HEADER OXIDOREDUCTASE 04-NOV-25 9XJI TITLE CRYOGENIC STRUCTURE OF SOD1, DETERMINED AS THE SSX COUNTERPART COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SUPEROXIDE DISMUTASE 1,HSOD1; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HSOD1, SOD1, SUPEROXIDE DISMUTASE (CU-ZN), OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.YAPICI,H.DEMIRCI REVDAT 1 01-APR-26 9XJI 0 JRNL AUTH H.DEMIRCI,I.YAPICI JRNL TITL TEMPERATURE-DEPENDENT STRUCTURAL DYNAMICS OF SOD1 REVEALED JRNL TITL 2 BY SERIAL SYNCHROTRON CRYSTALLOGRAPHY JRNL REF ABANT MED J V. 14 208 2025 JRNL REFN ISSN 1305-4392 JRNL DOI 10.47493/ABANTMEDJ.1817591 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.9 REMARK 3 NUMBER OF REFLECTIONS : 17790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7600 - 4.3100 0.99 3307 195 0.1667 0.1682 REMARK 3 2 4.3100 - 3.4200 0.98 3182 207 0.2038 0.2585 REMARK 3 3 3.4200 - 2.9900 0.92 3056 137 0.2853 0.2858 REMARK 3 4 2.9900 - 2.7100 0.83 2702 144 0.3258 0.3569 REMARK 3 5 2.7100 - 2.5200 0.75 2453 114 0.4046 0.4641 REMARK 3 6 2.5200 - 2.3700 0.67 2184 109 0.4333 0.4786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2432 REMARK 3 ANGLE : 0.614 3323 REMARK 3 CHIRALITY : 0.049 363 REMARK 3 PLANARITY : 0.004 456 REMARK 3 DIHEDRAL : 12.357 895 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3171 25.5107 -14.3712 REMARK 3 T TENSOR REMARK 3 T11: 0.7011 T22: 0.4130 REMARK 3 T33: 1.2741 T12: -0.0063 REMARK 3 T13: -0.0498 T23: 0.0611 REMARK 3 L TENSOR REMARK 3 L11: 8.7214 L22: 7.5475 REMARK 3 L33: 9.0867 L12: 2.4997 REMARK 3 L13: -5.0384 L23: -1.5245 REMARK 3 S TENSOR REMARK 3 S11: 0.6080 S12: 0.3538 S13: 1.2843 REMARK 3 S21: 0.1112 S22: 0.5752 S23: 2.1660 REMARK 3 S31: 0.8497 S32: -1.1136 S33: -1.2729 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8411 21.0666 -5.9535 REMARK 3 T TENSOR REMARK 3 T11: 0.6390 T22: 0.7350 REMARK 3 T33: 1.1058 T12: 0.0250 REMARK 3 T13: 0.1442 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 5.4392 L22: 9.4659 REMARK 3 L33: 8.7063 L12: -2.4399 REMARK 3 L13: 2.2899 L23: -3.2625 REMARK 3 S TENSOR REMARK 3 S11: -0.5156 S12: -0.8553 S13: 0.4320 REMARK 3 S21: 0.6495 S22: 0.4867 S23: 1.5252 REMARK 3 S31: -1.7656 S32: -1.3566 S33: -0.1623 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7683 20.7580 -15.2429 REMARK 3 T TENSOR REMARK 3 T11: 0.5251 T22: 0.4369 REMARK 3 T33: 1.0465 T12: -0.0431 REMARK 3 T13: -0.0592 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 3.5835 L22: 6.8505 REMARK 3 L33: 3.3842 L12: 0.5727 REMARK 3 L13: -0.5625 L23: -0.5139 REMARK 3 S TENSOR REMARK 3 S11: -0.2159 S12: -0.3149 S13: 1.4566 REMARK 3 S21: 0.0559 S22: -0.1768 S23: -0.6957 REMARK 3 S31: -0.9549 S32: 0.2895 S33: 0.2943 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9721 12.3648 -2.7647 REMARK 3 T TENSOR REMARK 3 T11: 0.8755 T22: 0.8674 REMARK 3 T33: 0.3717 T12: -0.1267 REMARK 3 T13: -0.1790 T23: -0.0507 REMARK 3 L TENSOR REMARK 3 L11: 8.7028 L22: 9.4957 REMARK 3 L33: 0.8822 L12: -7.5083 REMARK 3 L13: 2.1680 L23: -2.7994 REMARK 3 S TENSOR REMARK 3 S11: 0.6548 S12: 0.8750 S13: 1.4172 REMARK 3 S21: 2.0197 S22: -0.2760 S23: -1.4090 REMARK 3 S31: 1.2775 S32: -0.7350 S33: -0.1264 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0471 16.6274 -8.6793 REMARK 3 T TENSOR REMARK 3 T11: 0.3595 T22: 0.4179 REMARK 3 T33: 0.7520 T12: -0.0176 REMARK 3 T13: 0.0311 T23: -0.0703 REMARK 3 L TENSOR REMARK 3 L11: 6.4729 L22: 6.9786 REMARK 3 L33: 5.9121 L12: -4.3265 REMARK 3 L13: 2.5828 L23: -6.4248 REMARK 3 S TENSOR REMARK 3 S11: 0.1678 S12: -0.5770 S13: 0.6898 REMARK 3 S21: 0.4126 S22: 0.0101 S23: 0.5075 REMARK 3 S31: 0.3351 S32: -0.4114 S33: -0.2582 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2648 11.1083 -15.0190 REMARK 3 T TENSOR REMARK 3 T11: 0.4624 T22: 0.3805 REMARK 3 T33: 0.9759 T12: 0.0270 REMARK 3 T13: -0.1326 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 4.4518 L22: 1.8709 REMARK 3 L33: 2.2584 L12: 0.2682 REMARK 3 L13: 0.0896 L23: -0.7789 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: -0.0846 S13: 1.1617 REMARK 3 S21: 0.5096 S22: -0.0979 S23: -2.7492 REMARK 3 S31: -0.0278 S32: 0.3071 S33: -0.0076 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7789 19.8571 -14.1339 REMARK 3 T TENSOR REMARK 3 T11: 0.5181 T22: 0.4852 REMARK 3 T33: 1.2431 T12: -0.0366 REMARK 3 T13: -0.0137 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 3.8698 L22: 7.2507 REMARK 3 L33: 4.5076 L12: 0.9165 REMARK 3 L13: -0.0174 L23: 0.6114 REMARK 3 S TENSOR REMARK 3 S11: 0.2418 S12: -0.0088 S13: 1.3106 REMARK 3 S21: 0.1010 S22: -0.5276 S23: -1.3102 REMARK 3 S31: -0.3938 S32: 0.4671 S33: 0.0252 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1880 39.5277 -14.7908 REMARK 3 T TENSOR REMARK 3 T11: 0.9111 T22: 0.6574 REMARK 3 T33: 1.7116 T12: 0.1065 REMARK 3 T13: -0.0425 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 5.3977 L22: 7.1837 REMARK 3 L33: 7.5497 L12: 1.9486 REMARK 3 L13: -0.7560 L23: -3.4510 REMARK 3 S TENSOR REMARK 3 S11: 0.2383 S12: 0.4584 S13: 1.1580 REMARK 3 S21: 0.3632 S22: -0.1145 S23: -0.7872 REMARK 3 S31: -1.2156 S32: 0.4292 S33: -0.2329 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5505 44.4743 -6.8867 REMARK 3 T TENSOR REMARK 3 T11: 1.1911 T22: 0.8238 REMARK 3 T33: 2.3695 T12: -0.0667 REMARK 3 T13: -0.4268 T23: -0.3083 REMARK 3 L TENSOR REMARK 3 L11: 4.7675 L22: 9.5873 REMARK 3 L33: 7.1838 L12: -0.4522 REMARK 3 L13: -1.3901 L23: 7.6473 REMARK 3 S TENSOR REMARK 3 S11: 1.5007 S12: -0.8030 S13: 1.3588 REMARK 3 S21: 1.1115 S22: 1.4561 S23: -2.3914 REMARK 3 S31: 2.6579 S32: 1.1146 S33: -3.0427 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4904 44.7042 -15.8796 REMARK 3 T TENSOR REMARK 3 T11: 0.9669 T22: 0.7758 REMARK 3 T33: 2.4229 T12: 0.1081 REMARK 3 T13: -0.0259 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 4.6145 L22: 4.7150 REMARK 3 L33: 3.1000 L12: 3.8911 REMARK 3 L13: -2.0437 L23: -3.5717 REMARK 3 S TENSOR REMARK 3 S11: 0.7884 S12: -0.1443 S13: 0.5344 REMARK 3 S21: -0.4634 S22: -0.5751 S23: 1.1430 REMARK 3 S31: -0.3578 S32: 0.0831 S33: -0.1790 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3973 53.1744 -3.3541 REMARK 3 T TENSOR REMARK 3 T11: 1.3361 T22: 0.9348 REMARK 3 T33: 2.4783 T12: 0.2544 REMARK 3 T13: 0.1914 T23: -0.2165 REMARK 3 L TENSOR REMARK 3 L11: 1.5440 L22: 9.6185 REMARK 3 L33: 2.0073 L12: -3.8010 REMARK 3 L13: 1.0170 L23: -2.1914 REMARK 3 S TENSOR REMARK 3 S11: 0.5883 S12: 0.4623 S13: -0.0487 REMARK 3 S21: 0.7399 S22: 0.4977 S23: 0.7200 REMARK 3 S31: -0.5842 S32: -0.1519 S33: -1.0791 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3841 48.4735 -9.2441 REMARK 3 T TENSOR REMARK 3 T11: 1.1456 T22: 0.7332 REMARK 3 T33: 2.3395 T12: -0.0926 REMARK 3 T13: 0.0997 T23: -0.1698 REMARK 3 L TENSOR REMARK 3 L11: 1.8238 L22: 5.6135 REMARK 3 L33: 2.4515 L12: -0.7814 REMARK 3 L13: 1.0798 L23: 2.5513 REMARK 3 S TENSOR REMARK 3 S11: 0.6007 S12: -0.7001 S13: 2.4436 REMARK 3 S21: 0.9300 S22: -0.1936 S23: -0.3605 REMARK 3 S31: -1.4102 S32: 0.8666 S33: -0.2378 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3057 53.8432 -15.2985 REMARK 3 T TENSOR REMARK 3 T11: 1.0019 T22: 0.4631 REMARK 3 T33: 3.6141 T12: 0.1460 REMARK 3 T13: -0.0484 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 2.0505 L22: 6.7607 REMARK 3 L33: 3.1606 L12: -2.9088 REMARK 3 L13: -2.0818 L23: 1.4625 REMARK 3 S TENSOR REMARK 3 S11: 0.3261 S12: 0.1925 S13: 1.9767 REMARK 3 S21: -0.6568 S22: 0.1322 S23: 0.4764 REMARK 3 S31: -0.5112 S32: 1.1735 S33: -0.2311 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8525 45.0912 -14.5095 REMARK 3 T TENSOR REMARK 3 T11: 0.9238 T22: 0.1416 REMARK 3 T33: 3.1588 T12: -0.2191 REMARK 3 T13: 0.0079 T23: 0.1747 REMARK 3 L TENSOR REMARK 3 L11: 0.1316 L22: 6.3520 REMARK 3 L33: 3.2471 L12: 0.7021 REMARK 3 L13: -0.6301 L23: -2.5188 REMARK 3 S TENSOR REMARK 3 S11: 1.2951 S12: 0.1918 S13: 1.0959 REMARK 3 S21: -0.6359 S22: -0.1366 S23: 1.6936 REMARK 3 S31: -0.1024 S32: 0.3305 S33: -0.7670 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9XJI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1300065537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23325 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 97.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.01 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE, PVP REMARK 280 -K15, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.05850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.05850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.05850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 126 CD1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 100 OE2 REMARK 480 LYS A 128 NZ REMARK 480 LEU B 8 CA CB CG CD1 CD2 REMARK 480 ILE B 99 N CA C O CB CG1 CG2 REMARK 480 ILE B 99 CD1 REMARK 480 CYS B 111 CA CB SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS B 80 OD2 ASP B 83 2.04 REMARK 500 ND1 HIS A 71 OD2 ASP A 83 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 58.04 -101.25 REMARK 500 ASP A 90 -169.60 -76.00 REMARK 500 ASP A 90 -167.68 -77.84 REMARK 500 SER A 98 47.04 -141.41 REMARK 500 SER A 98 46.64 -141.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 321 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH B 306 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 307 DISTANCE = 7.68 ANGSTROMS REMARK 525 HOH B 308 DISTANCE = 8.28 ANGSTROMS REMARK 525 HOH B 309 DISTANCE = 8.54 ANGSTROMS REMARK 525 HOH B 310 DISTANCE = 13.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 48 NE2 147.7 REMARK 620 3 HIS A 120 NE2 96.0 114.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 ND1 REMARK 620 2 HIS A 71 ND1 112.7 REMARK 620 3 HIS A 80 ND1 121.6 114.5 REMARK 620 4 ASP A 83 OD1 100.9 114.3 89.3 REMARK 620 5 ASP A 83 OD2 157.4 63.4 77.2 64.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 46 ND1 REMARK 620 2 HIS B 48 NE2 163.2 REMARK 620 3 HIS B 63 NE2 83.1 107.4 REMARK 620 4 HIS B 120 NE2 87.9 98.5 116.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 63 ND1 REMARK 620 2 HIS B 71 ND1 118.4 REMARK 620 3 HIS B 80 ND1 120.8 118.1 REMARK 620 4 ASP B 83 OD1 94.1 106.6 85.8 REMARK 620 5 ASP B 83 OD2 159.7 71.0 59.8 65.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9XJ0 RELATED DB: PDB DBREF 9XJI A 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 9XJI B 1 153 UNP P00441 SODC_HUMAN 2 154 SEQRES 1 A 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 A 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 A 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 A 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 A 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 A 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 A 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 A 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 A 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 A 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 A 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 A 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 B 153 ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY PRO SEQRES 2 B 153 VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN SEQRES 3 B 153 GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR SEQRES 4 B 153 GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP SEQRES 5 B 153 ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE ASN SEQRES 6 B 153 PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU GLU SEQRES 7 B 153 ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP LYS SEQRES 8 B 153 ASP GLY VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SEQRES 9 B 153 SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR LEU SEQRES 10 B 153 VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY GLY SEQRES 11 B 153 ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER ARG SEQRES 12 B 153 LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN HET CU A 201 1 HET ZN A 202 1 HET CU B 201 1 HET ZN B 202 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 3 CU 2(CU 2+) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 HOH *31(H2 O) HELIX 1 AA1 ALA A 55 GLY A 61 5 7 HELIX 2 AA2 GLU A 133 GLY A 138 1 6 HELIX 3 AA3 ALA B 55 GLY B 61 5 7 HELIX 4 AA4 SER B 107 CYS B 111 5 5 SHEET 1 AA1 5 SER A 98 ASP A 101 0 SHEET 2 AA1 5 VAL A 29 LYS A 36 -1 N VAL A 29 O ASP A 101 SHEET 3 AA1 5 GLN A 15 GLN A 22 -1 N ASN A 19 O TRP A 32 SHEET 4 AA1 5 THR A 2 LEU A 8 -1 N THR A 2 O GLN A 22 SHEET 5 AA1 5 GLY A 150 ILE A 151 -1 O GLY A 150 N VAL A 5 SHEET 1 AA2 4 ASP A 83 ALA A 89 0 SHEET 2 AA2 4 GLY A 41 HIS A 48 -1 N GLY A 41 O ALA A 89 SHEET 3 AA2 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 AA2 4 ARG A 143 VAL A 148 -1 O ALA A 145 N VAL A 119 SHEET 1 AA3 5 SER B 98 ASP B 101 0 SHEET 2 AA3 5 VAL B 29 LYS B 36 -1 N VAL B 31 O ILE B 99 SHEET 3 AA3 5 GLN B 15 GLN B 22 -1 N ASN B 19 O TRP B 32 SHEET 4 AA3 5 THR B 2 LEU B 8 -1 N THR B 2 O GLN B 22 SHEET 5 AA3 5 GLY B 150 ILE B 151 -1 O GLY B 150 N VAL B 5 SHEET 1 AA4 4 ASP B 83 ALA B 89 0 SHEET 2 AA4 4 GLY B 41 HIS B 48 -1 N HIS B 43 O VAL B 87 SHEET 3 AA4 4 THR B 116 HIS B 120 -1 O THR B 116 N HIS B 48 SHEET 4 AA4 4 ARG B 143 VAL B 148 -1 O GLY B 147 N LEU B 117 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.03 SSBOND 2 CYS B 57 CYS B 146 1555 1555 2.03 LINK ND1 HIS A 46 CU CU A 201 1555 1555 1.94 LINK NE2 HIS A 48 CU CU A 201 1555 1555 1.95 LINK ND1 HIS A 63 ZN ZN A 202 1555 1555 2.01 LINK ND1 HIS A 71 ZN ZN A 202 1555 1555 2.00 LINK ND1 HIS A 80 ZN ZN A 202 1555 1555 1.97 LINK OD1 ASP A 83 ZN ZN A 202 1555 1555 1.94 LINK OD2 ASP A 83 ZN ZN A 202 1555 1555 2.10 LINK NE2 HIS A 120 CU CU A 201 1555 1555 1.97 LINK ND1 HIS B 46 CU CU B 201 1555 1555 2.10 LINK NE2 HIS B 48 CU CU B 201 1555 1555 2.08 LINK NE2 HIS B 63 CU CU B 201 1555 1555 2.49 LINK ND1 HIS B 63 ZN ZN B 202 1555 1555 2.08 LINK ND1 HIS B 71 ZN ZN B 202 1555 1555 2.11 LINK ND1 HIS B 80 ZN ZN B 202 1555 1555 2.02 LINK OD1 ASP B 83 ZN ZN B 202 1555 1555 1.95 LINK OD2 ASP B 83 ZN ZN B 202 1555 1555 2.07 LINK NE2 HIS B 120 CU CU B 201 1555 1555 2.01 CRYST1 112.610 112.610 70.117 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008880 0.005127 0.000000 0.00000 SCALE2 0.000000 0.010254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014262 0.00000 CONECT 366 2371 CONECT 386 2371 CONECT 448 1123 CONECT 491 2372 CONECT 561 2372 CONECT 632 2372 CONECT 653 2372 CONECT 654 2372 CONECT 944 2371 CONECT 1123 448 CONECT 1544 2373 CONECT 1564 2373 CONECT 1626 2323 CONECT 1669 2374 CONECT 1672 2373 CONECT 1739 2374 CONECT 1810 2374 CONECT 1831 2374 CONECT 1832 2374 CONECT 2143 2373 CONECT 2323 1626 CONECT 2371 366 386 944 CONECT 2372 491 561 632 653 CONECT 2372 654 CONECT 2373 1544 1564 1672 2143 CONECT 2374 1669 1739 1810 1831 CONECT 2374 1832 MASTER 530 0 4 4 18 0 0 6 2254 2 27 24 END