HEADER DNA BINDING PROTEIN 30-OCT-25 9YZG TITLE ISORETICULAR CO-CRYSTAL 1 WITH ASYMMETRICAL EXPANDED DUPLEX (31MER) TITLE 2 CONTAINING INSERT SEQUENCE ATGAGTCATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (31-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: PROTEIN E,PROTEIN REP,PROTEIN F4, REPLICATION INITIATOR COMPND 13 PROTEIN REPE54; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: REPLICATION INITIATOR PROTEIN REPE54 WITH N-TERMINAL COMPND 16 SOLUBILITY TAG AND N-TERMINAL 6XHIS TAG SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: REPE, E, REP, ECOK12F045; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR E.T.SHIELDS,C.K.SLAUGHTER,E.N.MAGNA,C.D.SNOW REVDAT 1 18-FEB-26 9YZG 0 JRNL AUTH E.T.SHIELDS,C.K.SLAUGHTER,F.MEKKAOUI,E.N.MAGNA,C.SHEPHERD, JRNL AUTH 2 P.S.LUKEMAN,D.E.SPRATT,C.D.SNOW JRNL TITL MODULAR SCAFFOLD CRYSTALS FOR PROGRAMMABLE INSTALLATION AND JRNL TITL 2 STRUCTURAL OBSERVATION OF DNA-BINDING PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR D STRUCT 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 3.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 21971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.276 REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3300 - 7.7800 0.95 1231 140 0.1808 0.2043 REMARK 3 2 7.7700 - 6.1800 0.97 1223 140 0.2586 0.2847 REMARK 3 3 6.1800 - 5.4000 0.99 1261 137 0.2626 0.3046 REMARK 3 4 5.4000 - 4.9000 0.99 1254 134 0.2993 0.3349 REMARK 3 5 4.9000 - 4.5500 1.00 1257 141 0.2572 0.2751 REMARK 3 6 4.5500 - 4.2800 0.99 1238 146 0.2672 0.2942 REMARK 3 7 4.2800 - 4.0700 0.97 1239 122 0.2781 0.3268 REMARK 3 8 4.0700 - 3.8900 0.99 1243 147 0.2933 0.3171 REMARK 3 9 3.8900 - 3.7400 0.98 1251 128 0.3324 0.3817 REMARK 3 10 3.7400 - 3.6100 0.99 1244 143 0.3569 0.3969 REMARK 3 11 3.6100 - 3.5000 0.99 1237 133 0.4059 0.4072 REMARK 3 12 3.5000 - 3.4000 0.98 1225 141 0.4225 0.4723 REMARK 3 13 3.4000 - 3.3100 0.97 1214 141 0.4409 0.4580 REMARK 3 14 3.3100 - 3.2300 0.98 1251 131 0.4351 0.4783 REMARK 3 15 3.2300 - 3.1600 0.97 1204 132 0.4408 0.4733 REMARK 3 16 3.1600 - 3.0900 0.98 1209 134 0.4703 0.4898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 41.404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 97.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 159.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3259 REMARK 3 ANGLE : 0.562 4610 REMARK 3 CHIRALITY : 0.038 517 REMARK 3 PLANARITY : 0.005 384 REMARK 3 DIHEDRAL : 25.802 1363 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9538 -26.0051 54.4247 REMARK 3 T TENSOR REMARK 3 T11: 1.6901 T22: 1.2007 REMARK 3 T33: 1.5112 T12: -0.2218 REMARK 3 T13: -0.4384 T23: 0.4411 REMARK 3 L TENSOR REMARK 3 L11: 1.0292 L22: 0.0516 REMARK 3 L33: 0.0943 L12: -0.2234 REMARK 3 L13: -0.3447 L23: 0.0763 REMARK 3 S TENSOR REMARK 3 S11: 0.2183 S12: 0.7781 S13: -0.3396 REMARK 3 S21: 0.0872 S22: -0.1437 S23: 0.2324 REMARK 3 S31: 0.8389 S32: -0.2928 S33: -0.0582 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9525 7.3357 23.4979 REMARK 3 T TENSOR REMARK 3 T11: 1.9970 T22: 2.5632 REMARK 3 T33: 2.2772 T12: 0.1104 REMARK 3 T13: -0.5171 T23: 0.9147 REMARK 3 L TENSOR REMARK 3 L11: 0.1579 L22: 0.0948 REMARK 3 L33: 0.0513 L12: 0.1461 REMARK 3 L13: 0.0071 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: 0.1427 S13: 1.2050 REMARK 3 S21: -0.3357 S22: 0.2850 S23: 0.0340 REMARK 3 S31: 0.2879 S32: 0.0036 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4730 18.1417 16.0296 REMARK 3 T TENSOR REMARK 3 T11: 1.8176 T22: 2.4180 REMARK 3 T33: 2.2701 T12: 0.1706 REMARK 3 T13: -0.4949 T23: 1.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.0323 L22: 0.0078 REMARK 3 L33: 0.0099 L12: 0.0071 REMARK 3 L13: 0.0202 L23: 0.0073 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.2841 S13: -0.2817 REMARK 3 S21: 0.0623 S22: 0.1493 S23: -0.0748 REMARK 3 S31: 0.2286 S32: 0.1038 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2551 -18.8639 46.3881 REMARK 3 T TENSOR REMARK 3 T11: 1.6772 T22: 1.4939 REMARK 3 T33: 1.4918 T12: -0.2874 REMARK 3 T13: -0.3245 T23: 0.6037 REMARK 3 L TENSOR REMARK 3 L11: 0.4932 L22: 0.2508 REMARK 3 L33: 0.3961 L12: 0.1762 REMARK 3 L13: -0.2429 L23: 0.2457 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: 0.9739 S13: -0.1277 REMARK 3 S21: -0.4488 S22: -0.0622 S23: 0.0375 REMARK 3 S31: 0.2149 S32: -0.4871 S33: -0.0046 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1517 0.1547 60.1875 REMARK 3 T TENSOR REMARK 3 T11: 0.6989 T22: 0.7070 REMARK 3 T33: 1.8154 T12: -0.4565 REMARK 3 T13: -0.0994 T23: 0.6293 REMARK 3 L TENSOR REMARK 3 L11: 0.2378 L22: 0.1895 REMARK 3 L33: 0.0875 L12: 0.1264 REMARK 3 L13: 0.0563 L23: -0.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.0670 S12: 0.0823 S13: 0.0011 REMARK 3 S21: -0.0020 S22: -0.0492 S23: -0.1583 REMARK 3 S31: -0.0959 S32: 0.4062 S33: -0.0117 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 33 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2975 1.5432 48.7780 REMARK 3 T TENSOR REMARK 3 T11: 1.1932 T22: 0.8910 REMARK 3 T33: 1.3866 T12: -0.1831 REMARK 3 T13: -0.2976 T23: 1.0740 REMARK 3 L TENSOR REMARK 3 L11: 0.7033 L22: 0.0373 REMARK 3 L33: 0.0036 L12: 0.1737 REMARK 3 L13: 0.0304 L23: 0.0225 REMARK 3 S TENSOR REMARK 3 S11: 0.2975 S12: 0.5378 S13: 0.8319 REMARK 3 S21: -0.5108 S22: -0.1885 S23: -0.2175 REMARK 3 S31: 0.2061 S32: 0.0271 S33: 0.0606 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7728 -1.9950 69.8926 REMARK 3 T TENSOR REMARK 3 T11: 1.1672 T22: 1.1182 REMARK 3 T33: 0.9484 T12: -0.2278 REMARK 3 T13: -0.1095 T23: 0.3860 REMARK 3 L TENSOR REMARK 3 L11: 0.0082 L22: 0.0075 REMARK 3 L33: 0.0057 L12: 0.0090 REMARK 3 L13: 0.0002 L23: -0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.0508 S12: -0.1438 S13: 0.0855 REMARK 3 S21: -0.0287 S22: 0.1647 S23: -0.1055 REMARK 3 S31: 0.0717 S32: 0.1489 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 114 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0382 6.4001 58.0369 REMARK 3 T TENSOR REMARK 3 T11: 0.9783 T22: 1.3967 REMARK 3 T33: 1.6863 T12: 0.0236 REMARK 3 T13: 0.2734 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 0.0236 L22: 0.1078 REMARK 3 L33: 0.0038 L12: 0.0517 REMARK 3 L13: 0.0290 L23: -0.0118 REMARK 3 S TENSOR REMARK 3 S11: 0.5367 S12: -0.2251 S13: 1.0302 REMARK 3 S21: -0.5873 S22: 0.5200 S23: 0.1039 REMARK 3 S31: -0.3125 S32: -0.4987 S33: 0.0006 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 146 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1807 -3.0400 55.3453 REMARK 3 T TENSOR REMARK 3 T11: 0.8012 T22: 0.7343 REMARK 3 T33: 1.4791 T12: -0.8063 REMARK 3 T13: -0.2366 T23: 1.5248 REMARK 3 L TENSOR REMARK 3 L11: 0.0108 L22: 0.1895 REMARK 3 L33: 0.3338 L12: 0.0148 REMARK 3 L13: -0.0225 L23: 0.0085 REMARK 3 S TENSOR REMARK 3 S11: 0.0965 S12: 0.0425 S13: 0.2168 REMARK 3 S21: 0.1419 S22: -0.1274 S23: -0.1283 REMARK 3 S31: 0.2220 S32: 0.1560 S33: 0.1619 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 179 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8557 -10.8764 67.9178 REMARK 3 T TENSOR REMARK 3 T11: 0.0227 T22: 1.2213 REMARK 3 T33: 0.6945 T12: -0.4037 REMARK 3 T13: 0.3207 T23: 0.3887 REMARK 3 L TENSOR REMARK 3 L11: 0.0250 L22: 0.1565 REMARK 3 L33: 0.1960 L12: -0.0681 REMARK 3 L13: 0.0730 L23: -0.1890 REMARK 3 S TENSOR REMARK 3 S11: -0.1883 S12: 0.0746 S13: -0.1460 REMARK 3 S21: 0.1801 S22: -0.2174 S23: -0.0277 REMARK 3 S31: 0.1463 S32: 0.1165 S33: -0.2129 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 193 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9832 -21.5621 62.7411 REMARK 3 T TENSOR REMARK 3 T11: 1.0439 T22: 0.8298 REMARK 3 T33: 0.9914 T12: -0.2453 REMARK 3 T13: -0.2371 T23: 0.9057 REMARK 3 L TENSOR REMARK 3 L11: 0.0045 L22: 0.0527 REMARK 3 L33: 0.0670 L12: 0.0008 REMARK 3 L13: 0.0222 L23: -0.0125 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: -0.0116 S13: -0.0894 REMARK 3 S21: 0.1951 S22: -0.0451 S23: -0.0144 REMARK 3 S31: -0.0198 S32: -0.0210 S33: -0.0054 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 209 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7699 -14.4760 55.6977 REMARK 3 T TENSOR REMARK 3 T11: 0.8151 T22: 0.9179 REMARK 3 T33: 0.7244 T12: -0.0199 REMARK 3 T13: 0.4600 T23: 0.3360 REMARK 3 L TENSOR REMARK 3 L11: 0.0307 L22: 0.1318 REMARK 3 L33: 0.0275 L12: -0.0197 REMARK 3 L13: 0.0095 L23: 0.0528 REMARK 3 S TENSOR REMARK 3 S11: 0.2688 S12: -0.1903 S13: 0.0582 REMARK 3 S21: 0.3642 S22: 0.2319 S23: -0.1145 REMARK 3 S31: 0.0411 S32: 0.1823 S33: 0.0363 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 232 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1368 -13.5171 61.9540 REMARK 3 T TENSOR REMARK 3 T11: 0.8253 T22: 1.2034 REMARK 3 T33: 0.9979 T12: -0.4787 REMARK 3 T13: 0.1662 T23: 0.3324 REMARK 3 L TENSOR REMARK 3 L11: 0.0408 L22: 0.3011 REMARK 3 L33: 0.0396 L12: -0.1303 REMARK 3 L13: -0.0562 L23: 0.0978 REMARK 3 S TENSOR REMARK 3 S11: -0.1771 S12: 0.1478 S13: 0.1102 REMARK 3 S21: 0.3223 S22: 0.2106 S23: 0.0754 REMARK 3 S31: 0.1669 S32: 0.3016 S33: 0.0114 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9YZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1000299962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22096 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.090 REMARK 200 RESOLUTION RANGE LOW (A) : 46.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 1.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PARALLELEPIPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM MAGNESIUM ACETATE, 1.4 M LITHIUM REMARK 280 SULFATE, 50 MM MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.70194 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.52150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.84501 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.70194 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 63.52150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 65.84501 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -11 REMARK 465 ARG C -10 REMARK 465 GLY C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 THR C 4 REMARK 465 ALA C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ASN C 8 REMARK 465 HIS C 9 REMARK 465 LYS C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 LYS C 13 REMARK 465 ASN C 14 REMARK 465 ASP C 50 REMARK 465 GLY C 51 REMARK 465 THR C 52 REMARK 465 LEU C 53 REMARK 465 GLN C 54 REMARK 465 GLU C 55 REMARK 465 HIS C 56 REMARK 465 GLU C 100 REMARK 465 GLU C 101 REMARK 465 ASP C 102 REMARK 465 ALA C 103 REMARK 465 GLY C 104 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 465 LYS C 107 REMARK 465 GLY C 108 REMARK 465 MET C 248 REMARK 465 THR C 249 REMARK 465 THR C 250 REMARK 465 GLY C 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 17 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 57 CG OD1 OD2 REMARK 470 TYR C 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 87 CG CD CE NZ REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 117 CG CD CE NZ REMARK 470 LEU C 142 CG CD1 CD2 REMARK 470 GLN C 143 CG CD OE1 NE2 REMARK 470 ASN C 144 CG OD1 ND2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 150 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 97 -74.64 -62.18 REMARK 500 ARG C 98 66.38 63.56 REMARK 500 TYR C 134 -8.92 99.64 REMARK 500 LEU C 142 -117.30 -85.80 REMARK 500 GLN C 143 -124.23 52.16 REMARK 500 ARG C 145 75.44 -114.60 REMARK 500 PHE C 208 -67.15 -106.90 REMARK 500 THR C 246 0.13 -66.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 77 OE2 REMARK 620 2 ASP C 81 OD1 95.7 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9YZA RELATED DB: PDB REMARK 900 RELATED ID: 9YZB RELATED DB: PDB REMARK 900 RELATED ID: 9YZC RELATED DB: PDB REMARK 900 RELATED ID: 9YZD RELATED DB: PDB REMARK 900 RELATED ID: 9YZE RELATED DB: PDB REMARK 900 RELATED ID: 9YZF RELATED DB: PDB DBREF 9YZG A 1 31 PDB 9YZG 9YZG 1 31 DBREF 9YZG B 12 42 PDB 9YZG 9YZG 12 42 DBREF 9YZG C 1 251 UNP P03856 REPE1_ECOLI 1 251 SEQADV 9YZG MET C -11 UNP P03856 INITIATING METHIONINE SEQADV 9YZG ARG C -10 UNP P03856 EXPRESSION TAG SEQADV 9YZG GLY C -9 UNP P03856 EXPRESSION TAG SEQADV 9YZG SER C -8 UNP P03856 EXPRESSION TAG SEQADV 9YZG HIS C -7 UNP P03856 EXPRESSION TAG SEQADV 9YZG HIS C -6 UNP P03856 EXPRESSION TAG SEQADV 9YZG HIS C -5 UNP P03856 EXPRESSION TAG SEQADV 9YZG HIS C -4 UNP P03856 EXPRESSION TAG SEQADV 9YZG HIS C -3 UNP P03856 EXPRESSION TAG SEQADV 9YZG HIS C -2 UNP P03856 EXPRESSION TAG SEQADV 9YZG GLY C -1 UNP P03856 EXPRESSION TAG SEQADV 9YZG SER C 0 UNP P03856 EXPRESSION TAG SEQADV 9YZG PRO C 118 UNP P03856 ARG 118 CONFLICT SEQRES 1 A 31 DC DC DT DG DT DG DA DC DA DA DA DT DT SEQRES 2 A 31 DG DC DC DC DT DC DA DG DG DC DT DT DG SEQRES 3 A 31 DA DT DG DA DG SEQRES 1 B 31 DG DC DT DC DA DT DC DA DA DG DC DC DT SEQRES 2 B 31 DG DA DG DG DG DC DA DA DT DT DT DG DT SEQRES 3 B 31 DC DA DC DA DG SEQRES 1 C 263 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 C 263 ALA GLU THR ALA VAL ILE ASN HIS LYS LYS ARG LYS ASN SEQRES 3 C 263 SER PRO ARG ILE VAL GLN SER ASN ASP LEU THR GLU ALA SEQRES 4 C 263 ALA TYR SER LEU SER ARG ASP GLN LYS ARG MET LEU TYR SEQRES 5 C 263 LEU PHE VAL ASP GLN ILE ARG LYS SER ASP GLY THR LEU SEQRES 6 C 263 GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS VAL ALA LYS SEQRES 7 C 263 TYR ALA GLU ILE PHE GLY LEU THR SER ALA GLU ALA SER SEQRES 8 C 263 LYS ASP ILE ARG GLN ALA LEU LYS SER PHE ALA GLY LYS SEQRES 9 C 263 GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP ALA GLY ASP SEQRES 10 C 263 GLU LYS GLY TYR GLU SER PHE PRO TRP PHE ILE LYS PRO SEQRES 11 C 263 ALA HIS SER PRO SER ARG GLY LEU TYR SER VAL HIS ILE SEQRES 12 C 263 ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY LEU GLN ASN SEQRES 13 C 263 ARG PHE THR GLN PHE ARG LEU SER GLU THR LYS GLU ILE SEQRES 14 C 263 THR ASN PRO TYR ALA MET ARG LEU TYR GLU SER LEU CYS SEQRES 15 C 263 GLN TYR ARG LYS PRO ASP GLY SER GLY ILE VAL SER LEU SEQRES 16 C 263 LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN LEU PRO GLN SEQRES 17 C 263 SER TYR GLN ARG MET PRO ASP PHE ARG ARG ARG PHE LEU SEQRES 18 C 263 GLN VAL CYS VAL ASN GLU ILE ASN SER ARG THR PRO MET SEQRES 19 C 263 ARG LEU SER TYR ILE GLU LYS LYS LYS GLY ARG GLN THR SEQRES 20 C 263 THR HIS ILE VAL PHE SER PHE ARG ASP ILE THR SER MET SEQRES 21 C 263 THR THR GLY HET MG B 101 1 HET MG C 301 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 2(MG 2+) HELIX 1 AA1 ASN C 22 GLU C 26 1 5 HELIX 2 AA2 SER C 32 LYS C 48 1 17 HELIX 3 AA3 VAL C 64 GLY C 72 1 9 HELIX 4 AA4 THR C 74 PHE C 89 1 16 HELIX 5 AA5 LEU C 135 GLY C 141 1 7 HELIX 6 AA6 LEU C 151 LYS C 155 1 5 HELIX 7 AA7 ASN C 159 TYR C 172 1 14 HELIX 8 AA8 ILE C 185 GLN C 193 1 9 HELIX 9 AA9 PRO C 195 GLN C 199 5 5 HELIX 10 AB1 ARG C 200 PHE C 208 1 9 HELIX 11 AB2 PHE C 208 THR C 220 1 13 SHEET 1 AA1 2 ARG C 17 SER C 21 0 SHEET 2 AA1 2 PHE C 146 ARG C 150 -1 O THR C 147 N GLN C 20 SHEET 1 AA2 3 ILE C 59 HIS C 63 0 SHEET 2 AA2 3 LEU C 126 HIS C 130 -1 O TYR C 127 N ILE C 62 SHEET 3 AA2 3 HIS C 120 SER C 123 -1 N HIS C 120 O SER C 128 SHEET 1 AA3 2 GLU C 93 PHE C 96 0 SHEET 2 AA3 2 GLU C 110 PRO C 113 -1 O GLU C 110 N PHE C 96 SHEET 1 AA4 3 GLY C 179 LYS C 184 0 SHEET 2 AA4 3 GLN C 234 ASP C 244 -1 O ILE C 238 N LEU C 183 SHEET 3 AA4 3 MET C 222 LYS C 231 -1 N ARG C 223 O ARG C 243 LINK N4 DC B 18 MG MG B 101 1555 1555 2.35 LINK OE2 GLU C 77 MG MG C 301 1555 1555 2.07 LINK OD1 ASP C 81 MG MG C 301 1555 1555 2.28 CRYST1 74.167 127.043 131.719 90.00 91.20 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013483 0.000000 0.000283 0.00000 SCALE2 0.000000 0.007871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007594 0.00000 CONECT 774 3061 CONECT 1716 3062 CONECT 1743 3062 CONECT 3061 774 CONECT 3062 1716 1743 MASTER 534 0 2 11 10 0 0 6 3017 3 5 27 END