data_9Y7J # _entry.id 9Y7J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9Y7J pdb_00009y7j 10.2210/pdb9y7j/pdb WWPDB D_1000298328 ? ? EMDB EMD-72657 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-02-25 ? 2 'EM metadata' 1 0 2026-02-25 ? 3 FSC 1 0 2026-02-25 ? 4 'Half map' 1 0 2026-02-25 1 5 'Half map' 1 0 2026-02-25 2 6 Image 1 0 2026-02-25 ? 7 'Primary map' 1 0 2026-02-25 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9Y7J _pdbx_database_status.recvd_initial_deposition_date 2025-09-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'unbound CA hexamer' EMD-71816 'other EM volume' EMDB 'unbound CA hexamer' EMD-71817 'other EM volume' PDB 'unbound CA hexamer' 9PRY unspecified PDB 'unbound CA hexamer' 9PRZ unspecified EMDB 'HIV-1 CA hexamer from purified viral cores bound to lenacapavir, C6 symmetry' EMD-72657 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 owen@biochem.utah.edu Owen Pornillos ? 'principal investigator/group leader' 0000-0001-9056-5002 3 barbie.pornillos@cores.utah.edu Barbie Ganser-Pornillos ? 'principal investigator/group leader' 0000-0001-6453-3891 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Barros dos Santos, N.F.' 1 0000-0002-1353-4613 'Ganser-Pornillos, B.K.' 2 0000-0001-6453-3891 'Pornillos, O.' 3 0000-0001-9056-5002 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'HIV-1 CA hexamer from purified viral cores bound to lenacapavir, C6 symmetry' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Barros dos Santos, N.F.' 1 0000-0002-1353-4613 primary 'Ganser-Pornillos, B.K.' 2 0000-0001-6453-3891 primary 'Pornillos, O.' 3 0000-0001-9056-5002 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Capsid protein p24' 25558.275 1 ? ? ? ? 2 non-polymer syn Lenacapavir 968.282 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name CA # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEW DRLHPVQAGPVAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPSSILDIRQGPKES FRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL ; _entity_poly.pdbx_seq_one_letter_code_can ;PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEW DRLHPVQAGPVAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPSSILDIRQGPKES FRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL ; _entity_poly.pdbx_strand_id L _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name Lenacapavir _pdbx_entity_nonpoly.comp_id QNG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ILE n 1 3 VAL n 1 4 GLN n 1 5 ASN n 1 6 ILE n 1 7 GLN n 1 8 GLY n 1 9 GLN n 1 10 MET n 1 11 VAL n 1 12 HIS n 1 13 GLN n 1 14 ALA n 1 15 ILE n 1 16 SER n 1 17 PRO n 1 18 ARG n 1 19 THR n 1 20 LEU n 1 21 ASN n 1 22 ALA n 1 23 TRP n 1 24 VAL n 1 25 LYS n 1 26 VAL n 1 27 VAL n 1 28 GLU n 1 29 GLU n 1 30 LYS n 1 31 ALA n 1 32 PHE n 1 33 SER n 1 34 PRO n 1 35 GLU n 1 36 VAL n 1 37 ILE n 1 38 PRO n 1 39 MET n 1 40 PHE n 1 41 SER n 1 42 ALA n 1 43 LEU n 1 44 SER n 1 45 GLU n 1 46 GLY n 1 47 ALA n 1 48 THR n 1 49 PRO n 1 50 GLN n 1 51 ASP n 1 52 LEU n 1 53 ASN n 1 54 THR n 1 55 MET n 1 56 LEU n 1 57 ASN n 1 58 THR n 1 59 VAL n 1 60 GLY n 1 61 GLY n 1 62 HIS n 1 63 GLN n 1 64 ALA n 1 65 ALA n 1 66 MET n 1 67 GLN n 1 68 MET n 1 69 LEU n 1 70 LYS n 1 71 GLU n 1 72 THR n 1 73 ILE n 1 74 ASN n 1 75 GLU n 1 76 GLU n 1 77 ALA n 1 78 ALA n 1 79 GLU n 1 80 TRP n 1 81 ASP n 1 82 ARG n 1 83 LEU n 1 84 HIS n 1 85 PRO n 1 86 VAL n 1 87 GLN n 1 88 ALA n 1 89 GLY n 1 90 PRO n 1 91 VAL n 1 92 ALA n 1 93 PRO n 1 94 GLY n 1 95 GLN n 1 96 MET n 1 97 ARG n 1 98 GLU n 1 99 PRO n 1 100 ARG n 1 101 GLY n 1 102 SER n 1 103 ASP n 1 104 ILE n 1 105 ALA n 1 106 GLY n 1 107 THR n 1 108 THR n 1 109 SER n 1 110 THR n 1 111 LEU n 1 112 GLN n 1 113 GLU n 1 114 GLN n 1 115 ILE n 1 116 GLY n 1 117 TRP n 1 118 MET n 1 119 THR n 1 120 ASN n 1 121 ASN n 1 122 PRO n 1 123 PRO n 1 124 ILE n 1 125 PRO n 1 126 VAL n 1 127 GLY n 1 128 GLU n 1 129 ILE n 1 130 TYR n 1 131 LYS n 1 132 ARG n 1 133 TRP n 1 134 ILE n 1 135 ILE n 1 136 LEU n 1 137 GLY n 1 138 LEU n 1 139 ASN n 1 140 LYS n 1 141 ILE n 1 142 VAL n 1 143 ARG n 1 144 MET n 1 145 TYR n 1 146 SER n 1 147 PRO n 1 148 SER n 1 149 SER n 1 150 ILE n 1 151 LEU n 1 152 ASP n 1 153 ILE n 1 154 ARG n 1 155 GLN n 1 156 GLY n 1 157 PRO n 1 158 LYS n 1 159 GLU n 1 160 SER n 1 161 PHE n 1 162 ARG n 1 163 ASP n 1 164 TYR n 1 165 VAL n 1 166 ASP n 1 167 ARG n 1 168 PHE n 1 169 TYR n 1 170 LYS n 1 171 THR n 1 172 LEU n 1 173 ARG n 1 174 ALA n 1 175 GLU n 1 176 GLN n 1 177 ALA n 1 178 SER n 1 179 GLN n 1 180 GLU n 1 181 VAL n 1 182 LYS n 1 183 ASN n 1 184 TRP n 1 185 MET n 1 186 THR n 1 187 GLU n 1 188 THR n 1 189 LEU n 1 190 LEU n 1 191 VAL n 1 192 GLN n 1 193 ASN n 1 194 ALA n 1 195 ASN n 1 196 PRO n 1 197 ASP n 1 198 CYS n 1 199 LYS n 1 200 THR n 1 201 ILE n 1 202 LEU n 1 203 LYS n 1 204 ALA n 1 205 LEU n 1 206 GLY n 1 207 PRO n 1 208 GLY n 1 209 ALA n 1 210 THR n 1 211 LEU n 1 212 GLU n 1 213 GLU n 1 214 MET n 1 215 MET n 1 216 THR n 1 217 ALA n 1 218 CYS n 1 219 GLN n 1 220 GLY n 1 221 VAL n 1 222 GLY n 1 223 GLY n 1 224 PRO n 1 225 GLY n 1 226 HIS n 1 227 LYS n 1 228 ALA n 1 229 ARG n 1 230 VAL n 1 231 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 231 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain SG3 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name human _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line 293T _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type provirus _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSG3deltaEnv _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 QNG non-polymer . Lenacapavir 'Sunlenca; GS-CA1; GS-6207' 'C39 H32 Cl F10 N7 O5 S2' 968.282 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO L . n A 1 2 ILE 2 2 2 ILE ILE L . n A 1 3 VAL 3 3 3 VAL VAL L . n A 1 4 GLN 4 4 4 GLN GLN L . n A 1 5 ASN 5 5 5 ASN ASN L . n A 1 6 ILE 6 6 6 ILE ILE L . n A 1 7 GLN 7 7 7 GLN GLN L . n A 1 8 GLY 8 8 8 GLY GLY L . n A 1 9 GLN 9 9 9 GLN GLN L . n A 1 10 MET 10 10 10 MET MET L . n A 1 11 VAL 11 11 11 VAL VAL L . n A 1 12 HIS 12 12 12 HIS HIS L . n A 1 13 GLN 13 13 13 GLN GLN L . n A 1 14 ALA 14 14 14 ALA ALA L . n A 1 15 ILE 15 15 15 ILE ILE L . n A 1 16 SER 16 16 16 SER SER L . n A 1 17 PRO 17 17 17 PRO PRO L . n A 1 18 ARG 18 18 18 ARG ARG L . n A 1 19 THR 19 19 19 THR THR L . n A 1 20 LEU 20 20 20 LEU LEU L . n A 1 21 ASN 21 21 21 ASN ASN L . n A 1 22 ALA 22 22 22 ALA ALA L . n A 1 23 TRP 23 23 23 TRP TRP L . n A 1 24 VAL 24 24 24 VAL VAL L . n A 1 25 LYS 25 25 25 LYS LYS L . n A 1 26 VAL 26 26 26 VAL VAL L . n A 1 27 VAL 27 27 27 VAL VAL L . n A 1 28 GLU 28 28 28 GLU GLU L . n A 1 29 GLU 29 29 29 GLU GLU L . n A 1 30 LYS 30 30 30 LYS LYS L . n A 1 31 ALA 31 31 31 ALA ALA L . n A 1 32 PHE 32 32 32 PHE PHE L . n A 1 33 SER 33 33 33 SER SER L . n A 1 34 PRO 34 34 34 PRO PRO L . n A 1 35 GLU 35 35 35 GLU GLU L . n A 1 36 VAL 36 36 36 VAL VAL L . n A 1 37 ILE 37 37 37 ILE ILE L . n A 1 38 PRO 38 38 38 PRO PRO L . n A 1 39 MET 39 39 39 MET MET L . n A 1 40 PHE 40 40 40 PHE PHE L . n A 1 41 SER 41 41 41 SER SER L . n A 1 42 ALA 42 42 42 ALA ALA L . n A 1 43 LEU 43 43 43 LEU LEU L . n A 1 44 SER 44 44 44 SER SER L . n A 1 45 GLU 45 45 45 GLU GLU L . n A 1 46 GLY 46 46 46 GLY GLY L . n A 1 47 ALA 47 47 47 ALA ALA L . n A 1 48 THR 48 48 48 THR THR L . n A 1 49 PRO 49 49 49 PRO PRO L . n A 1 50 GLN 50 50 50 GLN GLN L . n A 1 51 ASP 51 51 51 ASP ASP L . n A 1 52 LEU 52 52 52 LEU LEU L . n A 1 53 ASN 53 53 53 ASN ASN L . n A 1 54 THR 54 54 54 THR THR L . n A 1 55 MET 55 55 55 MET MET L . n A 1 56 LEU 56 56 56 LEU LEU L . n A 1 57 ASN 57 57 57 ASN ASN L . n A 1 58 THR 58 58 58 THR THR L . n A 1 59 VAL 59 59 59 VAL VAL L . n A 1 60 GLY 60 60 60 GLY GLY L . n A 1 61 GLY 61 61 61 GLY GLY L . n A 1 62 HIS 62 62 62 HIS HIS L . n A 1 63 GLN 63 63 63 GLN GLN L . n A 1 64 ALA 64 64 64 ALA ALA L . n A 1 65 ALA 65 65 65 ALA ALA L . n A 1 66 MET 66 66 66 MET MET L . n A 1 67 GLN 67 67 67 GLN GLN L . n A 1 68 MET 68 68 68 MET MET L . n A 1 69 LEU 69 69 69 LEU LEU L . n A 1 70 LYS 70 70 70 LYS LYS L . n A 1 71 GLU 71 71 71 GLU GLU L . n A 1 72 THR 72 72 72 THR THR L . n A 1 73 ILE 73 73 73 ILE ILE L . n A 1 74 ASN 74 74 74 ASN ASN L . n A 1 75 GLU 75 75 75 GLU GLU L . n A 1 76 GLU 76 76 76 GLU GLU L . n A 1 77 ALA 77 77 77 ALA ALA L . n A 1 78 ALA 78 78 78 ALA ALA L . n A 1 79 GLU 79 79 79 GLU GLU L . n A 1 80 TRP 80 80 80 TRP TRP L . n A 1 81 ASP 81 81 81 ASP ASP L . n A 1 82 ARG 82 82 82 ARG ARG L . n A 1 83 LEU 83 83 83 LEU LEU L . n A 1 84 HIS 84 84 84 HIS HIS L . n A 1 85 PRO 85 85 85 PRO PRO L . n A 1 86 VAL 86 86 86 VAL VAL L . n A 1 87 GLN 87 87 ? ? ? L . n A 1 88 ALA 88 88 ? ? ? L . n A 1 89 GLY 89 89 ? ? ? L . n A 1 90 PRO 90 90 ? ? ? L . n A 1 91 VAL 91 91 ? ? ? L . n A 1 92 ALA 92 92 ? ? ? L . n A 1 93 PRO 93 93 ? ? ? L . n A 1 94 GLY 94 94 ? ? ? L . n A 1 95 GLN 95 95 ? ? ? L . n A 1 96 MET 96 96 96 MET MET L . n A 1 97 ARG 97 97 97 ARG ARG L . n A 1 98 GLU 98 98 98 GLU GLU L . n A 1 99 PRO 99 99 99 PRO PRO L . n A 1 100 ARG 100 100 100 ARG ARG L . n A 1 101 GLY 101 101 101 GLY GLY L . n A 1 102 SER 102 102 102 SER SER L . n A 1 103 ASP 103 103 103 ASP ASP L . n A 1 104 ILE 104 104 104 ILE ILE L . n A 1 105 ALA 105 105 105 ALA ALA L . n A 1 106 GLY 106 106 106 GLY GLY L . n A 1 107 THR 107 107 107 THR THR L . n A 1 108 THR 108 108 108 THR THR L . n A 1 109 SER 109 109 109 SER SER L . n A 1 110 THR 110 110 110 THR THR L . n A 1 111 LEU 111 111 111 LEU LEU L . n A 1 112 GLN 112 112 112 GLN GLN L . n A 1 113 GLU 113 113 113 GLU GLU L . n A 1 114 GLN 114 114 114 GLN GLN L . n A 1 115 ILE 115 115 115 ILE ILE L . n A 1 116 GLY 116 116 116 GLY GLY L . n A 1 117 TRP 117 117 117 TRP TRP L . n A 1 118 MET 118 118 118 MET MET L . n A 1 119 THR 119 119 119 THR THR L . n A 1 120 ASN 120 120 120 ASN ASN L . n A 1 121 ASN 121 121 121 ASN ASN L . n A 1 122 PRO 122 122 122 PRO PRO L . n A 1 123 PRO 123 123 123 PRO PRO L . n A 1 124 ILE 124 124 124 ILE ILE L . n A 1 125 PRO 125 125 125 PRO PRO L . n A 1 126 VAL 126 126 126 VAL VAL L . n A 1 127 GLY 127 127 127 GLY GLY L . n A 1 128 GLU 128 128 128 GLU GLU L . n A 1 129 ILE 129 129 129 ILE ILE L . n A 1 130 TYR 130 130 130 TYR TYR L . n A 1 131 LYS 131 131 131 LYS LYS L . n A 1 132 ARG 132 132 132 ARG ARG L . n A 1 133 TRP 133 133 133 TRP TRP L . n A 1 134 ILE 134 134 134 ILE ILE L . n A 1 135 ILE 135 135 135 ILE ILE L . n A 1 136 LEU 136 136 136 LEU LEU L . n A 1 137 GLY 137 137 137 GLY GLY L . n A 1 138 LEU 138 138 138 LEU LEU L . n A 1 139 ASN 139 139 139 ASN ASN L . n A 1 140 LYS 140 140 140 LYS LYS L . n A 1 141 ILE 141 141 141 ILE ILE L . n A 1 142 VAL 142 142 142 VAL VAL L . n A 1 143 ARG 143 143 143 ARG ARG L . n A 1 144 MET 144 144 144 MET MET L . n A 1 145 TYR 145 145 145 TYR TYR L . n A 1 146 SER 146 146 146 SER SER L . n A 1 147 PRO 147 147 147 PRO PRO L . n A 1 148 SER 148 148 148 SER SER L . n A 1 149 SER 149 149 149 SER SER L . n A 1 150 ILE 150 150 150 ILE ILE L . n A 1 151 LEU 151 151 151 LEU LEU L . n A 1 152 ASP 152 152 152 ASP ASP L . n A 1 153 ILE 153 153 153 ILE ILE L . n A 1 154 ARG 154 154 154 ARG ARG L . n A 1 155 GLN 155 155 155 GLN GLN L . n A 1 156 GLY 156 156 156 GLY GLY L . n A 1 157 PRO 157 157 157 PRO PRO L . n A 1 158 LYS 158 158 158 LYS LYS L . n A 1 159 GLU 159 159 159 GLU GLU L . n A 1 160 SER 160 160 160 SER SER L . n A 1 161 PHE 161 161 161 PHE PHE L . n A 1 162 ARG 162 162 162 ARG ARG L . n A 1 163 ASP 163 163 163 ASP ASP L . n A 1 164 TYR 164 164 164 TYR TYR L . n A 1 165 VAL 165 165 165 VAL VAL L . n A 1 166 ASP 166 166 166 ASP ASP L . n A 1 167 ARG 167 167 167 ARG ARG L . n A 1 168 PHE 168 168 168 PHE PHE L . n A 1 169 TYR 169 169 169 TYR TYR L . n A 1 170 LYS 170 170 170 LYS LYS L . n A 1 171 THR 171 171 171 THR THR L . n A 1 172 LEU 172 172 172 LEU LEU L . n A 1 173 ARG 173 173 173 ARG ARG L . n A 1 174 ALA 174 174 174 ALA ALA L . n A 1 175 GLU 175 175 175 GLU GLU L . n A 1 176 GLN 176 176 176 GLN GLN L . n A 1 177 ALA 177 177 177 ALA ALA L . n A 1 178 SER 178 178 178 SER SER L . n A 1 179 GLN 179 179 179 GLN GLN L . n A 1 180 GLU 180 180 180 GLU GLU L . n A 1 181 VAL 181 181 181 VAL VAL L . n A 1 182 LYS 182 182 182 LYS LYS L . n A 1 183 ASN 183 183 183 ASN ASN L . n A 1 184 TRP 184 184 184 TRP TRP L . n A 1 185 MET 185 185 185 MET MET L . n A 1 186 THR 186 186 186 THR THR L . n A 1 187 GLU 187 187 187 GLU GLU L . n A 1 188 THR 188 188 188 THR THR L . n A 1 189 LEU 189 189 189 LEU LEU L . n A 1 190 LEU 190 190 190 LEU LEU L . n A 1 191 VAL 191 191 191 VAL VAL L . n A 1 192 GLN 192 192 192 GLN GLN L . n A 1 193 ASN 193 193 193 ASN ASN L . n A 1 194 ALA 194 194 194 ALA ALA L . n A 1 195 ASN 195 195 195 ASN ASN L . n A 1 196 PRO 196 196 196 PRO PRO L . n A 1 197 ASP 197 197 197 ASP ASP L . n A 1 198 CYS 198 198 198 CYS CYS L . n A 1 199 LYS 199 199 199 LYS LYS L . n A 1 200 THR 200 200 200 THR THR L . n A 1 201 ILE 201 201 201 ILE ILE L . n A 1 202 LEU 202 202 202 LEU LEU L . n A 1 203 LYS 203 203 203 LYS LYS L . n A 1 204 ALA 204 204 204 ALA ALA L . n A 1 205 LEU 205 205 205 LEU LEU L . n A 1 206 GLY 206 206 206 GLY GLY L . n A 1 207 PRO 207 207 207 PRO PRO L . n A 1 208 GLY 208 208 208 GLY GLY L . n A 1 209 ALA 209 209 209 ALA ALA L . n A 1 210 THR 210 210 210 THR THR L . n A 1 211 LEU 211 211 211 LEU LEU L . n A 1 212 GLU 212 212 212 GLU GLU L . n A 1 213 GLU 213 213 213 GLU GLU L . n A 1 214 MET 214 214 214 MET MET L . n A 1 215 MET 215 215 215 MET MET L . n A 1 216 THR 216 216 216 THR THR L . n A 1 217 ALA 217 217 217 ALA ALA L . n A 1 218 CYS 218 218 218 CYS CYS L . n A 1 219 GLN 219 219 219 GLN GLN L . n A 1 220 GLY 220 220 220 GLY GLY L . n A 1 221 VAL 221 221 221 VAL VAL L . n A 1 222 GLY 222 222 ? ? ? L . n A 1 223 GLY 223 223 ? ? ? L . n A 1 224 PRO 224 224 ? ? ? L . n A 1 225 GLY 225 225 ? ? ? L . n A 1 226 HIS 226 226 ? ? ? L . n A 1 227 LYS 227 227 ? ? ? L . n A 1 228 ALA 228 228 ? ? ? L . n A 1 229 ARG 229 229 ? ? ? L . n A 1 230 VAL 230 230 ? ? ? L . n A 1 231 LEU 231 231 ? ? ? L . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id QNG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id QNG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id QNG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 300 _pdbx_nonpoly_scheme.auth_seq_num 300 _pdbx_nonpoly_scheme.pdb_mon_id QNG _pdbx_nonpoly_scheme.auth_mon_id QNG _pdbx_nonpoly_scheme.pdb_strand_id L _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9Y7J _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9Y7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9Y7J _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9Y7J _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.83 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 1765 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.426 ? 2413 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 14.948 ? 659 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.038 ? 262 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 303 ? f_plane_restr ? ? ? # _struct.entry_id 9Y7J _struct.title 'HIV-1 CA hexamer from purified viral cores bound to lenacapavir, C6 symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9Y7J _struct_keywords.text 'capsid, native purified HIV cores, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1B9 _struct_ref.pdbx_db_accession Q73368 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEW DRLHPVQAGPVAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPSSILDIKQGPKEP FRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVL ; _struct_ref.pdbx_align_begin 133 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9Y7J _struct_ref_seq.pdbx_strand_id L _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 231 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q73368 _struct_ref_seq.db_align_beg 133 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 363 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 231 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9Y7J ARG L 154 ? UNP Q73368 LYS 286 conflict 154 1 1 9Y7J SER L 160 ? UNP Q73368 PRO 292 conflict 160 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 11-meric _pdbx_struct_assembly.oligomeric_count 11 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 2 'point symmetry operation' ? ? 0.5 -0.866025 0.0 221.54199 0.866025 0.5 0.0 -59.36200 0.0 0.0 1.0 0.0 3 'point symmetry operation' ? ? -0.5 -0.866025 0.0 383.72198 0.866025 -0.5 0.0 102.81800 0.0 0.0 1.0 0.0 4 'point symmetry operation' ? ? -1.0 0.0 0.0 324.35999 0.0 -1.0 0.0 324.35999 0.0 0.0 1.0 0.0 5 'point symmetry operation' ? ? -0.5 0.866025 0.0 102.81800 -0.866025 -0.5 0.0 383.72198 0.0 0.0 1.0 0.0 6 'point symmetry operation' ? ? 0.5 0.866025 0.0 -59.36200 -0.866025 0.5 0.0 221.54199 0.0 0.0 1.0 0.0 7 'point symmetry operation' ? ? 0.5 -0.866025 0.0 221.54199 0.866025 0.5 0.0 -59.36200 0.0 0.0 1.0 0.0 8 'point symmetry operation' ? ? -0.5 -0.866025 0.0 383.72198 0.866025 -0.5 0.0 102.81800 0.0 0.0 1.0 0.0 9 'point symmetry operation' ? ? -1.0 0.0 0.0 324.35999 0.0 -1.0 0.0 324.35999 0.0 0.0 1.0 0.0 10 'point symmetry operation' ? ? -0.5 0.866025 0.0 102.81800 -0.866025 -0.5 0.0 383.72198 0.0 0.0 1.0 0.0 11 'point symmetry operation' ? ? 0.5 0.866025 0.0 -59.36200 -0.866025 0.5 0.0 221.54199 0.0 0.0 1.0 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 16 ? LYS A 30 ? SER L 16 LYS L 30 1 ? 15 HELX_P HELX_P2 AA2 GLU A 35 ? SER A 44 ? GLU L 35 SER L 44 1 ? 10 HELX_P HELX_P3 AA3 THR A 48 ? THR A 58 ? THR L 48 THR L 58 1 ? 11 HELX_P HELX_P4 AA4 HIS A 62 ? HIS A 84 ? HIS L 62 HIS L 84 1 ? 23 HELX_P HELX_P5 AA5 ARG A 100 ? ALA A 105 ? ARG L 100 ALA L 105 1 ? 6 HELX_P HELX_P6 AA6 THR A 110 ? ASN A 120 ? THR L 110 ASN L 120 1 ? 11 HELX_P HELX_P7 AA7 PRO A 125 ? TYR A 145 ? PRO L 125 TYR L 145 1 ? 21 HELX_P HELX_P8 AA8 SER A 149 ? ILE A 153 ? SER L 149 ILE L 153 5 ? 5 HELX_P HELX_P9 AA9 SER A 160 ? GLU A 175 ? SER L 160 GLU L 175 1 ? 16 HELX_P HELX_P10 AB1 SER A 178 ? ASN A 193 ? SER L 178 ASN L 193 1 ? 16 HELX_P HELX_P11 AB2 ASN A 195 ? GLY A 206 ? ASN L 195 GLY L 206 1 ? 12 HELX_P HELX_P12 AB3 THR A 210 ? ALA A 217 ? THR L 210 ALA L 217 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 121 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 121 _struct_mon_prot_cis.auth_asym_id L _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 122 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 122 _struct_mon_prot_cis.pdbx_auth_asym_id_2 L _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.09 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 2 ? GLN A 4 ? ILE L 2 GLN L 4 AA1 2 MET A 10 ? HIS A 12 ? MET L 10 HIS L 12 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id L _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 11 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id L _pdbx_struct_sheet_hbond.range_2_auth_seq_id 11 # _pdbx_entry_details.entry_id 9Y7J _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id L _pdbx_validate_torsion.auth_seq_id 31 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 55.24 _pdbx_validate_torsion.psi -144.70 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9Y7J _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'Real-space refinement' _em_3d_fitting.overall_b_value 100.1 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol OTHER # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 7urn _em_3d_fitting_list.pdb_chain_id L _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id L _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 7urn _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9Y7J _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.83 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 1064761 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Human immunodeficiency virus 1' _em_entity_assembly.details ;Proviral plasmid pSG3deltaEnv was transfected into 293T cells. Virus particles released into the culture media were harvested. Viral cores were purified. ; _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9Y7J _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty NO _em_virus_entity.details ? # _em_vitrification.entry_id 9Y7J _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9Y7J _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9Y7J _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L GLN 87 ? A GLN 87 2 1 Y 1 L ALA 88 ? A ALA 88 3 1 Y 1 L GLY 89 ? A GLY 89 4 1 Y 1 L PRO 90 ? A PRO 90 5 1 Y 1 L VAL 91 ? A VAL 91 6 1 Y 1 L ALA 92 ? A ALA 92 7 1 Y 1 L PRO 93 ? A PRO 93 8 1 Y 1 L GLY 94 ? A GLY 94 9 1 Y 1 L GLN 95 ? A GLN 95 10 1 Y 1 L GLY 222 ? A GLY 222 11 1 Y 1 L GLY 223 ? A GLY 223 12 1 Y 1 L PRO 224 ? A PRO 224 13 1 Y 1 L GLY 225 ? A GLY 225 14 1 Y 1 L HIS 226 ? A HIS 226 15 1 Y 1 L LYS 227 ? A LYS 227 16 1 Y 1 L ALA 228 ? A ALA 228 17 1 Y 1 L ARG 229 ? A ARG 229 18 1 Y 1 L VAL 230 ? A VAL 230 19 1 Y 1 L LEU 231 ? A LEU 231 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 QNG C01 C N S 287 QNG C02 C Y N 288 QNG C03 C Y N 289 QNG C04 C Y N 290 QNG C05 C Y N 291 QNG C07 C Y N 292 QNG C08 C Y N 293 QNG C09 C Y N 294 QNG C10 C Y N 295 QNG C11 C Y N 296 QNG C12 C Y N 297 QNG C13 C Y N 298 QNG C16 C Y N 299 QNG C18 C N N 300 QNG C19 C N N 301 QNG C20 C Y N 302 QNG C21 C Y N 303 QNG C22 C Y N 304 QNG C23 C Y N 305 QNG C24 C Y N 306 QNG C25 C Y N 307 QNG C28 C N N 308 QNG C30 C N N 309 QNG C31 C Y N 310 QNG C32 C Y N 311 QNG C35 C Y N 312 QNG C36 C N S 313 QNG C37 C N R 314 QNG C38 C N N 315 QNG C39 C N N 316 QNG C40 C N N 317 QNG C44 C N N 318 QNG C45 C N N 319 QNG C46 C N N 320 QNG C49 C N N 321 QNG C54 C N N 322 QNG C56 C N N 323 QNG C58 C N N 324 QNG C60 C N N 325 QNG F26 F N N 326 QNG F27 F N N 327 QNG F41 F N N 328 QNG F42 F N N 329 QNG F52 F N N 330 QNG F53 F N N 331 QNG F61 F N N 332 QNG F62 F N N 333 QNG F63 F N N 334 QNG F64 F N N 335 QNG N06 N Y N 336 QNG N14 N Y N 337 QNG N15 N Y N 338 QNG N17 N N N 339 QNG N33 N Y N 340 QNG N34 N Y N 341 QNG N43 N N N 342 QNG O29 O N N 343 QNG O50 O N N 344 QNG O51 O N N 345 QNG O57 O N N 346 QNG O59 O N N 347 QNG S48 S N N 348 QNG S55 S N N 349 QNG CL47 CL N N 350 QNG H1 H N N 351 QNG H2 H N N 352 QNG H3 H N N 353 QNG H4 H N N 354 QNG H5 H N N 355 QNG H6 H N N 356 QNG H7 H N N 357 QNG H8 H N N 358 QNG H9 H N N 359 QNG H10 H N N 360 QNG H11 H N N 361 QNG H12 H N N 362 QNG H13 H N N 363 QNG H14 H N N 364 QNG H15 H N N 365 QNG H16 H N N 366 QNG H17 H N N 367 QNG H18 H N N 368 QNG H19 H N N 369 QNG H20 H N N 370 QNG H21 H N N 371 QNG H22 H N N 372 QNG H23 H N N 373 QNG H24 H N N 374 QNG H25 H N N 375 QNG H26 H N N 376 QNG H27 H N N 377 QNG H28 H N N 378 QNG H29 H N N 379 QNG H30 H N N 380 QNG H31 H N N 381 QNG H32 H N N 382 SER N N N N 383 SER CA C N S 384 SER C C N N 385 SER O O N N 386 SER CB C N N 387 SER OG O N N 388 SER OXT O N N 389 SER H H N N 390 SER H2 H N N 391 SER HA H N N 392 SER HB2 H N N 393 SER HB3 H N N 394 SER HG H N N 395 SER HXT H N N 396 THR N N N N 397 THR CA C N S 398 THR C C N N 399 THR O O N N 400 THR CB C N R 401 THR OG1 O N N 402 THR CG2 C N N 403 THR OXT O N N 404 THR H H N N 405 THR H2 H N N 406 THR HA H N N 407 THR HB H N N 408 THR HG1 H N N 409 THR HG21 H N N 410 THR HG22 H N N 411 THR HG23 H N N 412 THR HXT H N N 413 TRP N N N N 414 TRP CA C N S 415 TRP C C N N 416 TRP O O N N 417 TRP CB C N N 418 TRP CG C Y N 419 TRP CD1 C Y N 420 TRP CD2 C Y N 421 TRP NE1 N Y N 422 TRP CE2 C Y N 423 TRP CE3 C Y N 424 TRP CZ2 C Y N 425 TRP CZ3 C Y N 426 TRP CH2 C Y N 427 TRP OXT O N N 428 TRP H H N N 429 TRP H2 H N N 430 TRP HA H N N 431 TRP HB2 H N N 432 TRP HB3 H N N 433 TRP HD1 H N N 434 TRP HE1 H N N 435 TRP HE3 H N N 436 TRP HZ2 H N N 437 TRP HZ3 H N N 438 TRP HH2 H N N 439 TRP HXT H N N 440 TYR N N N N 441 TYR CA C N S 442 TYR C C N N 443 TYR O O N N 444 TYR CB C N N 445 TYR CG C Y N 446 TYR CD1 C Y N 447 TYR CD2 C Y N 448 TYR CE1 C Y N 449 TYR CE2 C Y N 450 TYR CZ C Y N 451 TYR OH O N N 452 TYR OXT O N N 453 TYR H H N N 454 TYR H2 H N N 455 TYR HA H N N 456 TYR HB2 H N N 457 TYR HB3 H N N 458 TYR HD1 H N N 459 TYR HD2 H N N 460 TYR HE1 H N N 461 TYR HE2 H N N 462 TYR HH H N N 463 TYR HXT H N N 464 VAL N N N N 465 VAL CA C N S 466 VAL C C N N 467 VAL O O N N 468 VAL CB C N N 469 VAL CG1 C N N 470 VAL CG2 C N N 471 VAL OXT O N N 472 VAL H H N N 473 VAL H2 H N N 474 VAL HA H N N 475 VAL HB H N N 476 VAL HG11 H N N 477 VAL HG12 H N N 478 VAL HG13 H N N 479 VAL HG21 H N N 480 VAL HG22 H N N 481 VAL HG23 H N N 482 VAL HXT H N N 483 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 QNG C39 C36 sing N N 275 QNG C39 C37 sing N N 276 QNG F53 C40 sing N N 277 QNG F52 C40 sing N N 278 QNG C36 C37 sing N N 279 QNG C36 C31 sing N N 280 QNG C40 C35 sing N N 281 QNG C40 F64 sing N N 282 QNG C37 C38 sing N N 283 QNG C31 C35 sing Y N 284 QNG C31 C32 doub Y N 285 QNG C35 N34 doub Y N 286 QNG F42 C38 sing N N 287 QNG C38 C32 sing N N 288 QNG C38 F41 sing N N 289 QNG C32 N33 sing Y N 290 QNG N34 N33 sing Y N 291 QNG N33 C30 sing N N 292 QNG F26 C24 sing N N 293 QNG C30 C28 sing N N 294 QNG C24 C23 doub Y N 295 QNG C24 C25 sing Y N 296 QNG C23 C22 sing Y N 297 QNG C25 C20 doub Y N 298 QNG C28 O29 doub N N 299 QNG C28 N43 sing N N 300 QNG C22 F27 sing N N 301 QNG C22 C21 doub Y N 302 QNG N43 C01 sing N N 303 QNG O50 S48 doub N N 304 QNG C20 C21 sing Y N 305 QNG C20 C19 sing N N 306 QNG C01 C19 sing N N 307 QNG C01 C05 sing N N 308 QNG O51 S48 doub N N 309 QNG S48 N17 sing N N 310 QNG S48 C49 sing N N 311 QNG N17 C16 sing N N 312 QNG C56 C46 sing N N 313 QNG N15 C16 doub Y N 314 QNG N15 N14 sing Y N 315 QNG C16 C09 sing Y N 316 QNG C18 N14 sing N N 317 QNG C18 C60 sing N N 318 QNG N14 C08 sing Y N 319 QNG C05 N06 doub Y N 320 QNG C05 C13 sing Y N 321 QNG N06 C02 sing Y N 322 QNG C09 C08 doub Y N 323 QNG C09 C10 sing Y N 324 QNG O59 S55 doub N N 325 QNG C08 C07 sing Y N 326 QNG F63 C60 sing N N 327 QNG CL47 C10 sing N N 328 QNG C60 F61 sing N N 329 QNG C60 F62 sing N N 330 QNG C10 C11 doub Y N 331 QNG C46 C45 sing N N 332 QNG C46 S55 sing N N 333 QNG C46 C54 sing N N 334 QNG C07 C13 sing N N 335 QNG C07 C12 doub Y N 336 QNG C45 C44 trip N N 337 QNG C13 C04 doub Y N 338 QNG C44 C02 sing N N 339 QNG C02 C03 doub Y N 340 QNG S55 O57 doub N N 341 QNG S55 C58 sing N N 342 QNG C11 C12 sing Y N 343 QNG C04 C03 sing Y N 344 QNG C01 H1 sing N N 345 QNG C03 H2 sing N N 346 QNG C04 H3 sing N N 347 QNG C11 H4 sing N N 348 QNG C12 H5 sing N N 349 QNG C18 H6 sing N N 350 QNG C18 H7 sing N N 351 QNG C19 H8 sing N N 352 QNG C19 H9 sing N N 353 QNG C21 H10 sing N N 354 QNG C23 H11 sing N N 355 QNG C25 H12 sing N N 356 QNG C30 H13 sing N N 357 QNG C30 H14 sing N N 358 QNG C36 H15 sing N N 359 QNG C37 H16 sing N N 360 QNG C39 H17 sing N N 361 QNG C39 H18 sing N N 362 QNG C49 H19 sing N N 363 QNG C49 H20 sing N N 364 QNG C49 H21 sing N N 365 QNG C54 H22 sing N N 366 QNG C54 H23 sing N N 367 QNG C54 H24 sing N N 368 QNG C56 H25 sing N N 369 QNG C56 H26 sing N N 370 QNG C56 H27 sing N N 371 QNG C58 H28 sing N N 372 QNG C58 H29 sing N N 373 QNG C58 H30 sing N N 374 QNG N17 H31 sing N N 375 QNG N43 H32 sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TRP N CA sing N N 406 TRP N H sing N N 407 TRP N H2 sing N N 408 TRP CA C sing N N 409 TRP CA CB sing N N 410 TRP CA HA sing N N 411 TRP C O doub N N 412 TRP C OXT sing N N 413 TRP CB CG sing N N 414 TRP CB HB2 sing N N 415 TRP CB HB3 sing N N 416 TRP CG CD1 doub Y N 417 TRP CG CD2 sing Y N 418 TRP CD1 NE1 sing Y N 419 TRP CD1 HD1 sing N N 420 TRP CD2 CE2 doub Y N 421 TRP CD2 CE3 sing Y N 422 TRP NE1 CE2 sing Y N 423 TRP NE1 HE1 sing N N 424 TRP CE2 CZ2 sing Y N 425 TRP CE3 CZ3 doub Y N 426 TRP CE3 HE3 sing N N 427 TRP CZ2 CH2 doub Y N 428 TRP CZ2 HZ2 sing N N 429 TRP CZ3 CH2 sing Y N 430 TRP CZ3 HZ3 sing N N 431 TRP CH2 HH2 sing N N 432 TRP OXT HXT sing N N 433 TYR N CA sing N N 434 TYR N H sing N N 435 TYR N H2 sing N N 436 TYR CA C sing N N 437 TYR CA CB sing N N 438 TYR CA HA sing N N 439 TYR C O doub N N 440 TYR C OXT sing N N 441 TYR CB CG sing N N 442 TYR CB HB2 sing N N 443 TYR CB HB3 sing N N 444 TYR CG CD1 doub Y N 445 TYR CG CD2 sing Y N 446 TYR CD1 CE1 sing Y N 447 TYR CD1 HD1 sing N N 448 TYR CD2 CE2 doub Y N 449 TYR CD2 HD2 sing N N 450 TYR CE1 CZ doub Y N 451 TYR CE1 HE1 sing N N 452 TYR CE2 CZ sing Y N 453 TYR CE2 HE2 sing N N 454 TYR CZ OH sing N N 455 TYR OH HH sing N N 456 TYR OXT HXT sing N N 457 VAL N CA sing N N 458 VAL N H sing N N 459 VAL N H2 sing N N 460 VAL CA C sing N N 461 VAL CA CB sing N N 462 VAL CA HA sing N N 463 VAL C O doub N N 464 VAL C OXT sing N N 465 VAL CB CG1 sing N N 466 VAL CB CG2 sing N N 467 VAL CB HB sing N N 468 VAL CG1 HG11 sing N N 469 VAL CG1 HG12 sing N N 470 VAL CG1 HG13 sing N N 471 VAL CG2 HG21 sing N N 472 VAL CG2 HG22 sing N N 473 VAL CG2 HG23 sing N N 474 VAL OXT HXT sing N N 475 # _em_admin.current_status REL _em_admin.deposition_date 2025-09-10 _em_admin.deposition_site RCSB _em_admin.entry_id 9Y7J _em_admin.last_update 2026-02-25 _em_admin.map_release_date 2026-02-25 _em_admin.title 'HIV-1 CA hexamer from purified viral cores bound to lenacapavir, C6 symmetry' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 11676 _em_entity_assembly_naturalsource.organism 'Human immunodeficiency virus 1' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell 293T _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid pSG3deltaEnv _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? ? 'IMAGE ACQUISITION' ? 2 1 ? 1 EPU ? ? MASKING ? 3 1 1 1 ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC ? ? 'LAYERLINE INDEXING' ? 5 1 1 1 ? ? ? 'DIFFRACTION INDEXING' ? 6 1 1 1 ? ? ? 'MODEL FITTING' ? 7 1 1 ? ? ? ? OTHER ? 8 1 1 1 ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' R37AI150479 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' U54AI170856 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7urn _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9Y7J _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL F N O S # loop_ #