HEADER DNA BINDING PROTEIN 30-OCT-25 9YZF TITLE ISORETICULAR CO-CRYSTAL 1 WITH ASYMMETRICAL EXPANDED DUPLEX (31MER) TITLE 2 CONTAINING INSERT SEQUENCE AATTAGGCCG COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 13 PROTEIN REPE54; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: REPLICATION INITIATOR PROTEIN REPE54 WITH N-TERMINAL COMPND 16 SOLUBILITY TAG AND N-TERMINAL 6XHIS TAG SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR E.T.SHIELDS,C.K.SLAUGHTER,E.N.MAGNA,C.D.SNOW REVDAT 1 18-FEB-26 9YZF 0 JRNL AUTH E.T.SHIELDS,C.K.SLAUGHTER,F.MEKKAOUI,E.N.MAGNA,C.SHEPHERD, JRNL AUTH 2 P.S.LUKEMAN,D.E.SPRATT,C.D.SNOW JRNL TITL MODULAR SCAFFOLD CRYSTALS FOR PROGRAMMABLE INSTALLATION AND JRNL TITL 2 STRUCTURAL OBSERVATION OF DNA-BINDING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR D STRUCT 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 23302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2200 - 7.8800 0.94 1224 135 0.1537 0.1732 REMARK 3 2 7.8800 - 6.2600 0.98 1242 143 0.2083 0.2238 REMARK 3 3 6.2600 - 5.4700 0.98 1232 140 0.2173 0.2161 REMARK 3 4 5.4700 - 4.9700 0.99 1252 131 0.2197 0.2063 REMARK 3 5 4.9700 - 4.6200 0.99 1256 143 0.2180 0.2477 REMARK 3 6 4.6200 - 4.3400 0.98 1239 142 0.2165 0.2356 REMARK 3 7 4.3400 - 4.1300 0.95 1186 127 0.2223 0.2033 REMARK 3 8 4.1300 - 3.9500 0.99 1248 135 0.2357 0.2453 REMARK 3 9 3.9500 - 3.8000 0.99 1228 150 0.2510 0.2449 REMARK 3 10 3.7900 - 3.6600 0.99 1256 140 0.2774 0.2976 REMARK 3 11 3.6600 - 3.5500 0.99 1238 135 0.3025 0.2535 REMARK 3 12 3.5500 - 3.4500 0.98 1252 129 0.3402 0.3359 REMARK 3 13 3.4500 - 3.3600 0.97 1214 131 0.3633 0.3826 REMARK 3 14 3.3600 - 3.2800 0.98 1216 139 0.3636 0.3946 REMARK 3 15 3.2800 - 3.2000 0.97 1240 127 0.3647 0.4041 REMARK 3 16 3.2000 - 3.1300 0.97 1198 129 0.4079 0.4348 REMARK 3 17 3.1300 - 3.0700 0.99 1267 138 0.5056 0.5519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.533 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.891 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 152.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3273 REMARK 3 ANGLE : 0.667 4650 REMARK 3 CHIRALITY : 0.063 516 REMARK 3 PLANARITY : 0.006 385 REMARK 3 DIHEDRAL : 24.891 1374 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4835 -26.8830 71.4401 REMARK 3 T TENSOR REMARK 3 T11: 2.2196 T22: 1.4768 REMARK 3 T33: 1.6558 T12: 0.0186 REMARK 3 T13: -0.2348 T23: 0.5306 REMARK 3 L TENSOR REMARK 3 L11: 2.9050 L22: 2.7860 REMARK 3 L33: 3.3076 L12: 0.3675 REMARK 3 L13: 0.6441 L23: -1.1473 REMARK 3 S TENSOR REMARK 3 S11: -1.0196 S12: -1.3497 S13: -1.9500 REMARK 3 S21: -1.0883 S22: -0.0747 S23: 0.4287 REMARK 3 S31: 1.2254 S32: -0.2946 S33: -0.1216 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3805 -26.8919 59.1161 REMARK 3 T TENSOR REMARK 3 T11: 2.4340 T22: 1.6598 REMARK 3 T33: 1.8697 T12: -0.1580 REMARK 3 T13: -0.4797 T23: 0.2809 REMARK 3 L TENSOR REMARK 3 L11: 1.7791 L22: 3.9629 REMARK 3 L33: 2.4352 L12: -0.8371 REMARK 3 L13: -0.1042 L23: -1.1296 REMARK 3 S TENSOR REMARK 3 S11: -0.4595 S12: 1.9219 S13: -1.2309 REMARK 3 S21: 0.2232 S22: 0.9191 S23: 1.7276 REMARK 3 S31: 0.9299 S32: 0.3999 S33: -0.4239 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1980 -1.1337 39.4791 REMARK 3 T TENSOR REMARK 3 T11: 1.8523 T22: 1.9317 REMARK 3 T33: 1.5461 T12: -0.1927 REMARK 3 T13: -0.2889 T23: 0.6887 REMARK 3 L TENSOR REMARK 3 L11: 4.9151 L22: 5.4826 REMARK 3 L33: 3.5848 L12: -2.8182 REMARK 3 L13: 1.8511 L23: -2.3225 REMARK 3 S TENSOR REMARK 3 S11: 1.1429 S12: 1.0289 S13: -0.2719 REMARK 3 S21: -1.1644 S22: -0.6492 S23: 0.9317 REMARK 3 S31: 0.2969 S32: 0.1084 S33: -0.3711 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5383 20.1035 14.7663 REMARK 3 T TENSOR REMARK 3 T11: 3.0714 T22: 2.4586 REMARK 3 T33: 2.6675 T12: -0.0506 REMARK 3 T13: -0.4911 T23: 1.3088 REMARK 3 L TENSOR REMARK 3 L11: 5.7279 L22: 4.7739 REMARK 3 L33: 4.8264 L12: -4.9061 REMARK 3 L13: 5.0706 L23: -4.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.1610 S12: 1.2395 S13: -1.5434 REMARK 3 S21: 0.1952 S22: -0.0193 S23: 2.8190 REMARK 3 S31: 1.3677 S32: 2.0573 S33: -0.2761 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9329 20.7293 17.1658 REMARK 3 T TENSOR REMARK 3 T11: 2.4623 T22: 2.4581 REMARK 3 T33: 2.3385 T12: 0.0444 REMARK 3 T13: -0.3909 T23: 1.1139 REMARK 3 L TENSOR REMARK 3 L11: 1.3438 L22: 8.0585 REMARK 3 L33: 9.8777 L12: 1.4759 REMARK 3 L13: -0.3674 L23: -7.8513 REMARK 3 S TENSOR REMARK 3 S11: 0.7419 S12: 0.7596 S13: -0.4577 REMARK 3 S21: 1.6272 S22: -0.1135 S23: 0.2885 REMARK 3 S31: -1.1770 S32: -0.6153 S33: -0.6568 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2507 -14.4970 51.7198 REMARK 3 T TENSOR REMARK 3 T11: 1.7119 T22: 1.2961 REMARK 3 T33: 1.4984 T12: -0.2391 REMARK 3 T13: -0.2522 T23: 0.4122 REMARK 3 L TENSOR REMARK 3 L11: 5.1081 L22: 2.1933 REMARK 3 L33: 2.7020 L12: 0.6242 REMARK 3 L13: 0.1629 L23: 0.6317 REMARK 3 S TENSOR REMARK 3 S11: 0.5451 S12: 0.3599 S13: -0.7486 REMARK 3 S21: -0.9334 S22: 0.5282 S23: 0.6274 REMARK 3 S31: 1.1187 S32: -0.6822 S33: -1.0772 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 13 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3496 5.7663 63.4861 REMARK 3 T TENSOR REMARK 3 T11: 0.2860 T22: 0.8800 REMARK 3 T33: 1.5496 T12: -0.7845 REMARK 3 T13: 0.8079 T23: 0.6166 REMARK 3 L TENSOR REMARK 3 L11: 1.6742 L22: 2.4973 REMARK 3 L33: 3.0233 L12: -0.7682 REMARK 3 L13: 1.7337 L23: 0.8917 REMARK 3 S TENSOR REMARK 3 S11: -0.2850 S12: 1.1875 S13: 1.3502 REMARK 3 S21: -0.9624 S22: 0.4611 S23: -1.6732 REMARK 3 S31: -0.2884 S32: 1.4183 S33: -0.3047 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 33 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3891 7.2459 58.4704 REMARK 3 T TENSOR REMARK 3 T11: 0.8173 T22: 1.3167 REMARK 3 T33: 1.7340 T12: -0.4410 REMARK 3 T13: 0.2526 T23: 0.6160 REMARK 3 L TENSOR REMARK 3 L11: 3.9288 L22: 5.3794 REMARK 3 L33: 6.2054 L12: -1.6023 REMARK 3 L13: 0.7763 L23: -0.1674 REMARK 3 S TENSOR REMARK 3 S11: -0.2112 S12: 0.0690 S13: 3.0457 REMARK 3 S21: -1.9231 S22: 0.9900 S23: -0.4549 REMARK 3 S31: -1.5320 S32: 1.4353 S33: -0.5888 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2740 9.9022 52.2721 REMARK 3 T TENSOR REMARK 3 T11: 1.2902 T22: 1.5537 REMARK 3 T33: 1.8439 T12: -0.2366 REMARK 3 T13: -0.2018 T23: 0.8666 REMARK 3 L TENSOR REMARK 3 L11: 3.9475 L22: 5.1209 REMARK 3 L33: 5.0903 L12: -2.3775 REMARK 3 L13: -0.1805 L23: 0.8087 REMARK 3 S TENSOR REMARK 3 S11: -0.3756 S12: 1.1188 S13: 1.1795 REMARK 3 S21: -1.9092 S22: 1.6976 S23: 0.9696 REMARK 3 S31: 0.2913 S32: -0.4108 S33: -0.4226 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 75 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3186 -0.3984 52.3327 REMARK 3 T TENSOR REMARK 3 T11: 1.3393 T22: 1.3837 REMARK 3 T33: 1.4607 T12: -0.5887 REMARK 3 T13: -0.2882 T23: 0.8893 REMARK 3 L TENSOR REMARK 3 L11: 1.8777 L22: 3.0185 REMARK 3 L33: 3.4545 L12: 0.3015 REMARK 3 L13: -0.4604 L23: -0.8114 REMARK 3 S TENSOR REMARK 3 S11: -0.8539 S12: 0.2004 S13: -0.1028 REMARK 3 S21: -0.9217 S22: 0.5377 S23: 0.1109 REMARK 3 S31: 0.5506 S32: -0.0341 S33: -0.3906 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4744 2.5734 74.1721 REMARK 3 T TENSOR REMARK 3 T11: 1.1366 T22: 1.1669 REMARK 3 T33: 1.1248 T12: 0.0683 REMARK 3 T13: -0.0639 T23: 0.2013 REMARK 3 L TENSOR REMARK 3 L11: 6.3313 L22: 9.4274 REMARK 3 L33: 8.2991 L12: -4.5277 REMARK 3 L13: -1.0642 L23: -0.5722 REMARK 3 S TENSOR REMARK 3 S11: -0.8038 S12: -0.3318 S13: 1.0580 REMARK 3 S21: 2.2159 S22: 0.5473 S23: -0.5284 REMARK 3 S31: 2.2778 S32: -1.0214 S33: -0.0449 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 114 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4208 8.7170 57.7525 REMARK 3 T TENSOR REMARK 3 T11: 0.7684 T22: 1.5164 REMARK 3 T33: 1.8668 T12: -0.0881 REMARK 3 T13: 0.0103 T23: 0.2535 REMARK 3 L TENSOR REMARK 3 L11: 8.3106 L22: 7.4527 REMARK 3 L33: 8.4607 L12: 2.0802 REMARK 3 L13: 7.5326 L23: 5.1894 REMARK 3 S TENSOR REMARK 3 S11: -1.3253 S12: -0.4741 S13: 2.7754 REMARK 3 S21: -1.2127 S22: -0.8339 S23: 1.7770 REMARK 3 S31: -1.2648 S32: -0.4065 S33: 0.0599 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 126 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4095 11.9344 65.5471 REMARK 3 T TENSOR REMARK 3 T11: 0.4891 T22: 1.3517 REMARK 3 T33: 1.7695 T12: 0.1249 REMARK 3 T13: 0.3838 T23: -0.0996 REMARK 3 L TENSOR REMARK 3 L11: 1.9505 L22: 8.8522 REMARK 3 L33: 2.3885 L12: 2.4447 REMARK 3 L13: 1.7669 L23: 1.6317 REMARK 3 S TENSOR REMARK 3 S11: -0.3021 S12: -0.7525 S13: 2.0583 REMARK 3 S21: -1.1043 S22: 1.0220 S23: 1.7421 REMARK 3 S31: -1.1201 S32: -1.9569 S33: 0.7722 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 141 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0148 9.2522 62.6125 REMARK 3 T TENSOR REMARK 3 T11: 0.6850 T22: 0.8957 REMARK 3 T33: 1.7161 T12: -0.4526 REMARK 3 T13: 0.3641 T23: 0.3301 REMARK 3 L TENSOR REMARK 3 L11: 6.1141 L22: 7.1753 REMARK 3 L33: 4.5973 L12: 0.2582 REMARK 3 L13: 4.5560 L23: 3.1226 REMARK 3 S TENSOR REMARK 3 S11: 0.6644 S12: 1.4982 S13: 1.9345 REMARK 3 S21: -1.1128 S22: 1.0670 S23: 0.1953 REMARK 3 S31: -1.1008 S32: 0.8285 S33: 0.6273 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 154 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6094 -2.1051 61.1876 REMARK 3 T TENSOR REMARK 3 T11: 0.9695 T22: 1.0431 REMARK 3 T33: 1.3229 T12: -0.2162 REMARK 3 T13: -0.0171 T23: 0.5361 REMARK 3 L TENSOR REMARK 3 L11: 7.9745 L22: 3.9888 REMARK 3 L33: 3.5286 L12: -1.4932 REMARK 3 L13: 3.5137 L23: 2.0527 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.3539 S13: 1.0190 REMARK 3 S21: -0.3768 S22: -0.7244 S23: -0.6304 REMARK 3 S31: -0.5932 S32: 0.4954 S33: -0.1232 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 173 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3446 -10.0927 69.2359 REMARK 3 T TENSOR REMARK 3 T11: 0.8859 T22: 1.0415 REMARK 3 T33: 0.9614 T12: -0.2812 REMARK 3 T13: 0.0322 T23: 0.4876 REMARK 3 L TENSOR REMARK 3 L11: 5.2409 L22: 6.0500 REMARK 3 L33: 5.4070 L12: -2.0836 REMARK 3 L13: 3.2732 L23: 2.1896 REMARK 3 S TENSOR REMARK 3 S11: 0.5640 S12: -0.2009 S13: -0.1130 REMARK 3 S21: 0.1084 S22: -0.0016 S23: -0.3089 REMARK 3 S31: 0.8093 S32: 0.1298 S33: -0.3256 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0608 -10.1767 61.7986 REMARK 3 T TENSOR REMARK 3 T11: 1.1265 T22: 1.3310 REMARK 3 T33: 0.9246 T12: -0.0763 REMARK 3 T13: 0.2049 T23: 0.1856 REMARK 3 L TENSOR REMARK 3 L11: 9.1266 L22: 5.9396 REMARK 3 L33: 5.9057 L12: -2.0809 REMARK 3 L13: 2.7679 L23: 1.8429 REMARK 3 S TENSOR REMARK 3 S11: 0.8348 S12: 1.1383 S13: -0.5404 REMARK 3 S21: -0.5167 S22: 0.6289 S23: 0.8735 REMARK 3 S31: 0.4809 S32: 0.8861 S33: -0.7092 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 232 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4644 -10.1885 69.3103 REMARK 3 T TENSOR REMARK 3 T11: 1.0445 T22: 1.4496 REMARK 3 T33: 1.0694 T12: -0.1423 REMARK 3 T13: -0.0740 T23: 0.1595 REMARK 3 L TENSOR REMARK 3 L11: 3.3630 L22: 6.1604 REMARK 3 L33: 5.6801 L12: -1.7283 REMARK 3 L13: 2.2212 L23: 3.1372 REMARK 3 S TENSOR REMARK 3 S11: -0.1263 S12: -0.3690 S13: 0.2283 REMARK 3 S21: 0.4489 S22: 0.6661 S23: 0.4695 REMARK 3 S31: -0.3827 S32: 1.0870 S33: -0.8516 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1000298361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23419 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.070 REMARK 200 RESOLUTION RANGE LOW (A) : 49.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PARALLELEPIPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MAGNESIUM ACETATE, 1.1 M LITHIUM REMARK 280 SULFATE, 50 MM MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.83915 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.78150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.15285 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.83915 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 60.78150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 71.15285 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 PRO C 99 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 THR C 246 REMARK 465 SER C 247 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 13 CG CD CE NZ REMARK 470 GLU C 69 CG CD OE1 OE2 REMARK 470 LYS C 87 CD CE NZ REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 TYR C 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 110 CG CD OE1 OE2 REMARK 470 LYS C 117 CE NZ REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CD NE CZ NH1 NH2 REMARK 470 LYS C 155 CG CD CE NZ REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 97 -163.79 -118.98 REMARK 500 ARG C 145 75.52 -114.21 REMARK 500 PHE C 208 -66.55 -106.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 92.6 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9YZA RELATED DB: PDB REMARK 900 RELATED ID: 9YZB RELATED DB: PDB REMARK 900 RELATED ID: 9YZC RELATED DB: PDB REMARK 900 RELATED ID: 9YZD RELATED DB: PDB REMARK 900 RELATED ID: 9YZE RELATED DB: PDB DBREF 9YZF A 1 31 PDB 9YZF 9YZF 1 31 DBREF 9YZF B 12 42 PDB 9YZF 9YZF 12 42 DBREF 9YZF C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 9YZF MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 9YZF ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 9YZF GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 9YZF SER C -8 UNP P03856 EXPRESSION TAG SEQADV 9YZF HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 9YZF HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 9YZF HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 9YZF HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 9YZF HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 9YZF HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 9YZF GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 9YZF SER C 0 UNP P03856 EXPRESSION TAG SEQADV 9YZF PRO C 118 UNP P03856 ARG 118 CONFLICT SEQRES 1 A 31 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 31 DG DC DC DC DT DC DA DT DA DA DT DT DA SEQRES 3 A 31 DG DG DC DC DG SEQRES 1 B 31 DG DC DG DG DC DC DT DA DA DT DT DA DT SEQRES 2 B 31 DG DA DG DG DG DC DA DA DT DT DT DG DT SEQRES 3 B 31 DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 ASN C 132 TYR C 134 5 3 HELIX 6 AA6 LEU C 135 GLY C 141 1 7 HELIX 7 AA7 LEU C 151 LYS C 155 1 5 HELIX 8 AA8 ASN C 159 TYR C 172 1 14 HELIX 9 AA9 ILE C 185 GLN C 193 1 9 HELIX 10 AB1 PRO C 195 GLN C 199 5 5 HELIX 11 AB2 ARG C 200 PHE C 208 1 9 HELIX 12 AB3 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 HIS C 130 -1 O VAL C 129 N CYS C 60 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O PHE C 112 N VAL C 94 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O ILE C 238 N LEU C 183 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N LYS C 229 O HIS C 237 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.11 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.41 CRYST1 74.554 121.563 142.887 90.00 95.17 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013413 0.000000 0.001214 0.00000 SCALE2 0.000000 0.008226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007027 0.00000 CONECT 1745 3076 CONECT 1772 3076 CONECT 3076 1745 1772 MASTER 602 0 1 12 10 0 0 6 3037 3 3 27 END