data_9YD2 # _entry.id 9YD2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.415 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9YD2 pdb_00009yd2 10.2210/pdb9yd2/pdb WWPDB D_1000300284 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-06-24 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9YD2 _pdbx_database_status.recvd_initial_deposition_date 2025-09-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 ewu@richmond.edu Eugene Wu Y 'principal investigator/group leader' 0000-0002-5189-7036 3 lorena.beese@duke.edu Lorena Beese S. 'principal investigator/group leader' 0000-0003-4925-4733 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wu, E.Y.' 1 0000-0002-5189-7036 'Walsh, A.R.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 0006-2960 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural basis for blockage of DNA synthesis by a thymine dimer lesion in a high-fidelity DNA polymerase' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.5c00781 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Walsh, A.R.' 1 ? primary 'Beese, L.S.' 2 ? primary 'Wu, E.Y.' 3 0000-0002-5189-7036 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase I' 66260.039 1 2.7.7.7 D598A ? ? 2 polymer syn ;DNA (5'-D(*CP*AP*AP*GP*GP*AP*CP*AP*GP*TP*(DDG))-3') ; 3391.250 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*(TTD)P*CP*AP*CP*TP*GP*TP*CP*CP*TP*TP*G)-3') ; 4824.142 1 ? ? ? ? 4 non-polymer syn ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; 491.182 1 ? ? ? ? 5 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 6 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 7 water nat water 18.015 98 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKR AAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIW ELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG VILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGR LSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED EVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPD ITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA VTLRVPLKVDYHYGSTWYDAK ; ;MAKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKR AAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIW ELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG VILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGR LSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED EVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPD ITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQA VTLRVPLKVDYHYGSTWYDAK ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DA)(DA)(DG)(DG)(DA)(DC)(DA)(DG)(DT)(DDG)' CAAGGACAGTG B ? 3 polydeoxyribonucleotide no yes '(DA)(TTD)(DC)(DA)(DC)(DT)(DG)(DT)(DC)(DC)(DT)(DT)(DG)(DA)(DC)' ATCACTGTCCTTGAC C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; DTP 5 'MANGANESE (II) ION' MN 6 'SULFATE ION' SO4 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LYS n 1 4 MET n 1 5 ALA n 1 6 PHE n 1 7 THR n 1 8 LEU n 1 9 ALA n 1 10 ASP n 1 11 ARG n 1 12 VAL n 1 13 THR n 1 14 GLU n 1 15 GLU n 1 16 MET n 1 17 LEU n 1 18 ALA n 1 19 ASP n 1 20 LYS n 1 21 ALA n 1 22 ALA n 1 23 LEU n 1 24 VAL n 1 25 VAL n 1 26 GLU n 1 27 VAL n 1 28 VAL n 1 29 GLU n 1 30 GLU n 1 31 ASN n 1 32 TYR n 1 33 HIS n 1 34 ASP n 1 35 ALA n 1 36 PRO n 1 37 ILE n 1 38 VAL n 1 39 GLY n 1 40 ILE n 1 41 ALA n 1 42 VAL n 1 43 VAL n 1 44 ASN n 1 45 GLU n 1 46 HIS n 1 47 GLY n 1 48 ARG n 1 49 PHE n 1 50 PHE n 1 51 LEU n 1 52 ARG n 1 53 PRO n 1 54 GLU n 1 55 THR n 1 56 ALA n 1 57 LEU n 1 58 ALA n 1 59 ASP n 1 60 PRO n 1 61 GLN n 1 62 PHE n 1 63 VAL n 1 64 ALA n 1 65 TRP n 1 66 LEU n 1 67 GLY n 1 68 ASP n 1 69 GLU n 1 70 THR n 1 71 LYS n 1 72 LYS n 1 73 LYS n 1 74 SER n 1 75 MET n 1 76 PHE n 1 77 ASP n 1 78 SER n 1 79 LYS n 1 80 ARG n 1 81 ALA n 1 82 ALA n 1 83 VAL n 1 84 ALA n 1 85 LEU n 1 86 LYS n 1 87 TRP n 1 88 LYS n 1 89 GLY n 1 90 ILE n 1 91 GLU n 1 92 LEU n 1 93 CYS n 1 94 GLY n 1 95 VAL n 1 96 SER n 1 97 PHE n 1 98 ASP n 1 99 LEU n 1 100 LEU n 1 101 LEU n 1 102 ALA n 1 103 ALA n 1 104 TYR n 1 105 LEU n 1 106 LEU n 1 107 ASP n 1 108 PRO n 1 109 ALA n 1 110 GLN n 1 111 GLY n 1 112 VAL n 1 113 ASP n 1 114 ASP n 1 115 VAL n 1 116 ALA n 1 117 ALA n 1 118 ALA n 1 119 ALA n 1 120 LYS n 1 121 MET n 1 122 LYS n 1 123 GLN n 1 124 TYR n 1 125 GLU n 1 126 ALA n 1 127 VAL n 1 128 ARG n 1 129 PRO n 1 130 ASP n 1 131 GLU n 1 132 ALA n 1 133 VAL n 1 134 TYR n 1 135 GLY n 1 136 LYS n 1 137 GLY n 1 138 ALA n 1 139 LYS n 1 140 ARG n 1 141 ALA n 1 142 VAL n 1 143 PRO n 1 144 ASP n 1 145 GLU n 1 146 PRO n 1 147 VAL n 1 148 LEU n 1 149 ALA n 1 150 GLU n 1 151 HIS n 1 152 LEU n 1 153 VAL n 1 154 ARG n 1 155 LYS n 1 156 ALA n 1 157 ALA n 1 158 ALA n 1 159 ILE n 1 160 TRP n 1 161 GLU n 1 162 LEU n 1 163 GLU n 1 164 ARG n 1 165 PRO n 1 166 PHE n 1 167 LEU n 1 168 ASP n 1 169 GLU n 1 170 LEU n 1 171 ARG n 1 172 ARG n 1 173 ASN n 1 174 GLU n 1 175 GLN n 1 176 ASP n 1 177 ARG n 1 178 LEU n 1 179 LEU n 1 180 VAL n 1 181 GLU n 1 182 LEU n 1 183 GLU n 1 184 GLN n 1 185 PRO n 1 186 LEU n 1 187 SER n 1 188 SER n 1 189 ILE n 1 190 LEU n 1 191 ALA n 1 192 GLU n 1 193 MET n 1 194 GLU n 1 195 PHE n 1 196 ALA n 1 197 GLY n 1 198 VAL n 1 199 LYS n 1 200 VAL n 1 201 ASP n 1 202 THR n 1 203 LYS n 1 204 ARG n 1 205 LEU n 1 206 GLU n 1 207 GLN n 1 208 MET n 1 209 GLY n 1 210 LYS n 1 211 GLU n 1 212 LEU n 1 213 ALA n 1 214 GLU n 1 215 GLN n 1 216 LEU n 1 217 GLY n 1 218 THR n 1 219 VAL n 1 220 GLU n 1 221 GLN n 1 222 ARG n 1 223 ILE n 1 224 TYR n 1 225 GLU n 1 226 LEU n 1 227 ALA n 1 228 GLY n 1 229 GLN n 1 230 GLU n 1 231 PHE n 1 232 ASN n 1 233 ILE n 1 234 ASN n 1 235 SER n 1 236 PRO n 1 237 LYS n 1 238 GLN n 1 239 LEU n 1 240 GLY n 1 241 VAL n 1 242 ILE n 1 243 LEU n 1 244 PHE n 1 245 GLU n 1 246 LYS n 1 247 LEU n 1 248 GLN n 1 249 LEU n 1 250 PRO n 1 251 VAL n 1 252 LEU n 1 253 LYS n 1 254 LYS n 1 255 THR n 1 256 LYS n 1 257 THR n 1 258 GLY n 1 259 TYR n 1 260 SER n 1 261 THR n 1 262 SER n 1 263 ALA n 1 264 ASP n 1 265 VAL n 1 266 LEU n 1 267 GLU n 1 268 LYS n 1 269 LEU n 1 270 ALA n 1 271 PRO n 1 272 TYR n 1 273 HIS n 1 274 GLU n 1 275 ILE n 1 276 VAL n 1 277 GLU n 1 278 ASN n 1 279 ILE n 1 280 LEU n 1 281 HIS n 1 282 TYR n 1 283 ARG n 1 284 GLN n 1 285 LEU n 1 286 GLY n 1 287 LYS n 1 288 LEU n 1 289 GLN n 1 290 SER n 1 291 THR n 1 292 TYR n 1 293 ILE n 1 294 GLU n 1 295 GLY n 1 296 LEU n 1 297 LEU n 1 298 LYS n 1 299 VAL n 1 300 VAL n 1 301 ARG n 1 302 PRO n 1 303 ALA n 1 304 THR n 1 305 LYS n 1 306 LYS n 1 307 VAL n 1 308 HIS n 1 309 THR n 1 310 ILE n 1 311 PHE n 1 312 ASN n 1 313 GLN n 1 314 ALA n 1 315 LEU n 1 316 THR n 1 317 GLN n 1 318 THR n 1 319 GLY n 1 320 ARG n 1 321 LEU n 1 322 SER n 1 323 SER n 1 324 THR n 1 325 GLU n 1 326 PRO n 1 327 ASN n 1 328 LEU n 1 329 GLN n 1 330 ASN n 1 331 ILE n 1 332 PRO n 1 333 ILE n 1 334 ARG n 1 335 LEU n 1 336 GLU n 1 337 GLU n 1 338 GLY n 1 339 ARG n 1 340 LYS n 1 341 ILE n 1 342 ARG n 1 343 GLN n 1 344 ALA n 1 345 PHE n 1 346 VAL n 1 347 PRO n 1 348 SER n 1 349 GLU n 1 350 SER n 1 351 ASP n 1 352 TRP n 1 353 LEU n 1 354 ILE n 1 355 PHE n 1 356 ALA n 1 357 ALA n 1 358 ASP n 1 359 TYR n 1 360 SER n 1 361 GLN n 1 362 ILE n 1 363 GLU n 1 364 LEU n 1 365 ARG n 1 366 VAL n 1 367 LEU n 1 368 ALA n 1 369 HIS n 1 370 ILE n 1 371 ALA n 1 372 GLU n 1 373 ASP n 1 374 ASP n 1 375 ASN n 1 376 LEU n 1 377 MET n 1 378 GLU n 1 379 ALA n 1 380 PHE n 1 381 ARG n 1 382 ARG n 1 383 ASP n 1 384 LEU n 1 385 ASP n 1 386 ILE n 1 387 HIS n 1 388 THR n 1 389 LYS n 1 390 THR n 1 391 ALA n 1 392 MET n 1 393 ASP n 1 394 ILE n 1 395 PHE n 1 396 GLN n 1 397 VAL n 1 398 SER n 1 399 GLU n 1 400 ASP n 1 401 GLU n 1 402 VAL n 1 403 THR n 1 404 PRO n 1 405 ASN n 1 406 MET n 1 407 ARG n 1 408 ARG n 1 409 GLN n 1 410 ALA n 1 411 LYS n 1 412 ALA n 1 413 VAL n 1 414 ASN n 1 415 PHE n 1 416 GLY n 1 417 ILE n 1 418 VAL n 1 419 TYR n 1 420 GLY n 1 421 ILE n 1 422 SER n 1 423 ASP n 1 424 TYR n 1 425 GLY n 1 426 LEU n 1 427 ALA n 1 428 GLN n 1 429 ASN n 1 430 LEU n 1 431 ASN n 1 432 ILE n 1 433 SER n 1 434 ARG n 1 435 LYS n 1 436 GLU n 1 437 ALA n 1 438 ALA n 1 439 GLU n 1 440 PHE n 1 441 ILE n 1 442 GLU n 1 443 ARG n 1 444 TYR n 1 445 PHE n 1 446 GLU n 1 447 SER n 1 448 PHE n 1 449 PRO n 1 450 GLY n 1 451 VAL n 1 452 LYS n 1 453 ARG n 1 454 TYR n 1 455 MET n 1 456 GLU n 1 457 ASN n 1 458 ILE n 1 459 VAL n 1 460 GLN n 1 461 GLU n 1 462 ALA n 1 463 LYS n 1 464 GLN n 1 465 LYS n 1 466 GLY n 1 467 TYR n 1 468 VAL n 1 469 THR n 1 470 THR n 1 471 LEU n 1 472 LEU n 1 473 HIS n 1 474 ARG n 1 475 ARG n 1 476 ARG n 1 477 TYR n 1 478 LEU n 1 479 PRO n 1 480 ASP n 1 481 ILE n 1 482 THR n 1 483 SER n 1 484 ARG n 1 485 ASN n 1 486 PHE n 1 487 ASN n 1 488 VAL n 1 489 ARG n 1 490 SER n 1 491 PHE n 1 492 ALA n 1 493 GLU n 1 494 ARG n 1 495 MET n 1 496 ALA n 1 497 MET n 1 498 ASN n 1 499 THR n 1 500 PRO n 1 501 ILE n 1 502 GLN n 1 503 GLY n 1 504 SER n 1 505 ALA n 1 506 ALA n 1 507 ASP n 1 508 ILE n 1 509 ILE n 1 510 LYS n 1 511 LYS n 1 512 ALA n 1 513 MET n 1 514 ILE n 1 515 ASP n 1 516 LEU n 1 517 ASN n 1 518 ALA n 1 519 ARG n 1 520 LEU n 1 521 LYS n 1 522 GLU n 1 523 GLU n 1 524 ARG n 1 525 LEU n 1 526 GLN n 1 527 ALA n 1 528 HIS n 1 529 LEU n 1 530 LEU n 1 531 LEU n 1 532 GLN n 1 533 VAL n 1 534 HIS n 1 535 ASP n 1 536 GLU n 1 537 LEU n 1 538 ILE n 1 539 LEU n 1 540 GLU n 1 541 ALA n 1 542 PRO n 1 543 LYS n 1 544 GLU n 1 545 GLU n 1 546 MET n 1 547 GLU n 1 548 ARG n 1 549 LEU n 1 550 CYS n 1 551 ARG n 1 552 LEU n 1 553 VAL n 1 554 PRO n 1 555 GLU n 1 556 VAL n 1 557 MET n 1 558 GLU n 1 559 GLN n 1 560 ALA n 1 561 VAL n 1 562 THR n 1 563 LEU n 1 564 ARG n 1 565 VAL n 1 566 PRO n 1 567 LEU n 1 568 LYS n 1 569 VAL n 1 570 ASP n 1 571 TYR n 1 572 HIS n 1 573 TYR n 1 574 GLY n 1 575 SER n 1 576 THR n 1 577 TRP n 1 578 TYR n 1 579 ASP n 1 580 ALA n 1 581 LYS n 2 1 DC n 2 2 DA n 2 3 DA n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DC n 2 8 DA n 2 9 DG n 2 10 DT n 2 11 DDG n 3 1 DA n 3 2 TTD n 3 3 DC n 3 4 DA n 3 5 DC n 3 6 DT n 3 7 DG n 3 8 DT n 3 9 DC n 3 10 DC n 3 11 DT n 3 12 DT n 3 13 DG n 3 14 DA n 3 15 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 581 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DPO1, polA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacillus stearothermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1422 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 11 'synthetic construct' ? 32630 ? 3 1 sample 1 15 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DDG 'DNA linking' n "2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DTP non-polymer . ;2'-DEOXYADENOSINE 5'-TRIPHOSPHATE ; ? 'C10 H16 N5 O12 P3' 491.182 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TTD 'DNA linking' n 'CIS-SYN CYCLOBUTANE THYMINE DIMER' ;[(3S,4S,9S,10R,12R,15AR,18BS,18CS)-3,7-DIHYDROXY-15A,15B-DIMETHYL-7-OXIDO-13,15,16,18-TETRAOXOHEXADECAHYDRO-1H-1,4-EPOX Y-9,12-METHANO-6,8,11-TRIOXA-12A,14,17,18A-TETRAAZA-7-PHOSPHACYCLOHEXADECA[1,2,3,4-DEF]BIPHENYLEN-10-YL]METHYL DIHYDROGEN PHOSPHATE ; 'C20 H28 N4 O15 P2' 626.402 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 296 ? ? ? A . n A 1 2 ALA 2 297 297 ALA ALA A . n A 1 3 LYS 3 298 298 LYS LYS A . n A 1 4 MET 4 299 299 MET MET A . n A 1 5 ALA 5 300 300 ALA ALA A . n A 1 6 PHE 6 301 301 PHE PHE A . n A 1 7 THR 7 302 302 THR THR A . n A 1 8 LEU 8 303 303 LEU LEU A . n A 1 9 ALA 9 304 304 ALA ALA A . n A 1 10 ASP 10 305 305 ASP ASP A . n A 1 11 ARG 11 306 306 ARG ARG A . n A 1 12 VAL 12 307 307 VAL VAL A . n A 1 13 THR 13 308 308 THR THR A . n A 1 14 GLU 14 309 309 GLU GLU A . n A 1 15 GLU 15 310 310 GLU GLU A . n A 1 16 MET 16 311 311 MET MET A . n A 1 17 LEU 17 312 312 LEU LEU A . n A 1 18 ALA 18 313 313 ALA ALA A . n A 1 19 ASP 19 314 314 ASP ASP A . n A 1 20 LYS 20 315 315 LYS LYS A . n A 1 21 ALA 21 316 316 ALA ALA A . n A 1 22 ALA 22 317 317 ALA ALA A . n A 1 23 LEU 23 318 318 LEU LEU A . n A 1 24 VAL 24 319 319 VAL VAL A . n A 1 25 VAL 25 320 320 VAL VAL A . n A 1 26 GLU 26 321 321 GLU GLU A . n A 1 27 VAL 27 322 322 VAL VAL A . n A 1 28 VAL 28 323 323 VAL VAL A . n A 1 29 GLU 29 324 324 GLU GLU A . n A 1 30 GLU 30 325 325 GLU GLU A . n A 1 31 ASN 31 326 326 ASN ASN A . n A 1 32 TYR 32 327 327 TYR TYR A . n A 1 33 HIS 33 328 328 HIS HIS A . n A 1 34 ASP 34 329 329 ASP ASP A . n A 1 35 ALA 35 330 330 ALA ALA A . n A 1 36 PRO 36 331 331 PRO PRO A . n A 1 37 ILE 37 332 332 ILE ILE A . n A 1 38 VAL 38 333 333 VAL VAL A . n A 1 39 GLY 39 334 334 GLY GLY A . n A 1 40 ILE 40 335 335 ILE ILE A . n A 1 41 ALA 41 336 336 ALA ALA A . n A 1 42 VAL 42 337 337 VAL VAL A . n A 1 43 VAL 43 338 338 VAL VAL A . n A 1 44 ASN 44 339 339 ASN ASN A . n A 1 45 GLU 45 340 340 GLU GLU A . n A 1 46 HIS 46 341 341 HIS HIS A . n A 1 47 GLY 47 342 342 GLY GLY A . n A 1 48 ARG 48 343 343 ARG ARG A . n A 1 49 PHE 49 344 344 PHE PHE A . n A 1 50 PHE 50 345 345 PHE PHE A . n A 1 51 LEU 51 346 346 LEU LEU A . n A 1 52 ARG 52 347 347 ARG ARG A . n A 1 53 PRO 53 348 348 PRO PRO A . n A 1 54 GLU 54 349 349 GLU GLU A . n A 1 55 THR 55 350 350 THR THR A . n A 1 56 ALA 56 351 351 ALA ALA A . n A 1 57 LEU 57 352 352 LEU LEU A . n A 1 58 ALA 58 353 353 ALA ALA A . n A 1 59 ASP 59 354 354 ASP ASP A . n A 1 60 PRO 60 355 355 PRO PRO A . n A 1 61 GLN 61 356 356 GLN GLN A . n A 1 62 PHE 62 357 357 PHE PHE A . n A 1 63 VAL 63 358 358 VAL VAL A . n A 1 64 ALA 64 359 359 ALA ALA A . n A 1 65 TRP 65 360 360 TRP TRP A . n A 1 66 LEU 66 361 361 LEU LEU A . n A 1 67 GLY 67 362 362 GLY GLY A . n A 1 68 ASP 68 363 363 ASP ASP A . n A 1 69 GLU 69 364 364 GLU GLU A . n A 1 70 THR 70 365 365 THR THR A . n A 1 71 LYS 71 366 366 LYS LYS A . n A 1 72 LYS 72 367 367 LYS LYS A . n A 1 73 LYS 73 368 368 LYS LYS A . n A 1 74 SER 74 369 369 SER SER A . n A 1 75 MET 75 370 370 MET MET A . n A 1 76 PHE 76 371 371 PHE PHE A . n A 1 77 ASP 77 372 372 ASP ASP A . n A 1 78 SER 78 373 373 SER SER A . n A 1 79 LYS 79 374 374 LYS LYS A . n A 1 80 ARG 80 375 375 ARG ARG A . n A 1 81 ALA 81 376 376 ALA ALA A . n A 1 82 ALA 82 377 377 ALA ALA A . n A 1 83 VAL 83 378 378 VAL VAL A . n A 1 84 ALA 84 379 379 ALA ALA A . n A 1 85 LEU 85 380 380 LEU LEU A . n A 1 86 LYS 86 381 381 LYS LYS A . n A 1 87 TRP 87 382 382 TRP TRP A . n A 1 88 LYS 88 383 383 LYS LYS A . n A 1 89 GLY 89 384 384 GLY GLY A . n A 1 90 ILE 90 385 385 ILE ILE A . n A 1 91 GLU 91 386 386 GLU GLU A . n A 1 92 LEU 92 387 387 LEU LEU A . n A 1 93 CYS 93 388 388 CYS CYS A . n A 1 94 GLY 94 389 389 GLY GLY A . n A 1 95 VAL 95 390 390 VAL VAL A . n A 1 96 SER 96 391 391 SER SER A . n A 1 97 PHE 97 392 392 PHE PHE A . n A 1 98 ASP 98 393 393 ASP ASP A . n A 1 99 LEU 99 394 394 LEU LEU A . n A 1 100 LEU 100 395 395 LEU LEU A . n A 1 101 LEU 101 396 396 LEU LEU A . n A 1 102 ALA 102 397 397 ALA ALA A . n A 1 103 ALA 103 398 398 ALA ALA A . n A 1 104 TYR 104 399 399 TYR TYR A . n A 1 105 LEU 105 400 400 LEU LEU A . n A 1 106 LEU 106 401 401 LEU LEU A . n A 1 107 ASP 107 402 402 ASP ASP A . n A 1 108 PRO 108 403 403 PRO PRO A . n A 1 109 ALA 109 404 404 ALA ALA A . n A 1 110 GLN 110 405 405 GLN GLN A . n A 1 111 GLY 111 406 406 GLY GLY A . n A 1 112 VAL 112 407 407 VAL VAL A . n A 1 113 ASP 113 408 408 ASP ASP A . n A 1 114 ASP 114 409 409 ASP ASP A . n A 1 115 VAL 115 410 410 VAL VAL A . n A 1 116 ALA 116 411 411 ALA ALA A . n A 1 117 ALA 117 412 412 ALA ALA A . n A 1 118 ALA 118 413 413 ALA ALA A . n A 1 119 ALA 119 414 414 ALA ALA A . n A 1 120 LYS 120 415 415 LYS LYS A . n A 1 121 MET 121 416 416 MET MET A . n A 1 122 LYS 122 417 417 LYS LYS A . n A 1 123 GLN 123 418 418 GLN GLN A . n A 1 124 TYR 124 419 419 TYR TYR A . n A 1 125 GLU 125 420 420 GLU GLU A . n A 1 126 ALA 126 421 421 ALA ALA A . n A 1 127 VAL 127 422 422 VAL VAL A . n A 1 128 ARG 128 423 423 ARG ARG A . n A 1 129 PRO 129 424 424 PRO PRO A . n A 1 130 ASP 130 425 425 ASP ASP A . n A 1 131 GLU 131 426 426 GLU GLU A . n A 1 132 ALA 132 427 427 ALA ALA A . n A 1 133 VAL 133 428 428 VAL VAL A . n A 1 134 TYR 134 429 429 TYR TYR A . n A 1 135 GLY 135 430 430 GLY GLY A . n A 1 136 LYS 136 431 431 LYS LYS A . n A 1 137 GLY 137 432 432 GLY GLY A . n A 1 138 ALA 138 433 433 ALA ALA A . n A 1 139 LYS 139 434 434 LYS LYS A . n A 1 140 ARG 140 435 435 ARG ARG A . n A 1 141 ALA 141 436 436 ALA ALA A . n A 1 142 VAL 142 437 437 VAL VAL A . n A 1 143 PRO 143 438 438 PRO PRO A . n A 1 144 ASP 144 439 439 ASP ASP A . n A 1 145 GLU 145 440 440 GLU GLU A . n A 1 146 PRO 146 441 441 PRO PRO A . n A 1 147 VAL 147 442 442 VAL VAL A . n A 1 148 LEU 148 443 443 LEU LEU A . n A 1 149 ALA 149 444 444 ALA ALA A . n A 1 150 GLU 150 445 445 GLU GLU A . n A 1 151 HIS 151 446 446 HIS HIS A . n A 1 152 LEU 152 447 447 LEU LEU A . n A 1 153 VAL 153 448 448 VAL VAL A . n A 1 154 ARG 154 449 449 ARG ARG A . n A 1 155 LYS 155 450 450 LYS LYS A . n A 1 156 ALA 156 451 451 ALA ALA A . n A 1 157 ALA 157 452 452 ALA ALA A . n A 1 158 ALA 158 453 453 ALA ALA A . n A 1 159 ILE 159 454 454 ILE ILE A . n A 1 160 TRP 160 455 455 TRP TRP A . n A 1 161 GLU 161 456 456 GLU GLU A . n A 1 162 LEU 162 457 457 LEU LEU A . n A 1 163 GLU 163 458 458 GLU GLU A . n A 1 164 ARG 164 459 459 ARG ARG A . n A 1 165 PRO 165 460 460 PRO PRO A . n A 1 166 PHE 166 461 461 PHE PHE A . n A 1 167 LEU 167 462 462 LEU LEU A . n A 1 168 ASP 168 463 463 ASP ASP A . n A 1 169 GLU 169 464 464 GLU GLU A . n A 1 170 LEU 170 465 465 LEU LEU A . n A 1 171 ARG 171 466 466 ARG ARG A . n A 1 172 ARG 172 467 467 ARG ARG A . n A 1 173 ASN 173 468 468 ASN ASN A . n A 1 174 GLU 174 469 469 GLU GLU A . n A 1 175 GLN 175 470 470 GLN GLN A . n A 1 176 ASP 176 471 471 ASP ASP A . n A 1 177 ARG 177 472 472 ARG ARG A . n A 1 178 LEU 178 473 473 LEU LEU A . n A 1 179 LEU 179 474 474 LEU LEU A . n A 1 180 VAL 180 475 475 VAL VAL A . n A 1 181 GLU 181 476 476 GLU GLU A . n A 1 182 LEU 182 477 477 LEU LEU A . n A 1 183 GLU 183 478 478 GLU GLU A . n A 1 184 GLN 184 479 479 GLN GLN A . n A 1 185 PRO 185 480 480 PRO PRO A . n A 1 186 LEU 186 481 481 LEU LEU A . n A 1 187 SER 187 482 482 SER SER A . n A 1 188 SER 188 483 483 SER SER A . n A 1 189 ILE 189 484 484 ILE ILE A . n A 1 190 LEU 190 485 485 LEU LEU A . n A 1 191 ALA 191 486 486 ALA ALA A . n A 1 192 GLU 192 487 487 GLU GLU A . n A 1 193 MET 193 488 488 MET MET A . n A 1 194 GLU 194 489 489 GLU GLU A . n A 1 195 PHE 195 490 490 PHE PHE A . n A 1 196 ALA 196 491 491 ALA ALA A . n A 1 197 GLY 197 492 492 GLY GLY A . n A 1 198 VAL 198 493 493 VAL VAL A . n A 1 199 LYS 199 494 494 LYS LYS A . n A 1 200 VAL 200 495 495 VAL VAL A . n A 1 201 ASP 201 496 496 ASP ASP A . n A 1 202 THR 202 497 497 THR THR A . n A 1 203 LYS 203 498 498 LYS LYS A . n A 1 204 ARG 204 499 499 ARG ARG A . n A 1 205 LEU 205 500 500 LEU LEU A . n A 1 206 GLU 206 501 501 GLU GLU A . n A 1 207 GLN 207 502 502 GLN GLN A . n A 1 208 MET 208 503 503 MET MET A . n A 1 209 GLY 209 504 504 GLY GLY A . n A 1 210 LYS 210 505 505 LYS LYS A . n A 1 211 GLU 211 506 506 GLU GLU A . n A 1 212 LEU 212 507 507 LEU LEU A . n A 1 213 ALA 213 508 508 ALA ALA A . n A 1 214 GLU 214 509 509 GLU GLU A . n A 1 215 GLN 215 510 510 GLN GLN A . n A 1 216 LEU 216 511 511 LEU LEU A . n A 1 217 GLY 217 512 512 GLY GLY A . n A 1 218 THR 218 513 513 THR THR A . n A 1 219 VAL 219 514 514 VAL VAL A . n A 1 220 GLU 220 515 515 GLU GLU A . n A 1 221 GLN 221 516 516 GLN GLN A . n A 1 222 ARG 222 517 517 ARG ARG A . n A 1 223 ILE 223 518 518 ILE ILE A . n A 1 224 TYR 224 519 519 TYR TYR A . n A 1 225 GLU 225 520 520 GLU GLU A . n A 1 226 LEU 226 521 521 LEU LEU A . n A 1 227 ALA 227 522 522 ALA ALA A . n A 1 228 GLY 228 523 523 GLY GLY A . n A 1 229 GLN 229 524 524 GLN GLN A . n A 1 230 GLU 230 525 525 GLU GLU A . n A 1 231 PHE 231 526 526 PHE PHE A . n A 1 232 ASN 232 527 527 ASN ASN A . n A 1 233 ILE 233 528 528 ILE ILE A . n A 1 234 ASN 234 529 529 ASN ASN A . n A 1 235 SER 235 530 530 SER SER A . n A 1 236 PRO 236 531 531 PRO PRO A . n A 1 237 LYS 237 532 532 LYS LYS A . n A 1 238 GLN 238 533 533 GLN GLN A . n A 1 239 LEU 239 534 534 LEU LEU A . n A 1 240 GLY 240 535 535 GLY GLY A . n A 1 241 VAL 241 536 536 VAL VAL A . n A 1 242 ILE 242 537 537 ILE ILE A . n A 1 243 LEU 243 538 538 LEU LEU A . n A 1 244 PHE 244 539 539 PHE PHE A . n A 1 245 GLU 245 540 540 GLU GLU A . n A 1 246 LYS 246 541 541 LYS LYS A . n A 1 247 LEU 247 542 542 LEU LEU A . n A 1 248 GLN 248 543 543 GLN GLN A . n A 1 249 LEU 249 544 544 LEU LEU A . n A 1 250 PRO 250 545 545 PRO PRO A . n A 1 251 VAL 251 546 546 VAL VAL A . n A 1 252 LEU 252 547 547 LEU LEU A . n A 1 253 LYS 253 548 548 LYS LYS A . n A 1 254 LYS 254 549 549 LYS LYS A . n A 1 255 THR 255 550 550 THR THR A . n A 1 256 LYS 256 551 551 LYS LYS A . n A 1 257 THR 257 552 552 THR THR A . n A 1 258 GLY 258 553 553 GLY GLY A . n A 1 259 TYR 259 554 554 TYR TYR A . n A 1 260 SER 260 555 555 SER SER A . n A 1 261 THR 261 556 556 THR THR A . n A 1 262 SER 262 557 557 SER SER A . n A 1 263 ALA 263 558 558 ALA ALA A . n A 1 264 ASP 264 559 559 ASP ASP A . n A 1 265 VAL 265 560 560 VAL VAL A . n A 1 266 LEU 266 561 561 LEU LEU A . n A 1 267 GLU 267 562 562 GLU GLU A . n A 1 268 LYS 268 563 563 LYS LYS A . n A 1 269 LEU 269 564 564 LEU LEU A . n A 1 270 ALA 270 565 565 ALA ALA A . n A 1 271 PRO 271 566 566 PRO PRO A . n A 1 272 TYR 272 567 567 TYR TYR A . n A 1 273 HIS 273 568 568 HIS HIS A . n A 1 274 GLU 274 569 569 GLU GLU A . n A 1 275 ILE 275 570 570 ILE ILE A . n A 1 276 VAL 276 571 571 VAL VAL A . n A 1 277 GLU 277 572 572 GLU GLU A . n A 1 278 ASN 278 573 573 ASN ASN A . n A 1 279 ILE 279 574 574 ILE ILE A . n A 1 280 LEU 280 575 575 LEU LEU A . n A 1 281 HIS 281 576 576 HIS HIS A . n A 1 282 TYR 282 577 577 TYR TYR A . n A 1 283 ARG 283 578 578 ARG ARG A . n A 1 284 GLN 284 579 579 GLN GLN A . n A 1 285 LEU 285 580 580 LEU LEU A . n A 1 286 GLY 286 581 581 GLY GLY A . n A 1 287 LYS 287 582 582 LYS LYS A . n A 1 288 LEU 288 583 583 LEU LEU A . n A 1 289 GLN 289 584 584 GLN GLN A . n A 1 290 SER 290 585 585 SER SER A . n A 1 291 THR 291 586 586 THR THR A . n A 1 292 TYR 292 587 587 TYR TYR A . n A 1 293 ILE 293 588 588 ILE ILE A . n A 1 294 GLU 294 589 589 GLU GLU A . n A 1 295 GLY 295 590 590 GLY GLY A . n A 1 296 LEU 296 591 591 LEU LEU A . n A 1 297 LEU 297 592 592 LEU LEU A . n A 1 298 LYS 298 593 593 LYS LYS A . n A 1 299 VAL 299 594 594 VAL VAL A . n A 1 300 VAL 300 595 595 VAL VAL A . n A 1 301 ARG 301 596 596 ARG ARG A . n A 1 302 PRO 302 597 597 PRO PRO A . n A 1 303 ALA 303 598 598 ALA ALA A . n A 1 304 THR 304 599 599 THR THR A . n A 1 305 LYS 305 600 600 LYS LYS A . n A 1 306 LYS 306 601 601 LYS LYS A . n A 1 307 VAL 307 602 602 VAL VAL A . n A 1 308 HIS 308 603 603 HIS HIS A . n A 1 309 THR 309 604 604 THR THR A . n A 1 310 ILE 310 605 605 ILE ILE A . n A 1 311 PHE 311 606 606 PHE PHE A . n A 1 312 ASN 312 607 607 ASN ASN A . n A 1 313 GLN 313 608 608 GLN GLN A . n A 1 314 ALA 314 609 609 ALA ALA A . n A 1 315 LEU 315 610 610 LEU LEU A . n A 1 316 THR 316 611 611 THR THR A . n A 1 317 GLN 317 612 612 GLN GLN A . n A 1 318 THR 318 613 613 THR THR A . n A 1 319 GLY 319 614 614 GLY GLY A . n A 1 320 ARG 320 615 615 ARG ARG A . n A 1 321 LEU 321 616 616 LEU LEU A . n A 1 322 SER 322 617 617 SER SER A . n A 1 323 SER 323 618 618 SER SER A . n A 1 324 THR 324 619 619 THR THR A . n A 1 325 GLU 325 620 620 GLU GLU A . n A 1 326 PRO 326 621 621 PRO PRO A . n A 1 327 ASN 327 622 622 ASN ASN A . n A 1 328 LEU 328 623 623 LEU LEU A . n A 1 329 GLN 329 624 624 GLN GLN A . n A 1 330 ASN 330 625 625 ASN ASN A . n A 1 331 ILE 331 626 626 ILE ILE A . n A 1 332 PRO 332 627 627 PRO PRO A . n A 1 333 ILE 333 628 628 ILE ILE A . n A 1 334 ARG 334 629 629 ARG ARG A . n A 1 335 LEU 335 630 630 LEU LEU A . n A 1 336 GLU 336 631 631 GLU GLU A . n A 1 337 GLU 337 632 632 GLU GLU A . n A 1 338 GLY 338 633 633 GLY GLY A . n A 1 339 ARG 339 634 634 ARG ARG A . n A 1 340 LYS 340 635 635 LYS LYS A . n A 1 341 ILE 341 636 636 ILE ILE A . n A 1 342 ARG 342 637 637 ARG ARG A . n A 1 343 GLN 343 638 638 GLN GLN A . n A 1 344 ALA 344 639 639 ALA ALA A . n A 1 345 PHE 345 640 640 PHE PHE A . n A 1 346 VAL 346 641 641 VAL VAL A . n A 1 347 PRO 347 642 642 PRO PRO A . n A 1 348 SER 348 643 643 SER SER A . n A 1 349 GLU 349 644 644 GLU GLU A . n A 1 350 SER 350 645 645 SER SER A . n A 1 351 ASP 351 646 646 ASP ASP A . n A 1 352 TRP 352 647 647 TRP TRP A . n A 1 353 LEU 353 648 648 LEU LEU A . n A 1 354 ILE 354 649 649 ILE ILE A . n A 1 355 PHE 355 650 650 PHE PHE A . n A 1 356 ALA 356 651 651 ALA ALA A . n A 1 357 ALA 357 652 652 ALA ALA A . n A 1 358 ASP 358 653 653 ASP ASP A . n A 1 359 TYR 359 654 654 TYR TYR A . n A 1 360 SER 360 655 655 SER SER A . n A 1 361 GLN 361 656 656 GLN GLN A . n A 1 362 ILE 362 657 657 ILE ILE A . n A 1 363 GLU 363 658 658 GLU GLU A . n A 1 364 LEU 364 659 659 LEU LEU A . n A 1 365 ARG 365 660 660 ARG ARG A . n A 1 366 VAL 366 661 661 VAL VAL A . n A 1 367 LEU 367 662 662 LEU LEU A . n A 1 368 ALA 368 663 663 ALA ALA A . n A 1 369 HIS 369 664 664 HIS HIS A . n A 1 370 ILE 370 665 665 ILE ILE A . n A 1 371 ALA 371 666 666 ALA ALA A . n A 1 372 GLU 372 667 667 GLU GLU A . n A 1 373 ASP 373 668 668 ASP ASP A . n A 1 374 ASP 374 669 669 ASP ASP A . n A 1 375 ASN 375 670 670 ASN ASN A . n A 1 376 LEU 376 671 671 LEU LEU A . n A 1 377 MET 377 672 672 MET MET A . n A 1 378 GLU 378 673 673 GLU GLU A . n A 1 379 ALA 379 674 674 ALA ALA A . n A 1 380 PHE 380 675 675 PHE PHE A . n A 1 381 ARG 381 676 676 ARG ARG A . n A 1 382 ARG 382 677 677 ARG ARG A . n A 1 383 ASP 383 678 678 ASP ASP A . n A 1 384 LEU 384 679 679 LEU LEU A . n A 1 385 ASP 385 680 680 ASP ASP A . n A 1 386 ILE 386 681 681 ILE ILE A . n A 1 387 HIS 387 682 682 HIS HIS A . n A 1 388 THR 388 683 683 THR THR A . n A 1 389 LYS 389 684 684 LYS LYS A . n A 1 390 THR 390 685 685 THR THR A . n A 1 391 ALA 391 686 686 ALA ALA A . n A 1 392 MET 392 687 687 MET MET A . n A 1 393 ASP 393 688 688 ASP ASP A . n A 1 394 ILE 394 689 689 ILE ILE A . n A 1 395 PHE 395 690 690 PHE PHE A . n A 1 396 GLN 396 691 691 GLN GLN A . n A 1 397 VAL 397 692 692 VAL VAL A . n A 1 398 SER 398 693 693 SER SER A . n A 1 399 GLU 399 694 694 GLU GLU A . n A 1 400 ASP 400 695 695 ASP ASP A . n A 1 401 GLU 401 696 696 GLU GLU A . n A 1 402 VAL 402 697 697 VAL VAL A . n A 1 403 THR 403 698 698 THR THR A . n A 1 404 PRO 404 699 699 PRO PRO A . n A 1 405 ASN 405 700 700 ASN ASN A . n A 1 406 MET 406 701 701 MET MET A . n A 1 407 ARG 407 702 702 ARG ARG A . n A 1 408 ARG 408 703 703 ARG ARG A . n A 1 409 GLN 409 704 704 GLN GLN A . n A 1 410 ALA 410 705 705 ALA ALA A . n A 1 411 LYS 411 706 706 LYS LYS A . n A 1 412 ALA 412 707 707 ALA ALA A . n A 1 413 VAL 413 708 708 VAL VAL A . n A 1 414 ASN 414 709 709 ASN ASN A . n A 1 415 PHE 415 710 710 PHE PHE A . n A 1 416 GLY 416 711 711 GLY GLY A . n A 1 417 ILE 417 712 712 ILE ILE A . n A 1 418 VAL 418 713 713 VAL VAL A . n A 1 419 TYR 419 714 714 TYR TYR A . n A 1 420 GLY 420 715 715 GLY GLY A . n A 1 421 ILE 421 716 716 ILE ILE A . n A 1 422 SER 422 717 717 SER SER A . n A 1 423 ASP 423 718 718 ASP ASP A . n A 1 424 TYR 424 719 719 TYR TYR A . n A 1 425 GLY 425 720 720 GLY GLY A . n A 1 426 LEU 426 721 721 LEU LEU A . n A 1 427 ALA 427 722 722 ALA ALA A . n A 1 428 GLN 428 723 723 GLN GLN A . n A 1 429 ASN 429 724 724 ASN ASN A . n A 1 430 LEU 430 725 725 LEU LEU A . n A 1 431 ASN 431 726 726 ASN ASN A . n A 1 432 ILE 432 727 727 ILE ILE A . n A 1 433 SER 433 728 728 SER SER A . n A 1 434 ARG 434 729 729 ARG ARG A . n A 1 435 LYS 435 730 730 LYS LYS A . n A 1 436 GLU 436 731 731 GLU GLU A . n A 1 437 ALA 437 732 732 ALA ALA A . n A 1 438 ALA 438 733 733 ALA ALA A . n A 1 439 GLU 439 734 734 GLU GLU A . n A 1 440 PHE 440 735 735 PHE PHE A . n A 1 441 ILE 441 736 736 ILE ILE A . n A 1 442 GLU 442 737 737 GLU GLU A . n A 1 443 ARG 443 738 738 ARG ARG A . n A 1 444 TYR 444 739 739 TYR TYR A . n A 1 445 PHE 445 740 740 PHE PHE A . n A 1 446 GLU 446 741 741 GLU GLU A . n A 1 447 SER 447 742 742 SER SER A . n A 1 448 PHE 448 743 743 PHE PHE A . n A 1 449 PRO 449 744 744 PRO PRO A . n A 1 450 GLY 450 745 745 GLY GLY A . n A 1 451 VAL 451 746 746 VAL VAL A . n A 1 452 LYS 452 747 747 LYS LYS A . n A 1 453 ARG 453 748 748 ARG ARG A . n A 1 454 TYR 454 749 749 TYR TYR A . n A 1 455 MET 455 750 750 MET MET A . n A 1 456 GLU 456 751 751 GLU GLU A . n A 1 457 ASN 457 752 752 ASN ASN A . n A 1 458 ILE 458 753 753 ILE ILE A . n A 1 459 VAL 459 754 754 VAL VAL A . n A 1 460 GLN 460 755 755 GLN GLN A . n A 1 461 GLU 461 756 756 GLU GLU A . n A 1 462 ALA 462 757 757 ALA ALA A . n A 1 463 LYS 463 758 758 LYS LYS A . n A 1 464 GLN 464 759 759 GLN GLN A . n A 1 465 LYS 465 760 760 LYS LYS A . n A 1 466 GLY 466 761 761 GLY GLY A . n A 1 467 TYR 467 762 762 TYR TYR A . n A 1 468 VAL 468 763 763 VAL VAL A . n A 1 469 THR 469 764 764 THR THR A . n A 1 470 THR 470 765 765 THR THR A . n A 1 471 LEU 471 766 766 LEU LEU A . n A 1 472 LEU 472 767 767 LEU LEU A . n A 1 473 HIS 473 768 768 HIS HIS A . n A 1 474 ARG 474 769 769 ARG ARG A . n A 1 475 ARG 475 770 770 ARG ARG A . n A 1 476 ARG 476 771 771 ARG ARG A . n A 1 477 TYR 477 772 772 TYR TYR A . n A 1 478 LEU 478 773 773 LEU LEU A . n A 1 479 PRO 479 774 774 PRO PRO A . n A 1 480 ASP 480 775 775 ASP ASP A . n A 1 481 ILE 481 776 776 ILE ILE A . n A 1 482 THR 482 777 777 THR THR A . n A 1 483 SER 483 778 778 SER SER A . n A 1 484 ARG 484 779 779 ARG ARG A . n A 1 485 ASN 485 780 780 ASN ASN A . n A 1 486 PHE 486 781 781 PHE PHE A . n A 1 487 ASN 487 782 782 ASN ASN A . n A 1 488 VAL 488 783 783 VAL VAL A . n A 1 489 ARG 489 784 784 ARG ARG A . n A 1 490 SER 490 785 785 SER SER A . n A 1 491 PHE 491 786 786 PHE PHE A . n A 1 492 ALA 492 787 787 ALA ALA A . n A 1 493 GLU 493 788 788 GLU GLU A . n A 1 494 ARG 494 789 789 ARG ARG A . n A 1 495 MET 495 790 790 MET MET A . n A 1 496 ALA 496 791 791 ALA ALA A . n A 1 497 MET 497 792 792 MET MET A . n A 1 498 ASN 498 793 793 ASN ASN A . n A 1 499 THR 499 794 794 THR THR A . n A 1 500 PRO 500 795 795 PRO PRO A . n A 1 501 ILE 501 796 796 ILE ILE A . n A 1 502 GLN 502 797 797 GLN GLN A . n A 1 503 GLY 503 798 798 GLY GLY A . n A 1 504 SER 504 799 799 SER SER A . n A 1 505 ALA 505 800 800 ALA ALA A . n A 1 506 ALA 506 801 801 ALA ALA A . n A 1 507 ASP 507 802 802 ASP ASP A . n A 1 508 ILE 508 803 803 ILE ILE A . n A 1 509 ILE 509 804 804 ILE ILE A . n A 1 510 LYS 510 805 805 LYS LYS A . n A 1 511 LYS 511 806 806 LYS LYS A . n A 1 512 ALA 512 807 807 ALA ALA A . n A 1 513 MET 513 808 808 MET MET A . n A 1 514 ILE 514 809 809 ILE ILE A . n A 1 515 ASP 515 810 810 ASP ASP A . n A 1 516 LEU 516 811 811 LEU LEU A . n A 1 517 ASN 517 812 812 ASN ASN A . n A 1 518 ALA 518 813 813 ALA ALA A . n A 1 519 ARG 519 814 814 ARG ARG A . n A 1 520 LEU 520 815 815 LEU LEU A . n A 1 521 LYS 521 816 816 LYS LYS A . n A 1 522 GLU 522 817 817 GLU GLU A . n A 1 523 GLU 523 818 818 GLU GLU A . n A 1 524 ARG 524 819 819 ARG ARG A . n A 1 525 LEU 525 820 820 LEU LEU A . n A 1 526 GLN 526 821 821 GLN GLN A . n A 1 527 ALA 527 822 822 ALA ALA A . n A 1 528 HIS 528 823 823 HIS HIS A . n A 1 529 LEU 529 824 824 LEU LEU A . n A 1 530 LEU 530 825 825 LEU LEU A . n A 1 531 LEU 531 826 826 LEU LEU A . n A 1 532 GLN 532 827 827 GLN GLN A . n A 1 533 VAL 533 828 828 VAL VAL A . n A 1 534 HIS 534 829 829 HIS HIS A . n A 1 535 ASP 535 830 830 ASP ASP A . n A 1 536 GLU 536 831 831 GLU GLU A . n A 1 537 LEU 537 832 832 LEU LEU A . n A 1 538 ILE 538 833 833 ILE ILE A . n A 1 539 LEU 539 834 834 LEU LEU A . n A 1 540 GLU 540 835 835 GLU GLU A . n A 1 541 ALA 541 836 836 ALA ALA A . n A 1 542 PRO 542 837 837 PRO PRO A . n A 1 543 LYS 543 838 838 LYS LYS A . n A 1 544 GLU 544 839 839 GLU GLU A . n A 1 545 GLU 545 840 840 GLU GLU A . n A 1 546 MET 546 841 841 MET MET A . n A 1 547 GLU 547 842 842 GLU GLU A . n A 1 548 ARG 548 843 843 ARG ARG A . n A 1 549 LEU 549 844 844 LEU LEU A . n A 1 550 CYS 550 845 845 CYS CYS A . n A 1 551 ARG 551 846 846 ARG ARG A . n A 1 552 LEU 552 847 847 LEU LEU A . n A 1 553 VAL 553 848 848 VAL VAL A . n A 1 554 PRO 554 849 849 PRO PRO A . n A 1 555 GLU 555 850 850 GLU GLU A . n A 1 556 VAL 556 851 851 VAL VAL A . n A 1 557 MET 557 852 852 MET MET A . n A 1 558 GLU 558 853 853 GLU GLU A . n A 1 559 GLN 559 854 854 GLN GLN A . n A 1 560 ALA 560 855 855 ALA ALA A . n A 1 561 VAL 561 856 856 VAL VAL A . n A 1 562 THR 562 857 857 THR THR A . n A 1 563 LEU 563 858 858 LEU LEU A . n A 1 564 ARG 564 859 859 ARG ARG A . n A 1 565 VAL 565 860 860 VAL VAL A . n A 1 566 PRO 566 861 861 PRO PRO A . n A 1 567 LEU 567 862 862 LEU LEU A . n A 1 568 LYS 568 863 863 LYS LYS A . n A 1 569 VAL 569 864 864 VAL VAL A . n A 1 570 ASP 570 865 865 ASP ASP A . n A 1 571 TYR 571 866 866 TYR TYR A . n A 1 572 HIS 572 867 867 HIS HIS A . n A 1 573 TYR 573 868 868 TYR TYR A . n A 1 574 GLY 574 869 869 GLY GLY A . n A 1 575 SER 575 870 870 SER SER A . n A 1 576 THR 576 871 871 THR THR A . n A 1 577 TRP 577 872 872 TRP TRP A . n A 1 578 TYR 578 873 873 TYR TYR A . n A 1 579 ASP 579 874 874 ASP ASP A . n A 1 580 ALA 580 875 875 ALA ALA A . n A 1 581 LYS 581 876 876 LYS LYS A . n B 2 1 DC 1 19 19 DC DC B . n B 2 2 DA 2 20 20 DA DA B . n B 2 3 DA 3 21 21 DA DA B . n B 2 4 DG 4 22 22 DG DG B . n B 2 5 DG 5 23 23 DG DG B . n B 2 6 DA 6 24 24 DA DA B . n B 2 7 DC 7 25 25 DC DC B . n B 2 8 DA 8 26 26 DA DA B . n B 2 9 DG 9 27 27 DG DG B . n B 2 10 DT 10 28 28 DT DT B . n B 2 11 DDG 11 29 29 DDG DDG B . n C 3 1 DA 1 2 2 DA DA C . n C 3 2 TTD 2 3 3 TTD TTD C . n C 3 3 DC 3 4 4 DC DC C . n C 3 4 DA 4 5 5 DA DA C . n C 3 5 DC 5 6 6 DC DC C . n C 3 6 DT 6 7 7 DT DT C . n C 3 7 DG 7 8 8 DG DG C . n C 3 8 DT 8 9 9 DT DT C . n C 3 9 DC 9 10 10 DC DC C . n C 3 10 DC 10 11 11 DC DC C . n C 3 11 DT 11 12 12 DT DT C . n C 3 12 DT 12 13 13 DT DT C . n C 3 13 DG 13 14 14 DG DG C . n C 3 14 DA 14 15 ? ? ? C . n C 3 15 DC 15 16 ? ? ? C . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 DTP ? ? DTP ? ? 'SUBJECT OF INVESTIGATION' ? 2 TTD ? ? TTD ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DTP 1 901 901 DTP DTP A . E 5 MN 1 902 911 MN MN A . F 6 SO4 1 903 912 SO4 SO4 A . G 6 SO4 1 904 913 SO4 SO4 A . H 6 SO4 1 905 914 SO4 SO4 A . I 7 HOH 1 1001 169 HOH HOH A . I 7 HOH 2 1002 172 HOH HOH A . I 7 HOH 3 1003 110 HOH HOH A . I 7 HOH 4 1004 151 HOH HOH A . I 7 HOH 5 1005 101 HOH HOH A . I 7 HOH 6 1006 103 HOH HOH A . I 7 HOH 7 1007 193 HOH HOH A . I 7 HOH 8 1008 104 HOH HOH A . I 7 HOH 9 1009 195 HOH HOH A . I 7 HOH 10 1010 168 HOH HOH A . I 7 HOH 11 1011 165 HOH HOH A . I 7 HOH 12 1012 116 HOH HOH A . I 7 HOH 13 1013 107 HOH HOH A . I 7 HOH 14 1014 112 HOH HOH A . I 7 HOH 15 1015 160 HOH HOH A . I 7 HOH 16 1016 199 HOH HOH A . I 7 HOH 17 1017 171 HOH HOH A . I 7 HOH 18 1018 105 HOH HOH A . I 7 HOH 19 1019 119 HOH HOH A . I 7 HOH 20 1020 156 HOH HOH A . I 7 HOH 21 1021 152 HOH HOH A . I 7 HOH 22 1022 150 HOH HOH A . I 7 HOH 23 1023 148 HOH HOH A . I 7 HOH 24 1024 164 HOH HOH A . I 7 HOH 25 1025 111 HOH HOH A . I 7 HOH 26 1026 182 HOH HOH A . I 7 HOH 27 1027 167 HOH HOH A . I 7 HOH 28 1028 191 HOH HOH A . I 7 HOH 29 1029 154 HOH HOH A . I 7 HOH 30 1030 114 HOH HOH A . I 7 HOH 31 1031 118 HOH HOH A . I 7 HOH 32 1032 113 HOH HOH A . I 7 HOH 33 1033 174 HOH HOH A . I 7 HOH 34 1034 115 HOH HOH A . I 7 HOH 35 1035 188 HOH HOH A . I 7 HOH 36 1036 183 HOH HOH A . I 7 HOH 37 1037 117 HOH HOH A . I 7 HOH 38 1038 173 HOH HOH A . I 7 HOH 39 1039 176 HOH HOH A . I 7 HOH 40 1040 145 HOH HOH A . I 7 HOH 41 1041 106 HOH HOH A . I 7 HOH 42 1042 109 HOH HOH A . I 7 HOH 43 1043 102 HOH HOH A . I 7 HOH 44 1044 149 HOH HOH A . I 7 HOH 45 1045 187 HOH HOH A . I 7 HOH 46 1046 166 HOH HOH A . I 7 HOH 47 1047 189 HOH HOH A . I 7 HOH 48 1048 126 HOH HOH A . I 7 HOH 49 1049 131 HOH HOH A . I 7 HOH 50 1050 121 HOH HOH A . I 7 HOH 51 1051 130 HOH HOH A . I 7 HOH 52 1052 127 HOH HOH A . I 7 HOH 53 1053 157 HOH HOH A . I 7 HOH 54 1054 120 HOH HOH A . I 7 HOH 55 1055 186 HOH HOH A . I 7 HOH 56 1056 122 HOH HOH A . I 7 HOH 57 1057 146 HOH HOH A . I 7 HOH 58 1058 108 HOH HOH A . I 7 HOH 59 1059 128 HOH HOH A . I 7 HOH 60 1060 137 HOH HOH A . I 7 HOH 61 1061 124 HOH HOH A . I 7 HOH 62 1062 129 HOH HOH A . I 7 HOH 63 1063 153 HOH HOH A . I 7 HOH 64 1064 158 HOH HOH A . I 7 HOH 65 1065 123 HOH HOH A . I 7 HOH 66 1066 175 HOH HOH A . I 7 HOH 67 1067 159 HOH HOH A . I 7 HOH 68 1068 134 HOH HOH A . I 7 HOH 69 1069 135 HOH HOH A . I 7 HOH 70 1070 136 HOH HOH A . I 7 HOH 71 1071 155 HOH HOH A . I 7 HOH 72 1072 197 HOH HOH A . I 7 HOH 73 1073 163 HOH HOH A . I 7 HOH 74 1074 192 HOH HOH A . I 7 HOH 75 1075 132 HOH HOH A . I 7 HOH 76 1076 194 HOH HOH A . I 7 HOH 77 1077 179 HOH HOH A . I 7 HOH 78 1078 177 HOH HOH A . I 7 HOH 79 1079 161 HOH HOH A . I 7 HOH 80 1080 180 HOH HOH A . I 7 HOH 81 1081 162 HOH HOH A . I 7 HOH 82 1082 200 HOH HOH A . I 7 HOH 83 1083 141 HOH HOH A . I 7 HOH 84 1084 147 HOH HOH A . I 7 HOH 85 1085 138 HOH HOH A . I 7 HOH 86 1086 142 HOH HOH A . I 7 HOH 87 1087 170 HOH HOH A . I 7 HOH 88 1088 140 HOH HOH A . I 7 HOH 89 1089 139 HOH HOH A . I 7 HOH 90 1090 143 HOH HOH A . I 7 HOH 91 1091 198 HOH HOH A . I 7 HOH 92 1092 181 HOH HOH A . I 7 HOH 93 1093 144 HOH HOH A . I 7 HOH 94 1094 133 HOH HOH A . J 7 HOH 1 101 184 HOH HOH B . K 7 HOH 1 101 196 HOH HOH C . K 7 HOH 2 102 185 HOH HOH C . K 7 HOH 3 103 190 HOH HOH C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0430 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.8.3 ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 9YD2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 92.140 _cell.length_a_esd ? _cell.length_b 92.140 _cell.length_b_esd ? _cell.length_c 189.690 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9YD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9YD2 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.14 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;46% (v/v) saturated ammonium sulfate, 10 mM manganese sulfate (MnSO4), 100 mM 2-(N-morpholino)ethanesulfonic acid (MES), 5% 2-methyl-1,3-propanediol (MPD), 1 mM 2',3'-dideoxyguanosine triphosphate, 5 mM 2'-deoxyadenosine triphosphate ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 290 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-03-26 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9YD2 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.249 _reflns.d_resolution_low 79.8 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 44763 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.64 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.063 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.249 _reflns_shell.d_res_low 2.31 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.42 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3028 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.0 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.616 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 92.4 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.001 _refine.aniso_B[1][2] 0.001 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 0.001 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.004 _refine.B_iso_max ? _refine.B_iso_mean 57.896 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9YD2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.249 _refine.ls_d_res_low 79.796 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 44763 _refine.ls_number_reflns_R_free 2372 _refine.ls_number_reflns_R_work 42391 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.229 _refine.ls_percent_reflns_R_free 5.299 _refine.ls_R_factor_all 0.228 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2853 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2247 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.258 _refine.pdbx_overall_ESU_R_Free 0.232 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 9.217 _refine.overall_SU_ML 0.215 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.249 _refine_hist.d_res_low 79.796 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 5300 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 4651 _refine_hist.pdbx_number_atoms_nucleic_acid 505 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 0.012 5349 ? r_bond_refined_d ? ? ? 'X-RAY DIFFRACTION' ? 0.001 0.016 4932 ? r_bond_other_d ? ? ? 'X-RAY DIFFRACTION' ? 1.948 1.844 7341 ? r_angle_refined_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.642 1.760 11365 ? r_angle_other_deg ? ? ? 'X-RAY DIFFRACTION' ? 7.054 5.000 581 ? r_dihedral_angle_1_deg ? ? ? 'X-RAY DIFFRACTION' ? 9.683 5.000 44 ? r_dihedral_angle_2_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.609 5.000 19 ? r_dihedral_angle_other_2_deg ? ? ? 'X-RAY DIFFRACTION' ? 16.610 10.000 876 ? r_dihedral_angle_3_deg ? ? ? 'X-RAY DIFFRACTION' ? 14.523 10.000 229 ? r_dihedral_angle_6_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.090 0.200 828 ? r_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.009 0.020 5898 ? r_gen_planes_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1161 ? r_gen_planes_other ? ? ? 'X-RAY DIFFRACTION' ? 0.241 0.200 1155 ? r_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.200 0.200 4655 ? r_symmetry_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? 0.190 0.200 2540 ? r_nbtor_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.083 0.200 2822 ? r_symmetry_nbtor_other ? ? ? 'X-RAY DIFFRACTION' ? 0.180 0.200 173 ? r_xyhbond_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.107 0.200 1 ? r_symmetry_xyhbond_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? 0.198 0.200 16 ? r_symmetry_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.145 0.200 50 ? r_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? 0.158 0.200 9 ? r_symmetry_xyhbond_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.036 0.200 1 ? r_xyhbond_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? 5.889 5.347 2321 ? r_mcbond_it ? ? ? 'X-RAY DIFFRACTION' ? 5.888 5.348 2321 ? r_mcbond_other ? ? ? 'X-RAY DIFFRACTION' ? 8.319 9.594 2900 ? r_mcangle_it ? ? ? 'X-RAY DIFFRACTION' ? 8.319 9.595 2901 ? r_mcangle_other ? ? ? 'X-RAY DIFFRACTION' ? 7.122 6.480 3028 ? r_scbond_it ? ? ? 'X-RAY DIFFRACTION' ? 7.077 6.470 3016 ? r_scbond_other ? ? ? 'X-RAY DIFFRACTION' ? 10.642 11.698 4438 ? r_scangle_it ? ? ? 'X-RAY DIFFRACTION' ? 10.575 11.683 4421 ? r_scangle_other ? ? ? 'X-RAY DIFFRACTION' ? 13.608 57.786 6153 ? r_lrange_it ? ? ? 'X-RAY DIFFRACTION' ? 13.615 57.835 6144 ? r_lrange_other ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.249 2.308 3281 . 137 2885 92.1061 . 0.410 . . 0.410 . . . . . 0.408 . . . . . 20 . 0.879 0.899 0.404 'X-RAY DIFFRACTION' 2.308 2.371 3204 . 176 2951 97.5968 . 0.355 . . 0.354 . . . . . 0.330 . . . . . 20 . 0.911 0.895 0.381 'X-RAY DIFFRACTION' 2.371 2.440 3097 . 204 2893 100.0000 . 0.326 . . 0.322 . . . . . 0.289 . . . . . 20 . 0.928 0.894 0.383 'X-RAY DIFFRACTION' 2.440 2.515 3042 . 152 2890 100.0000 . 0.303 . . 0.301 . . . . . 0.262 . . . . . 20 . 0.938 0.917 0.339 'X-RAY DIFFRACTION' 2.515 2.597 2932 . 131 2800 99.9659 . 0.286 . . 0.283 . . . . . 0.237 . . . . . 20 . 0.947 0.926 0.350 'X-RAY DIFFRACTION' 2.597 2.688 2849 . 164 2685 100.0000 . 0.278 . . 0.272 . . . . . 0.226 . . . . . 20 . 0.953 0.918 0.371 'X-RAY DIFFRACTION' 2.688 2.789 2771 . 133 2638 100.0000 . 0.266 . . 0.264 . . . . . 0.215 . . . . . 20 . 0.956 0.942 0.318 'X-RAY DIFFRACTION' 2.789 2.903 2632 . 149 2483 100.0000 . 0.266 . . 0.261 . . . . . 0.222 . . . . . 20 . 0.954 0.917 0.347 'X-RAY DIFFRACTION' 2.903 3.032 2534 . 133 2401 100.0000 . 0.244 . . 0.238 . . . . . 0.204 . . . . . 20 . 0.963 0.920 0.353 'X-RAY DIFFRACTION' 3.032 3.180 2475 . 121 2354 100.0000 . 0.241 . . 0.237 . . . . . 0.207 . . . . . 20 . 0.963 0.930 0.326 'X-RAY DIFFRACTION' 3.180 3.352 2317 . 121 2195 99.9568 . 0.251 . . 0.248 . . . . . 0.225 . . . . . 20 . 0.962 0.938 0.311 'X-RAY DIFFRACTION' 3.352 3.554 2210 . 98 2110 99.9095 . 0.230 . . 0.226 . . . . . 0.207 . . . . . 20 . 0.971 0.944 0.308 'X-RAY DIFFRACTION' 3.554 3.799 2081 . 114 1966 99.9520 . 0.218 . . 0.214 . . . . . 0.196 . . . . . 20 . 0.972 0.941 0.302 'X-RAY DIFFRACTION' 3.799 4.103 1935 . 119 1815 99.9483 . 0.208 . . 0.203 . . . . . 0.191 . . . . . 20 . 0.973 0.955 0.274 'X-RAY DIFFRACTION' 4.103 4.493 1802 . 113 1689 100.0000 . 0.170 . . 0.168 . . . . . 0.162 . . . . . 20 . 0.982 0.975 0.201 'X-RAY DIFFRACTION' 4.493 5.022 1645 . 85 1560 100.0000 . 0.148 . . 0.145 . . . . . 0.146 . . . . . 20 . 0.987 0.977 0.201 'X-RAY DIFFRACTION' 5.022 5.795 1461 . 68 1393 100.0000 . 0.203 . . 0.200 . . . . . 0.199 . . . . . 20 . 0.979 0.964 0.256 'X-RAY DIFFRACTION' 5.795 7.088 1249 . 61 1188 100.0000 . 0.214 . . 0.210 . . . . . 0.210 . . . . . 20 . 0.974 0.947 0.276 'X-RAY DIFFRACTION' 7.088 9.984 991 . 64 927 100.0000 . 0.171 . . 0.166 . . . . . 0.188 . . . . . 20 . 0.982 0.962 0.241 'X-RAY DIFFRACTION' 9.984 79.796 601 . 29 568 99.3344 . 0.231 . . 0.231 . . . . . 0.277 . . . . . 20 . 0.951 0.971 0.217 # _struct.entry_id 9YD2 _struct.title ;Ternary complex of DNA polymerase I from Bacillus stearothermophilus, large fragment, bound to DNA containing a thymine dimer and dATP ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9YD2 _struct_keywords.text 'polymerase, complex, REPLICATION' _struct_keywords.pdbx_keywords REPLICATION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? I N N 7 ? J N N 7 ? K N N 7 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP D9N168_GEOSE D9N168 ? 1 ;KMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAA VALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWEL ERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVI LFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLS STEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEV TPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDIT SRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVT LRVPLKVDYHYGSTWYDAK ; 1 2 PDB 9YD2 9YD2 ? 2 ? 1 3 PDB 9YD2 9YD2 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9YD2 A 3 ? 581 ? D9N168 1 ? 579 ? 298 876 2 2 9YD2 B 1 ? 11 ? 9YD2 19 ? 29 ? 19 29 3 3 9YD2 C 1 ? 15 ? 9YD2 2 ? 16 ? 2 16 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9YD2 MET A 1 ? UNP D9N168 ? ? 'initiating methionine' 296 1 1 9YD2 ALA A 2 ? UNP D9N168 ? ? 'expression tag' 297 2 1 9YD2 VAL A 418 ? UNP D9N168 PRO 416 conflict 713 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7360 ? 1 MORE -59 ? 1 'SSA (A^2)' 28300 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 13 ? ALA A 18 ? THR A 308 ALA A 313 5 ? 6 HELX_P HELX_P2 AA2 ARG A 52 ? LEU A 57 ? ARG A 347 LEU A 352 1 ? 6 HELX_P HELX_P3 AA3 ASP A 59 ? ASP A 68 ? ASP A 354 ASP A 363 1 ? 10 HELX_P HELX_P4 AA4 ASP A 77 ? TRP A 87 ? ASP A 372 TRP A 382 1 ? 11 HELX_P HELX_P5 AA5 LEU A 99 ? ASP A 107 ? LEU A 394 ASP A 402 1 ? 9 HELX_P HELX_P6 AA6 PRO A 108 ? GLY A 111 ? PRO A 403 GLY A 406 5 ? 4 HELX_P HELX_P7 AA7 ASP A 114 ? MET A 121 ? ASP A 409 MET A 416 1 ? 8 HELX_P HELX_P8 AA8 PRO A 129 ? GLY A 135 ? PRO A 424 GLY A 430 1 ? 7 HELX_P HELX_P9 AA9 ASP A 144 ? ASN A 173 ? ASP A 439 ASN A 468 1 ? 30 HELX_P HELX_P10 AB1 GLN A 175 ? GLU A 181 ? GLN A 470 GLU A 476 1 ? 7 HELX_P HELX_P11 AB2 LEU A 182 ? GLY A 197 ? LEU A 477 GLY A 492 1 ? 16 HELX_P HELX_P12 AB3 ASP A 201 ? GLY A 228 ? ASP A 496 GLY A 523 1 ? 28 HELX_P HELX_P13 AB4 SER A 235 ? GLU A 245 ? SER A 530 GLU A 540 1 ? 11 HELX_P HELX_P14 AB5 SER A 262 ? LEU A 269 ? SER A 557 LEU A 564 1 ? 8 HELX_P HELX_P15 AB6 GLU A 274 ? THR A 291 ? GLU A 569 THR A 586 1 ? 18 HELX_P HELX_P16 AB7 TYR A 292 ? VAL A 300 ? TYR A 587 VAL A 595 1 ? 9 HELX_P HELX_P17 AB8 LEU A 335 ? LYS A 340 ? LEU A 630 LYS A 635 1 ? 6 HELX_P HELX_P18 AB9 ILE A 341 ? GLN A 343 ? ILE A 636 GLN A 638 5 ? 3 HELX_P HELX_P19 AC1 GLN A 361 ? GLU A 372 ? GLN A 656 GLU A 667 1 ? 12 HELX_P HELX_P20 AC2 ASP A 373 ? ARG A 382 ? ASP A 668 ARG A 677 1 ? 10 HELX_P HELX_P21 AC3 ASP A 385 ? PHE A 395 ? ASP A 680 PHE A 690 1 ? 11 HELX_P HELX_P22 AC4 SER A 398 ? VAL A 402 ? SER A 693 VAL A 697 5 ? 5 HELX_P HELX_P23 AC5 THR A 403 ? TYR A 419 ? THR A 698 TYR A 714 1 ? 17 HELX_P HELX_P24 AC6 SER A 422 ? ASN A 431 ? SER A 717 ASN A 726 1 ? 10 HELX_P HELX_P25 AC7 SER A 433 ? PHE A 448 ? SER A 728 PHE A 743 1 ? 16 HELX_P HELX_P26 AC8 PHE A 448 ? GLY A 466 ? PHE A 743 GLY A 761 1 ? 19 HELX_P HELX_P27 AC9 PRO A 479 ? SER A 483 ? PRO A 774 SER A 778 5 ? 5 HELX_P HELX_P28 AD1 ASN A 485 ? GLU A 523 ? ASN A 780 GLU A 818 1 ? 39 HELX_P HELX_P29 AD2 GLU A 545 ? ALA A 560 ? GLU A 840 ALA A 855 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 10 "O3'" ? ? ? 1_555 B DDG 11 P ? ? B DT 28 B DDG 29 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale2 covale both ? C DA 1 "O3'" ? ? ? 1_555 C TTD 2 P ? ? C DA 2 C TTD 3 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale3 covale both ? C TTD 2 "O3'" ? ? ? 1_555 C DC 3 P ? ? C TTD 3 C DC 4 1_555 ? ? ? ? ? ? ? 1.589 ? ? metalc1 metalc ? ? D DTP . O3G ? ? ? 1_555 E MN . MN ? ? A DTP 901 A MN 902 1_555 ? ? ? ? ? ? ? 2.182 ? ? metalc2 metalc ? ? D DTP . O1B ? ? ? 1_555 E MN . MN ? ? A DTP 901 A MN 902 1_555 ? ? ? ? ? ? ? 2.207 ? ? metalc3 metalc ? ? D DTP . O1A ? ? ? 1_555 E MN . MN ? ? A DTP 901 A MN 902 1_555 ? ? ? ? ? ? ? 2.778 ? ? hydrog1 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 13 N1 ? ? B DC 19 C DG 14 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 12 N3 ? ? B DA 20 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 12 O4 ? ? B DA 20 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 21 C DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 21 C DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 22 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 22 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 22 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 23 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 23 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 23 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 24 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 24 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 25 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 25 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 25 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 6 N3 ? ? B DA 26 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 6 O4 ? ? B DA 26 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 27 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 27 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 27 C DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 28 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 28 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DDG 11 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DDG 29 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DDG 11 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DDG 29 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DDG 11 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DDG 29 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O3G ? D DTP . ? A DTP 901 ? 1_555 MN ? E MN . ? A MN 902 ? 1_555 O1B ? D DTP . ? A DTP 901 ? 1_555 85.2 ? 2 O3G ? D DTP . ? A DTP 901 ? 1_555 MN ? E MN . ? A MN 902 ? 1_555 O1A ? D DTP . ? A DTP 901 ? 1_555 92.3 ? 3 O1B ? D DTP . ? A DTP 901 ? 1_555 MN ? E MN . ? A MN 902 ? 1_555 O1A ? D DTP . ? A DTP 901 ? 1_555 72.2 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 325 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 620 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 326 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 621 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -9.52 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 3 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 7 ? LEU A 8 ? THR A 302 LEU A 303 AA1 2 GLY A 47 ? LEU A 51 ? GLY A 342 LEU A 346 AA1 3 GLY A 39 ? ASN A 44 ? GLY A 334 ASN A 339 AA1 4 LYS A 20 ? GLU A 26 ? LYS A 315 GLU A 321 AA1 5 LYS A 72 ? MET A 75 ? LYS A 367 MET A 370 AA1 6 VAL A 95 ? ASP A 98 ? VAL A 390 ASP A 393 AA2 1 LYS A 306 ? VAL A 307 ? LYS A 601 VAL A 602 AA2 2 VAL A 198 ? VAL A 200 ? VAL A 493 VAL A 495 AA2 3 PHE A 345 ? VAL A 346 ? PHE A 640 VAL A 641 AA3 1 ILE A 310 ? ASN A 312 ? ILE A 605 ASN A 607 AA3 2 SER A 322 ? THR A 324 ? SER A 617 THR A 619 AA4 1 HIS A 528 ? GLN A 532 ? HIS A 823 GLN A 827 AA4 2 GLU A 536 ? PRO A 542 ? GLU A 831 PRO A 837 AA4 3 TRP A 352 ? TYR A 359 ? TRP A 647 TYR A 654 AA4 4 VAL A 569 ? GLY A 574 ? VAL A 864 GLY A 869 AA5 1 TYR A 467 ? THR A 469 ? TYR A 762 THR A 764 AA5 2 ARG A 475 ? TYR A 477 ? ARG A 770 TYR A 772 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 7 ? N THR A 302 O ARG A 48 ? O ARG A 343 AA1 2 3 O LEU A 51 ? O LEU A 346 N ILE A 40 ? N ILE A 335 AA1 3 4 O ALA A 41 ? O ALA A 336 N VAL A 24 ? N VAL A 319 AA1 4 5 N ALA A 21 ? N ALA A 316 O SER A 74 ? O SER A 369 AA1 5 6 N MET A 75 ? N MET A 370 O PHE A 97 ? O PHE A 392 AA2 1 2 O VAL A 307 ? O VAL A 602 N VAL A 198 ? N VAL A 493 AA2 2 3 N LYS A 199 ? N LYS A 494 O VAL A 346 ? O VAL A 641 AA3 1 2 N ASN A 312 ? N ASN A 607 O SER A 322 ? O SER A 617 AA4 1 2 N LEU A 530 ? N LEU A 825 O ILE A 538 ? O ILE A 833 AA4 2 3 O LEU A 539 ? O LEU A 834 N PHE A 355 ? N PHE A 650 AA4 3 4 N ILE A 354 ? N ILE A 649 O GLY A 574 ? O GLY A 869 AA5 1 2 N VAL A 468 ? N VAL A 763 O ARG A 476 ? O ARG A 771 # _pdbx_entry_details.entry_id 9YD2 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 643 ? ? OE2 A GLU 835 ? ? 2.14 2 1 OH A TYR 419 ? ? O A HOH 1001 ? ? 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG A MET 488 ? ? SD A MET 488 ? ? CE A MET 488 ? ? 110.33 100.20 10.13 1.60 N 2 1 CB A GLU 644 ? ? CA A GLU 644 ? ? C A GLU 644 ? ? 97.08 110.40 -13.32 2.00 N 3 1 CG A MET 672 ? ? SD A MET 672 ? ? CE A MET 672 ? ? 109.86 100.20 9.66 1.60 N 4 1 NE A ARG 677 ? ? CZ A ARG 677 ? ? NH1 A ARG 677 ? ? 117.00 120.30 -3.30 0.50 N 5 1 CB A LYS 706 ? ? CA A LYS 706 ? ? C A LYS 706 ? ? 97.15 110.40 -13.25 2.00 N 6 1 CG A MET 808 ? ? SD A MET 808 ? ? CE A MET 808 ? ? 110.03 100.20 9.83 1.60 N 7 1 "O4'" B DC 25 ? ? "C1'" B DC 25 ? ? N1 B DC 25 ? ? 111.12 108.30 2.82 0.30 N 8 1 "O4'" B DA 26 ? ? "C1'" B DA 26 ? ? N9 B DA 26 ? ? 111.29 108.30 2.99 0.30 N 9 1 "O5'" B DG 27 ? ? P B DG 27 ? ? OP2 B DG 27 ? ? 99.69 105.70 -6.01 0.90 N 10 1 "O3'" B DT 28 ? ? P B DDG 29 ? ? "O5'" B DDG 29 ? ? 123.04 104.00 19.04 1.90 Y 11 1 "C1'" C DA 2 ? ? "O4'" C DA 2 ? ? "C4'" C DA 2 ? ? 103.43 110.10 -6.67 1.00 N 12 1 "O4'" C DA 2 ? ? "C1'" C DA 2 ? ? N9 C DA 2 ? ? 113.88 108.30 5.58 0.30 N 13 1 "C3'" C DA 2 ? ? "O3'" C DA 2 ? ? P C TTD 3 ? ? 142.10 119.70 22.40 1.20 Y 14 1 "O3'" C DA 2 ? ? P C TTD 3 ? ? OP2 C TTD 3 ? ? 90.31 105.20 -14.89 2.20 Y 15 1 "O3'" C DA 2 ? ? P C TTD 3 ? ? OP1 C TTD 3 ? ? 127.08 110.50 16.58 1.10 Y 16 1 "C3'" C TTD 3 ? ? "O3'" C TTD 3 ? ? P C DC 4 ? ? 108.18 119.70 -11.52 1.20 Y 17 1 "O3'" C TTD 3 ? ? P C DC 4 ? ? "O5'" C DC 4 ? ? 89.49 104.00 -14.51 1.90 Y 18 1 "O3'" C TTD 3 ? ? P C DC 4 ? ? OP1 C DC 4 ? ? 142.77 110.50 32.27 1.10 Y 19 1 OP1 C DC 4 ? ? P C DC 4 ? ? OP2 C DC 4 ? ? 108.37 119.60 -11.23 1.50 N 20 1 "O4'" C DC 4 ? ? "C1'" C DC 4 ? ? "C2'" C DC 4 ? ? 109.92 106.80 3.12 0.50 N 21 1 "O5'" C DC 6 ? ? P C DC 6 ? ? OP2 C DC 6 ? ? 98.72 105.70 -6.98 0.90 N 22 1 "O5'" C DC 6 ? ? "C5'" C DC 6 ? ? "C4'" C DC 6 ? ? 102.93 109.40 -6.47 0.80 N 23 1 "O4'" C DC 6 ? ? "C1'" C DC 6 ? ? N1 C DC 6 ? ? 111.63 108.30 3.33 0.30 N 24 1 "O3'" C DC 6 ? ? P C DT 7 ? ? "O5'" C DT 7 ? ? 115.45 104.00 11.45 1.90 Y 25 1 "O3'" C DT 9 ? ? P C DC 10 ? ? "O5'" C DC 10 ? ? 91.98 104.00 -12.02 1.90 Y 26 1 "O5'" C DC 10 ? ? P C DC 10 ? ? OP2 C DC 10 ? ? 120.04 110.70 9.34 1.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 303 ? ? -69.41 77.40 2 1 THR A 350 ? ? -93.93 -62.14 3 1 ASP A 372 ? ? 60.52 61.11 4 1 ASP A 402 ? ? -160.00 96.59 5 1 GLN A 418 ? ? 76.32 32.91 6 1 ALA A 421 ? ? -79.78 38.79 7 1 LEU A 477 ? ? -125.44 -65.33 8 1 GLU A 520 ? ? -48.72 -71.63 9 1 GLN A 524 ? ? 176.64 168.88 10 1 VAL A 536 ? ? -59.94 -70.78 11 1 THR A 550 ? ? -105.60 -130.60 12 1 TYR A 587 ? ? -94.98 -63.19 13 1 LEU A 610 ? ? -127.76 -58.38 14 1 GLU A 620 ? ? 44.42 70.90 15 1 ILE A 628 ? ? -142.65 -26.02 16 1 ASP A 646 ? ? 82.04 18.15 17 1 ILE A 689 ? ? -115.19 -70.24 18 1 PHE A 690 ? ? -78.29 21.65 19 1 GLN A 691 ? ? 19.40 80.23 20 1 TYR A 719 ? ? -55.14 -77.14 21 1 ASN A 726 ? ? 82.39 18.22 22 1 PHE A 743 ? ? -118.03 69.00 23 1 HIS A 829 ? ? 71.58 -54.04 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 306 ? ? 0.081 'SIDE CHAIN' 2 1 ARG A 435 ? ? 0.085 'SIDE CHAIN' 3 1 ARG A 789 ? ? 0.141 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 296 ? A MET 1 2 1 Y 1 C DA 15 ? C DA 14 3 1 Y 1 C DC 16 ? C DC 15 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DDG OP3 O N N 158 DDG P P N N 159 DDG OP1 O N N 160 DDG OP2 O N N 161 DDG "O5'" O N N 162 DDG "C5'" C N N 163 DDG "C4'" C N S 164 DDG "O4'" O N N 165 DDG "C3'" C N N 166 DDG "C2'" C N N 167 DDG "C1'" C N R 168 DDG N9 N Y N 169 DDG C8 C Y N 170 DDG N7 N Y N 171 DDG C5 C Y N 172 DDG C6 C N N 173 DDG O6 O N N 174 DDG N1 N N N 175 DDG C2 C N N 176 DDG N2 N N N 177 DDG N3 N N N 178 DDG C4 C Y N 179 DDG HOP3 H N N 180 DDG HOP2 H N N 181 DDG "H5'" H N N 182 DDG "H5''" H N N 183 DDG "H4'" H N N 184 DDG "H3'1" H N N 185 DDG "H3'2" H N N 186 DDG "H2'" H N N 187 DDG "H2''" H N N 188 DDG "H1'" H N N 189 DDG H8 H N N 190 DDG H1 H N N 191 DDG H21 H N N 192 DDG H22 H N N 193 DG OP3 O N N 194 DG P P N N 195 DG OP1 O N N 196 DG OP2 O N N 197 DG "O5'" O N N 198 DG "C5'" C N N 199 DG "C4'" C N R 200 DG "O4'" O N N 201 DG "C3'" C N S 202 DG "O3'" O N N 203 DG "C2'" C N N 204 DG "C1'" C N R 205 DG N9 N Y N 206 DG C8 C Y N 207 DG N7 N Y N 208 DG C5 C Y N 209 DG C6 C N N 210 DG O6 O N N 211 DG N1 N N N 212 DG C2 C N N 213 DG N2 N N N 214 DG N3 N N N 215 DG C4 C Y N 216 DG HOP3 H N N 217 DG HOP2 H N N 218 DG "H5'" H N N 219 DG "H5''" H N N 220 DG "H4'" H N N 221 DG "H3'" H N N 222 DG "HO3'" H N N 223 DG "H2'" H N N 224 DG "H2''" H N N 225 DG "H1'" H N N 226 DG H8 H N N 227 DG H1 H N N 228 DG H21 H N N 229 DG H22 H N N 230 DT OP3 O N N 231 DT P P N N 232 DT OP1 O N N 233 DT OP2 O N N 234 DT "O5'" O N N 235 DT "C5'" C N N 236 DT "C4'" C N R 237 DT "O4'" O N N 238 DT "C3'" C N S 239 DT "O3'" O N N 240 DT "C2'" C N N 241 DT "C1'" C N R 242 DT N1 N N N 243 DT C2 C N N 244 DT O2 O N N 245 DT N3 N N N 246 DT C4 C N N 247 DT O4 O N N 248 DT C5 C N N 249 DT C7 C N N 250 DT C6 C N N 251 DT HOP3 H N N 252 DT HOP2 H N N 253 DT "H5'" H N N 254 DT "H5''" H N N 255 DT "H4'" H N N 256 DT "H3'" H N N 257 DT "HO3'" H N N 258 DT "H2'" H N N 259 DT "H2''" H N N 260 DT "H1'" H N N 261 DT H3 H N N 262 DT H71 H N N 263 DT H72 H N N 264 DT H73 H N N 265 DT H6 H N N 266 DTP PG P N N 267 DTP O1G O N N 268 DTP O2G O N N 269 DTP O3G O N N 270 DTP PB P N S 271 DTP O1B O N N 272 DTP O2B O N N 273 DTP O3B O N N 274 DTP PA P N S 275 DTP O1A O N N 276 DTP O2A O N N 277 DTP O3A O N N 278 DTP "O5'" O N N 279 DTP "C5'" C N N 280 DTP "C4'" C N R 281 DTP "O4'" O N N 282 DTP "C3'" C N S 283 DTP "O3'" O N N 284 DTP "C2'" C N N 285 DTP "C1'" C N R 286 DTP N9 N Y N 287 DTP C8 C Y N 288 DTP N7 N Y N 289 DTP C5 C Y N 290 DTP C6 C Y N 291 DTP N6 N N N 292 DTP N1 N Y N 293 DTP C2 C Y N 294 DTP N3 N Y N 295 DTP C4 C Y N 296 DTP HOG2 H N N 297 DTP HOG3 H N N 298 DTP HOB2 H N N 299 DTP HOA2 H N N 300 DTP "H5'1" H N N 301 DTP "H5'2" H N N 302 DTP "H4'" H N N 303 DTP "H3'" H N N 304 DTP "HO3'" H N N 305 DTP "H2'1" H N N 306 DTP "H2'2" H N N 307 DTP "H1'" H N N 308 DTP H8 H N N 309 DTP HN61 H N N 310 DTP HN62 H N N 311 DTP H2 H N N 312 GLN N N N N 313 GLN CA C N S 314 GLN C C N N 315 GLN O O N N 316 GLN CB C N N 317 GLN CG C N N 318 GLN CD C N N 319 GLN OE1 O N N 320 GLN NE2 N N N 321 GLN OXT O N N 322 GLN H H N N 323 GLN H2 H N N 324 GLN HA H N N 325 GLN HB2 H N N 326 GLN HB3 H N N 327 GLN HG2 H N N 328 GLN HG3 H N N 329 GLN HE21 H N N 330 GLN HE22 H N N 331 GLN HXT H N N 332 GLU N N N N 333 GLU CA C N S 334 GLU C C N N 335 GLU O O N N 336 GLU CB C N N 337 GLU CG C N N 338 GLU CD C N N 339 GLU OE1 O N N 340 GLU OE2 O N N 341 GLU OXT O N N 342 GLU H H N N 343 GLU H2 H N N 344 GLU HA H N N 345 GLU HB2 H N N 346 GLU HB3 H N N 347 GLU HG2 H N N 348 GLU HG3 H N N 349 GLU HE2 H N N 350 GLU HXT H N N 351 GLY N N N N 352 GLY CA C N N 353 GLY C C N N 354 GLY O O N N 355 GLY OXT O N N 356 GLY H H N N 357 GLY H2 H N N 358 GLY HA2 H N N 359 GLY HA3 H N N 360 GLY HXT H N N 361 HIS N N N N 362 HIS CA C N S 363 HIS C C N N 364 HIS O O N N 365 HIS CB C N N 366 HIS CG C Y N 367 HIS ND1 N Y N 368 HIS CD2 C Y N 369 HIS CE1 C Y N 370 HIS NE2 N Y N 371 HIS OXT O N N 372 HIS H H N N 373 HIS H2 H N N 374 HIS HA H N N 375 HIS HB2 H N N 376 HIS HB3 H N N 377 HIS HD1 H N N 378 HIS HD2 H N N 379 HIS HE1 H N N 380 HIS HE2 H N N 381 HIS HXT H N N 382 HOH O O N N 383 HOH H1 H N N 384 HOH H2 H N N 385 ILE N N N N 386 ILE CA C N S 387 ILE C C N N 388 ILE O O N N 389 ILE CB C N S 390 ILE CG1 C N N 391 ILE CG2 C N N 392 ILE CD1 C N N 393 ILE OXT O N N 394 ILE H H N N 395 ILE H2 H N N 396 ILE HA H N N 397 ILE HB H N N 398 ILE HG12 H N N 399 ILE HG13 H N N 400 ILE HG21 H N N 401 ILE HG22 H N N 402 ILE HG23 H N N 403 ILE HD11 H N N 404 ILE HD12 H N N 405 ILE HD13 H N N 406 ILE HXT H N N 407 LEU N N N N 408 LEU CA C N S 409 LEU C C N N 410 LEU O O N N 411 LEU CB C N N 412 LEU CG C N N 413 LEU CD1 C N N 414 LEU CD2 C N N 415 LEU OXT O N N 416 LEU H H N N 417 LEU H2 H N N 418 LEU HA H N N 419 LEU HB2 H N N 420 LEU HB3 H N N 421 LEU HG H N N 422 LEU HD11 H N N 423 LEU HD12 H N N 424 LEU HD13 H N N 425 LEU HD21 H N N 426 LEU HD22 H N N 427 LEU HD23 H N N 428 LEU HXT H N N 429 LYS N N N N 430 LYS CA C N S 431 LYS C C N N 432 LYS O O N N 433 LYS CB C N N 434 LYS CG C N N 435 LYS CD C N N 436 LYS CE C N N 437 LYS NZ N N N 438 LYS OXT O N N 439 LYS H H N N 440 LYS H2 H N N 441 LYS HA H N N 442 LYS HB2 H N N 443 LYS HB3 H N N 444 LYS HG2 H N N 445 LYS HG3 H N N 446 LYS HD2 H N N 447 LYS HD3 H N N 448 LYS HE2 H N N 449 LYS HE3 H N N 450 LYS HZ1 H N N 451 LYS HZ2 H N N 452 LYS HZ3 H N N 453 LYS HXT H N N 454 MET N N N N 455 MET CA C N S 456 MET C C N N 457 MET O O N N 458 MET CB C N N 459 MET CG C N N 460 MET SD S N N 461 MET CE C N N 462 MET OXT O N N 463 MET H H N N 464 MET H2 H N N 465 MET HA H N N 466 MET HB2 H N N 467 MET HB3 H N N 468 MET HG2 H N N 469 MET HG3 H N N 470 MET HE1 H N N 471 MET HE2 H N N 472 MET HE3 H N N 473 MET HXT H N N 474 MN MN MN N N 475 PHE N N N N 476 PHE CA C N S 477 PHE C C N N 478 PHE O O N N 479 PHE CB C N N 480 PHE CG C Y N 481 PHE CD1 C Y N 482 PHE CD2 C Y N 483 PHE CE1 C Y N 484 PHE CE2 C Y N 485 PHE CZ C Y N 486 PHE OXT O N N 487 PHE H H N N 488 PHE H2 H N N 489 PHE HA H N N 490 PHE HB2 H N N 491 PHE HB3 H N N 492 PHE HD1 H N N 493 PHE HD2 H N N 494 PHE HE1 H N N 495 PHE HE2 H N N 496 PHE HZ H N N 497 PHE HXT H N N 498 PRO N N N N 499 PRO CA C N S 500 PRO C C N N 501 PRO O O N N 502 PRO CB C N N 503 PRO CG C N N 504 PRO CD C N N 505 PRO OXT O N N 506 PRO H H N N 507 PRO HA H N N 508 PRO HB2 H N N 509 PRO HB3 H N N 510 PRO HG2 H N N 511 PRO HG3 H N N 512 PRO HD2 H N N 513 PRO HD3 H N N 514 PRO HXT H N N 515 SER N N N N 516 SER CA C N S 517 SER C C N N 518 SER O O N N 519 SER CB C N N 520 SER OG O N N 521 SER OXT O N N 522 SER H H N N 523 SER H2 H N N 524 SER HA H N N 525 SER HB2 H N N 526 SER HB3 H N N 527 SER HG H N N 528 SER HXT H N N 529 SO4 S S N N 530 SO4 O1 O N N 531 SO4 O2 O N N 532 SO4 O3 O N N 533 SO4 O4 O N N 534 THR N N N N 535 THR CA C N S 536 THR C C N N 537 THR O O N N 538 THR CB C N R 539 THR OG1 O N N 540 THR CG2 C N N 541 THR OXT O N N 542 THR H H N N 543 THR H2 H N N 544 THR HA H N N 545 THR HB H N N 546 THR HG1 H N N 547 THR HG21 H N N 548 THR HG22 H N N 549 THR HG23 H N N 550 THR HXT H N N 551 TRP N N N N 552 TRP CA C N S 553 TRP C C N N 554 TRP O O N N 555 TRP CB C N N 556 TRP CG C Y N 557 TRP CD1 C Y N 558 TRP CD2 C Y N 559 TRP NE1 N Y N 560 TRP CE2 C Y N 561 TRP CE3 C Y N 562 TRP CZ2 C Y N 563 TRP CZ3 C Y N 564 TRP CH2 C Y N 565 TRP OXT O N N 566 TRP H H N N 567 TRP H2 H N N 568 TRP HA H N N 569 TRP HB2 H N N 570 TRP HB3 H N N 571 TRP HD1 H N N 572 TRP HE1 H N N 573 TRP HE3 H N N 574 TRP HZ2 H N N 575 TRP HZ3 H N N 576 TRP HH2 H N N 577 TRP HXT H N N 578 TTD P P N N 579 TTD OP1 O N N 580 TTD OP2 O N N 581 TTD OP3 O N N 582 TTD "O5'" O N N 583 TTD "C5'" C N N 584 TTD C4R C N R 585 TTD "O4'" O N N 586 TTD C3R C N S 587 TTD O3R O N N 588 TTD "C2'" C N N 589 TTD "C1'" C N R 590 TTD N1 N N N 591 TTD C2 C N N 592 TTD O2 O N N 593 TTD N3 N N N 594 TTD C4 C N N 595 TTD O4 O N N 596 TTD C5 C N R 597 TTD C5A C N N 598 TTD C6 C N R 599 TTD PB P N S 600 TTD O5P O N N 601 TTD O4P O N N 602 TTD O5R O N N 603 TTD C5R C N N 604 TTD O4R O N N 605 TTD C2R C N N 606 TTD C1R C N R 607 TTD N1T N N N 608 TTD C2T C N N 609 TTD O2T O N N 610 TTD N3T N N N 611 TTD C4T C N N 612 TTD O4T O N N 613 TTD C5T C N S 614 TTD C5M C N N 615 TTD C6T C N S 616 TTD "C4'" C N R 617 TTD "C3'" C N S 618 TTD "O3'" O N N 619 TTD HOP2 H N N 620 TTD HOP3 H N N 621 TTD "H5'" H N N 622 TTD "H5''" H N N 623 TTD H4R H N N 624 TTD H3R H N N 625 TTD "H2'" H N N 626 TTD "H2''" H N N 627 TTD "H1'" H N N 628 TTD HN3 H N N 629 TTD H5A1 H N N 630 TTD H5A2 H N N 631 TTD H5A3 H N N 632 TTD H6 H N N 633 TTD H4P H N N 634 TTD H5R1 H N N 635 TTD H5R2 H N N 636 TTD H2R1 H N N 637 TTD H2R2 H N N 638 TTD H1R H N N 639 TTD HT H N N 640 TTD H71 H N N 641 TTD H72 H N N 642 TTD H73 H N N 643 TTD H6T H N N 644 TTD "H4'" H N N 645 TTD H1 H N N 646 TTD "HO3'" H N N 647 TYR N N N N 648 TYR CA C N S 649 TYR C C N N 650 TYR O O N N 651 TYR CB C N N 652 TYR CG C Y N 653 TYR CD1 C Y N 654 TYR CD2 C Y N 655 TYR CE1 C Y N 656 TYR CE2 C Y N 657 TYR CZ C Y N 658 TYR OH O N N 659 TYR OXT O N N 660 TYR H H N N 661 TYR H2 H N N 662 TYR HA H N N 663 TYR HB2 H N N 664 TYR HB3 H N N 665 TYR HD1 H N N 666 TYR HD2 H N N 667 TYR HE1 H N N 668 TYR HE2 H N N 669 TYR HH H N N 670 TYR HXT H N N 671 VAL N N N N 672 VAL CA C N S 673 VAL C C N N 674 VAL O O N N 675 VAL CB C N N 676 VAL CG1 C N N 677 VAL CG2 C N N 678 VAL OXT O N N 679 VAL H H N N 680 VAL H2 H N N 681 VAL HA H N N 682 VAL HB H N N 683 VAL HG11 H N N 684 VAL HG12 H N N 685 VAL HG13 H N N 686 VAL HG21 H N N 687 VAL HG22 H N N 688 VAL HG23 H N N 689 VAL HXT H N N 690 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DDG OP3 P sing N N 156 DDG OP3 HOP3 sing N N 157 DDG P OP1 doub N N 158 DDG P OP2 sing N N 159 DDG P "O5'" sing N N 160 DDG OP2 HOP2 sing N N 161 DDG "O5'" "C5'" sing N N 162 DDG "C5'" "C4'" sing N N 163 DDG "C5'" "H5'" sing N N 164 DDG "C5'" "H5''" sing N N 165 DDG "C4'" "O4'" sing N N 166 DDG "C4'" "C3'" sing N N 167 DDG "C4'" "H4'" sing N N 168 DDG "O4'" "C1'" sing N N 169 DDG "C3'" "C2'" sing N N 170 DDG "C3'" "H3'1" sing N N 171 DDG "C3'" "H3'2" sing N N 172 DDG "C2'" "C1'" sing N N 173 DDG "C2'" "H2'" sing N N 174 DDG "C2'" "H2''" sing N N 175 DDG "C1'" N9 sing N N 176 DDG "C1'" "H1'" sing N N 177 DDG N9 C8 sing Y N 178 DDG N9 C4 sing Y N 179 DDG C8 N7 doub Y N 180 DDG C8 H8 sing N N 181 DDG N7 C5 sing Y N 182 DDG C5 C6 sing N N 183 DDG C5 C4 doub Y N 184 DDG C6 O6 doub N N 185 DDG C6 N1 sing N N 186 DDG N1 C2 sing N N 187 DDG N1 H1 sing N N 188 DDG C2 N2 sing N N 189 DDG C2 N3 doub N N 190 DDG N2 H21 sing N N 191 DDG N2 H22 sing N N 192 DDG N3 C4 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DT OP3 P sing N N 233 DT OP3 HOP3 sing N N 234 DT P OP1 doub N N 235 DT P OP2 sing N N 236 DT P "O5'" sing N N 237 DT OP2 HOP2 sing N N 238 DT "O5'" "C5'" sing N N 239 DT "C5'" "C4'" sing N N 240 DT "C5'" "H5'" sing N N 241 DT "C5'" "H5''" sing N N 242 DT "C4'" "O4'" sing N N 243 DT "C4'" "C3'" sing N N 244 DT "C4'" "H4'" sing N N 245 DT "O4'" "C1'" sing N N 246 DT "C3'" "O3'" sing N N 247 DT "C3'" "C2'" sing N N 248 DT "C3'" "H3'" sing N N 249 DT "O3'" "HO3'" sing N N 250 DT "C2'" "C1'" sing N N 251 DT "C2'" "H2'" sing N N 252 DT "C2'" "H2''" sing N N 253 DT "C1'" N1 sing N N 254 DT "C1'" "H1'" sing N N 255 DT N1 C2 sing N N 256 DT N1 C6 sing N N 257 DT C2 O2 doub N N 258 DT C2 N3 sing N N 259 DT N3 C4 sing N N 260 DT N3 H3 sing N N 261 DT C4 O4 doub N N 262 DT C4 C5 sing N N 263 DT C5 C7 sing N N 264 DT C5 C6 doub N N 265 DT C7 H71 sing N N 266 DT C7 H72 sing N N 267 DT C7 H73 sing N N 268 DT C6 H6 sing N N 269 DTP PG O1G doub N N 270 DTP PG O2G sing N N 271 DTP PG O3G sing N N 272 DTP PG O3B sing N N 273 DTP O2G HOG2 sing N N 274 DTP O3G HOG3 sing N N 275 DTP PB O1B doub N N 276 DTP PB O2B sing N N 277 DTP PB O3B sing N N 278 DTP PB O3A sing N N 279 DTP O2B HOB2 sing N N 280 DTP PA O1A doub N N 281 DTP PA O2A sing N N 282 DTP PA O3A sing N N 283 DTP PA "O5'" sing N N 284 DTP O2A HOA2 sing N N 285 DTP "O5'" "C5'" sing N N 286 DTP "C5'" "C4'" sing N N 287 DTP "C5'" "H5'1" sing N N 288 DTP "C5'" "H5'2" sing N N 289 DTP "C4'" "O4'" sing N N 290 DTP "C4'" "C3'" sing N N 291 DTP "C4'" "H4'" sing N N 292 DTP "O4'" "C1'" sing N N 293 DTP "C3'" "O3'" sing N N 294 DTP "C3'" "C2'" sing N N 295 DTP "C3'" "H3'" sing N N 296 DTP "O3'" "HO3'" sing N N 297 DTP "C2'" "C1'" sing N N 298 DTP "C2'" "H2'1" sing N N 299 DTP "C2'" "H2'2" sing N N 300 DTP "C1'" N9 sing N N 301 DTP "C1'" "H1'" sing N N 302 DTP N9 C8 sing Y N 303 DTP N9 C4 sing Y N 304 DTP C8 N7 doub Y N 305 DTP C8 H8 sing N N 306 DTP N7 C5 sing Y N 307 DTP C5 C6 sing Y N 308 DTP C5 C4 doub Y N 309 DTP C6 N6 sing N N 310 DTP C6 N1 doub Y N 311 DTP N6 HN61 sing N N 312 DTP N6 HN62 sing N N 313 DTP N1 C2 sing Y N 314 DTP C2 N3 doub Y N 315 DTP C2 H2 sing N N 316 DTP N3 C4 sing Y N 317 GLN N CA sing N N 318 GLN N H sing N N 319 GLN N H2 sing N N 320 GLN CA C sing N N 321 GLN CA CB sing N N 322 GLN CA HA sing N N 323 GLN C O doub N N 324 GLN C OXT sing N N 325 GLN CB CG sing N N 326 GLN CB HB2 sing N N 327 GLN CB HB3 sing N N 328 GLN CG CD sing N N 329 GLN CG HG2 sing N N 330 GLN CG HG3 sing N N 331 GLN CD OE1 doub N N 332 GLN CD NE2 sing N N 333 GLN NE2 HE21 sing N N 334 GLN NE2 HE22 sing N N 335 GLN OXT HXT sing N N 336 GLU N CA sing N N 337 GLU N H sing N N 338 GLU N H2 sing N N 339 GLU CA C sing N N 340 GLU CA CB sing N N 341 GLU CA HA sing N N 342 GLU C O doub N N 343 GLU C OXT sing N N 344 GLU CB CG sing N N 345 GLU CB HB2 sing N N 346 GLU CB HB3 sing N N 347 GLU CG CD sing N N 348 GLU CG HG2 sing N N 349 GLU CG HG3 sing N N 350 GLU CD OE1 doub N N 351 GLU CD OE2 sing N N 352 GLU OE2 HE2 sing N N 353 GLU OXT HXT sing N N 354 GLY N CA sing N N 355 GLY N H sing N N 356 GLY N H2 sing N N 357 GLY CA C sing N N 358 GLY CA HA2 sing N N 359 GLY CA HA3 sing N N 360 GLY C O doub N N 361 GLY C OXT sing N N 362 GLY OXT HXT sing N N 363 HIS N CA sing N N 364 HIS N H sing N N 365 HIS N H2 sing N N 366 HIS CA C sing N N 367 HIS CA CB sing N N 368 HIS CA HA sing N N 369 HIS C O doub N N 370 HIS C OXT sing N N 371 HIS CB CG sing N N 372 HIS CB HB2 sing N N 373 HIS CB HB3 sing N N 374 HIS CG ND1 sing Y N 375 HIS CG CD2 doub Y N 376 HIS ND1 CE1 doub Y N 377 HIS ND1 HD1 sing N N 378 HIS CD2 NE2 sing Y N 379 HIS CD2 HD2 sing N N 380 HIS CE1 NE2 sing Y N 381 HIS CE1 HE1 sing N N 382 HIS NE2 HE2 sing N N 383 HIS OXT HXT sing N N 384 HOH O H1 sing N N 385 HOH O H2 sing N N 386 ILE N CA sing N N 387 ILE N H sing N N 388 ILE N H2 sing N N 389 ILE CA C sing N N 390 ILE CA CB sing N N 391 ILE CA HA sing N N 392 ILE C O doub N N 393 ILE C OXT sing N N 394 ILE CB CG1 sing N N 395 ILE CB CG2 sing N N 396 ILE CB HB sing N N 397 ILE CG1 CD1 sing N N 398 ILE CG1 HG12 sing N N 399 ILE CG1 HG13 sing N N 400 ILE CG2 HG21 sing N N 401 ILE CG2 HG22 sing N N 402 ILE CG2 HG23 sing N N 403 ILE CD1 HD11 sing N N 404 ILE CD1 HD12 sing N N 405 ILE CD1 HD13 sing N N 406 ILE OXT HXT sing N N 407 LEU N CA sing N N 408 LEU N H sing N N 409 LEU N H2 sing N N 410 LEU CA C sing N N 411 LEU CA CB sing N N 412 LEU CA HA sing N N 413 LEU C O doub N N 414 LEU C OXT sing N N 415 LEU CB CG sing N N 416 LEU CB HB2 sing N N 417 LEU CB HB3 sing N N 418 LEU CG CD1 sing N N 419 LEU CG CD2 sing N N 420 LEU CG HG sing N N 421 LEU CD1 HD11 sing N N 422 LEU CD1 HD12 sing N N 423 LEU CD1 HD13 sing N N 424 LEU CD2 HD21 sing N N 425 LEU CD2 HD22 sing N N 426 LEU CD2 HD23 sing N N 427 LEU OXT HXT sing N N 428 LYS N CA sing N N 429 LYS N H sing N N 430 LYS N H2 sing N N 431 LYS CA C sing N N 432 LYS CA CB sing N N 433 LYS CA HA sing N N 434 LYS C O doub N N 435 LYS C OXT sing N N 436 LYS CB CG sing N N 437 LYS CB HB2 sing N N 438 LYS CB HB3 sing N N 439 LYS CG CD sing N N 440 LYS CG HG2 sing N N 441 LYS CG HG3 sing N N 442 LYS CD CE sing N N 443 LYS CD HD2 sing N N 444 LYS CD HD3 sing N N 445 LYS CE NZ sing N N 446 LYS CE HE2 sing N N 447 LYS CE HE3 sing N N 448 LYS NZ HZ1 sing N N 449 LYS NZ HZ2 sing N N 450 LYS NZ HZ3 sing N N 451 LYS OXT HXT sing N N 452 MET N CA sing N N 453 MET N H sing N N 454 MET N H2 sing N N 455 MET CA C sing N N 456 MET CA CB sing N N 457 MET CA HA sing N N 458 MET C O doub N N 459 MET C OXT sing N N 460 MET CB CG sing N N 461 MET CB HB2 sing N N 462 MET CB HB3 sing N N 463 MET CG SD sing N N 464 MET CG HG2 sing N N 465 MET CG HG3 sing N N 466 MET SD CE sing N N 467 MET CE HE1 sing N N 468 MET CE HE2 sing N N 469 MET CE HE3 sing N N 470 MET OXT HXT sing N N 471 PHE N CA sing N N 472 PHE N H sing N N 473 PHE N H2 sing N N 474 PHE CA C sing N N 475 PHE CA CB sing N N 476 PHE CA HA sing N N 477 PHE C O doub N N 478 PHE C OXT sing N N 479 PHE CB CG sing N N 480 PHE CB HB2 sing N N 481 PHE CB HB3 sing N N 482 PHE CG CD1 doub Y N 483 PHE CG CD2 sing Y N 484 PHE CD1 CE1 sing Y N 485 PHE CD1 HD1 sing N N 486 PHE CD2 CE2 doub Y N 487 PHE CD2 HD2 sing N N 488 PHE CE1 CZ doub Y N 489 PHE CE1 HE1 sing N N 490 PHE CE2 CZ sing Y N 491 PHE CE2 HE2 sing N N 492 PHE CZ HZ sing N N 493 PHE OXT HXT sing N N 494 PRO N CA sing N N 495 PRO N CD sing N N 496 PRO N H sing N N 497 PRO CA C sing N N 498 PRO CA CB sing N N 499 PRO CA HA sing N N 500 PRO C O doub N N 501 PRO C OXT sing N N 502 PRO CB CG sing N N 503 PRO CB HB2 sing N N 504 PRO CB HB3 sing N N 505 PRO CG CD sing N N 506 PRO CG HG2 sing N N 507 PRO CG HG3 sing N N 508 PRO CD HD2 sing N N 509 PRO CD HD3 sing N N 510 PRO OXT HXT sing N N 511 SER N CA sing N N 512 SER N H sing N N 513 SER N H2 sing N N 514 SER CA C sing N N 515 SER CA CB sing N N 516 SER CA HA sing N N 517 SER C O doub N N 518 SER C OXT sing N N 519 SER CB OG sing N N 520 SER CB HB2 sing N N 521 SER CB HB3 sing N N 522 SER OG HG sing N N 523 SER OXT HXT sing N N 524 SO4 S O1 doub N N 525 SO4 S O2 doub N N 526 SO4 S O3 sing N N 527 SO4 S O4 sing N N 528 THR N CA sing N N 529 THR N H sing N N 530 THR N H2 sing N N 531 THR CA C sing N N 532 THR CA CB sing N N 533 THR CA HA sing N N 534 THR C O doub N N 535 THR C OXT sing N N 536 THR CB OG1 sing N N 537 THR CB CG2 sing N N 538 THR CB HB sing N N 539 THR OG1 HG1 sing N N 540 THR CG2 HG21 sing N N 541 THR CG2 HG22 sing N N 542 THR CG2 HG23 sing N N 543 THR OXT HXT sing N N 544 TRP N CA sing N N 545 TRP N H sing N N 546 TRP N H2 sing N N 547 TRP CA C sing N N 548 TRP CA CB sing N N 549 TRP CA HA sing N N 550 TRP C O doub N N 551 TRP C OXT sing N N 552 TRP CB CG sing N N 553 TRP CB HB2 sing N N 554 TRP CB HB3 sing N N 555 TRP CG CD1 doub Y N 556 TRP CG CD2 sing Y N 557 TRP CD1 NE1 sing Y N 558 TRP CD1 HD1 sing N N 559 TRP CD2 CE2 doub Y N 560 TRP CD2 CE3 sing Y N 561 TRP NE1 CE2 sing Y N 562 TRP NE1 HE1 sing N N 563 TRP CE2 CZ2 sing Y N 564 TRP CE3 CZ3 doub Y N 565 TRP CE3 HE3 sing N N 566 TRP CZ2 CH2 doub Y N 567 TRP CZ2 HZ2 sing N N 568 TRP CZ3 CH2 sing Y N 569 TRP CZ3 HZ3 sing N N 570 TRP CH2 HH2 sing N N 571 TRP OXT HXT sing N N 572 TTD P OP1 doub N N 573 TTD P OP2 sing N N 574 TTD P OP3 sing N N 575 TTD P "O5'" sing N N 576 TTD OP2 HOP2 sing N N 577 TTD OP3 HOP3 sing N N 578 TTD "O5'" "C5'" sing N N 579 TTD "C5'" C4R sing N N 580 TTD "C5'" "H5'" sing N N 581 TTD "C5'" "H5''" sing N N 582 TTD C4R "O4'" sing N N 583 TTD C4R C3R sing N N 584 TTD C4R H4R sing N N 585 TTD "O4'" "C1'" sing N N 586 TTD C3R O3R sing N N 587 TTD C3R "C2'" sing N N 588 TTD C3R H3R sing N N 589 TTD O3R PB sing N N 590 TTD "C2'" "C1'" sing N N 591 TTD "C2'" "H2'" sing N N 592 TTD "C2'" "H2''" sing N N 593 TTD "C1'" N1 sing N N 594 TTD "C1'" "H1'" sing N N 595 TTD N1 C2 sing N N 596 TTD N1 C6 sing N N 597 TTD C2 O2 doub N N 598 TTD C2 N3 sing N N 599 TTD N3 C4 sing N N 600 TTD N3 HN3 sing N N 601 TTD C4 O4 doub N N 602 TTD C4 C5 sing N N 603 TTD C5 C5A sing N N 604 TTD C5 C6 sing N N 605 TTD C5 C5T sing N N 606 TTD C5A H5A1 sing N N 607 TTD C5A H5A2 sing N N 608 TTD C5A H5A3 sing N N 609 TTD C6 C6T sing N N 610 TTD C6 H6 sing N N 611 TTD PB O5P doub N N 612 TTD PB O4P sing N N 613 TTD PB O5R sing N N 614 TTD O4P H4P sing N N 615 TTD O5R C5R sing N N 616 TTD C5R "C4'" sing N N 617 TTD C5R H5R1 sing N N 618 TTD C5R H5R2 sing N N 619 TTD O4R C1R sing N N 620 TTD O4R "C4'" sing N N 621 TTD C2R C1R sing N N 622 TTD C2R "C3'" sing N N 623 TTD C2R H2R1 sing N N 624 TTD C2R H2R2 sing N N 625 TTD C1R N1T sing N N 626 TTD C1R H1R sing N N 627 TTD N1T C2T sing N N 628 TTD N1T C6T sing N N 629 TTD C2T O2T doub N N 630 TTD C2T N3T sing N N 631 TTD N3T C4T sing N N 632 TTD N3T HT sing N N 633 TTD C4T O4T doub N N 634 TTD C4T C5T sing N N 635 TTD C5T C5M sing N N 636 TTD C5T C6T sing N N 637 TTD C5M H71 sing N N 638 TTD C5M H72 sing N N 639 TTD C5M H73 sing N N 640 TTD C6T H6T sing N N 641 TTD "C4'" "C3'" sing N N 642 TTD "C4'" "H4'" sing N N 643 TTD "C3'" "O3'" sing N N 644 TTD "C3'" H1 sing N N 645 TTD "O3'" "HO3'" sing N N 646 TYR N CA sing N N 647 TYR N H sing N N 648 TYR N H2 sing N N 649 TYR CA C sing N N 650 TYR CA CB sing N N 651 TYR CA HA sing N N 652 TYR C O doub N N 653 TYR C OXT sing N N 654 TYR CB CG sing N N 655 TYR CB HB2 sing N N 656 TYR CB HB3 sing N N 657 TYR CG CD1 doub Y N 658 TYR CG CD2 sing Y N 659 TYR CD1 CE1 sing Y N 660 TYR CD1 HD1 sing N N 661 TYR CD2 CE2 doub Y N 662 TYR CD2 HD2 sing N N 663 TYR CE1 CZ doub Y N 664 TYR CE1 HE1 sing N N 665 TYR CE2 CZ sing Y N 666 TYR CE2 HE2 sing N N 667 TYR CZ OH sing N N 668 TYR OH HH sing N N 669 TYR OXT HXT sing N N 670 VAL N CA sing N N 671 VAL N H sing N N 672 VAL N H2 sing N N 673 VAL CA C sing N N 674 VAL CA CB sing N N 675 VAL CA HA sing N N 676 VAL C O doub N N 677 VAL C OXT sing N N 678 VAL CB CG1 sing N N 679 VAL CB CG2 sing N N 680 VAL CB HB sing N N 681 VAL CG1 HG11 sing N N 682 VAL CG1 HG12 sing N N 683 VAL CG1 HG13 sing N N 684 VAL CG2 HG21 sing N N 685 VAL CG2 HG22 sing N N 686 VAL CG2 HG23 sing N N 687 VAL OXT HXT sing N N 688 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9YD2 'double helix' 9YD2 'a-form double helix' 9YD2 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 13 1_555 3.492 -0.745 -0.348 -4.983 -0.692 10.769 1 B_DC19:DG14_C B 19 ? C 14 ? ? ? 1 B DA 2 1_555 C DT 12 1_555 -0.880 -0.068 0.310 -6.088 -7.684 7.556 2 B_DA20:DT13_C B 20 ? C 13 ? 20 1 1 B DA 3 1_555 C DT 11 1_555 -0.088 0.082 0.262 -2.309 -7.722 -2.342 3 B_DA21:DT12_C B 21 ? C 12 ? 20 1 1 B DG 4 1_555 C DC 10 1_555 0.139 -0.299 -0.038 -0.682 -7.919 -5.916 4 B_DG22:DC11_C B 22 ? C 11 ? 19 1 1 B DG 5 1_555 C DC 9 1_555 0.262 0.080 -0.280 -6.717 -10.771 11.638 5 B_DG23:DC10_C B 23 ? C 10 ? 19 1 1 B DA 6 1_555 C DT 8 1_555 -0.047 -0.432 -0.537 -3.484 -15.118 -8.574 6 B_DA24:DT9_C B 24 ? C 9 ? 20 1 1 B DC 7 1_555 C DG 7 1_555 0.044 -0.231 -0.519 8.755 -4.736 -3.648 7 B_DC25:DG8_C B 25 ? C 8 ? 19 1 1 B DA 8 1_555 C DT 6 1_555 0.345 0.138 -0.036 4.779 -3.460 -0.346 8 B_DA26:DT7_C B 26 ? C 7 ? 20 1 1 B DG 9 1_555 C DC 5 1_555 -0.151 -0.086 0.781 13.124 -12.127 -1.634 9 B_DG27:DC6_C B 27 ? C 6 ? 19 1 1 B DT 10 1_555 C DA 4 1_555 0.268 -0.179 0.376 10.559 -10.454 2.898 10 B_DT28:DA5_C B 28 ? C 5 ? 20 1 1 B DDG 11 1_555 C DC 3 1_555 -0.188 -0.083 -0.141 8.911 -5.902 2.050 11 B_DDG29:DC4_C B 29 ? C 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 13 1_555 B DA 2 1_555 C DT 12 1_555 -1.347 0.440 3.629 -13.668 4.029 15.767 -0.943 -3.590 3.648 11.974 40.615 21.221 1 BB_DC19DA20:DT13DG14_CC B 19 ? C 14 ? B 20 ? C 13 ? 1 B DA 2 1_555 C DT 12 1_555 B DA 3 1_555 C DT 11 1_555 -1.183 -0.219 3.187 -2.972 -0.307 37.100 -0.302 1.463 3.271 -0.481 4.662 37.216 2 BB_DA20DA21:DT12DT13_CC B 20 ? C 13 ? B 21 ? C 12 ? 1 B DA 3 1_555 C DT 11 1_555 B DG 4 1_555 C DC 10 1_555 -0.789 -0.078 3.339 -1.100 -0.854 35.421 0.001 1.131 3.362 -1.402 1.806 35.448 3 BB_DA21DG22:DC11DT12_CC B 21 ? C 12 ? B 22 ? C 11 ? 1 B DG 4 1_555 C DC 10 1_555 B DG 5 1_555 C DC 9 1_555 0.371 -0.326 3.473 0.520 7.339 34.057 -1.720 -0.536 3.338 12.351 -0.876 34.819 4 BB_DG22DG23:DC10DC11_CC B 22 ? C 11 ? B 23 ? C 10 ? 1 B DG 5 1_555 C DC 9 1_555 B DA 6 1_555 C DT 8 1_555 -1.460 -0.073 3.261 0.585 1.304 30.395 -0.399 2.897 3.227 2.485 -1.115 30.428 5 BB_DG23DA24:DT9DC10_CC B 23 ? C 10 ? B 24 ? C 9 ? 1 B DA 6 1_555 C DT 8 1_555 B DC 7 1_555 C DG 7 1_555 1.212 -0.405 2.903 0.632 3.789 29.946 -1.458 -2.214 2.855 7.294 -1.218 30.185 6 BB_DA24DC25:DG8DT9_CC B 24 ? C 9 ? B 25 ? C 8 ? 1 B DC 7 1_555 C DG 7 1_555 B DA 8 1_555 C DT 6 1_555 0.668 -0.134 3.571 1.756 9.793 29.290 -2.328 -0.882 3.385 18.699 -3.353 30.899 7 BB_DC25DA26:DT7DG8_CC B 25 ? C 8 ? B 26 ? C 7 ? 1 B DA 8 1_555 C DT 6 1_555 B DG 9 1_555 C DC 5 1_555 0.053 -0.732 3.126 -10.756 6.667 39.047 -1.729 -1.179 2.857 9.670 15.602 40.970 8 BB_DA26DG27:DC6DT7_CC B 26 ? C 7 ? B 27 ? C 6 ? 1 B DG 9 1_555 C DC 5 1_555 B DT 10 1_555 C DA 4 1_555 -0.300 -1.752 3.603 4.360 9.842 27.788 -5.486 1.504 2.758 19.586 -8.677 29.762 9 BB_DG27DT28:DA5DC6_CC B 27 ? C 6 ? B 28 ? C 5 ? 1 B DT 10 1_555 C DA 4 1_555 B DDG 11 1_555 C DC 3 1_555 0.118 -1.347 3.355 2.341 7.768 29.730 -4.018 0.224 2.918 14.796 -4.459 30.793 10 BB_DT28DDG29:DC4DA5_CC B 28 ? C 5 ? B 29 ? C 4 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'R01 GM091487' 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' 'P01 CA092584' 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3HPO _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9YD2 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.010853 _atom_sites.fract_transf_matrix[1][2] 0.006266 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012532 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005272 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 MN 25 25 11.2854 5.3409 7.3596 0.3432 3.0202 17.8674 2.2448 83.7543 1.3734 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 P 15 15 6.4348 1.9067 4.1793 27.1570 1.7801 0.5260 1.4909 68.1645 1.2732 S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 1.0555 # loop_ #