HEADER IMMUNE SYSTEM 23-SEP-25 9YE2 TITLE CRYSTAL STRUCTURE OF THE GRAM-4 ANTIBODY FRAGMENT IN COMPLEX WITH NAGG TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRAM-4 FAB HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GRAM-4 FAB LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: GLY-ASN-ALA-GLY; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: 293-F; SOURCE 7 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: 293-F; SOURCE 15 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 20 ORGANISM_TAXID: 5855 KEYWDS PEPTIDE COMPLEX, IMMUNOGLOBULIN, FAB, CIRCUMSPOROZITE PROTEIN, KEYWDS 2 ANTIBODY COMPLEX, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS KEYWDS 3 CENTER FOR INFECTIOUS DISEASE, SSGCID, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.L.STAKER,G.R.VISWESWARAN,V.VIGDOROVICH,D.N.SATHER,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 07-OCT-26 9YE2 0 JRNL AUTH G.R.R.VISWESWARAN,P.MAHDAVI,K.VIJAYAN,F.B.NTUMNGIA, JRNL AUTH 2 B.L.STAKER,S.J.BARNES,P.A.SUBRAMANI,A.RAAPPANA, JRNL AUTH 3 N.DAMBRAUSKAS,E.K.K.GLENNON,S.K.KOLLI,M.M.OGBONDAH,A.WATSON, JRNL AUTH 4 N.CAMARGO,B.SANKARAN,P.THAWORNPAN,R.JENWITHISUK,P.J.MYLER, JRNL AUTH 5 S.H.I.KAPPE,W.ROOBSOONG,P.CHOOTONG,J.SATTABONGKOT, JRNL AUTH 6 A.KAUSHANSKY,V.VIGDOROVICH,J.H.ADAMS,D.N.SATHER JRNL TITL TARGETING A SITE OF VULNERABILITY ON CIRCUMSPOROZOITE JRNL TITL 2 PROTEIN INHIBITS PLASMODIUM VIVAX MALARIA INFECTION. JRNL REF IMMUNITY 2026 JRNL REFN ISSN 1074-7613 JRNL PMID 42785294 JRNL DOI 10.1016/J.IMMUNI.2026.09.001 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 2.0_5885 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7100 - 4.5300 1.00 2874 163 0.1988 0.2093 REMARK 3 2 4.5300 - 3.6000 1.00 2794 137 0.1799 0.2059 REMARK 3 3 3.6000 - 3.1400 1.00 2781 139 0.2274 0.3053 REMARK 3 4 3.1400 - 2.8500 1.00 2748 159 0.2684 0.2905 REMARK 3 5 2.8500 - 2.6500 1.00 2760 134 0.2927 0.3183 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.296 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3454 REMARK 3 ANGLE : 0.572 4710 REMARK 3 CHIRALITY : 0.044 528 REMARK 3 PLANARITY : 0.007 599 REMARK 3 DIHEDRAL : 5.435 473 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.7556 -4.1959 7.4700 REMARK 3 T TENSOR REMARK 3 T11: 0.2336 T22: 0.3852 REMARK 3 T33: 0.3822 T12: 0.0156 REMARK 3 T13: 0.0630 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: 3.7850 L22: 3.1204 REMARK 3 L33: 2.6550 L12: 1.1108 REMARK 3 L13: 0.3683 L23: 0.2485 REMARK 3 S TENSOR REMARK 3 S11: -0.0984 S12: 0.5999 S13: -0.4464 REMARK 3 S21: -0.2106 S22: 0.1520 S23: -0.2462 REMARK 3 S31: 0.0649 S32: 0.1853 S33: -0.0104 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7755 -3.1820 17.6131 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.2410 REMARK 3 T33: 0.3032 T12: 0.0071 REMARK 3 T13: 0.0502 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 6.8444 L22: 4.2540 REMARK 3 L33: 4.0677 L12: 3.9130 REMARK 3 L13: 3.4099 L23: 2.2943 REMARK 3 S TENSOR REMARK 3 S11: -0.0750 S12: -0.0091 S13: -0.5214 REMARK 3 S21: 0.2223 S22: 0.1766 S23: -0.1906 REMARK 3 S31: 0.4992 S32: -0.1110 S33: -0.1707 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3285 1.0995 51.7659 REMARK 3 T TENSOR REMARK 3 T11: 0.4061 T22: 0.4032 REMARK 3 T33: 0.5767 T12: -0.0291 REMARK 3 T13: 0.1760 T23: 0.0760 REMARK 3 L TENSOR REMARK 3 L11: 8.3585 L22: 7.6792 REMARK 3 L33: 4.1600 L12: 6.2073 REMARK 3 L13: -1.6838 L23: -3.3374 REMARK 3 S TENSOR REMARK 3 S11: 0.9619 S12: -1.1870 S13: 0.0282 REMARK 3 S21: 1.2942 S22: -0.4672 S23: 0.3578 REMARK 3 S31: -1.0981 S32: 0.0997 S33: -0.4594 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2258 -2.1063 40.2716 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.2318 REMARK 3 T33: 0.4293 T12: -0.0199 REMARK 3 T13: 0.0449 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.6811 L22: 1.7239 REMARK 3 L33: 4.5804 L12: -0.0450 REMARK 3 L13: 0.6868 L23: -0.9265 REMARK 3 S TENSOR REMARK 3 S11: -0.1126 S12: -0.0500 S13: 0.2082 REMARK 3 S21: -0.0352 S22: 0.0445 S23: -0.1638 REMARK 3 S31: -0.0421 S32: -0.0971 S33: 0.0654 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.5864 -6.3738 20.5741 REMARK 3 T TENSOR REMARK 3 T11: 0.2218 T22: 0.2665 REMARK 3 T33: 0.3285 T12: -0.0029 REMARK 3 T13: 0.0283 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 2.1534 L22: 1.8159 REMARK 3 L33: 4.8446 L12: 0.3632 REMARK 3 L13: 0.5191 L23: -2.1106 REMARK 3 S TENSOR REMARK 3 S11: 0.1223 S12: 0.2836 S13: -0.1286 REMARK 3 S21: 0.0255 S22: 0.1793 S23: -0.0312 REMARK 3 S31: -0.0288 S32: -0.3382 S33: -0.3122 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.2841 -8.7969 27.5324 REMARK 3 T TENSOR REMARK 3 T11: 0.2851 T22: 0.2285 REMARK 3 T33: 0.4057 T12: 0.0181 REMARK 3 T13: 0.0018 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.2445 L22: 0.4781 REMARK 3 L33: 1.3762 L12: 0.7777 REMARK 3 L13: 0.7216 L23: 0.6866 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: 0.0584 S13: -0.1937 REMARK 3 S21: 0.0507 S22: -0.0087 S23: -0.1380 REMARK 3 S31: 0.1005 S32: -0.0689 S33: -0.0656 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 154 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7909 8.2264 48.5463 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.2606 REMARK 3 T33: 0.2791 T12: 0.0824 REMARK 3 T13: -0.0099 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 5.6544 L22: 5.9821 REMARK 3 L33: 0.7136 L12: 4.7292 REMARK 3 L13: 0.2698 L23: 0.1908 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.0122 S13: 0.2691 REMARK 3 S21: 0.1914 S22: 0.0355 S23: 0.3051 REMARK 3 S31: -0.0511 S32: -0.1097 S33: -0.0050 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 8 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.8674 -12.4682 7.9061 REMARK 3 T TENSOR REMARK 3 T11: 0.4840 T22: 0.3773 REMARK 3 T33: 0.8156 T12: -0.0483 REMARK 3 T13: -0.0086 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.3168 L22: 1.5837 REMARK 3 L33: 6.1256 L12: 0.6767 REMARK 3 L13: -1.0980 L23: 1.0774 REMARK 3 S TENSOR REMARK 3 S11: -0.3925 S12: 0.3064 S13: -0.3401 REMARK 3 S21: -0.1861 S22: 0.1390 S23: 0.1666 REMARK 3 S31: 0.1454 S32: -0.0955 S33: 0.2113 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1000300344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : OTHER REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920194 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NSLSII AMX BEAMLINE BL17-ID REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14696 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.23200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.90300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER: 8 MG/ML IN 10 MM REMARK 280 HEPES, PH 7, 150 MM NACL, 2 MM EDTA. CRYSTALLIZATION: G5 REMARK 280 MORPHEUS. 0.1 M CARBOXYLIC ACIDS; 0.1 M BUFFER SYSTEM 2; 30% REMARK 280 PRECIPITANT MIX 1. 10% W/V PEG 20000, 20% V/V PEG MME 550, 0.1M REMARK 280 MOPS/HEPES-NA PH7.5, 0.02 M SODIUM FORMATE, 0.02M AMMONIUM REMARK 280 ACETATE, 0.02M TRISODIUM CITRATE, 0.02M SODIUM POTASSIUM L- REMARK 280 TARTRATE, 0.02M SODIUM OXAMATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.86500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.86500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 20 REMARK 465 SER A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 ASN C 5 REMARK 465 ALA C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 12 REMARK 465 ASN C 13 REMARK 465 ALA C 14 REMARK 465 GLY C 15 REMARK 465 GLY C 16 REMARK 465 ASN C 17 REMARK 465 ALA C 18 REMARK 465 GLY C 19 REMARK 465 GLY C 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLN A 151 CG CD OE1 NE2 REMARK 470 GLN B 181 CG CD OE1 NE2 REMARK 470 LYS B 194 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 61 -69.59 -90.96 REMARK 500 ARG A 71 -168.14 -108.03 REMARK 500 TRP A 120 -41.67 74.80 REMARK 500 SER A 148 91.60 -173.71 REMARK 500 THR A 152 36.67 -140.73 REMARK 500 SER A 180 -29.98 -151.60 REMARK 500 LEU A 194 -173.73 72.23 REMARK 500 VAL B 76 -54.69 82.60 REMARK 500 ASN B 163 85.04 55.89 REMARK 500 ASN B 215 -75.99 -119.84 REMARK 500 REMARK 500 REMARK: NULL DBREF 9YE2 A 20 243 PDB 9YE2 9YE2 20 243 DBREF 9YE2 B 21 239 PDB 9YE2 9YE2 21 239 DBREF 9YE2 C 5 20 PDB 9YE2 9YE2 5 20 SEQRES 1 A 224 GLU VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 224 PRO GLY GLY SER MET LYS LEU SER CYS VAL ALA SER GLY SEQRES 3 A 224 PHE THR PHE SER ASN TRP TRP MET ASN TRP VAL ARG GLN SEQRES 4 A 224 SER PRO GLU LYS GLY LEU GLU TRP ILE ALA GLU ILE ARG SEQRES 5 A 224 LEU LYS SER ASN ASN TYR ALA THR HIS TYR ALA GLU SER SEQRES 6 A 224 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 A 224 SER SER VAL TYR LEU GLN MET ASN ASN LEU ARG VAL GLU SEQRES 8 A 224 ASP THR GLY ILE TYR TYR CYS THR HIS TRP ASP TYR TRP SEQRES 9 A 224 GLY GLN GLY THR THR LEU THR VAL SER SER ALA LYS THR SEQRES 10 A 224 THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SER ALA SEQRES 11 A 224 ALA GLN THR ASN SER MET VAL THR LEU GLY CYS LEU VAL SEQRES 12 A 224 LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR TRP ASN SEQRES 13 A 224 SER GLY SER LEU SER SER GLY VAL HIS THR PHE PRO ALA SEQRES 14 A 224 VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SER VAL SEQRES 15 A 224 THR VAL PRO SER SER THR TRP PRO SER GLN THR VAL THR SEQRES 16 A 224 CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS VAL ASP SEQRES 17 A 224 LYS LYS ILE VAL PRO ARG GLY SER HIS HIS HIS HIS HIS SEQRES 18 A 224 HIS HIS HIS SEQRES 1 B 219 ASP ILE VAL MET THR GLN SER PRO LEU THR LEU SER VAL SEQRES 2 B 219 THR ILE GLY GLN PRO ALA SER ILE SER CYS LYS SER SER SEQRES 3 B 219 GLN SER LEU LEU ASP SER ASP GLY LYS THR TYR LEU ASN SEQRES 4 B 219 TRP LEU LEU GLN ARG PRO GLY GLN SER PRO LYS ARG LEU SEQRES 5 B 219 ILE TYR LEU VAL SER LYS LEU ASP SER THR VAL PRO ASP SEQRES 6 B 219 ARG PHE THR GLY SER GLY SER GLY THR ASP PHE SER LEU SEQRES 7 B 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 B 219 TYR CYS TRP GLN GLY THR HIS PHE PRO ARG THR PHE GLY SEQRES 9 B 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 B 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 B 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 B 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 B 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 B 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 B 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 B 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 B 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 C 16 ASN ALA GLY GLY ASN ALA GLY GLY ASN ALA GLY GLY ASN SEQRES 2 C 16 ALA GLY GLY HET GOL B 301 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *104(H2 O) HELIX 1 AA1 THR A 47 TRP A 51 5 5 HELIX 2 AA2 LEU A 72 ASN A 76 5 5 HELIX 3 AA3 ARG A 108 THR A 112 5 5 HELIX 4 AA4 SER A 176 SER A 178 5 3 HELIX 5 AA5 SER A 206 TRP A 208 5 3 HELIX 6 AA6 GLU B 104 LEU B 108 5 5 HELIX 7 AA7 SER B 146 GLY B 153 1 8 HELIX 8 AA8 LYS B 208 HIS B 214 1 7 SHEET 1 AA1 4 GLN A 22 SER A 26 0 SHEET 2 AA1 4 SER A 36 SER A 44 -1 O VAL A 42 N GLN A 24 SHEET 3 AA1 4 SER A 99 ASN A 105 -1 O MET A 104 N MET A 37 SHEET 4 AA1 4 PHE A 89 ASP A 94 -1 N ASP A 94 O SER A 99 SHEET 1 AA2 6 LEU A 30 VAL A 31 0 SHEET 2 AA2 6 THR A 127 VAL A 131 1 O THR A 130 N VAL A 31 SHEET 3 AA2 6 GLY A 113 THR A 118 -1 N TYR A 115 O THR A 127 SHEET 4 AA2 6 MET A 53 SER A 59 -1 N VAL A 56 O TYR A 116 SHEET 5 AA2 6 GLY A 63 ILE A 70 -1 O GLU A 65 N ARG A 57 SHEET 6 AA2 6 THR A 79 TYR A 81 -1 O HIS A 80 N GLU A 69 SHEET 1 AA3 4 SER A 140 LEU A 144 0 SHEET 2 AA3 4 MET A 155 TYR A 165 -1 O GLY A 159 N LEU A 144 SHEET 3 AA3 4 TYR A 195 PRO A 204 -1 O VAL A 203 N VAL A 156 SHEET 4 AA3 4 VAL A 183 THR A 185 -1 N HIS A 184 O SER A 200 SHEET 1 AA4 3 THR A 171 TRP A 174 0 SHEET 2 AA4 3 THR A 214 HIS A 219 -1 O ASN A 216 N THR A 173 SHEET 3 AA4 3 THR A 224 LYS A 229 -1 O THR A 224 N HIS A 219 SHEET 1 AA5 4 MET B 24 SER B 27 0 SHEET 2 AA5 4 ALA B 39 SER B 45 -1 O LYS B 44 N THR B 25 SHEET 3 AA5 4 ASP B 95 ILE B 100 -1 O PHE B 96 N CYS B 43 SHEET 4 AA5 4 PHE B 87 SER B 92 -1 N SER B 90 O SER B 97 SHEET 1 AA6 6 THR B 30 VAL B 33 0 SHEET 2 AA6 6 THR B 127 ILE B 131 1 O LYS B 128 N LEU B 31 SHEET 3 AA6 6 GLY B 109 GLN B 115 -1 N GLY B 109 O LEU B 129 SHEET 4 AA6 6 LEU B 58 GLN B 63 -1 N GLN B 63 O VAL B 110 SHEET 5 AA6 6 LYS B 70 TYR B 74 -1 O LEU B 72 N TRP B 60 SHEET 6 AA6 6 LYS B 78 LEU B 79 -1 O LYS B 78 N TYR B 74 SHEET 1 AA7 4 THR B 30 VAL B 33 0 SHEET 2 AA7 4 THR B 127 ILE B 131 1 O LYS B 128 N LEU B 31 SHEET 3 AA7 4 GLY B 109 GLN B 115 -1 N GLY B 109 O LEU B 129 SHEET 4 AA7 4 THR B 122 PHE B 123 -1 O THR B 122 N GLN B 115 SHEET 1 AA8 4 THR B 139 PHE B 143 0 SHEET 2 AA8 4 GLY B 154 PHE B 164 -1 O ASN B 162 N THR B 139 SHEET 3 AA8 4 TYR B 198 THR B 207 -1 O LEU B 206 N ALA B 155 SHEET 4 AA8 4 VAL B 184 TRP B 188 -1 N LEU B 185 O THR B 203 SHEET 1 AA9 4 SER B 178 ARG B 180 0 SHEET 2 AA9 4 ASN B 170 ILE B 175 -1 N ILE B 175 O SER B 178 SHEET 3 AA9 4 SER B 216 HIS B 223 -1 O GLU B 220 N LYS B 172 SHEET 4 AA9 4 SER B 226 ASN B 235 -1 O ILE B 230 N ALA B 221 SSBOND 1 CYS A 41 CYS A 117 1555 1555 2.03 SSBOND 2 CYS A 160 CYS A 215 1555 1555 2.03 SSBOND 3 CYS B 43 CYS B 113 1555 1555 2.04 SSBOND 4 CYS B 159 CYS B 219 1555 1555 2.04 CISPEP 1 PHE A 166 PRO A 167 0 -9.52 CISPEP 2 GLU A 168 PRO A 169 0 3.74 CISPEP 3 TRP A 208 PRO A 209 0 2.77 CISPEP 4 SER B 27 PRO B 28 0 -8.73 CISPEP 5 PHE B 119 PRO B 120 0 5.88 CISPEP 6 TYR B 165 PRO B 166 0 -1.14 CRYST1 177.730 40.000 71.410 90.00 101.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005627 0.000000 0.001093 0.00000 SCALE2 0.000000 0.025000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014266 0.00000 CONECT 298 1511 CONECT 1511 298 CONECT 2113 2924 CONECT 2924 2113 CONECT 3546 4652 CONECT 4652 3546 CONECT 5318 6248 CONECT 6248 5318 CONECT 6601 6602 6603 6607 6608 CONECT 6602 6601 6609 CONECT 6603 6601 6604 6605 6610 CONECT 6604 6603 6611 CONECT 6605 6603 6606 6612 6613 CONECT 6606 6605 6614 CONECT 6607 6601 CONECT 6608 6601 CONECT 6609 6602 CONECT 6610 6603 CONECT 6611 6604 CONECT 6612 6605 CONECT 6613 6605 CONECT 6614 6606 MASTER 388 0 1 8 39 0 0 6 3455 3 22 37 END