B 57 CYS B 146 1555 1555 2.04 LINK ND1 HIS A 46 CU CU A 201 1555 1555 2.46 LINK NE2 HIS A 48 CU CU A 201 1555 1555 1.94 LINK ND1 HIS A 63 ZN ZN A 202 1555 1555 2.19 LINK ND1 HIS A 71 ZN ZN A 202 1555 1555 2.21 LINK ND1 HIS A 80 ZN ZN A 202 1555 1555 2.22 LINK OD1 ASP A 83 ZN ZN A 202 1555 1555 1.90 LINK NE2 HIS A 120 CU CU A 201 1555 1555 1.90 LINK ND1 HIS B 46 CU CU B 201 1555 1555 2.50 LINK NE2 HIS B 48 CU CU B 201 1555 1555 2.12 LINK NE2 HIS B 63 CU CU B 201 1555 1555 2.43 LINK ND1 HIS B 63 ZN ZN B 202 1555 1555 2.19 LINK ND1 HIS B 71 ZN ZN B 202 1555 1555 2.25 LINK ND1 HIS B 80 ZN ZN B 202 1555 1555 2.23 LINK OD1 ASP B 83 ZN ZN B 202 1555 1555 1.85 LINK NE2 HIS B 120 CU CU B 201 1555 1555 2.26 CRYST1 113.800 113.800 71.400 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008787 0.005073 0.000000 0.00000 SCALE2 0.000000 0.010147 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014006 0.00000 CONECT 349 2311 CONECT 369 2311 CONECT 431 1113 CONECT 467 2312 CONECT 537 2312 CONECT 608 2312 CONECT 629 2312 CONECT 933 2311 CONECT 1113 431 CONECT 1520 2313 CONECT 1540 2313 CONECT 1602 2263 CONECT 1638 2314 CONECT 1641 2313 CONECT 1708 2314 CONECT 1779 2314 CONECT 1800 2314 CONECT 2083 2313 CONECT 2263 1602 CONECT 2311 349 369 933 CONECT 2312 467 537 608 629 CONECT 2313 1520 1540 1641 2083 CONECT 2314 1638 1708 1779 1800 MASTER 397 0 4 4 23 0 0 6 2248 2 23 24 END