HEADER DNA BINDING PROTEIN 30-OCT-25 9YZD TITLE ISORETICULAR CO-CRYSTAL 1 WITH ASYMMETRICAL EXPANDED DUPLEX (31MER) TITLE 2 CONTAINING INSERT SEQUENCE CTAATTAGGC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 13 PROTEIN REPE54; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: REPLICATION INITIATOR PROTEIN REPE54 WITH N-TERMINAL COMPND 16 SOLUBILITY TAG AND N-TERMINAL 6XHIS TAG SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR E.T.SHIELDS,C.K.SLAUGHTER,E.N.MAGNA,C.D.SNOW REVDAT 1 18-FEB-26 9YZD 0 JRNL AUTH E.T.SHIELDS,C.K.SLAUGHTER,F.MEKKAOUI,E.N.MAGNA,C.SHEPHERD, JRNL AUTH 2 P.S.LUKEMAN,D.E.SPRATT,C.D.SNOW JRNL TITL MODULAR SCAFFOLD CRYSTALS FOR PROGRAMMABLE INSTALLATION AND JRNL TITL 2 STRUCTURAL OBSERVATION OF DNA-BINDING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR D STRUCT 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 23116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2900 - 7.7800 0.95 1308 142 0.1579 0.1720 REMARK 3 2 7.7700 - 6.1800 0.96 1297 149 0.2372 0.2259 REMARK 3 3 6.1800 - 5.4000 0.97 1300 147 0.2353 0.2638 REMARK 3 4 5.4000 - 4.9000 0.98 1346 135 0.2580 0.2826 REMARK 3 5 4.9000 - 4.5500 0.99 1320 144 0.2443 0.3007 REMARK 3 6 4.5500 - 4.2800 0.98 1316 150 0.2646 0.2391 REMARK 3 7 4.2800 - 4.0700 0.99 1336 144 0.2546 0.2839 REMARK 3 8 4.0700 - 3.8900 0.99 1328 152 0.2729 0.3020 REMARK 3 9 3.8900 - 3.7400 0.99 1308 141 0.3049 0.2972 REMARK 3 10 3.7400 - 3.6100 0.98 1313 152 0.3251 0.3366 REMARK 3 11 3.6100 - 3.5000 0.98 1331 127 0.3511 0.3981 REMARK 3 12 3.5000 - 3.4000 0.97 1288 155 0.3961 0.3757 REMARK 3 13 3.4000 - 3.3100 0.96 1279 134 0.3909 0.3993 REMARK 3 14 3.3100 - 3.2300 0.93 1243 138 0.4049 0.4323 REMARK 3 15 3.2300 - 3.1600 0.95 1289 139 0.4154 0.3639 REMARK 3 16 3.1600 - 3.0900 0.92 1236 129 0.4228 0.4521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.533 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.581 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 92.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 163.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3237 REMARK 3 ANGLE : 0.784 4614 REMARK 3 CHIRALITY : 0.082 512 REMARK 3 PLANARITY : 0.006 378 REMARK 3 DIHEDRAL : 26.858 1356 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7074 -29.8106 -0.0085 REMARK 3 T TENSOR REMARK 3 T11: 2.3135 T22: 1.5970 REMARK 3 T33: 1.7240 T12: 0.0868 REMARK 3 T13: -0.9578 T23: 0.6278 REMARK 3 L TENSOR REMARK 3 L11: 3.6748 L22: 3.9754 REMARK 3 L33: 0.8136 L12: -2.7980 REMARK 3 L13: 1.0220 L23: -1.7649 REMARK 3 S TENSOR REMARK 3 S11: 0.1317 S12: -0.5573 S13: -0.5896 REMARK 3 S21: -0.1544 S22: 0.1255 S23: 0.1138 REMARK 3 S31: 0.8002 S32: -0.0088 S33: -0.0575 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8881 -29.4732 -12.6879 REMARK 3 T TENSOR REMARK 3 T11: 2.7187 T22: 1.4070 REMARK 3 T33: 2.1644 T12: 0.0338 REMARK 3 T13: -1.2375 T23: 0.3275 REMARK 3 L TENSOR REMARK 3 L11: 4.9481 L22: 2.1287 REMARK 3 L33: 0.7628 L12: 0.4067 REMARK 3 L13: 1.7602 L23: -0.3871 REMARK 3 S TENSOR REMARK 3 S11: -0.5380 S12: 0.4812 S13: 1.0809 REMARK 3 S21: -1.0503 S22: 0.1268 S23: 1.5018 REMARK 3 S31: -0.8212 S32: -0.9273 S33: 0.0534 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.1328 2.5816 -39.2277 REMARK 3 T TENSOR REMARK 3 T11: 2.6928 T22: 2.1282 REMARK 3 T33: 2.2921 T12: 0.1582 REMARK 3 T13: -1.3834 T23: 1.6180 REMARK 3 L TENSOR REMARK 3 L11: 0.2345 L22: 0.4918 REMARK 3 L33: 1.3175 L12: -0.1415 REMARK 3 L13: 0.7561 L23: -0.8922 REMARK 3 S TENSOR REMARK 3 S11: 0.9100 S12: 0.6196 S13: 0.4798 REMARK 3 S21: -0.3182 S22: -0.2351 S23: 0.7676 REMARK 3 S31: -0.4419 S32: 0.3063 S33: 1.0828 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.3240 18.7609 -52.8365 REMARK 3 T TENSOR REMARK 3 T11: 2.6545 T22: 2.4599 REMARK 3 T33: 2.7753 T12: 0.1061 REMARK 3 T13: -1.0566 T23: 1.2463 REMARK 3 L TENSOR REMARK 3 L11: 4.2884 L22: 6.9641 REMARK 3 L33: 4.6363 L12: -4.4419 REMARK 3 L13: 1.3868 L23: -1.9401 REMARK 3 S TENSOR REMARK 3 S11: -0.0906 S12: 0.2194 S13: -0.4765 REMARK 3 S21: 0.4133 S22: 0.4884 S23: 1.2926 REMARK 3 S31: 0.7472 S32: 0.5825 S33: -0.7129 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2141 -17.4113 -20.4332 REMARK 3 T TENSOR REMARK 3 T11: 2.1721 T22: 1.4279 REMARK 3 T33: 1.9779 T12: -0.1522 REMARK 3 T13: -0.9666 T23: 0.5334 REMARK 3 L TENSOR REMARK 3 L11: 4.0310 L22: 3.5205 REMARK 3 L33: 4.6916 L12: -1.0559 REMARK 3 L13: 0.1265 L23: -1.7646 REMARK 3 S TENSOR REMARK 3 S11: 0.7674 S12: 1.0273 S13: -0.6590 REMARK 3 S21: -1.4634 S22: 0.2071 S23: 0.7010 REMARK 3 S31: 1.3770 S32: -0.4691 S33: -0.6442 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5369 2.1147 -14.9338 REMARK 3 T TENSOR REMARK 3 T11: 1.5403 T22: 0.6228 REMARK 3 T33: 2.0155 T12: -0.0567 REMARK 3 T13: -1.0315 T23: 0.9891 REMARK 3 L TENSOR REMARK 3 L11: 1.2356 L22: 5.3366 REMARK 3 L33: 2.1717 L12: -2.3476 REMARK 3 L13: -0.0918 L23: -1.2367 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: 0.5013 S13: 1.2975 REMARK 3 S21: -0.4510 S22: 0.2399 S23: -0.9606 REMARK 3 S31: -1.0338 S32: 0.3908 S33: 1.7061 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2227 -0.9311 3.0088 REMARK 3 T TENSOR REMARK 3 T11: 1.3354 T22: 1.2288 REMARK 3 T33: 1.5770 T12: -0.2148 REMARK 3 T13: -0.4282 T23: 0.2524 REMARK 3 L TENSOR REMARK 3 L11: 6.0807 L22: 5.5041 REMARK 3 L33: 5.4146 L12: -5.7687 REMARK 3 L13: 5.7458 L23: -5.4453 REMARK 3 S TENSOR REMARK 3 S11: -0.9794 S12: -0.1151 S13: 1.0429 REMARK 3 S21: 1.5073 S22: 1.0754 S23: -0.1252 REMARK 3 S31: -1.5999 S32: 0.2959 S33: -0.0013 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 114 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3303 4.7028 -10.6325 REMARK 3 T TENSOR REMARK 3 T11: 1.2148 T22: 0.9495 REMARK 3 T33: 1.9752 T12: -0.1832 REMARK 3 T13: -0.4451 T23: 0.3528 REMARK 3 L TENSOR REMARK 3 L11: 5.4209 L22: 2.9272 REMARK 3 L33: 7.6321 L12: -3.3434 REMARK 3 L13: -0.7445 L23: -1.9759 REMARK 3 S TENSOR REMARK 3 S11: 0.3188 S12: -0.5427 S13: 2.3243 REMARK 3 S21: -0.3634 S22: 0.1166 S23: 0.3635 REMARK 3 S31: -1.4184 S32: -0.3710 S33: -0.1723 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 160 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9478 -3.3663 -8.2813 REMARK 3 T TENSOR REMARK 3 T11: 1.3495 T22: 1.1695 REMARK 3 T33: 2.0232 T12: -0.3093 REMARK 3 T13: -0.6742 T23: 0.6044 REMARK 3 L TENSOR REMARK 3 L11: 7.6551 L22: 5.0722 REMARK 3 L33: 6.3881 L12: 2.8129 REMARK 3 L13: -2.5453 L23: 3.1594 REMARK 3 S TENSOR REMARK 3 S11: -0.0842 S12: -0.1493 S13: 1.7396 REMARK 3 S21: -0.4479 S22: -0.0262 S23: -1.2146 REMARK 3 S31: -0.6360 S32: 1.3879 S33: 0.4254 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 179 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1352 -9.8565 2.0243 REMARK 3 T TENSOR REMARK 3 T11: 1.0182 T22: 1.3847 REMARK 3 T33: 1.0469 T12: -0.0831 REMARK 3 T13: -0.4864 T23: 0.3011 REMARK 3 L TENSOR REMARK 3 L11: 2.0019 L22: 4.4812 REMARK 3 L33: 0.9346 L12: 1.8104 REMARK 3 L13: -0.2147 L23: 1.9165 REMARK 3 S TENSOR REMARK 3 S11: -0.2169 S12: -1.4361 S13: 0.9139 REMARK 3 S21: 0.8542 S22: 0.0836 S23: -0.0118 REMARK 3 S31: 0.2188 S32: 1.3188 S33: 0.1664 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 193 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2938 -20.1952 -2.9869 REMARK 3 T TENSOR REMARK 3 T11: 1.6465 T22: 0.9073 REMARK 3 T33: 1.4194 T12: 0.0008 REMARK 3 T13: -1.1078 T23: 0.8012 REMARK 3 L TENSOR REMARK 3 L11: 0.8988 L22: 0.2616 REMARK 3 L33: 1.8497 L12: -0.3854 REMARK 3 L13: 0.2100 L23: -0.3844 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: -0.1608 S13: -0.1035 REMARK 3 S21: 0.1175 S22: 0.0651 S23: 0.0647 REMARK 3 S31: 0.2339 S32: 0.1181 S33: 0.0142 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7376 -13.1796 -7.7030 REMARK 3 T TENSOR REMARK 3 T11: 1.2238 T22: 1.2801 REMARK 3 T33: 1.1403 T12: -0.0533 REMARK 3 T13: -0.4946 T23: 0.1961 REMARK 3 L TENSOR REMARK 3 L11: 5.9668 L22: 4.6285 REMARK 3 L33: 5.1659 L12: -0.2883 REMARK 3 L13: -2.4952 L23: -4.0763 REMARK 3 S TENSOR REMARK 3 S11: 0.6198 S12: -0.4993 S13: -0.4418 REMARK 3 S21: -0.4492 S22: 0.1173 S23: -0.1508 REMARK 3 S31: 1.4117 S32: 1.1569 S33: -0.4171 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1000298286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23118 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.090 REMARK 200 RESOLUTION RANGE LOW (A) : 45.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.91300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PARALLELEPIPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM MAGNESIUM ACETATE, 1.3 M LITHIUM REMARK 280 SULFATE, 50 MM MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.77568 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.42750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.51041 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.77568 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.42750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 69.51041 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASN C 14 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 HIS C 56 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 69 CG CD OE1 OE2 REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 TYR C 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 LEU C 142 CG CD1 CD2 REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 97 -165.21 -119.14 REMARK 500 ARG C 145 75.68 -114.37 REMARK 500 PHE C 208 -67.08 -106.47 REMARK 500 THR C 246 0.08 -66.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 93.2 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9YZA RELATED DB: PDB REMARK 900 RELATED ID: 9YZB RELATED DB: PDB REMARK 900 RELATED ID: 9YZC RELATED DB: PDB DBREF 9YZD A 1 31 PDB 9YZD 9YZD 1 31 DBREF 9YZD B 12 42 PDB 9YZD 9YZD 12 42 DBREF 9YZD C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 9YZD MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 9YZD ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 9YZD GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 9YZD SER C -8 UNP P03856 EXPRESSION TAG SEQADV 9YZD HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 9YZD HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 9YZD HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 9YZD HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 9YZD HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 9YZD HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 9YZD GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 9YZD SER C 0 UNP P03856 EXPRESSION TAG SEQADV 9YZD PRO C 118 UNP P03856 ARG 118 CONFLICT SEQRES 1 A 31 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 31 DG DC DC DC DT DC DA DG DC DT DA DA DT SEQRES 3 A 31 DT DA DG DG DC SEQRES 1 B 31 DG DG DC DC DT DA DA DT DT DA DG DC DT SEQRES 2 B 31 DG DA DG DG DG DC DA DA DT DT DT DG DT SEQRES 3 B 31 DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 GLY C 141 1 7 HELIX 7 AA7 LEU C 151 LYS C 155 1 5 HELIX 8 AA8 ASN C 159 TYR C 172 1 14 HELIX 9 AA9 ILE C 185 GLN C 193 1 9 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O ILE C 238 N LEU C 183 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N ILE C 227 O VAL C 239 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.05 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.47 CRYST1 76.032 124.855 139.093 90.00 91.85 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013152 0.000000 0.000424 0.00000 SCALE2 0.000000 0.008009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007193 0.00000 CONECT 1722 3043 CONECT 1749 3043 CONECT 3043 1722 1749 MASTER 511 0 1 12 10 0 0 6 3020 3 3 27 END