data_9XV9 # _entry.id 9XV9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9XV9 pdb_00009xv9 10.2210/pdb9xv9/pdb WWPDB D_1300066420 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-01-28 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9XV9 _pdbx_database_status.recvd_initial_deposition_date 2025-11-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email j.kondo@sophia.ac.jp _pdbx_contact_author.name_first Jiro _pdbx_contact_author.name_last Kondo _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5682-3685 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ruck, V.' 1 ? 'Kanazawa, H.' 2 ? 'Huang, Z.' 3 ? 'Kondo, J.' 4 ? 'Vosch, T.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Inorg Chem Front' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2052-1553 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Bridging the gap: thymine segments to create single-strand versions of DNA2-[Ag16Cl2]8+' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/D5QI02482J _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ruck, V.' 1 ? primary 'Kanazawa, H.' 2 ? primary 'Huang, Z.' 3 ? primary 'Mollerup, C.B.' 4 ? primary 'Lo Leggio, L.' 5 ? primary 'Kondo, J.' 6 ? primary 'Vosch, T.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*AP*CP*CP*TP*AP*GP*CP*GP*AP*TP*CP*AP*CP*CP*TP*AP*GP*CP*GP*A)-3') ; 7593.911 2 ? ? ? ? 2 non-polymer syn 'SILVER ION' 107.868 32 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 4 water nat water 18.015 35 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DC)(DA)(DC)(DC)(DT)(DA)(DG)(DC)(DG)(DA)(DT)(DT)(DT)(DT)(DT)(DC)(DA)(DC)(DC)(DT) (DA)(DG)(DC)(DG)(DA) ; _entity_poly.pdbx_seq_one_letter_code_can CACCTAGCGATTTTTCACCTAGCGA _entity_poly.pdbx_strand_id A,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SILVER ION' AG 3 'CHLORIDE ION' CL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DC n 1 5 DT n 1 6 DA n 1 7 DG n 1 8 DC n 1 9 DG n 1 10 DA n 1 11 DT n 1 12 DT n 1 13 DT n 1 14 DT n 1 15 DT n 1 16 DC n 1 17 DA n 1 18 DC n 1 19 DC n 1 20 DT n 1 21 DA n 1 22 DG n 1 23 DC n 1 24 DG n 1 25 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 25 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AG non-polymer . 'SILVER ION' ? 'Ag 1' 107.868 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DT 11 11 ? ? ? A . n A 1 12 DT 12 12 ? ? ? A . n A 1 13 DT 13 13 ? ? ? A . n A 1 14 DT 14 14 ? ? ? A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DC 16 16 16 DC DC A . n A 1 17 DA 17 17 17 DA DA A . n A 1 18 DC 18 18 18 DC DC A . n A 1 19 DC 19 19 19 DC DC A . n A 1 20 DT 20 20 20 DT DT A . n A 1 21 DA 21 21 21 DA DA A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DC 23 23 23 DC DC A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DA 25 25 25 DA DA A . n B 1 1 DC 1 1 1 DC DC C . n B 1 2 DA 2 2 2 DA DA C . n B 1 3 DC 3 3 3 DC DC C . n B 1 4 DC 4 4 4 DC DC C . n B 1 5 DT 5 5 5 DT DT C . n B 1 6 DA 6 6 6 DA DA C . n B 1 7 DG 7 7 7 DG DG C . n B 1 8 DC 8 8 8 DC DC C . n B 1 9 DG 9 9 9 DG DG C . n B 1 10 DA 10 10 10 DA DA C . n B 1 11 DT 11 11 ? ? ? C . n B 1 12 DT 12 12 ? ? ? C . n B 1 13 DT 13 13 ? ? ? C . n B 1 14 DT 14 14 ? ? ? C . n B 1 15 DT 15 15 15 DT DT C . n B 1 16 DC 16 16 16 DC DC C . n B 1 17 DA 17 17 17 DA DA C . n B 1 18 DC 18 18 18 DC DC C . n B 1 19 DC 19 19 19 DC DC C . n B 1 20 DT 20 20 20 DT DT C . n B 1 21 DA 21 21 21 DA DA C . n B 1 22 DG 22 22 22 DG DG C . n B 1 23 DC 23 23 23 DC DC C . n B 1 24 DG 24 24 24 DG DG C . n B 1 25 DA 25 25 25 DA DA C . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 AG ? ? AG ? ? 'SUBJECT OF INVESTIGATION' ? 2 CL ? ? CL ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AG 1 101 1 AG AG A . D 2 AG 1 102 2 AG AG A . E 2 AG 1 103 3 AG AG A . F 2 AG 1 104 4 AG AG A . G 2 AG 1 105 5 AG AG A . H 2 AG 1 106 6 AG AG A . I 2 AG 1 107 7 AG AG A . J 2 AG 1 108 8 AG AG A . K 2 AG 1 109 9 AG AG A . L 2 AG 1 110 10 AG AG A . M 2 AG 1 111 11 AG AG A . N 2 AG 1 112 12 AG AG A . O 2 AG 1 113 13 AG AG A . P 2 AG 1 114 14 AG AG A . Q 2 AG 1 115 15 AG AG A . R 2 AG 1 116 16 AG AG A . S 3 CL 1 117 17 CL CL A . T 3 CL 1 118 18 CL CL A . U 2 AG 1 101 1 AG AG C . V 2 AG 1 102 2 AG AG C . W 2 AG 1 103 3 AG AG C . X 2 AG 1 104 4 AG AG C . Y 2 AG 1 105 5 AG AG C . Z 2 AG 1 106 6 AG AG C . AA 2 AG 1 107 7 AG AG C . BA 2 AG 1 108 8 AG AG C . CA 2 AG 1 109 9 AG AG C . DA 2 AG 1 110 10 AG AG C . EA 2 AG 1 111 11 AG AG C . FA 2 AG 1 112 12 AG AG C . GA 2 AG 1 113 13 AG AG C . HA 2 AG 1 114 14 AG AG C . IA 2 AG 1 115 15 AG AG C . JA 2 AG 1 116 16 AG AG C . KA 3 CL 1 117 17 CL CL C . LA 3 CL 1 118 18 CL CL C . MA 4 HOH 1 201 33 HOH HOH A . MA 4 HOH 2 202 18 HOH HOH A . MA 4 HOH 3 203 21 HOH HOH A . MA 4 HOH 4 204 16 HOH HOH A . MA 4 HOH 5 205 15 HOH HOH A . MA 4 HOH 6 206 20 HOH HOH A . MA 4 HOH 7 207 5 HOH HOH A . MA 4 HOH 8 208 34 HOH HOH A . MA 4 HOH 9 209 4 HOH HOH A . MA 4 HOH 10 210 7 HOH HOH A . MA 4 HOH 11 211 19 HOH HOH A . MA 4 HOH 12 212 1 HOH HOH A . MA 4 HOH 13 213 23 HOH HOH A . MA 4 HOH 14 214 22 HOH HOH A . MA 4 HOH 15 215 8 HOH HOH A . MA 4 HOH 16 216 10 HOH HOH A . MA 4 HOH 17 217 17 HOH HOH A . MA 4 HOH 18 218 32 HOH HOH A . MA 4 HOH 19 219 12 HOH HOH A . NA 4 HOH 1 201 35 HOH HOH C . NA 4 HOH 2 202 29 HOH HOH C . NA 4 HOH 3 203 9 HOH HOH C . NA 4 HOH 4 204 13 HOH HOH C . NA 4 HOH 5 205 25 HOH HOH C . NA 4 HOH 6 206 24 HOH HOH C . NA 4 HOH 7 207 14 HOH HOH C . NA 4 HOH 8 208 6 HOH HOH C . NA 4 HOH 9 209 3 HOH HOH C . NA 4 HOH 10 210 30 HOH HOH C . NA 4 HOH 11 211 2 HOH HOH C . NA 4 HOH 12 212 11 HOH HOH C . NA 4 HOH 13 213 27 HOH HOH C . NA 4 HOH 14 214 28 HOH HOH C . NA 4 HOH 15 215 26 HOH HOH C . NA 4 HOH 16 216 31 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' ? 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . ? 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? Sir2014 ? ? ? 2019 ? 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? AutoSol ? ? ? . ? 6 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . ? 7 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9XV9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 77.045 _cell.length_a_esd ? _cell.length_b 77.045 _cell.length_b_esd ? _cell.length_c 21.512 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9XV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 75 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9XV9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'polyethylene glycol 3350, spermine, potassium nitrate, and 3-(N-morpholino)propanesulfonic acid' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 X CdTe 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2025-09-09 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97761 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'MAX IV BEAMLINE MicroMAX' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97761 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline MicroMAX _diffrn_source.pdbx_synchrotron_site 'MAX IV' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9XV9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 38.52 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16707 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.98 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.31 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.096 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.00 2.05 ? ? ? ? ? ? 1214 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.303 ? ? 1 1 0.981 ? ? ? ? 0.28 ? ? ? ? ? ? ? ? ? 2.05 2.11 ? ? ? ? ? ? 1225 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.242 ? ? 2 1 0.988 ? ? ? ? 0.224 ? ? ? ? ? ? ? ? ? 2.11 2.17 ? ? ? ? ? ? 1176 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.193 ? ? 3 1 0.991 ? ? ? ? 0.178 ? ? ? ? ? ? ? ? ? 2.17 2.23 ? ? ? ? ? ? 1098 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.182 ? ? 4 1 0.989 ? ? ? ? 0.169 ? ? ? ? ? ? ? ? ? 2.23 2.31 ? ? ? ? ? ? 1114 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.143 ? ? 5 1 0.992 ? ? ? ? 0.133 ? ? ? ? ? ? ? ? ? 2.31 2.39 ? ? ? ? ? ? 1102 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.129 ? ? 6 1 0.994 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? ? 2.39 2.48 ? ? ? ? ? ? 980 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.113 ? ? 7 1 0.997 ? ? ? ? 0.105 ? ? ? ? ? ? ? ? ? 2.48 2.58 ? ? ? ? ? ? 1030 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.109 ? ? 8 1 0.994 ? ? ? ? 0.101 ? ? ? ? ? ? ? ? ? 2.58 2.69 ? ? ? ? ? ? 952 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.1 ? ? 9 1 0.995 ? ? ? ? 0.093 ? ? ? ? ? ? ? ? ? 2.69 2.82 ? ? ? ? ? ? 882 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.099 ? ? 10 1 0.995 ? ? ? ? 0.092 ? ? ? ? ? ? ? ? ? 2.82 2.98 ? ? ? ? ? ? 859 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.104 ? ? 11 1 0.995 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? ? 2.98 3.16 ? ? ? ? ? ? 846 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.106 ? ? 12 1 0.996 ? ? ? ? 0.098 ? ? ? ? ? ? ? ? ? 3.16 3.38 ? ? ? ? ? ? 749 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.099 ? ? 13 1 0.996 ? ? ? ? 0.092 ? ? ? ? ? ? ? ? ? 3.38 3.65 ? ? ? ? ? ? 739 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.086 ? ? 14 1 0.996 ? ? ? ? 0.08 ? ? ? ? ? ? ? ? ? 3.65 3.99 ? ? ? ? ? ? 657 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.078 ? ? 15 1 0.997 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? ? 3.99 4.47 ? ? ? ? ? ? 593 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.075 ? ? 16 1 0.997 ? ? ? ? 0.069 ? ? ? ? ? ? ? ? ? 4.47 5.16 ? ? ? ? ? ? 521 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.07 ? ? 17 1 0.997 ? ? ? ? 0.065 ? ? ? ? ? ? ? ? ? 5.16 6.32 ? ? ? ? ? ? 448 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.065 ? ? 18 1 0.997 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? ? 6.32 8.93 ? ? ? ? ? ? 343 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.047 ? ? 19 1 0.996 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? ? 8.93 38.52 ? ? ? ? ? ? 179 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.051 ? ? 20 1 0.996 ? ? ? ? 0.046 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9XV9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 38.52 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16691 _refine.ls_number_reflns_R_free 1641 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.27 _refine.ls_percent_reflns_R_free 9.83 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1375 _refine.ls_R_factor_R_free 0.1616 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1348 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.94 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 17.11 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.15 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 846 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 35 _refine_hist.number_atoms_total 917 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 38.52 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 946 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.612 ? 1448 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 33.378 ? 406 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.151 ? 166 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.012 ? 42 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.00 2.06 . . 134 1237 98.00 . . . . 0.1569 . . . . . . . . . . . . . . . 0.1435 'X-RAY DIFFRACTION' 2.06 2.12 . . 144 1248 100.00 . . . . 0.1205 . . . . . . . . . . . . . . . 0.1254 'X-RAY DIFFRACTION' 2.12 2.20 . . 140 1249 98.00 . . . . 0.1171 . . . . . . . . . . . . . . . 0.1195 'X-RAY DIFFRACTION' 2.20 2.29 . . 139 1254 100.00 . . . . 0.1022 . . . . . . . . . . . . . . . 0.1340 'X-RAY DIFFRACTION' 2.29 2.39 . . 138 1276 99.00 . . . . 0.1056 . . . . . . . . . . . . . . . 0.1270 'X-RAY DIFFRACTION' 2.39 2.52 . . 141 1200 100.00 . . . . 0.1132 . . . . . . . . . . . . . . . 0.1054 'X-RAY DIFFRACTION' 2.52 2.67 . . 134 1312 100.00 . . . . 0.1136 . . . . . . . . . . . . . . . 0.1712 'X-RAY DIFFRACTION' 2.67 2.88 . . 120 1231 99.00 . . . . 0.1377 . . . . . . . . . . . . . . . 0.1527 'X-RAY DIFFRACTION' 2.88 3.17 . . 135 1286 100.00 . . . . 0.1702 . . . . . . . . . . . . . . . 0.1977 'X-RAY DIFFRACTION' 3.17 3.63 . . 134 1265 100.00 . . . . 0.1862 . . . . . . . . . . . . . . . 0.2653 'X-RAY DIFFRACTION' 3.63 4.57 . . 139 1250 100.00 . . . . 0.1734 . . . . . . . . . . . . . . . 0.2206 'X-RAY DIFFRACTION' 4.57 38.52 . . 143 1242 99.00 . . . . 0.1192 . . . . . . . . . . . . . . . 0.1483 # _struct.entry_id 9XV9 _struct.title 'Crystal structure of single-strand DNA-stabilized Ag16 nanocluster: T5 linker' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9XV9 _struct_keywords.text 'DNA, silver, nanocluster, emitter' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 3 ? T N N 3 ? U N N 2 ? V N N 2 ? W N N 2 ? X N N 2 ? Y N N 2 ? Z N N 2 ? AA N N 2 ? BA N N 2 ? CA N N 2 ? DA N N 2 ? EA N N 2 ? FA N N 2 ? GA N N 2 ? HA N N 2 ? IA N N 2 ? JA N N 2 ? KA N N 3 ? LA N N 3 ? MA N N 4 ? NA N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9XV9 _struct_ref.pdbx_db_accession 9XV9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9XV9 A 1 ? 25 ? 9XV9 1 ? 25 ? 1 25 2 1 9XV9 C 1 ? 25 ? 9XV9 1 ? 25 ? 1 25 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,MA 2 1 B,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,NA # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 1 N3 ? ? ? 1_555 P AG . AG ? ? A DC 1 A AG 114 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc2 metalc ? ? A DC 1 O2 ? ? ? 1_555 Q AG . AG ? ? A DC 1 A AG 115 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc3 metalc ? ? A DA 2 N1 ? ? ? 1_555 R AG . AG ? ? A DA 2 A AG 116 1_555 ? ? ? ? ? ? ? 2.449 ? ? metalc4 metalc ? ? A DC 3 N3 ? ? ? 1_555 Q AG . AG ? ? A DC 3 A AG 115 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc5 metalc ? ? A DC 4 O2 ? ? ? 1_555 L AG . AG ? ? A DC 4 A AG 110 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc6 metalc ? ? A DC 4 N3 ? ? ? 1_555 N AG . AG ? ? A DC 4 A AG 112 1_555 ? ? ? ? ? ? ? 2.428 ? ? metalc7 metalc ? ? A DC 4 O2 ? ? ? 1_555 O AG . AG ? ? A DC 4 A AG 113 1_555 ? ? ? ? ? ? ? 2.493 ? ? metalc8 metalc ? ? A DA 6 N7 ? ? ? 1_555 C AG . AG ? ? A DA 6 A AG 101 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc9 metalc ? ? A DA 6 OP2 ? ? ? 1_555 D AG . AG ? ? A DA 6 A AG 102 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc10 metalc ? ? A DA 6 OP1 ? ? ? 1_555 F AG . AG ? ? A DA 6 A AG 104 1_555 ? ? ? ? ? ? ? 2.455 ? ? metalc11 metalc ? ? A DG 7 O6 ? ? ? 1_555 C AG . AG ? ? A DG 7 A AG 101 1_555 ? ? ? ? ? ? ? 2.207 ? ? metalc12 metalc ? ? A DG 7 N7 ? ? ? 1_555 F AG . AG ? ? A DG 7 A AG 104 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc13 metalc ? ? A DC 8 O2 ? ? ? 1_555 H AG . AG ? ? A DC 8 A AG 106 1_555 ? ? ? ? ? ? ? 2.680 ? ? metalc14 metalc ? ? A DC 8 N3 ? ? ? 1_555 I AG . AG ? ? A DC 8 A AG 107 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc15 metalc ? ? A DG 9 N1 ? ? ? 1_555 K AG . AG ? ? A DG 9 A AG 109 1_555 ? ? ? ? ? ? ? 2.382 ? ? metalc16 metalc ? ? A DG 9 O6 ? ? ? 1_555 N AG . AG ? ? A DG 9 A AG 112 1_555 ? ? ? ? ? ? ? 2.425 ? ? metalc17 metalc ? ? A DC 16 N3 ? ? ? 1_555 O AG . AG ? ? A DC 16 A AG 113 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc18 metalc ? ? A DC 16 O2 ? ? ? 1_555 R AG . AG ? ? A DC 16 A AG 116 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc19 metalc ? ? A DC 18 N3 ? ? ? 1_555 R AG . AG ? ? A DC 18 A AG 116 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc20 metalc ? ? A DC 19 O2 ? ? ? 1_555 K AG . AG ? ? A DC 19 A AG 109 1_555 ? ? ? ? ? ? ? 2.653 ? ? metalc21 metalc ? ? A DC 19 N3 ? ? ? 1_555 M AG . AG ? ? A DC 19 A AG 111 1_555 ? ? ? ? ? ? ? 2.427 ? ? metalc22 metalc ? ? A DC 19 O2 ? ? ? 1_555 P AG . AG ? ? A DC 19 A AG 114 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc23 metalc ? ? A DA 21 OP2 ? ? ? 1_555 C AG . AG ? ? A DA 21 A AG 101 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc24 metalc ? ? A DA 21 N7 ? ? ? 1_555 D AG . AG ? ? A DA 21 A AG 102 1_555 ? ? ? ? ? ? ? 2.246 ? ? metalc25 metalc ? ? A DA 21 OP1 ? ? ? 1_555 E AG . AG ? ? A DA 21 A AG 103 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc26 metalc ? ? A DG 22 O6 ? ? ? 1_555 D AG . AG ? ? A DG 22 A AG 102 1_555 ? ? ? ? ? ? ? 2.222 ? ? metalc27 metalc ? ? A DG 22 N7 ? ? ? 1_555 E AG . AG ? ? A DG 22 A AG 103 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc28 metalc ? ? A DG 22 O6 ? ? ? 1_555 G AG . AG ? ? A DG 22 A AG 105 1_555 ? ? ? ? ? ? ? 2.614 ? ? metalc29 metalc ? ? A DC 23 N3 ? ? ? 1_555 J AG . AG ? ? A DC 23 A AG 108 1_555 ? ? ? ? ? ? ? 2.226 ? ? metalc30 metalc ? ? A DG 24 N1 ? ? ? 1_555 L AG . AG ? ? A DG 24 A AG 110 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc31 metalc ? ? A DG 24 O6 ? ? ? 1_555 M AG . AG ? ? A DG 24 A AG 111 1_555 ? ? ? ? ? ? ? 2.331 ? ? metalc32 metalc ? ? B DC 1 O2 ? ? ? 1_555 U AG . AG ? ? C DC 1 C AG 101 1_555 ? ? ? ? ? ? ? 2.426 ? ? metalc33 metalc ? ? B DC 1 N3 ? ? ? 1_555 X AG . AG ? ? C DC 1 C AG 104 1_555 ? ? ? ? ? ? ? 2.363 ? ? metalc34 metalc ? ? B DA 2 N1 ? ? ? 1_555 V AG . AG ? ? C DA 2 C AG 102 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc35 metalc ? ? B DC 3 N3 ? ? ? 1_555 U AG . AG ? ? C DC 3 C AG 101 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc36 metalc ? ? B DC 3 O2 ? ? ? 1_555 W AG . AG ? ? C DC 3 C AG 103 1_555 ? ? ? ? ? ? ? 2.633 ? ? metalc37 metalc ? ? B DC 4 O2 ? ? ? 1_555 W AG . AG ? ? C DC 4 C AG 103 1_555 ? ? ? ? ? ? ? 2.493 ? ? metalc38 metalc ? ? B DC 4 N3 ? ? ? 1_555 Z AG . AG ? ? C DC 4 C AG 106 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc39 metalc ? ? B DC 4 O2 ? ? ? 1_555 BA AG . AG ? ? C DC 4 C AG 108 1_555 ? ? ? ? ? ? ? 2.523 ? ? metalc40 metalc ? ? B DA 6 OP1 ? ? ? 1_555 HA AG . AG ? ? C DA 6 C AG 114 1_555 ? ? ? ? ? ? ? 2.413 ? ? metalc41 metalc ? ? B DA 6 N7 ? ? ? 1_555 IA AG . AG ? ? C DA 6 C AG 115 1_555 ? ? ? ? ? ? ? 2.230 ? ? metalc42 metalc ? ? B DA 6 OP2 ? ? ? 1_555 JA AG . AG ? ? C DA 6 C AG 116 1_555 ? ? ? ? ? ? ? 2.210 ? ? metalc43 metalc ? ? B DG 7 O6 ? ? ? 1_555 FA AG . AG ? ? C DG 7 C AG 112 1_555 ? ? ? ? ? ? ? 2.606 ? ? metalc44 metalc ? ? B DG 7 N7 ? ? ? 1_555 HA AG . AG ? ? C DG 7 C AG 114 1_555 ? ? ? ? ? ? ? 2.224 ? ? metalc45 metalc ? ? B DG 7 O6 ? ? ? 1_555 IA AG . AG ? ? C DG 7 C AG 115 1_555 ? ? ? ? ? ? ? 2.200 ? ? metalc46 metalc ? ? B DC 8 N3 ? ? ? 1_555 CA AG . AG ? ? C DC 8 C AG 109 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc47 metalc ? ? B DC 8 O2 ? ? ? 1_555 FA AG . AG ? ? C DC 8 C AG 112 1_555 ? ? ? ? ? ? ? 2.652 ? ? metalc48 metalc ? ? B DG 9 O6 ? ? ? 1_555 Z AG . AG ? ? C DG 9 C AG 106 1_555 ? ? ? ? ? ? ? 2.426 ? ? metalc49 metalc ? ? B DG 9 N1 ? ? ? 1_555 AA AG . AG ? ? C DG 9 C AG 107 1_555 ? ? ? ? ? ? ? 2.377 ? ? metalc50 metalc ? ? B DC 16 O2 ? ? ? 1_555 V AG . AG ? ? C DC 16 C AG 102 1_555 ? ? ? ? ? ? ? 2.435 ? ? metalc51 metalc ? ? B DC 16 N3 ? ? ? 1_555 W AG . AG ? ? C DC 16 C AG 103 1_555 ? ? ? ? ? ? ? 2.404 ? ? metalc52 metalc ? ? B DC 18 N3 ? ? ? 1_555 V AG . AG ? ? C DC 18 C AG 102 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc53 metalc ? ? B DC 19 O2 ? ? ? 1_555 X AG . AG ? ? C DC 19 C AG 104 1_555 ? ? ? ? ? ? ? 2.554 ? ? metalc54 metalc ? ? B DC 19 N3 ? ? ? 1_555 Y AG . AG ? ? C DC 19 C AG 105 1_555 ? ? ? ? ? ? ? 2.431 ? ? metalc55 metalc ? ? B DC 19 O2 ? ? ? 1_555 AA AG . AG ? ? C DC 19 C AG 107 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc56 metalc ? ? B DA 21 OP1 ? ? ? 1_555 GA AG . AG ? ? C DA 21 C AG 113 1_555 ? ? ? ? ? ? ? 2.318 ? ? metalc57 metalc ? ? B DA 21 OP2 ? ? ? 1_555 IA AG . AG ? ? C DA 21 C AG 115 1_555 ? ? ? ? ? ? ? 2.277 ? ? metalc58 metalc ? ? B DA 21 N7 ? ? ? 1_555 JA AG . AG ? ? C DA 21 C AG 116 1_555 ? ? ? ? ? ? ? 2.205 ? ? metalc59 metalc ? ? B DG 22 O6 ? ? ? 1_555 EA AG . AG ? ? C DG 22 C AG 111 1_555 ? ? ? ? ? ? ? 2.607 ? ? metalc60 metalc ? ? B DG 22 N7 ? ? ? 1_555 GA AG . AG ? ? C DG 22 C AG 113 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc61 metalc ? ? B DG 22 O6 ? ? ? 1_555 JA AG . AG ? ? C DG 22 C AG 116 1_555 ? ? ? ? ? ? ? 2.221 ? ? metalc62 metalc ? ? B DC 23 N3 ? ? ? 1_555 DA AG . AG ? ? C DC 23 C AG 110 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc63 metalc ? ? B DG 24 O6 ? ? ? 1_555 Y AG . AG ? ? C DG 24 C AG 105 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc64 metalc ? ? B DG 24 N1 ? ? ? 1_555 BA AG . AG ? ? C DG 24 C AG 108 1_555 ? ? ? ? ? ? ? 2.253 ? ? hydrog1 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DC 3 N4 ? ? A DC 1 A DC 3 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DC 19 O2 ? ? A DC 1 A DC 19 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog3 hydrog ? ? A DA 2 N6 ? ? ? 1_555 A DA 10 N1 ? ? A DA 2 A DA 10 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog4 hydrog ? ? A DA 2 N7 ? ? ? 1_555 A DA 10 N6 ? ? A DA 2 A DA 10 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 A DC 18 O2 ? ? A DA 2 A DC 18 1_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DC 16 N4 ? ? A DC 3 A DC 16 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog7 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 4 A DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DC 16 N4 ? ? A DC 4 A DC 16 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog9 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 24 N2 ? ? A DC 4 A DG 24 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog10 hydrog ? ? A DT 5 O2 ? ? ? 1_555 A DG 22 N2 ? ? A DT 5 A DG 22 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog11 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 19 O2 ? ? A DG 9 A DC 19 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog12 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 17 N1 ? ? A DT 15 C DA 17 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog13 hydrog ? ? A DT 15 O2 ? ? ? 1_555 B DA 17 N6 ? ? A DT 15 C DA 17 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog14 hydrog ? ? A DC 16 O2 ? ? ? 1_555 A DC 18 N4 ? ? A DC 16 A DC 18 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog15 hydrog ? ? A DA 17 N1 ? ? ? 1_555 B DT 15 N3 ? ? A DA 17 C DT 15 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog16 hydrog ? ? A DA 17 N6 ? ? ? 1_555 B DT 15 O2 ? ? A DA 17 C DT 15 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog17 hydrog ? ? A DC 19 N4 ? ? ? 1_555 A DG 24 O6 ? ? A DC 19 A DG 24 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog18 hydrog ? ? A DC 23 O2 ? ? ? 1_555 A DA 25 N6 ? ? A DC 23 A DA 25 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog19 hydrog ? ? B DC 1 O2 ? ? ? 1_555 B DC 3 N4 ? ? C DC 1 C DC 3 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog20 hydrog ? ? B DC 1 N4 ? ? ? 1_555 B DC 19 O2 ? ? C DC 1 C DC 19 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog21 hydrog ? ? B DA 2 N6 ? ? ? 1_555 B DA 10 N1 ? ? C DA 2 C DA 10 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog22 hydrog ? ? B DA 2 N7 ? ? ? 1_555 B DA 10 N6 ? ? C DA 2 C DA 10 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog23 hydrog ? ? B DA 2 N6 ? ? ? 1_555 B DC 18 O2 ? ? C DA 2 C DC 18 1_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog24 hydrog ? ? B DC 3 O2 ? ? ? 1_555 B DC 16 N4 ? ? C DC 3 C DC 16 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog25 hydrog ? ? B DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? C DC 4 C DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog26 hydrog ? ? B DC 4 O2 ? ? ? 1_555 B DC 16 N4 ? ? C DC 4 C DC 16 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog27 hydrog ? ? B DC 4 O2 ? ? ? 1_555 B DG 24 N2 ? ? C DC 4 C DG 24 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog28 hydrog ? ? B DT 5 O2 ? ? ? 1_555 B DG 22 N2 ? ? C DT 5 C DG 22 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog29 hydrog ? ? B DC 16 O2 ? ? ? 1_555 B DC 18 N4 ? ? C DC 16 C DC 18 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog30 hydrog ? ? B DC 19 N4 ? ? ? 1_555 B DG 24 O6 ? ? C DC 19 C DG 24 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog31 hydrog ? ? B DC 23 O2 ? ? ? 1_555 B DA 25 N6 ? ? C DC 23 C DA 25 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N3 ? A DC 1 ? A DC 1 ? 1_555 AG ? P AG . ? A AG 114 ? 1_555 O2 ? A DC 19 ? A DC 19 ? 1_555 92.3 ? 2 O2 ? A DC 1 ? A DC 1 ? 1_555 AG ? Q AG . ? A AG 115 ? 1_555 N3 ? A DC 3 ? A DC 3 ? 1_555 97.5 ? 3 N1 ? A DA 2 ? A DA 2 ? 1_555 AG ? R AG . ? A AG 116 ? 1_555 O2 ? A DC 16 ? A DC 16 ? 1_555 87.7 ? 4 N1 ? A DA 2 ? A DA 2 ? 1_555 AG ? R AG . ? A AG 116 ? 1_555 N3 ? A DC 18 ? A DC 18 ? 1_555 111.8 ? 5 O2 ? A DC 16 ? A DC 16 ? 1_555 AG ? R AG . ? A AG 116 ? 1_555 N3 ? A DC 18 ? A DC 18 ? 1_555 87.8 ? 6 O2 ? A DC 4 ? A DC 4 ? 1_555 AG ? L AG . ? A AG 110 ? 1_555 N1 ? A DG 24 ? A DG 24 ? 1_555 86.4 ? 7 N3 ? A DC 4 ? A DC 4 ? 1_555 AG ? N AG . ? A AG 112 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 89.0 ? 8 O2 ? A DC 4 ? A DC 4 ? 1_555 AG ? O AG . ? A AG 113 ? 1_555 N3 ? A DC 16 ? A DC 16 ? 1_555 101.7 ? 9 N7 ? A DA 6 ? A DA 6 ? 1_555 AG ? C AG . ? A AG 101 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 90.2 ? 10 N7 ? A DA 6 ? A DA 6 ? 1_555 AG ? C AG . ? A AG 101 ? 1_555 OP2 ? A DA 21 ? A DA 21 ? 1_555 87.6 ? 11 O6 ? A DG 7 ? A DG 7 ? 1_555 AG ? C AG . ? A AG 101 ? 1_555 OP2 ? A DA 21 ? A DA 21 ? 1_555 93.6 ? 12 OP2 ? A DA 6 ? A DA 6 ? 1_555 AG ? D AG . ? A AG 102 ? 1_555 N7 ? A DA 21 ? A DA 21 ? 1_555 93.2 ? 13 OP2 ? A DA 6 ? A DA 6 ? 1_555 AG ? D AG . ? A AG 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 93.5 ? 14 N7 ? A DA 21 ? A DA 21 ? 1_555 AG ? D AG . ? A AG 102 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 96.2 ? 15 OP1 ? A DA 6 ? A DA 6 ? 1_555 AG ? F AG . ? A AG 104 ? 1_555 N7 ? A DG 7 ? A DG 7 ? 1_555 94.5 ? 16 N1 ? A DG 9 ? A DG 9 ? 1_555 AG ? K AG . ? A AG 109 ? 1_555 O2 ? A DC 19 ? A DC 19 ? 1_555 78.9 ? 17 N3 ? A DC 19 ? A DC 19 ? 1_555 AG ? M AG . ? A AG 111 ? 1_555 O6 ? A DG 24 ? A DG 24 ? 1_555 88.9 ? 18 OP1 ? A DA 21 ? A DA 21 ? 1_555 AG ? E AG . ? A AG 103 ? 1_555 N7 ? A DG 22 ? A DG 22 ? 1_555 104.8 ? 19 O2 ? B DC 1 ? C DC 1 ? 1_555 AG ? U AG . ? C AG 101 ? 1_555 N3 ? B DC 3 ? C DC 3 ? 1_555 97.9 ? 20 N3 ? B DC 1 ? C DC 1 ? 1_555 AG ? X AG . ? C AG 104 ? 1_555 O2 ? B DC 19 ? C DC 19 ? 1_555 93.4 ? 21 N1 ? B DA 2 ? C DA 2 ? 1_555 AG ? V AG . ? C AG 102 ? 1_555 O2 ? B DC 16 ? C DC 16 ? 1_555 88.8 ? 22 N1 ? B DA 2 ? C DA 2 ? 1_555 AG ? V AG . ? C AG 102 ? 1_555 N3 ? B DC 18 ? C DC 18 ? 1_555 112.2 ? 23 O2 ? B DC 16 ? C DC 16 ? 1_555 AG ? V AG . ? C AG 102 ? 1_555 N3 ? B DC 18 ? C DC 18 ? 1_555 90.5 ? 24 O2 ? B DC 3 ? C DC 3 ? 1_555 AG ? W AG . ? C AG 103 ? 1_555 O2 ? B DC 4 ? C DC 4 ? 1_555 77.4 ? 25 O2 ? B DC 3 ? C DC 3 ? 1_555 AG ? W AG . ? C AG 103 ? 1_555 N3 ? B DC 16 ? C DC 16 ? 1_555 80.4 ? 26 O2 ? B DC 4 ? C DC 4 ? 1_555 AG ? W AG . ? C AG 103 ? 1_555 N3 ? B DC 16 ? C DC 16 ? 1_555 99.2 ? 27 N3 ? B DC 4 ? C DC 4 ? 1_555 AG ? Z AG . ? C AG 106 ? 1_555 O6 ? B DG 9 ? C DG 9 ? 1_555 90.7 ? 28 O2 ? B DC 4 ? C DC 4 ? 1_555 AG ? BA AG . ? C AG 108 ? 1_555 N1 ? B DG 24 ? C DG 24 ? 1_555 83.3 ? 29 OP1 ? B DA 6 ? C DA 6 ? 1_555 AG ? HA AG . ? C AG 114 ? 1_555 N7 ? B DG 7 ? C DG 7 ? 1_555 91.5 ? 30 N7 ? B DA 6 ? C DA 6 ? 1_555 AG ? IA AG . ? C AG 115 ? 1_555 O6 ? B DG 7 ? C DG 7 ? 1_555 91.3 ? 31 N7 ? B DA 6 ? C DA 6 ? 1_555 AG ? IA AG . ? C AG 115 ? 1_555 OP2 ? B DA 21 ? C DA 21 ? 1_555 92.7 ? 32 O6 ? B DG 7 ? C DG 7 ? 1_555 AG ? IA AG . ? C AG 115 ? 1_555 OP2 ? B DA 21 ? C DA 21 ? 1_555 99.6 ? 33 OP2 ? B DA 6 ? C DA 6 ? 1_555 AG ? JA AG . ? C AG 116 ? 1_555 N7 ? B DA 21 ? C DA 21 ? 1_555 94.5 ? 34 OP2 ? B DA 6 ? C DA 6 ? 1_555 AG ? JA AG . ? C AG 116 ? 1_555 O6 ? B DG 22 ? C DG 22 ? 1_555 98.7 ? 35 N7 ? B DA 21 ? C DA 21 ? 1_555 AG ? JA AG . ? C AG 116 ? 1_555 O6 ? B DG 22 ? C DG 22 ? 1_555 94.6 ? 36 O6 ? B DG 7 ? C DG 7 ? 1_555 AG ? FA AG . ? C AG 112 ? 1_555 O2 ? B DC 8 ? C DC 8 ? 1_555 80.6 ? 37 N1 ? B DG 9 ? C DG 9 ? 1_555 AG ? AA AG . ? C AG 107 ? 1_555 O2 ? B DC 19 ? C DC 19 ? 1_555 79.3 ? 38 N3 ? B DC 19 ? C DC 19 ? 1_555 AG ? Y AG . ? C AG 105 ? 1_555 O6 ? B DG 24 ? C DG 24 ? 1_555 90.0 ? 39 OP1 ? B DA 21 ? C DA 21 ? 1_555 AG ? GA AG . ? C AG 113 ? 1_555 N7 ? B DG 22 ? C DG 22 ? 1_555 102.0 ? # _pdbx_entry_details.entry_id 9XV9 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DT 11 ? A DT 11 2 1 Y 1 A DT 12 ? A DT 12 3 1 Y 1 A DT 13 ? A DT 13 4 1 Y 1 A DT 14 ? A DT 14 5 1 Y 1 C DT 11 ? B DT 11 6 1 Y 1 C DT 12 ? B DT 12 7 1 Y 1 C DT 13 ? B DT 13 8 1 Y 1 C DT 14 ? B DT 14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AG AG AG N N 1 CL CL CL N N 2 DA OP3 O N N 3 DA P P N N 4 DA OP1 O N N 5 DA OP2 O N N 6 DA "O5'" O N N 7 DA "C5'" C N N 8 DA "C4'" C N R 9 DA "O4'" O N N 10 DA "C3'" C N S 11 DA "O3'" O N N 12 DA "C2'" C N N 13 DA "C1'" C N R 14 DA N9 N Y N 15 DA C8 C Y N 16 DA N7 N Y N 17 DA C5 C Y N 18 DA C6 C Y N 19 DA N6 N N N 20 DA N1 N Y N 21 DA C2 C Y N 22 DA N3 N Y N 23 DA C4 C Y N 24 DA HOP3 H N N 25 DA HOP2 H N N 26 DA "H5'" H N N 27 DA "H5''" H N N 28 DA "H4'" H N N 29 DA "H3'" H N N 30 DA "HO3'" H N N 31 DA "H2'" H N N 32 DA "H2''" H N N 33 DA "H1'" H N N 34 DA H8 H N N 35 DA H61 H N N 36 DA H62 H N N 37 DA H2 H N N 38 DC OP3 O N N 39 DC P P N N 40 DC OP1 O N N 41 DC OP2 O N N 42 DC "O5'" O N N 43 DC "C5'" C N N 44 DC "C4'" C N R 45 DC "O4'" O N N 46 DC "C3'" C N S 47 DC "O3'" O N N 48 DC "C2'" C N N 49 DC "C1'" C N R 50 DC N1 N N N 51 DC C2 C N N 52 DC O2 O N N 53 DC N3 N N N 54 DC C4 C N N 55 DC N4 N N N 56 DC C5 C N N 57 DC C6 C N N 58 DC HOP3 H N N 59 DC HOP2 H N N 60 DC "H5'" H N N 61 DC "H5''" H N N 62 DC "H4'" H N N 63 DC "H3'" H N N 64 DC "HO3'" H N N 65 DC "H2'" H N N 66 DC "H2''" H N N 67 DC "H1'" H N N 68 DC H41 H N N 69 DC H42 H N N 70 DC H5 H N N 71 DC H6 H N N 72 DG OP3 O N N 73 DG P P N N 74 DG OP1 O N N 75 DG OP2 O N N 76 DG "O5'" O N N 77 DG "C5'" C N N 78 DG "C4'" C N R 79 DG "O4'" O N N 80 DG "C3'" C N S 81 DG "O3'" O N N 82 DG "C2'" C N N 83 DG "C1'" C N R 84 DG N9 N Y N 85 DG C8 C Y N 86 DG N7 N Y N 87 DG C5 C Y N 88 DG C6 C N N 89 DG O6 O N N 90 DG N1 N N N 91 DG C2 C N N 92 DG N2 N N N 93 DG N3 N N N 94 DG C4 C Y N 95 DG HOP3 H N N 96 DG HOP2 H N N 97 DG "H5'" H N N 98 DG "H5''" H N N 99 DG "H4'" H N N 100 DG "H3'" H N N 101 DG "HO3'" H N N 102 DG "H2'" H N N 103 DG "H2''" H N N 104 DG "H1'" H N N 105 DG H8 H N N 106 DG H1 H N N 107 DG H21 H N N 108 DG H22 H N N 109 DT OP3 O N N 110 DT P P N N 111 DT OP1 O N N 112 DT OP2 O N N 113 DT "O5'" O N N 114 DT "C5'" C N N 115 DT "C4'" C N R 116 DT "O4'" O N N 117 DT "C3'" C N S 118 DT "O3'" O N N 119 DT "C2'" C N N 120 DT "C1'" C N R 121 DT N1 N N N 122 DT C2 C N N 123 DT O2 O N N 124 DT N3 N N N 125 DT C4 C N N 126 DT O4 O N N 127 DT C5 C N N 128 DT C7 C N N 129 DT C6 C N N 130 DT HOP3 H N N 131 DT HOP2 H N N 132 DT "H5'" H N N 133 DT "H5''" H N N 134 DT "H4'" H N N 135 DT "H3'" H N N 136 DT "HO3'" H N N 137 DT "H2'" H N N 138 DT "H2''" H N N 139 DT "H1'" H N N 140 DT H3 H N N 141 DT H71 H N N 142 DT H72 H N N 143 DT H73 H N N 144 DT H6 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9XV9 'double helix' 9XV9 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 5 1_555 A DG 22 1_555 0.056 -5.411 0.178 -50.825 -32.761 -110.735 1 A_DT5:DG22_A A 5 ? A 22 ? ? 2 1 A DA 25 1_555 A DC 23 1_555 -6.932 0.001 1.800 -54.227 -9.010 97.309 2 A_DA25:DC23_A A 25 ? A 23 ? ? ? 1 A DC 19 1_555 A DG 24 1_555 1.306 1.598 -1.648 1.681 -37.679 -88.873 3 A_DC19:DG24_A A 19 ? A 24 ? ? ? 1 A DC 4 1_555 A DC 16 1_555 0.989 -3.570 0.550 23.447 20.907 -91.179 4 A_DC4:DC16_A A 4 ? A 16 ? ? ? 1 A DC 1 1_555 A DC 3 1_555 1.706 -3.182 0.488 -37.992 11.805 -81.654 5 A_DC1:DC3_A A 1 ? A 3 ? ? ? 1 B DT 5 1_555 B DG 22 1_555 0.101 -5.494 0.239 -52.000 -33.262 -111.943 6 C_DT5:DG22_C C 5 ? C 22 ? ? 2 1 B DA 25 1_555 B DC 23 1_555 -6.995 0.450 1.905 -53.363 -9.905 102.322 7 C_DA25:DC23_C C 25 ? C 23 ? ? ? 1 B DC 19 1_555 B DG 24 1_555 1.320 1.652 -1.331 5.737 -40.450 -90.222 8 C_DC19:DG24_C C 19 ? C 24 ? ? ? 1 B DC 4 1_555 B DC 16 1_555 1.032 -3.417 0.727 22.699 20.074 -87.165 9 C_DC4:DC16_C C 4 ? C 16 ? ? ? 1 B DC 1 1_555 B DC 3 1_555 1.634 -3.152 0.385 -37.341 12.493 -81.607 10 C_DC1:DC3_C C 1 ? C 3 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 5 1_555 A DG 22 1_555 A DA 25 1_555 A DC 23 1_555 1.518 -3.287 4.376 -124.775 -124.837 -114.216 2.413 -0.010 2.996 62.616 -62.586 -178.101 1 AA_DT5DA25:DC23DG22_AA A 5 ? A 22 ? A 25 ? A 23 ? 1 A DA 25 1_555 A DC 23 1_555 A DC 19 1_555 A DG 24 1_555 -0.357 0.839 -4.314 25.731 14.790 -97.746 -0.239 -0.761 -4.234 -9.657 16.801 -101.042 2 AA_DA25DC19:DG24DC23_AA A 25 ? A 23 ? A 19 ? A 24 ? 1 A DC 19 1_555 A DG 24 1_555 A DC 4 1_555 A DC 16 1_555 0.874 3.083 -1.852 14.252 9.783 174.808 1.546 -0.443 -1.835 4.896 -7.133 174.867 3 AA_DC19DC4:DC16DG24_AA A 19 ? A 24 ? A 4 ? A 16 ? 1 A DC 4 1_555 A DC 16 1_555 A DC 1 1_555 A DC 3 1_555 1.445 -2.828 -0.626 -30.865 39.916 -102.494 1.732 0.889 0.418 -24.634 -19.048 -111.021 4 AA_DC4DC1:DC3DC16_AA A 4 ? A 16 ? A 1 ? A 3 ? 1 B DT 5 1_555 B DG 22 1_555 B DA 25 1_555 B DC 23 1_555 0.325 -4.409 3.524 -127.454 -120.820 -159.040 2.409 -0.053 2.957 60.435 -63.754 -179.203 5 CC_DT5DA25:DC23DG22_CC C 5 ? C 22 ? C 25 ? C 23 ? 1 B DA 25 1_555 B DC 23 1_555 B DC 19 1_555 B DG 24 1_555 -0.225 0.928 -4.354 25.837 17.197 -100.159 -0.253 -0.651 -4.321 -11.028 16.569 -103.612 6 CC_DA25DC19:DG24DC23_CC C 25 ? C 23 ? C 19 ? C 24 ? 1 B DC 19 1_555 B DG 24 1_555 B DC 4 1_555 B DC 16 1_555 0.828 3.081 -1.739 11.692 7.893 174.546 1.545 -0.419 -1.725 3.951 -5.853 174.588 7 CC_DC19DC4:DC16DG24_CC C 19 ? C 24 ? C 4 ? C 16 ? 1 B DC 4 1_555 B DC 16 1_555 B DC 1 1_555 B DC 3 1_555 1.430 -2.814 -0.638 -30.892 38.379 -99.932 1.753 0.896 0.419 -24.084 -19.385 -108.436 8 CC_DC4DC1:DC3DC16_CC C 4 ? C 16 ? C 1 ? C 3 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Independent Research Fund Denmark - Medical Sciences' Denmark 0136-00024B 1 'Novo Nordisk Foundation' Denmark NNF22OC0073734 2 'Swedish Research Council' Sweden 2018-07152 3 'Novo Nordisk Foundation' Denmark NNF17CC0030666 4 'Japan Agency for Medical Research and Development (AMED)' Japan JP23ama121014 5 # _atom_sites.entry_id 9XV9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.012979 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012979 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.046486 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol AG C CL N O P # loop_ #