HEADER REPLICATION, HYDROLASE/DNA 29-AUG-25 9Y1B TITLE WT HUMAN DNA POLYMERASE BETA, TERNARY COMPLEX DC:DGMPCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7,4.2.99.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TEMPLATE STRAND; COMPND 8 CHAIN: T; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PRIMER STRAND; COMPND 12 CHAIN: P; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: DOWNSTREAM; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS POLYMERASE, REPLICATION, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.E.ECKENROTH,S.DOUBLIE REVDAT 1 28-JAN-26 9Y1B 0 JRNL AUTH D.L.SAWYER,B.E.ECKENROTH,C.CHAVIRA,K.ALNAJJAR,J.P.HANLEY, JRNL AUTH 2 J.A.DRAGON,S.DOUBLIE,J.B.SWEASY JRNL TITL THE S180R HUMAN GERMLINE VARIANT OF DNA POLYMERASE BETA IS A JRNL TITL 2 LOW FIDELITY ENZYME WITH REDUCED FLEXIBILITY OF THE FINGERS JRNL TITL 3 DOMAIN. JRNL REF BIOCHEMISTRY 2026 JRNL REFN ISSN 0006-2960 JRNL PMID 41524291 JRNL DOI 10.1021/ACS.BIOCHEM.5C00628 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 62068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.910 REMARK 3 FREE R VALUE TEST SET COUNT : 6149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.0300 - 5.8800 0.95 1855 199 0.1714 0.1760 REMARK 3 2 5.8800 - 4.6800 0.98 1903 212 0.1717 0.2072 REMARK 3 3 4.6800 - 4.0900 0.99 1920 202 0.1512 0.1904 REMARK 3 4 4.0900 - 3.7200 0.99 1890 215 0.1499 0.2014 REMARK 3 5 3.7200 - 3.4500 0.99 1943 181 0.1610 0.1862 REMARK 3 6 3.4500 - 3.2500 1.00 1966 199 0.1645 0.1762 REMARK 3 7 3.2500 - 3.0800 1.00 1959 208 0.1728 0.2186 REMARK 3 8 3.0800 - 2.9500 1.00 1896 225 0.1813 0.2335 REMARK 3 9 2.9500 - 2.8400 1.00 1893 221 0.1701 0.2008 REMARK 3 10 2.8400 - 2.7400 1.00 1929 227 0.1762 0.2173 REMARK 3 11 2.7400 - 2.6500 1.00 1944 200 0.1891 0.2343 REMARK 3 12 2.6500 - 2.5800 1.00 1997 203 0.1929 0.2633 REMARK 3 13 2.5800 - 2.5100 1.00 1875 204 0.1831 0.2491 REMARK 3 14 2.5100 - 2.4500 1.00 1982 230 0.1923 0.2266 REMARK 3 15 2.4500 - 2.3900 0.98 1857 195 0.1956 0.2364 REMARK 3 16 2.3900 - 2.3400 0.98 1884 223 0.1995 0.2348 REMARK 3 17 2.3400 - 2.3000 0.97 1792 240 0.2028 0.2499 REMARK 3 18 2.3000 - 2.2500 0.96 1909 191 0.2086 0.2361 REMARK 3 19 2.2500 - 2.2100 0.95 1809 212 0.2052 0.2450 REMARK 3 20 2.2100 - 2.1700 0.95 1887 215 0.2166 0.3121 REMARK 3 21 2.1700 - 2.1400 0.95 1823 197 0.2090 0.2638 REMARK 3 22 2.1400 - 2.1100 0.94 1781 217 0.2101 0.2590 REMARK 3 23 2.1100 - 2.0800 0.94 1852 216 0.2274 0.2704 REMARK 3 24 2.0800 - 2.0500 0.94 1774 209 0.2361 0.3077 REMARK 3 25 2.0500 - 2.0200 0.91 1754 164 0.2492 0.2679 REMARK 3 26 2.0200 - 1.9900 0.92 1813 213 0.2669 0.3200 REMARK 3 27 1.9900 - 1.9700 0.91 1786 150 0.2629 0.3035 REMARK 3 28 1.9700 - 1.9400 0.92 1765 187 0.2854 0.3141 REMARK 3 29 1.9400 - 1.9200 0.90 1783 207 0.3050 0.3761 REMARK 3 30 1.9200 - 1.9000 0.89 1698 187 0.3239 0.3122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3451 REMARK 3 ANGLE : 0.738 4797 REMARK 3 CHIRALITY : 0.045 525 REMARK 3 PLANARITY : 0.006 505 REMARK 3 DIHEDRAL : 20.137 1368 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 12:90 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2700 -8.5178 10.1766 REMARK 3 T TENSOR REMARK 3 T11: 0.2178 T22: 0.2517 REMARK 3 T33: 0.1953 T12: 0.0493 REMARK 3 T13: -0.0068 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 1.0923 L22: 1.6820 REMARK 3 L33: 1.1136 L12: 0.1265 REMARK 3 L13: 0.0979 L23: -0.1812 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: 0.1065 S13: -0.0316 REMARK 3 S21: -0.0971 S22: 0.0126 S23: -0.1821 REMARK 3 S31: 0.3065 S32: 0.3496 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 91:150 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3920 6.9543 30.2648 REMARK 3 T TENSOR REMARK 3 T11: 0.2055 T22: 0.2939 REMARK 3 T33: 0.2317 T12: -0.0156 REMARK 3 T13: -0.0412 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.2397 L22: 0.8801 REMARK 3 L33: 1.1486 L12: -0.1015 REMARK 3 L13: -0.5747 L23: -0.2387 REMARK 3 S TENSOR REMARK 3 S11: 0.0852 S12: -0.4271 S13: -0.0016 REMARK 3 S21: 0.1709 S22: -0.0259 S23: -0.1973 REMARK 3 S31: -0.0179 S32: 0.3060 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 151:260 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1574 10.8316 20.0081 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.1767 REMARK 3 T33: 0.1603 T12: 0.0095 REMARK 3 T13: 0.0026 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.0760 L22: 1.2197 REMARK 3 L33: 2.4290 L12: -0.1897 REMARK 3 L13: 0.0045 L23: 0.1805 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.1311 S13: 0.0661 REMARK 3 S21: 0.0215 S22: 0.0361 S23: 0.1369 REMARK 3 S31: -0.1194 S32: -0.2528 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESID 261:335 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1328 8.5115 -1.8617 REMARK 3 T TENSOR REMARK 3 T11: 0.2717 T22: 0.2198 REMARK 3 T33: 0.1775 T12: -0.0039 REMARK 3 T13: 0.0199 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.3440 L22: 1.4439 REMARK 3 L33: 1.7355 L12: -0.2429 REMARK 3 L13: 0.2665 L23: 0.4992 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: 0.2455 S13: 0.0027 REMARK 3 S21: -0.5041 S22: -0.0204 S23: -0.0896 REMARK 3 S31: -0.0827 S32: 0.0647 S33: 0.0013 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ((CHAIN T AND RESID 1:6) OR (CHAIN D AND RESID 1:5)) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8351 4.4985 -2.2025 REMARK 3 T TENSOR REMARK 3 T11: 0.6345 T22: 0.7364 REMARK 3 T33: 0.4402 T12: -0.0632 REMARK 3 T13: 0.2722 T23: 0.1223 REMARK 3 L TENSOR REMARK 3 L11: 0.6910 L22: 0.9661 REMARK 3 L33: 0.6993 L12: -0.5743 REMARK 3 L13: 0.2197 L23: 0.3909 REMARK 3 S TENSOR REMARK 3 S11: 0.3328 S12: 1.1722 S13: 0.9562 REMARK 3 S21: -1.4588 S22: -0.2574 S23: -0.9884 REMARK 3 S31: -0.4021 S32: 0.7019 S33: -0.1447 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ((CHAIN T AND RESID 7:11) OR (CHAIN P AND RESID REMARK 3 6:10)) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6499 16.0907 14.3906 REMARK 3 T TENSOR REMARK 3 T11: 0.2396 T22: 0.1699 REMARK 3 T33: 0.2460 T12: -0.0362 REMARK 3 T13: 0.0344 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 0.1382 L22: 0.3012 REMARK 3 L33: 0.2456 L12: -0.2255 REMARK 3 L13: 0.0049 L23: 0.0401 REMARK 3 S TENSOR REMARK 3 S11: 0.0789 S12: -0.0397 S13: 0.1836 REMARK 3 S21: -0.1951 S22: -0.0489 S23: -0.4570 REMARK 3 S31: 0.0641 S32: 0.0011 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ((CHAIN T AND RESID 12:16) OR (CHAIN P AND RESID REMARK 3 1:5)) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7818 30.4884 17.8017 REMARK 3 T TENSOR REMARK 3 T11: 0.4599 T22: 0.2240 REMARK 3 T33: 0.5460 T12: -0.0514 REMARK 3 T13: 0.0125 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 0.3628 L22: 0.0545 REMARK 3 L33: 0.6822 L12: 0.1098 REMARK 3 L13: 0.0982 L23: 0.0295 REMARK 3 S TENSOR REMARK 3 S11: -0.1973 S12: -0.1206 S13: 0.2528 REMARK 3 S21: -0.7067 S22: -0.4071 S23: -0.4249 REMARK 3 S31: 0.2649 S32: -0.2204 S33: -0.0223 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MODEL REFINEMENT USES I+/I-. DATA REMARK 3 COLLECTION STATISTICS REPORTED FOR I-MEAN SO % COMPLETENESS AND REMARK 3 NUMBER OR REFLECTIONS MAY DIFFER BETWEEN TABLES. REMARK 4 REMARK 4 9Y1B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1000299622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER IMUS MICROFOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS 3 REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS 3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.120 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.31 REMARK 200 R MERGE FOR SHELL (I) : 1.08400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: CRYOPROTECTION WITH 19% PEG 3350, 150 MM SODIUM ACETATE, REMARK 200 50 MM MAGNESIUM CHLORIDE, 50 MM MAGNESIUM ACETATE, 50 MM HEPES, REMARK 200 1 MM TECP, 15% ETHYLENE GLYCOL WITH 1 MM DNTP. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-16% PEG 3350, 150-300 MM SODIUM REMARK 280 ACETATE, 50 MM HEPES, 1 MM TECP 250UM PROTEIN WITH 300 UM DNA REMARK 280 ASSEMBLY MIXED 1:1 WITH REAGENT, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.66450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 248 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH P 101 O HOH P 104 1.99 REMARK 500 O HOH A 548 O HOH A 634 2.07 REMARK 500 O HOH A 604 O HOH A 796 2.07 REMARK 500 O HOH A 700 O HOH A 789 2.09 REMARK 500 O HOH A 510 O HOH A 795 2.14 REMARK 500 O HOH A 742 O HOH P 119 2.14 REMARK 500 OP1 DC T 6 O HOH T 101 2.15 REMARK 500 OE2 GLU A 147 O HOH A 501 2.18 REMARK 500 O HOH A 689 O HOH A 796 2.18 REMARK 500 O5' DG P 7 O HOH P 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 178 -154.09 -100.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 95.4 REMARK 620 3 VAL A 65 O 88.3 96.2 REMARK 620 4 HOH A 768 O 96.0 93.9 168.6 REMARK 620 5 DC D 3 OP1 165.5 98.6 86.5 86.8 REMARK 620 6 HOH D 105 O 87.5 176.9 82.8 86.9 78.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 101 O REMARK 620 2 VAL A 103 O 96.7 REMARK 620 3 ILE A 106 O 97.3 92.2 REMARK 620 4 HOH A 752 O 83.1 93.2 174.4 REMARK 620 5 DG P 9 OP1 164.0 92.9 95.2 83.5 REMARK 620 6 HOH P 106 O 80.3 175.0 92.1 82.5 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 ASP A 192 OD2 96.3 REMARK 620 3 1GC A 405 O1B 172.8 85.4 REMARK 620 4 1GC A 405 O2A 97.4 88.2 89.6 REMARK 620 5 1GC A 405 O2G 90.7 171.9 87.1 94.8 REMARK 620 6 HOH A 649 O 86.1 85.1 87.1 172.7 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD2 REMARK 620 2 ASP A 192 OD1 103.0 REMARK 620 3 ASP A 256 OD2 87.7 95.4 REMARK 620 4 1GC A 405 O2A 94.7 94.0 169.5 REMARK 620 5 HOH A 546 O 79.0 173.9 90.4 80.1 REMARK 620 6 DC P 10 O3' 163.1 87.4 78.0 97.8 92.0 REMARK 620 N 1 2 3 4 5 DBREF 9Y1B A 1 335 UNP P06746 DPOLB_HUMAN 1 335 DBREF 9Y1B T 1 16 PDB 9Y1B 9Y1B 1 16 DBREF 9Y1B P 1 10 PDB 9Y1B 9Y1B 1 10 DBREF 9Y1B D 1 5 PDB 9Y1B 9Y1B 1 5 SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU ILE SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU SEQRES 1 T 16 DC DC DG DA DC DC DG DC DG DC DA DT DC SEQRES 2 T 16 DA DG DC SEQRES 1 P 10 DG DC DT DG DA DT DG DC DG DC SEQRES 1 D 5 DG DT DC DG DG HET NA A 401 1 HET NA A 402 1 HET MG A 403 1 HET MG A 404 1 HET 1GC A 405 31 HET CL A 406 1 HET CL A 407 1 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM 1GC 2'-DEOXY-5'-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY) HETNAM 2 1GC PHOSPHORYL]METHYL}PHOSPHORYL]GUANOSINE HETNAM CL CHLORIDE ION FORMUL 5 NA 2(NA 1+) FORMUL 7 MG 2(MG 2+) FORMUL 9 1GC C11 H18 N5 O12 P3 FORMUL 10 CL 2(CL 1-) FORMUL 12 HOH *415(H2 O) HELIX 1 AA1 ASN A 12 VAL A 29 1 18 HELIX 2 AA2 ALA A 32 LYS A 48 1 17 HELIX 3 AA3 SER A 55 LYS A 61 1 7 HELIX 4 AA4 GLY A 66 GLY A 80 1 15 HELIX 5 AA5 LEU A 82 ASP A 91 1 10 HELIX 6 AA6 ASP A 91 THR A 101 1 11 HELIX 7 AA7 GLY A 107 GLU A 117 1 11 HELIX 8 AA8 THR A 121 ASN A 128 1 8 HELIX 9 AA9 GLU A 129 LEU A 132 5 4 HELIX 10 AB1 ASN A 133 TYR A 142 1 10 HELIX 11 AB2 TYR A 142 LYS A 148 1 7 HELIX 12 AB3 ARG A 152 ASP A 170 1 19 HELIX 13 AB4 CYS A 178 ARG A 183 1 6 HELIX 14 AB5 LYS A 209 VAL A 221 1 13 HELIX 15 AB6 PRO A 261 ASP A 263 5 3 HELIX 16 AB7 GLN A 264 GLY A 274 1 11 HELIX 17 AB8 SER A 275 LYS A 289 1 15 HELIX 18 AB9 SER A 315 ILE A 323 1 9 HELIX 19 AC1 GLU A 329 ARG A 333 5 5 SHEET 1 AA1 2 ILE A 150 PRO A 151 0 SHEET 2 AA1 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 AA2 5 ILE A 174 VAL A 177 0 SHEET 2 AA2 5 MET A 191 THR A 196 -1 O LEU A 194 N THR A 176 SHEET 3 AA2 5 ARG A 253 LEU A 259 1 O ARG A 258 N LEU A 195 SHEET 4 AA2 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 AA2 5 ILE A 224 LYS A 230 -1 N LEU A 228 O MET A 236 SHEET 1 AA3 2 PHE A 291 ILE A 293 0 SHEET 2 AA3 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 LINK O LYS A 60 NA NA A 401 1555 1555 2.50 LINK O LEU A 62 NA NA A 401 1555 1555 2.23 LINK O VAL A 65 NA NA A 401 1555 1555 2.43 LINK O THR A 101 NA NA A 402 1555 1555 2.22 LINK O VAL A 103 NA NA A 402 1555 1555 2.45 LINK O ILE A 106 NA NA A 402 1555 1555 2.24 LINK OD1 ASP A 190 MG MG A 403 1555 1555 1.97 LINK OD2 ASP A 190 MG MG A 404 1555 1555 2.08 LINK OD2 ASP A 192 MG MG A 403 1555 1555 2.16 LINK OD1 ASP A 192 MG MG A 404 1555 1555 2.04 LINK OD2 ASP A 256 MG MG A 404 1555 1555 2.19 LINK NA NA A 401 O HOH A 768 1555 1555 2.68 LINK NA NA A 401 OP1 DC D 3 1555 1555 2.59 LINK NA NA A 401 O HOH D 105 1555 1555 2.85 LINK NA NA A 402 O HOH A 752 1555 1555 2.64 LINK NA NA A 402 OP1 DG P 9 1555 1555 2.51 LINK NA NA A 402 O HOH P 106 1555 1555 2.45 LINK MG MG A 403 O1B 1GC A 405 1555 1555 2.09 LINK MG MG A 403 O2A 1GC A 405 1555 1555 2.16 LINK MG MG A 403 O2G 1GC A 405 1555 1555 2.02 LINK MG MG A 403 O HOH A 649 1555 1555 2.20 LINK MG MG A 404 O2A 1GC A 405 1555 1555 2.19 LINK MG MG A 404 O HOH A 546 1555 1555 2.20 LINK MG MG A 404 O3' DC P 10 1555 1555 2.23 CISPEP 1 GLY A 274 SER A 275 0 3.80 CRYST1 50.454 79.329 55.260 90.00 107.34 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019820 0.000000 0.006188 0.00000 SCALE2 0.000000 0.012606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018958 0.00000 CONECT 396 3292 CONECT 414 3292 CONECT 433 3292 CONECT 718 3293 CONECT 736 3293 CONECT 753 3293 CONECT 1437 3294 CONECT 1438 3295 CONECT 1453 3295 CONECT 1454 3294 CONECT 1982 3295 CONECT 3144 3293 CONECT 3173 3295 CONECT 3229 3292 CONECT 3292 396 414 433 3229 CONECT 3292 3596 3736 CONECT 3293 718 736 753 3144 CONECT 3293 3580 3703 CONECT 3294 1437 1454 3312 3315 CONECT 3294 3317 3477 CONECT 3295 1438 1453 1982 3173 CONECT 3295 3315 3374 CONECT 3296 3297 3302 CONECT 3297 3296 3298 3299 CONECT 3298 3297 CONECT 3299 3297 3300 CONECT 3300 3299 3301 3306 CONECT 3301 3300 3302 3304 CONECT 3302 3296 3301 3303 CONECT 3303 3302 CONECT 3304 3301 3305 CONECT 3305 3304 3306 CONECT 3306 3300 3305 3310 CONECT 3307 3311 3315 3320 3326 CONECT 3308 3312 3316 3320 3321 CONECT 3309 3313 3317 3321 3322 CONECT 3310 3306 3314 3324 CONECT 3311 3307 CONECT 3312 3294 3308 CONECT 3313 3309 CONECT 3314 3310 3318 CONECT 3315 3294 3295 3307 CONECT 3316 3308 CONECT 3317 3294 3309 CONECT 3318 3314 3319 3323 CONECT 3319 3318 CONECT 3320 3307 3308 CONECT 3321 3308 3309 CONECT 3322 3309 CONECT 3323 3318 3324 3325 CONECT 3324 3310 3323 CONECT 3325 3323 3326 CONECT 3326 3307 3325 CONECT 3374 3295 CONECT 3477 3294 CONECT 3580 3293 CONECT 3596 3292 CONECT 3703 3293 CONECT 3736 3292 MASTER 453 0 7 19 9 0 0 6 3691 4 59 30 END